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15 results on '"Shmuel, Amir"'

1. A framework and resource for global collaboration in non-human primate neuroscience

Author

Hartig, Renée, Klink, P. Christiaan, Polyakova, Zlata, Dehaqani, Mohammad-Reza A., Bondar, Igor, Merchant, Hugo, Vanduffel, Wim, Roe, Anna Wang, Nambu, Atsushi, Thirumala, M., Shmuel, Amir, Kapoor, Vishal, Gothard, Katalin M., Evrard, Henry C., Basso, Michele A., Petkov, Chris, Mitchell, Anna S., Hartig, Renée, Klink, P. Christiaan, Polyakova, Zlata, Dehaqani, Mohammad-Reza A., Bondar, Igor, Merchant, Hugo, Vanduffel, Wim, Roe, Anna Wang, Nambu, Atsushi, Thirumala, M., Shmuel, Amir, Kapoor, Vishal, Gothard, Katalin M., Evrard, Henry C., Basso, Michele A., Petkov, Chris, and Mitchell, Anna S.

Abstract

As science and technology evolve, there is an increasing need for promotion of international scientific exchange. Collaborations, while offering substantial opportunities for scientists and benefit to society, also present challenges for those working with animal models, such as non-human primates (NHPs). Diversity in regulation of animal research is sometimes mistaken for the absence of common international welfare standards. Here, the ethical and regulatory protocols for 13 countries that have guidelines in place for biomedical research involving NHPs were assessed with a focus on neuroscience. Review of the variability and similarity in trans-national NHP welfare regulations extended to countries in Asia, Europe and North America. A tabulated resource was established to advance solution-oriented discussions and scientific collaborations across borders. Our aim is to better inform the public and other stakeholders. Through cooperative efforts to identify and analyze information with reference to evidence-based discussion, the proposed key ingredients may help to shape and support a more informed, open framework. This framework and resource can be expanded further for biomedical research in other countries.

Published
2023

2. A framework and resource for global collaboration in non-human primate neuroscience

Author

Leerstoel Smagt, Helmholtz Institute, Experimental Psychology (onderzoeksprogramma PF), Hartig, Renée, Klink, P. Christiaan, Polyakova, Zlata, Dehaqani, Mohammad-Reza A., Bondar, Igor, Merchant, Hugo, Vanduffel, Wim, Roe, Anna Wang, Nambu, Atsushi, Thirumala, M., Shmuel, Amir, Kapoor, Vishal, Gothard, Katalin M., Evrard, Henry C., Basso, Michele A., Petkov, Chris, Mitchell, Anna S., Leerstoel Smagt, Helmholtz Institute, Experimental Psychology (onderzoeksprogramma PF), Hartig, Renée, Klink, P. Christiaan, Polyakova, Zlata, Dehaqani, Mohammad-Reza A., Bondar, Igor, Merchant, Hugo, Vanduffel, Wim, Roe, Anna Wang, Nambu, Atsushi, Thirumala, M., Shmuel, Amir, Kapoor, Vishal, Gothard, Katalin M., Evrard, Henry C., Basso, Michele A., Petkov, Chris, and Mitchell, Anna S.

Published
2023

3. A framework and resource for global collaboration in non-human primate neuroscience

Author

Hartig, Renée, Klink, P Christiaan, Polyakova, Zlata, Dehaqani, Mohammad-Reza A, Bondar, Igor, Merchant, Hugo, Vanduffel, Wim, Roe, Anna Wang, Nambu, Atsushi, Thirumala, M, Shmuel, Amir, Kapoor, Vishal, Gothard, Katalin M, Evrard, Henry C, Basso, Michele A, Petkov, Christopher I, Mitchell, Anna S, Hartig, Renée, Klink, P Christiaan, Polyakova, Zlata, Dehaqani, Mohammad-Reza A, Bondar, Igor, Merchant, Hugo, Vanduffel, Wim, Roe, Anna Wang, Nambu, Atsushi, Thirumala, M, Shmuel, Amir, Kapoor, Vishal, Gothard, Katalin M, Evrard, Henry C, Basso, Michele A, Petkov, Christopher I, and Mitchell, Anna S

Abstract

As science and technology evolve, there is an increasing need for promotion of international scientific exchange. Collaborations, while offering substantial opportunities for scientists and benefit to society, also present challenges for those working with animal models, such as non-human primates (NHPs). Diversity in regulation of animal research is sometimes mistaken for the absence of common international welfare standards. Here, the ethical and regulatory protocols for 13 countries that have guidelines in place for biomedical research involving NHPs were assessed with a focus on neuroscience. Review of the variability and similarity in trans-national NHP welfare regulations extended to countries in Asia, Europe and North America. A tabulated resource was established to advance solution-oriented discussions and scientific collaborations across borders. Our aim is to better inform the public and other stakeholders. Through cooperative efforts to identify and analyze information with reference to evidence-based discussion, the proposed key ingredients may help to shape and support a more informed, open framework. This framework and resource can be expanded further for biomedical research in other countries.

Published
2023

4. Author Correction: A consensus protocol for functional connectivity analysis in the rat brain (Nature Neuroscience, (2023), 26, 4, (673-681), 10.1038/s41593-023-01286-8)

Author

In Vivo NMR ISI, Trialbureau Beeld, Brain, Circulatory Health, Stroke, Hubrecht Institute with UMC, Projectafdeling KIND, Grandjean, Joanes, Desrosiers-Gregoire, Gabriel, Anckaerts, Cynthia, Angeles-Valdez, Diego, Ayad, Fadi, Barrière, David A., Blockx, Ines, Bortel, Aleksandra, Broadwater, Margaret, Cardoso, Beatriz M., Célestine, Marina, Chavez-Negrete, Jorge E., Choi, Sangcheon, Christiaen, Emma, Clavijo, Perrin, Colon-Perez, Luis, Cramer, Samuel, Daniele, Tolomeo, Dempsey, Elaine, Diao, Yujian, Doelemeyer, Arno, Dopfel, David, Dvořáková, Lenka, Falfán-Melgoza, Claudia, Fernandes, Francisca F., Fowler, Caitlin F., Fuentes-Ibañez, Antonio, Garin, Clément M., Gelderman, Eveline, Golden, Carla E.M., Guo, Chao C.G., Henckens, Marloes J.A.G., Hennessy, Lauren A., Herman, Peter, Hofwijks, Nita, Horien, Corey, Ionescu, Tudor M., Jones, Jolyon, Kaesser, Johannes, Kim, Eugene, Lambers, Henriette, Lazari, Alberto, Lee, Sung Ho, Lillywhite, Amanda, Liu, Yikang, Liu, Yanyan Y., López -Castro, Alejandra, López-Gil, Xavier, Ma, Zilu, MacNicol, Eilidh, Madularu, Dan, Mandino, Francesca, Marciano, Sabina, McAuslan, Matthew J., McCunn, Patrick, McIntosh, Alison, Meng, Xianzong, Meyer-Baese, Lisa, Missault, Stephan, Moro, Federico, Naessens, Daphne M.P., Nava-Gomez, Laura J., Nonaka, Hiroi, Ortiz, Juan J., Paasonen, Jaakko, Peeters, Lore M., Pereira, Mickaël, Perez, Pablo D., Pompilus, Marjory, Prior, Malcolm, Rakhmatullin, Rustam, Reimann, Henning M., Reinwald, Jonathan, Del Rio, Rodrigo Triana, Rivera-Olvera, Alejandro, Ruiz-Pérez, Daniel, Russo, Gabriele, Rutten, Tobias J., Ryoke, Rie, Sack, Markus, Salvan, Piergiorgio, Sanganahalli, Basavaraju G., Schroeter, Aileen, Seewoo, Bhedita J., Selingue, Erwan, Seuwen, Aline, Shi, Bowen, Sirmpilatze, Nikoloz, Smith, Joanna A.B., Smith, Corrie, Sobczak, Filip, Stenroos, Petteri J., Straathof, Milou, Strobelt, Sandra, Sumiyoshi, Akira, Takahashi, Kengo, Torres-García, Maria E., Tudela, Raul, van den Berg, Monica, van der Marel, Kajo, van Hout, Aran T.B., Vertullo, Roberta, Vidal, Benjamin, Vrooman, Roël M., Wang, Victora X., Wank, Isabel, Watson, David J.G., Yin, Ting, Zhang, Yongzhi, Zurbruegg, Stefan, Achard, Sophie, Alcauter, Sarael, Auer, Dorothee P., Barbier, Emmanuel L., Baudewig, Jürgen, Beckmann, Christian F., Beckmann, Nicolau, Becq, Guillaume J.P.C., Blezer, Erwin L.A., Bolbos, Radu, Boretius, Susann, Bouvard, Sandrine, Budinger, Eike, Buxbaum, Joseph D., Cash, Diana, Chapman, Victoria, Chuang, Kai Hsiang, Ciobanu, Luisa, Coolen, Bram F., Dalley, Jeffrey W., Dhenain, Marc, Dijkhuizen, Rick M., Esteban, Oscar, Faber, Cornelius, Febo, Marcelo, Feindel, Kirk W., Forloni, Gianluigi, Fouquet, Jérémie, Garza-Villarreal, Eduardo A., Gass, Natalia, Glennon, Jeffrey C., Gozzi, Alessandro, Gröhn, Olli, Harkin, Andrew, Heerschap, Arend, Helluy, Xavier, Herfert, Kristina, Heuser, Arnd, Homberg, Judith R., Houwing, Danielle J., Hyder, Fahmeed, Ielacqua, Giovanna Diletta, Jelescu, Ileana O., Johansen-Berg, Heidi, Kaneko, Gen, Kawashima, Ryuta, Keilholz, Shella D., Keliris, Georgios A., Kelly, Clare, Kerskens, Christian, Khokhar, Jibran Y., Kind, Peter C., Langlois, Jean Baptiste, Lerch, Jason P., López-Hidalgo, Monica A., Manahan-Vaughan, Denise, Marchand, Fabien, Mars, Rogier B., Marsella, Gerardo, Micotti, Edoardo, Muñoz-Moreno, Emma, Near, Jamie, Niendorf, Thoralf, Otte, Willem M., Pais-Roldán, Patricia, Pan, Wen Ju, Prado-Alcalá, Roberto A., Quirarte, Gina L., Rodger, Jennifer, Rosenow, Tim, Sampaio-Baptista, Cassandra, Sartorius, Alexander, Sawiak, Stephen J., Scheenen, Tom W.J., Shemesh, Noam, Shih, Yen Yu Ian, Shmuel, Amir, Soria, Guadalupe, Stoop, Ron, Thompson, Garth J., Till, Sally M., Todd, Nick, Van Der Linden, Annemie, van der Toorn, Annette, van Tilborg, Geralda A.F., Vanhove, Christian, Veltien, Andor, Verhoye, Marleen, Wachsmuth, Lydia, Weber-Fahr, Wolfgang, Wenk, Patricia, Yu, Xin, Zerbi, Valerio, Zhang, Nanyin, Zhang, Baogui B., Zimmer, Luc, Devenyi, Gabriel A., Chakravarty, M. Mallar, Hess, Andreas, In Vivo NMR ISI, Trialbureau Beeld, Brain, Circulatory Health, Stroke, Hubrecht Institute with UMC, Projectafdeling KIND, Grandjean, Joanes, Desrosiers-Gregoire, Gabriel, Anckaerts, Cynthia, Angeles-Valdez, Diego, Ayad, Fadi, Barrière, David A., Blockx, Ines, Bortel, Aleksandra, Broadwater, Margaret, Cardoso, Beatriz M., Célestine, Marina, Chavez-Negrete, Jorge E., Choi, Sangcheon, Christiaen, Emma, Clavijo, Perrin, Colon-Perez, Luis, Cramer, Samuel, Daniele, Tolomeo, Dempsey, Elaine, Diao, Yujian, Doelemeyer, Arno, Dopfel, David, Dvořáková, Lenka, Falfán-Melgoza, Claudia, Fernandes, Francisca F., Fowler, Caitlin F., Fuentes-Ibañez, Antonio, Garin, Clément M., Gelderman, Eveline, Golden, Carla E.M., Guo, Chao C.G., Henckens, Marloes J.A.G., Hennessy, Lauren A., Herman, Peter, Hofwijks, Nita, Horien, Corey, Ionescu, Tudor M., Jones, Jolyon, Kaesser, Johannes, Kim, Eugene, Lambers, Henriette, Lazari, Alberto, Lee, Sung Ho, Lillywhite, Amanda, Liu, Yikang, Liu, Yanyan Y., López -Castro, Alejandra, López-Gil, Xavier, Ma, Zilu, MacNicol, Eilidh, Madularu, Dan, Mandino, Francesca, Marciano, Sabina, McAuslan, Matthew J., McCunn, Patrick, McIntosh, Alison, Meng, Xianzong, Meyer-Baese, Lisa, Missault, Stephan, Moro, Federico, Naessens, Daphne M.P., Nava-Gomez, Laura J., Nonaka, Hiroi, Ortiz, Juan J., Paasonen, Jaakko, Peeters, Lore M., Pereira, Mickaël, Perez, Pablo D., Pompilus, Marjory, Prior, Malcolm, Rakhmatullin, Rustam, Reimann, Henning M., Reinwald, Jonathan, Del Rio, Rodrigo Triana, Rivera-Olvera, Alejandro, Ruiz-Pérez, Daniel, Russo, Gabriele, Rutten, Tobias J., Ryoke, Rie, Sack, Markus, Salvan, Piergiorgio, Sanganahalli, Basavaraju G., Schroeter, Aileen, Seewoo, Bhedita J., Selingue, Erwan, Seuwen, Aline, Shi, Bowen, Sirmpilatze, Nikoloz, Smith, Joanna A.B., Smith, Corrie, Sobczak, Filip, Stenroos, Petteri J., Straathof, Milou, Strobelt, Sandra, Sumiyoshi, Akira, Takahashi, Kengo, Torres-García, Maria E., Tudela, Raul, van den Berg, Monica, van der Marel, Kajo, van Hout, Aran T.B., Vertullo, Roberta, Vidal, Benjamin, Vrooman, Roël M., Wang, Victora X., Wank, Isabel, Watson, David J.G., Yin, Ting, Zhang, Yongzhi, Zurbruegg, Stefan, Achard, Sophie, Alcauter, Sarael, Auer, Dorothee P., Barbier, Emmanuel L., Baudewig, Jürgen, Beckmann, Christian F., Beckmann, Nicolau, Becq, Guillaume J.P.C., Blezer, Erwin L.A., Bolbos, Radu, Boretius, Susann, Bouvard, Sandrine, Budinger, Eike, Buxbaum, Joseph D., Cash, Diana, Chapman, Victoria, Chuang, Kai Hsiang, Ciobanu, Luisa, Coolen, Bram F., Dalley, Jeffrey W., Dhenain, Marc, Dijkhuizen, Rick M., Esteban, Oscar, Faber, Cornelius, Febo, Marcelo, Feindel, Kirk W., Forloni, Gianluigi, Fouquet, Jérémie, Garza-Villarreal, Eduardo A., Gass, Natalia, Glennon, Jeffrey C., Gozzi, Alessandro, Gröhn, Olli, Harkin, Andrew, Heerschap, Arend, Helluy, Xavier, Herfert, Kristina, Heuser, Arnd, Homberg, Judith R., Houwing, Danielle J., Hyder, Fahmeed, Ielacqua, Giovanna Diletta, Jelescu, Ileana O., Johansen-Berg, Heidi, Kaneko, Gen, Kawashima, Ryuta, Keilholz, Shella D., Keliris, Georgios A., Kelly, Clare, Kerskens, Christian, Khokhar, Jibran Y., Kind, Peter C., Langlois, Jean Baptiste, Lerch, Jason P., López-Hidalgo, Monica A., Manahan-Vaughan, Denise, Marchand, Fabien, Mars, Rogier B., Marsella, Gerardo, Micotti, Edoardo, Muñoz-Moreno, Emma, Near, Jamie, Niendorf, Thoralf, Otte, Willem M., Pais-Roldán, Patricia, Pan, Wen Ju, Prado-Alcalá, Roberto A., Quirarte, Gina L., Rodger, Jennifer, Rosenow, Tim, Sampaio-Baptista, Cassandra, Sartorius, Alexander, Sawiak, Stephen J., Scheenen, Tom W.J., Shemesh, Noam, Shih, Yen Yu Ian, Shmuel, Amir, Soria, Guadalupe, Stoop, Ron, Thompson, Garth J., Till, Sally M., Todd, Nick, Van Der Linden, Annemie, van der Toorn, Annette, van Tilborg, Geralda A.F., Vanhove, Christian, Veltien, Andor, Verhoye, Marleen, Wachsmuth, Lydia, Weber-Fahr, Wolfgang, Wenk, Patricia, Yu, Xin, Zerbi, Valerio, Zhang, Nanyin, Zhang, Baogui B., Zimmer, Luc, Devenyi, Gabriel A., Chakravarty, M. Mallar, and Hess, Andreas

Published
2023

5. SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids

Author

Jansen, Jitske, Reimer, Katharina C., Nagai, James S., Varghese, Finny S., Overheul, Gijs J., de Beer, Marit, Roverts, Rona, Daviran, Deniz, Fermin, Liline A.S., Willemsen, Brigith, Beukenboom, Marcel, Djudjaj, Sonja, von Stillfried, Saskia, van Eijk, Larissa E., Mastik, Mirjam, Bulthuis, Marian, Dunnen, Wilfred den, van Goor, Harry, Hillebrands, Jan Luuk, Triana, Sergio H., Alexandrov, Theodore, Timm, Marie Cherelle, van den Berge, Bartholomeus T., van den Broek, Martijn, Nlandu, Quincy, Heijnert, Joelle, Bindels, Eric M.J., Hoogenboezem, Remco M., Mooren, Fieke, Kuppe, Christoph, Miesen, Pascal, Grünberg, Katrien, Ijzermans, Ties, Steenbergen, Eric J., Czogalla, Jan, Schreuder, Michiel F., Sommerdijk, Nico, Akiva, Anat, Boor, Peter, Puelles, Victor G., Floege, Jürgen, Huber, Tobias B., Achdout, Hagit, Aimon, Anthony, Bar-David, Elad, Barr, Haim, Ben-Shmuel, Amir, Bennett, James, Schneider, Rebekka K., Kramann, Rafael, Jansen, Jitske, Reimer, Katharina C., Nagai, James S., Varghese, Finny S., Overheul, Gijs J., de Beer, Marit, Roverts, Rona, Daviran, Deniz, Fermin, Liline A.S., Willemsen, Brigith, Beukenboom, Marcel, Djudjaj, Sonja, von Stillfried, Saskia, van Eijk, Larissa E., Mastik, Mirjam, Bulthuis, Marian, Dunnen, Wilfred den, van Goor, Harry, Hillebrands, Jan Luuk, Triana, Sergio H., Alexandrov, Theodore, Timm, Marie Cherelle, van den Berge, Bartholomeus T., van den Broek, Martijn, Nlandu, Quincy, Heijnert, Joelle, Bindels, Eric M.J., Hoogenboezem, Remco M., Mooren, Fieke, Kuppe, Christoph, Miesen, Pascal, Grünberg, Katrien, Ijzermans, Ties, Steenbergen, Eric J., Czogalla, Jan, Schreuder, Michiel F., Sommerdijk, Nico, Akiva, Anat, Boor, Peter, Puelles, Victor G., Floege, Jürgen, Huber, Tobias B., Achdout, Hagit, Aimon, Anthony, Bar-David, Elad, Barr, Haim, Ben-Shmuel, Amir, Bennett, James, Schneider, Rebekka K., and Kramann, Rafael

Abstract

Kidney failure is frequently observed during and after COVID-19, but it remains elusive whether this is a direct effect of the virus. Here, we report that SARS-CoV-2 directly infects kidney cells and is associated with increased tubule-interstitial kidney fibrosis in patient autopsy samples. To study direct effects of the virus on the kidney independent of systemic effects of COVID-19, we infected human-induced pluripotent stem-cell-derived kidney organoids with SARS-CoV-2. Single-cell RNA sequencing indicated injury and dedifferentiation of infected cells with activation of profibrotic signaling pathways. Importantly, SARS-CoV-2 infection also led to increased collagen 1 protein expression in organoids. A SARS-CoV-2 protease inhibitor was able to ameliorate the infection of kidney cells by SARS-CoV-2. Our results suggest that SARS-CoV-2 can directly infect kidney cells and induce cell injury with subsequent fibrosis. These data could explain both acute kidney injury in COVID-19 patients and the development of chronic kidney disease in long COVID.

Published
2022

6. An Open Resource for Non-human Primate Imaging.

Author

Milham, Michael P, Milham, Michael P, Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G, Blezer, Erwin LA, Brochier, Thomas, Chen, Aihua, Croxson, Paula L, Damatac, Christienne G, Dehaene, Stanislas, Everling, Stefan, Fair, Damian A, Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D, Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P Christiaan, Kwok, Sze Chai, Laland, Kevin N, Leopold, David A, Lindenfors, Patrik, Mars, Rogier B, Menon, Ravi S, Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H, Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I, Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M, Roelfsema, Pieter R, Rudko, David A, Rushworth, Matthew FS, Russ, Brian E, Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M, Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L, Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S, Tsao, Doris, Wang, Zheng, Wilson, Charles RE, Yacoub, Essa, Ye, Frank Q, Zarco, Wilbert, Zhou, Yong-di, Margulies, Daniel S, Schroeder, Charles E, Milham, Michael P, Milham, Michael P, Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G, Blezer, Erwin LA, Brochier, Thomas, Chen, Aihua, Croxson, Paula L, Damatac, Christienne G, Dehaene, Stanislas, Everling, Stefan, Fair, Damian A, Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D, Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P Christiaan, Kwok, Sze Chai, Laland, Kevin N, Leopold, David A, Lindenfors, Patrik, Mars, Rogier B, Menon, Ravi S, Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H, Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I, Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M, Roelfsema, Pieter R, Rudko, David A, Rushworth, Matthew FS, Russ, Brian E, Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M, Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L, Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S, Tsao, Doris, Wang, Zheng, Wilson, Charles RE, Yacoub, Essa, Ye, Frank Q, Zarco, Wilbert, Zhou, Yong-di, Margulies, Daniel S, and Schroeder, Charles E

Abstract

Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the necessary facilities and capabilities. The PRIMatE Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design, and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 25 independent data collections aggregated across 22 sites (total = 217 non-human primates). We also outline the unique pitfalls and challenges that should be considered in the analysis of non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets.

Published
2018

7. An Open Resource for Non-human Primate Imaging

Author

Milham, Michael P., Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G., Blezer, Erwin L.A., Brochier, Thomas, Chen, Aihua, Croxson, Paula L., Damatac, Christienne G., Dehaene, Stanislas, Everling, Stefan, Fair, Damian A., Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D., Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P. Christiaan, Kwok, Sze Chai, Laland, Kevin N., Leopold, David A., Lindenfors, Patrik, Mars, Rogier B., Menon, Ravi S., Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H., Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I., Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M., Roelfsema, Pieter R., Rudko, David A., Rushworth, Matthew F.S., Russ, Brian E., Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M., Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L., Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S., Tsao, Doris, Wang, Zheng, Wilson, Charles R.E., Yacoub, Essa, Ye, Frank Q., Zarco, Wilbert, Zhou, Yong di, Margulies, Daniel S., Schroeder, Charles E., Milham, Michael P., Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G., Blezer, Erwin L.A., Brochier, Thomas, Chen, Aihua, Croxson, Paula L., Damatac, Christienne G., Dehaene, Stanislas, Everling, Stefan, Fair, Damian A., Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D., Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P. Christiaan, Kwok, Sze Chai, Laland, Kevin N., Leopold, David A., Lindenfors, Patrik, Mars, Rogier B., Menon, Ravi S., Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H., Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I., Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M., Roelfsema, Pieter R., Rudko, David A., Rushworth, Matthew F.S., Russ, Brian E., Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M., Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L., Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S., Tsao, Doris, Wang, Zheng, Wilson, Charles R.E., Yacoub, Essa, Ye, Frank Q., Zarco, Wilbert, Zhou, Yong di, Margulies, Daniel S., and Schroeder, Charles E.

Published
2018

8. An Open Resource for Non-human Primate Imaging

Author

Milham, Michael P., Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Celine, Balezeau, Fabien, Baxter, Mark G., Blezer, Erwin L. A., Brochier, Thomas, Chen, Aihua, Croxson, Paula L., Damatac, Christienne G., Dehaene, Stanislas, Everling, Stefan, Fair, Damian A., Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D., Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P. Christiaan, Kwok, Sze Chai, Laland, Kevin N., Leopold, David A., Lindenfors, Patrik, Mars, Rogier B., Menon, Ravi S., Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H., Nacef, Jennifer, Nagy, Jamie, Ortiz Rios, Michael, Petkov, Christopher, Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M., Roelfsema, Pieter R., Rudko, David A., Rushworth, Matthew F. S., Russ, Brian E., Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M., Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L., Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S., Tsao, Doris, Wang, Zheng, Wilson, Charles R. E., Yacoub, Essa, Ye, Frank Q., Zarco, Wilbert, Zhou, Yong-di, Margulies, Daniel S., Schroeder, Charles E., Milham, Michael P., Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Celine, Balezeau, Fabien, Baxter, Mark G., Blezer, Erwin L. A., Brochier, Thomas, Chen, Aihua, Croxson, Paula L., Damatac, Christienne G., Dehaene, Stanislas, Everling, Stefan, Fair, Damian A., Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D., Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P. Christiaan, Kwok, Sze Chai, Laland, Kevin N., Leopold, David A., Lindenfors, Patrik, Mars, Rogier B., Menon, Ravi S., Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H., Nacef, Jennifer, Nagy, Jamie, Ortiz Rios, Michael, Petkov, Christopher, Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M., Roelfsema, Pieter R., Rudko, David A., Rushworth, Matthew F. S., Russ, Brian E., Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M., Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L., Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S., Tsao, Doris, Wang, Zheng, Wilson, Charles R. E., Yacoub, Essa, Ye, Frank Q., Zarco, Wilbert, Zhou, Yong-di, Margulies, Daniel S., and Schroeder, Charles E.

Abstract

Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the necessary facilities and capabilities. The PRIMatE Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design, and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 25 independent data collections aggregated across 22 sites (total = 217 non-human primates). We also outline the unique pitfalls and challenges that should be considered in the analysis of non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets.

Published
2018
Full Text
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9. An Open Resource for Non-human Primate Imaging

Author

Milham, Michael P., Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G., Blezer, Erwin L.A., Brochier, Thomas, Chen, Aihua, Croxson, Paula L., Damatac, Christienne G., Dehaene, Stanislas, Everling, Stefan, Fair, Damian A., Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D., Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P. Christiaan, Kwok, Sze Chai, Laland, Kevin N., Leopold, David A., Lindenfors, Patrik, Mars, Rogier B., Menon, Ravi S., Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H., Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I., Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M., Roelfsema, Pieter R., Rudko, David A., Rushworth, Matthew F.S., Russ, Brian E., Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M., Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L., Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S., Tsao, Doris, Wang, Zheng, Wilson, Charles R.E., Yacoub, Essa, Ye, Frank Q., Zarco, Wilbert, Zhou, Yong di, Margulies, Daniel S., Schroeder, Charles E., Milham, Michael P., Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G., Blezer, Erwin L.A., Brochier, Thomas, Chen, Aihua, Croxson, Paula L., Damatac, Christienne G., Dehaene, Stanislas, Everling, Stefan, Fair, Damian A., Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D., Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P. Christiaan, Kwok, Sze Chai, Laland, Kevin N., Leopold, David A., Lindenfors, Patrik, Mars, Rogier B., Menon, Ravi S., Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H., Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I., Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M., Roelfsema, Pieter R., Rudko, David A., Rushworth, Matthew F.S., Russ, Brian E., Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M., Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L., Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S., Tsao, Doris, Wang, Zheng, Wilson, Charles R.E., Yacoub, Essa, Ye, Frank Q., Zarco, Wilbert, Zhou, Yong di, Margulies, Daniel S., and Schroeder, Charles E.

Published
2018

10. An Open Resource for Non-human Primate Imaging

Author

Milham, Michael P, Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G, Blezer, Erwin L A, Brochier, Thomas, Chen, Aihua, Croxson, Paula L, Damatac, Christienne G, Dehaene, Stanislas, Everling, Stefan, Fair, Damian A, Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D, Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P Christiaan, Kwok, Sze Chai, Laland, Kevin N, Leopold, David A, Lindenfors, Patrik, Mars, Rogier B, Menon, Ravi S, Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H, Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I, Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M, Roelfsema, Pieter R, Rudko, David A, Rushworth, Matthew F S, Russ, Brian E, Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M, Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L, Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S, Tsao, Doris, Wang, Zheng, Wilson, Charles R E, Yacoub, Essa, Ye, Frank Q, Zarco, Wilbert, Zhou, Yong-di, Margulies, Daniel S, Schroeder, Charles E, Milham, Michael P, Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G, Blezer, Erwin L A, Brochier, Thomas, Chen, Aihua, Croxson, Paula L, Damatac, Christienne G, Dehaene, Stanislas, Everling, Stefan, Fair, Damian A, Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D, Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P Christiaan, Kwok, Sze Chai, Laland, Kevin N, Leopold, David A, Lindenfors, Patrik, Mars, Rogier B, Menon, Ravi S, Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H, Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I, Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M, Roelfsema, Pieter R, Rudko, David A, Rushworth, Matthew F S, Russ, Brian E, Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M, Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L, Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S, Tsao, Doris, Wang, Zheng, Wilson, Charles R E, Yacoub, Essa, Ye, Frank Q, Zarco, Wilbert, Zhou, Yong-di, Margulies, Daniel S, and Schroeder, Charles E

Abstract

Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the necessary facilities and capabilities. The PRIMatE Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design, and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 25 independent data collections aggregated across 22 sites (total = 217 non-human primates). We also outline the unique pitfalls and challenges that should be considered in the analysis of non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets.

Published
2018

11. An Open Resource for Non-human Primate Imaging.

Author

Milham, Michael P, Milham, Michael P, Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G, Blezer, Erwin LA, Brochier, Thomas, Chen, Aihua, Croxson, Paula L, Damatac, Christienne G, Dehaene, Stanislas, Everling, Stefan, Fair, Damian A, Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D, Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P Christiaan, Kwok, Sze Chai, Laland, Kevin N, Leopold, David A, Lindenfors, Patrik, Mars, Rogier B, Menon, Ravi S, Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H, Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I, Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M, Roelfsema, Pieter R, Rudko, David A, Rushworth, Matthew FS, Russ, Brian E, Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M, Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L, Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S, Tsao, Doris, Wang, Zheng, Wilson, Charles RE, Yacoub, Essa, Ye, Frank Q, Zarco, Wilbert, Zhou, Yong-di, Margulies, Daniel S, Schroeder, Charles E, Milham, Michael P, Milham, Michael P, Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G, Blezer, Erwin LA, Brochier, Thomas, Chen, Aihua, Croxson, Paula L, Damatac, Christienne G, Dehaene, Stanislas, Everling, Stefan, Fair, Damian A, Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D, Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P Christiaan, Kwok, Sze Chai, Laland, Kevin N, Leopold, David A, Lindenfors, Patrik, Mars, Rogier B, Menon, Ravi S, Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H, Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I, Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M, Roelfsema, Pieter R, Rudko, David A, Rushworth, Matthew FS, Russ, Brian E, Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M, Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L, Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S, Tsao, Doris, Wang, Zheng, Wilson, Charles RE, Yacoub, Essa, Ye, Frank Q, Zarco, Wilbert, Zhou, Yong-di, Margulies, Daniel S, and Schroeder, Charles E

Abstract

Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the necessary facilities and capabilities. The PRIMatE Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design, and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 25 independent data collections aggregated across 22 sites (total = 217 non-human primates). We also outline the unique pitfalls and challenges that should be considered in the analysis of non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets.

Published
2018

12. An Open Resource for Non-human Primate Imaging

Author

Milham, Michael P., Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G., Blezer, Erwin L.A., Brochier, Thomas, Chen, Aihua, Croxson, Paula L., Damatac, Christienne G., Dehaene, Stanislas, Everling, Stefan, Fair, Damian A., Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D., Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P. Christiaan, Kwok, Sze Chai, Laland, Kevin N., Leopold, David A., Lindenfors, Patrik, Mars, Rogier B., Menon, Ravi S., Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H., Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I., Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M., Roelfsema, Pieter R., Rudko, David A., Rushworth, Matthew F.S., Russ, Brian E., Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M., Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L., Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S., Tsao, Doris, Wang, Zheng, Wilson, Charles R.E., Yacoub, Essa, Ye, Frank Q., Zarco, Wilbert, Zhou, Yong di, Margulies, Daniel S., Schroeder, Charles E., Milham, Michael P., Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G., Blezer, Erwin L.A., Brochier, Thomas, Chen, Aihua, Croxson, Paula L., Damatac, Christienne G., Dehaene, Stanislas, Everling, Stefan, Fair, Damian A., Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D., Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P. Christiaan, Kwok, Sze Chai, Laland, Kevin N., Leopold, David A., Lindenfors, Patrik, Mars, Rogier B., Menon, Ravi S., Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H., Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I., Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M., Roelfsema, Pieter R., Rudko, David A., Rushworth, Matthew F.S., Russ, Brian E., Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M., Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L., Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S., Tsao, Doris, Wang, Zheng, Wilson, Charles R.E., Yacoub, Essa, Ye, Frank Q., Zarco, Wilbert, Zhou, Yong di, Margulies, Daniel S., and Schroeder, Charles E.

Published
2018

13. An Open Resource for Non-human Primate Imaging

Author

In Vivo NMR ISI, Brain, Milham, Michael P., Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G., Blezer, Erwin L.A., Brochier, Thomas, Chen, Aihua, Croxson, Paula L., Damatac, Christienne G., Dehaene, Stanislas, Everling, Stefan, Fair, Damian A., Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D., Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P. Christiaan, Kwok, Sze Chai, Laland, Kevin N., Leopold, David A., Lindenfors, Patrik, Mars, Rogier B., Menon, Ravi S., Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H., Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I., Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M., Roelfsema, Pieter R., Rudko, David A., Rushworth, Matthew F.S., Russ, Brian E., Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M., Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L., Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S., Tsao, Doris, Wang, Zheng, Wilson, Charles R.E., Yacoub, Essa, Ye, Frank Q., Zarco, Wilbert, Zhou, Yong di, Margulies, Daniel S., Schroeder, Charles E., In Vivo NMR ISI, Brain, Milham, Michael P., Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G., Blezer, Erwin L.A., Brochier, Thomas, Chen, Aihua, Croxson, Paula L., Damatac, Christienne G., Dehaene, Stanislas, Everling, Stefan, Fair, Damian A., Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D., Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P. Christiaan, Kwok, Sze Chai, Laland, Kevin N., Leopold, David A., Lindenfors, Patrik, Mars, Rogier B., Menon, Ravi S., Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H., Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I., Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M., Roelfsema, Pieter R., Rudko, David A., Rushworth, Matthew F.S., Russ, Brian E., Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M., Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L., Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S., Tsao, Doris, Wang, Zheng, Wilson, Charles R.E., Yacoub, Essa, Ye, Frank Q., Zarco, Wilbert, Zhou, Yong di, Margulies, Daniel S., and Schroeder, Charles E.

Published
2018

14. An Open Resource for Non-human Primate Imaging

Author

Milham, Michael P, Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G, Blezer, Erwin L A, Brochier, Thomas, Chen, Aihua, Croxson, Paula L, Damatac, Christienne G, Dehaene, Stanislas, Everling, Stefan, Fair, Damian A, Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D, Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P Christiaan, Kwok, Sze Chai, Laland, Kevin N, Leopold, David A, Lindenfors, Patrik, Mars, Rogier B, Menon, Ravi S, Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H, Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I, Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M, Roelfsema, Pieter R, Rudko, David A, Rushworth, Matthew F S, Russ, Brian E, Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M, Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L, Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S, Tsao, Doris, Wang, Zheng, Wilson, Charles R E, Yacoub, Essa, Ye, Frank Q, Zarco, Wilbert, Zhou, Yong-di, Margulies, Daniel S, Schroeder, Charles E, Milham, Michael P, Ai, Lei, Koo, Bonhwang, Xu, Ting, Amiez, Céline, Balezeau, Fabien, Baxter, Mark G, Blezer, Erwin L A, Brochier, Thomas, Chen, Aihua, Croxson, Paula L, Damatac, Christienne G, Dehaene, Stanislas, Everling, Stefan, Fair, Damian A, Fleysher, Lazar, Freiwald, Winrich, Froudist-Walsh, Sean, Griffiths, Timothy D, Guedj, Carole, Hadj-Bouziane, Fadila, Ben Hamed, Suliann, Harel, Noam, Hiba, Bassem, Jarraya, Bechir, Jung, Benjamin, Kastner, Sabine, Klink, P Christiaan, Kwok, Sze Chai, Laland, Kevin N, Leopold, David A, Lindenfors, Patrik, Mars, Rogier B, Menon, Ravi S, Messinger, Adam, Meunier, Martine, Mok, Kelvin, Morrison, John H, Nacef, Jennifer, Nagy, Jamie, Rios, Michael Ortiz, Petkov, Christopher I, Pinsk, Mark, Poirier, Colline, Procyk, Emmanuel, Rajimehr, Reza, Reader, Simon M, Roelfsema, Pieter R, Rudko, David A, Rushworth, Matthew F S, Russ, Brian E, Sallet, Jerome, Schmid, Michael Christoph, Schwiedrzik, Caspar M, Seidlitz, Jakob, Sein, Julien, Shmuel, Amir, Sullivan, Elinor L, Ungerleider, Leslie, Thiele, Alexander, Todorov, Orlin S, Tsao, Doris, Wang, Zheng, Wilson, Charles R E, Yacoub, Essa, Ye, Frank Q, Zarco, Wilbert, Zhou, Yong-di, Margulies, Daniel S, and Schroeder, Charles E

Abstract

Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the necessary facilities and capabilities. The PRIMatE Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design, and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 25 independent data collections aggregated across 22 sites (total = 217 non-human primates). We also outline the unique pitfalls and challenges that should be considered in the analysis of non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets.

Published
2018

15. Variability of the coupling of blood flow and oxygen metabolism responses in the brain: a problem for interpreting BOLD studies but potentially a new window on the underlying neural activity.

Author

Buxton, Richard B, Buxton, Richard B, Griffeth, Valerie EM, Simon, Aaron B, Moradi, Farshad, Shmuel, Amir, Buxton, Richard B, Buxton, Richard B, Griffeth, Valerie EM, Simon, Aaron B, Moradi, Farshad, and Shmuel, Amir

Abstract

Recent studies from our group and others using quantitative fMRI methods have found that variations of the coupling ratio of blood flow (CBF) and oxygen metabolism (CMRO2) responses to a stimulus have a strong effect on the BOLD response. Across a number of studies an empirical pattern is emerging in the way CBF and CMRO2 changes are coupled to neural activation: if the stimulus is modulated to create a stronger response (e.g., increasing stimulus contrast), CBF is modulated more than CMRO2; on the other hand, if the brain state is altered such that the response to the same stimulus is increased (e.g., modulating attention, adaptation, or excitability), CMRO2 is modulated more than CBF. Because CBF and CMRO2 changes conflict in producing BOLD signal changes, this finding has an important implication for conventional BOLD-fMRI studies: the BOLD response exaggerates the effects of stimulus variation but is only weakly sensitive to modulations of the brain state that alter the response to a standard stimulus. A speculative hypothesis is that variability of the coupling ratio of the CBF and CMRO2 responses reflects different proportions of inhibitory and excitatory evoked activity, potentially providing a new window on neural activity in the human brain.

Published
2014

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