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31 results on '"Pitluck, S"'

1. Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds.

Author

Hwang, C, Hwang, C, Copeland, A, Lucas, S, Lapidus, A, Barry, K, Detter, JC, Glavina Del Rio, T, Hammon, N, Israni, S, Dalin, E, Tice, H, Pitluck, S, Chertkov, O, Brettin, T, Bruce, D, Han, C, Schmutz, J, Larimer, F, Land, ML, Hauser, L, Kyrpides, N, Mikhailova, N, Ye, Q, Zhou, J, Richardson, P, Fields, MW, Hwang, C, Hwang, C, Copeland, A, Lucas, S, Lapidus, A, Barry, K, Detter, JC, Glavina Del Rio, T, Hammon, N, Israni, S, Dalin, E, Tice, H, Pitluck, S, Chertkov, O, Brettin, T, Bruce, D, Han, C, Schmutz, J, Larimer, F, Land, ML, Hauser, L, Kyrpides, N, Mikhailova, N, Ye, Q, Zhou, J, Richardson, P, and Fields, MW

Abstract

Alkaliphilus metalliredigens strain QYMF is an anaerobic, alkaliphilic, and metal-reducing bacterium associated with phylum Firmicutes QYMF was isolated from alkaline borax leachate ponds. The genome sequence will help elucidate the role of metal-reducing microorganisms under alkaline environments, a capability that is not commonly observed in metal respiring-microorganisms.

Published
2016

2. Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34

Author

Anderson, IJ, DasSarma, P, Lucas, S, Copeland, A, Lapidus, A, Del Rio, TG, Tice, H, Dalin, E, Bruce, DC, Goodwin, L, Pitluck, S, Sims, D, Brettin, TS, Detter, JC, Han, CS, Larimer, F, Hauser, L, Land, M, Ivanova, N, Richardson, P, Cavicchioli, R, DasSarma, S, Woese, CR, Kyrpides, NC, Anderson, IJ, DasSarma, P, Lucas, S, Copeland, A, Lapidus, A, Del Rio, TG, Tice, H, Dalin, E, Bruce, DC, Goodwin, L, Pitluck, S, Sims, D, Brettin, TS, Detter, JC, Han, CS, Larimer, F, Hauser, L, Land, M, Ivanova, N, Richardson, P, Cavicchioli, R, DasSarma, S, Woese, CR, and Kyrpides, NC

Abstract

Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because of its psychrotolerance. We report here the complete genome sequence of H. lacusprofundi type strain ACAM 34 and its annotation. This genome is part of a 2006 Joint Genome Institute Community Sequencing Program project to sequence genomes of diverse Archaea.

Published
2016

3. Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds.

Author

Hwang, C, Hwang, C, Copeland, A, Lucas, S, Lapidus, A, Barry, K, Detter, JC, Glavina Del Rio, T, Hammon, N, Israni, S, Dalin, E, Tice, H, Pitluck, S, Chertkov, O, Brettin, T, Bruce, D, Han, C, Schmutz, J, Larimer, F, Land, ML, Hauser, L, Kyrpides, N, Mikhailova, N, Ye, Q, Zhou, J, Richardson, P, Fields, MW, Hwang, C, Hwang, C, Copeland, A, Lucas, S, Lapidus, A, Barry, K, Detter, JC, Glavina Del Rio, T, Hammon, N, Israni, S, Dalin, E, Tice, H, Pitluck, S, Chertkov, O, Brettin, T, Bruce, D, Han, C, Schmutz, J, Larimer, F, Land, ML, Hauser, L, Kyrpides, N, Mikhailova, N, Ye, Q, Zhou, J, Richardson, P, and Fields, MW

Abstract

Alkaliphilus metalliredigens strain QYMF is an anaerobic, alkaliphilic, and metal-reducing bacterium associated with phylum Firmicutes QYMF was isolated from alkaline borax leachate ponds. The genome sequence will help elucidate the role of metal-reducing microorganisms under alkaline environments, a capability that is not commonly observed in metal respiring-microorganisms.

Published
2016

4. Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8

Author

Kits, K.D., Kalyuzhnaya, M.G., Klotz, M.G., Jetten, M.S.M., Camp, H.J.M. op den, Vuilleumier, S., Bringel, F., DiSpirito, A.A., Murrell, J.C., Bruce, D., Cheng, J.-F., Copeland, A., Goodwin, L., Hauser, L., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Médigue, C., Pitluck, S., Woyke, T., Zeytun, A., Stein, L.Y., Kits, K.D., Kalyuzhnaya, M.G., Klotz, M.G., Jetten, M.S.M., Camp, H.J.M. op den, Vuilleumier, S., Bringel, F., DiSpirito, A.A., Murrell, J.C., Bruce, D., Cheng, J.-F., Copeland, A., Goodwin, L., Hauser, L., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Médigue, C., Pitluck, S., Woyke, T., Zeytun, A., and Stein, L.Y.

Abstract

Contains fulltext : 117016.pdf (publisher's version ) (Open Access)

Published
2013

5. Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271T)

Author

Nandasena, K., Yates, R., Tiwari, R., O’Hara, G., Howieson, J., Ninawi, M., Chertkov, O., Detter, C., Tapia, R., Han, S., Woyke, T., Pitluck, S., Nolan, M., Land, M., Liolios, K., Pati, A., Copeland, A., Kyrpides, N., Ivanova, N., Goodwin, L., Meenakshi, U., Reeve, W., Nandasena, K., Yates, R., Tiwari, R., O’Hara, G., Howieson, J., Ninawi, M., Chertkov, O., Detter, C., Tapia, R., Han, S., Woyke, T., Pitluck, S., Nolan, M., Land, M., Liolios, K., Pati, A., Copeland, A., Kyrpides, N., Ivanova, N., Goodwin, L., Meenakshi, U., and Reeve, W.

Abstract

Mesorhizobium ciceri bv. biserrulae strain WSM1271T was isolated from root nodules of the pasture legume Biserrula pelecinus growing in the Mediterranean basin. Previous studies have shown this aerobic, motile, Gram negative, non-spore-forming rod preferably nodulates B. pelecinus – a legume with many beneficial agronomic attributes for sustainable agriculture in Australia. We describe the genome of Mesorhizobium ciceri bv. biserrulae strain WSM1271T consisting of a 6,264,489 bp chromosome and a 425,539 bp plasmid that together encode 6,470 protein-coding genes and 61 RNA-only encoding genes.

Published
2013

6. Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075T

Author

Reeve, W., Nandasena, K., Yates, R., Tiwari, R., O’Hara, G., Ninawi, M., Chertkov, O., Goodwin, L., Bruce, D., Detter, C., Tapia, R., Han, S., Woyke, T., Pitluck, S., Nolan, M., Land, M., Copeland, A., Liolios, K., Pati, A., Mavromatis, K., Markowitz, V., Kyrpides, N., Ivanova, N., Meenakshi, U., Howieson, J., Reeve, W., Nandasena, K., Yates, R., Tiwari, R., O’Hara, G., Ninawi, M., Chertkov, O., Goodwin, L., Bruce, D., Detter, C., Tapia, R., Han, S., Woyke, T., Pitluck, S., Nolan, M., Land, M., Copeland, A., Liolios, K., Pati, A., Mavromatis, K., Markowitz, V., Kyrpides, N., Ivanova, N., Meenakshi, U., and Howieson, J.

Abstract

Mesorhizobium opportunistum strain WSM2075T was isolated in Western Australia in 2000 from root nodules of the pasture legume Biserrula pelecinus that had been inoculated with M. ciceri bv. biserrulae WSM1271. WSM2075T is an aerobic, motile, Gram negative, non-spore-forming rod that has gained the ability to nodulate B. pelecinus but is completely ineffective in N2 fixation with this host. This report reveals that the genome of M. opportunistum strain WSM2075T contains a chromosome of size 6,884,444 bp, encoding 6,685 protein-coding genes and 62 RNA-only encoding genes. The genome contains no plasmids, but does harbor a 455.7 kb genomic island from Mesorhizobium ciceri bv. biserrulae WSM1271 that has been integrated into a phenylalanine-tRNA gene.

Published
2013

7. Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1

Author

Reeve, W.G., Tian, R, De Meyer, S., Melino, V., Terpolilli, J., Ardley, J., Tiwari, R., Howieson, J., Yates, R., O'Hara, G., Ninawi, M., Teshima, H., Bruce, D., Detter, C., Tapia, R., Han, C., Wei, C-L, Huntemann, M., Han, J., Chen, I-M, Mavromatis, K., Markowitz, V., Ivanova, N., Ovchinnikova, G., Pagani, I., Pati, A., Goodwin, L., Pitluck, S., Woyke, T., Kyrpides, N, Reeve, W.G., Tian, R, De Meyer, S., Melino, V., Terpolilli, J., Ardley, J., Tiwari, R., Howieson, J., Yates, R., O'Hara, G., Ninawi, M., Teshima, H., Bruce, D., Detter, C., Tapia, R., Han, C., Wei, C-L, Huntemann, M., Han, J., Chen, I-M, Mavromatis, K., Markowitz, V., Ivanova, N., Ovchinnikova, G., Pagani, I., Pati, A., Goodwin, L., Pitluck, S., Woyke, T., and Kyrpides, N

Abstract

Rhizobium leguminosarum bv. trifolii strain TA1 is an aerobic, motile, Gram-negative, non-spore-forming rod that is an effective nitrogen fixing microsymbiont on the perennial clovers originating from Europe and the Mediterranean basin. TA1 however is ineffective with many annual and perennial clovers originating from Africa and America. Here we describe the features of R. leguminosarum bv. trifolii strain TA1, together with genome sequence information and annotation. The 8,618,824 bp high-quality-draft genome is arranged in a 6 scaffold of 32 contigs, contains 8,493 protein-coding genes and 83 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.

Published
2013

8. Genome sequence of the Lebeckia ambigua-nodulating 'Burkholderia sprentiae' strain WSM5005T

Author

Reeve, W.G., De Meyer, S., Terpolilli, J., Melino, V., Ardley, J., Tian, R, Tiwari, R., Howieson, J., Yates, R., O'Hara, G., Lu, M., Bruce, D., Detter, C., Tapia, R., Han, C., Wei, C-L, Huntemann, M., Han, J., Chen, I-M, Mavromatis, K., Markowitz, V., Szeto, E., Ivanova, N., Mikhailova, N., Ovchinnikova, G., Pagani, I., Pati, A., Goodwin, L., Peters, L., Pitluck, S., Woyke, T., Kyrpides, N, Reeve, W.G., De Meyer, S., Terpolilli, J., Melino, V., Ardley, J., Tian, R, Tiwari, R., Howieson, J., Yates, R., O'Hara, G., Lu, M., Bruce, D., Detter, C., Tapia, R., Han, C., Wei, C-L, Huntemann, M., Han, J., Chen, I-M, Mavromatis, K., Markowitz, V., Szeto, E., Ivanova, N., Mikhailova, N., Ovchinnikova, G., Pagani, I., Pati, A., Goodwin, L., Peters, L., Pitluck, S., Woyke, T., and Kyrpides, N

Abstract

Burkholderia sprentiae strain WSM5005T is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated in Australia from an effective N2-fixing root nodule of Lebeckia ambigua collected in Trawal, Western Cape of South Africa, in October 2007. Here we describe the features of Burkholderia sprentiae strain WSM5005T, together with the genome sequence and its annotation. The 7,761,063 bp high-quality-draft genome is arranged in 8 scaffolds of 236 contigs, contains 7,147 protein-coding genes and 76 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.

Published
2013

9. Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations

Author

Bollmann, A., Sedlacek, C.J., Norton, J., Laanbroek, H.J., Suwa, Y., Stein, L.Y., Klotz, M.G., Arp, D., Sayavedra-Soto, L., Lu, M., Bruce, D., Detter, C., Tapia, R., Han, J., Woyke, T., Lucas, S., Pitluck, S., Pennacchio, L., Nolan, M., Land, M.L., Huntemann, M., Deshpande, S., Han, C., Chen, A., Kyrpides, N., Mavromatis, K., Markowitz, V., Szeto, E., Ivanova, N., Mikhailova, N., Pagani, I., Pati, A., Peters, L., Ovchinnikova, G., Goodwin, L., Bollmann, A., Sedlacek, C.J., Norton, J., Laanbroek, H.J., Suwa, Y., Stein, L.Y., Klotz, M.G., Arp, D., Sayavedra-Soto, L., Lu, M., Bruce, D., Detter, C., Tapia, R., Han, J., Woyke, T., Lucas, S., Pitluck, S., Pennacchio, L., Nolan, M., Land, M.L., Huntemann, M., Deshpande, S., Han, C., Chen, A., Kyrpides, N., Mavromatis, K., Markowitz, V., Szeto, E., Ivanova, N., Mikhailova, N., Pagani, I., Pati, A., Peters, L., Ovchinnikova, G., and Goodwin, L.

Abstract

Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high interest because it is adapted to low ammonium and can be found in freshwater environments around the world. The 3,783,444-bp chromosome with a total of 3,553 protein coding genes and 44 RNA genes was sequenced by the DOE-Joint Genome Institute Program CSP 2006. [KEYWORDS: Nitrosomonas Ammonia-oxidizing bacteria Ammonia oxidation nitrification nitrogen cycle freshwater oligotrophic DIFFERENT SENSITIVITIES KDP-ATPASE RNA GENES NOV-SP EUROPAEA NICHE MODEL PROTEOBACTERIA MULTIFORMIS EXPRESSION], Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high interest because it is adapted to low ammonium and can be found in freshwater environments around the world. The 3,783,444-bp chromosome with a total of 3,553 protein coding genes and 44 RNA genes was sequenced by the DOE-Joint Genome Institute Program CSP 2006. [KEYWORDS: Nitrosomonas Ammonia-oxidizing bacteria Ammonia oxidation nitrification nitrogen cycle freshwater oligotrophic DIFFERENT SENSITIVITIES KDP-ATPASE RNA GENES NOV-SP EUROPAEA NICHE MODEL PROTEOBACTERIA MULTIFORMIS EXPRESSION]

Published
2013

10. Genome sequence of the Lebeckia ambigua-nodulating 'Burkholderia sprentiae' strain WSM5005

Author

Reeve, W, De Meyer, S, Terpolilli, J, Melino, V, Ardley, J, Rui, T, Tiwari, R, Howieson, J, Yates, R, O'Hara, G, Lu, M, Bruce, D, Detter, C, Tapia, R, Han, C, Wei, C-L, Huntemann, M, Han, J, Chen, I-M, Mavromatis, K, Markowitz, V, Szeto, E, Ivanova, N, Mikhailova, N, Ovchinnikova, G, Pagani, I, Pati, A, Goodwin, L, Peters, L, Pitluck, S, Woyke, T, Kyrpides, N, Reeve, W, De Meyer, S, Terpolilli, J, Melino, V, Ardley, J, Rui, T, Tiwari, R, Howieson, J, Yates, R, O'Hara, G, Lu, M, Bruce, D, Detter, C, Tapia, R, Han, C, Wei, C-L, Huntemann, M, Han, J, Chen, I-M, Mavromatis, K, Markowitz, V, Szeto, E, Ivanova, N, Mikhailova, N, Ovchinnikova, G, Pagani, I, Pati, A, Goodwin, L, Peters, L, Pitluck, S, Woyke, T, and Kyrpides, N

Abstract

"Burkholderia sprentiae" strain WSM5005(T) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated in Australia from an effective N2-fixing root nodule of Lebeckia ambigua collected in Klawer, Western Cape of South Africa, in October 2007. Here we describe the features of "Burkholderia sprentiae" strain WSM5005(T), together with the genome sequence and its annotation. The 7,761,063 bp high-quality-draft genome is arranged in 8 scaffolds of 236 contigs, contains 7,147 protein-coding genes and 76 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.

Published
2013

11. Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1

Author

Reeve, W, Tian, R, De Meyer, S, Melino, V, Terpolilli, J, Ardley, J, Tiwari, R, Howieson, J, Yates, R, O'Hara, G, Ninawi, M, Teshima, H, Bruce, D, Detter, C, Tapia, R, Han, C, Wei, C-L, Huntemann, M, Han, J, Chen, I-M, Mavromatis, K, Markowitz, V, Ivanova, N, Ovchinnikova, G, Pagani, I, Pati, A, Goodwin, L, Pitluck, S, Woyke, T, Kyrpides, N, Reeve, W, Tian, R, De Meyer, S, Melino, V, Terpolilli, J, Ardley, J, Tiwari, R, Howieson, J, Yates, R, O'Hara, G, Ninawi, M, Teshima, H, Bruce, D, Detter, C, Tapia, R, Han, C, Wei, C-L, Huntemann, M, Han, J, Chen, I-M, Mavromatis, K, Markowitz, V, Ivanova, N, Ovchinnikova, G, Pagani, I, Pati, A, Goodwin, L, Pitluck, S, Woyke, T, and Kyrpides, N

Abstract

Rhizobium leguminosarum bv. trifolii strain TA1 is an aerobic, motile, Gram-negative, non-spore-forming rod that is an effective nitrogen fixing microsymbiont on the perennial clovers originating from Europe and the Mediterranean basin. TA1 however is ineffective with many annual and perennial clovers originating from Africa and America. Here we describe the features of R. leguminosarum bv. trifolii strain TA1, together with genome sequence information and annotation. The 8,618,824 bp high-quality-draft genome is arranged in a 6 scaffold of 32 contigs, contains 8,493 protein-coding genes and 83 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.

Published
2013

12. Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8

Author

Kits, K.D., Kalyuzhnaya, M.G., Klotz, M.G., Jetten, M.S.M., Camp, H.J.M. op den, Vuilleumier, S., Bringel, F., DiSpirito, A.A., Murrell, J.C., Bruce, D., Cheng, J.-F., Copeland, A., Goodwin, L., Hauser, L., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Médigue, C., Pitluck, S., Woyke, T., Zeytun, A., Stein, L.Y., Kits, K.D., Kalyuzhnaya, M.G., Klotz, M.G., Jetten, M.S.M., Camp, H.J.M. op den, Vuilleumier, S., Bringel, F., DiSpirito, A.A., Murrell, J.C., Bruce, D., Cheng, J.-F., Copeland, A., Goodwin, L., Hauser, L., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Médigue, C., Pitluck, S., Woyke, T., Zeytun, A., and Stein, L.Y.

Abstract

Contains fulltext : 117016.pdf (publisher's version ) (Open Access)

Published
2013

13. Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271T)

Author

Nandasena, K., Yates, R., Tiwari, R., O’Hara, G., Howieson, J., Ninawi, M., Chertkov, O., Detter, C., Tapia, R., Han, S., Woyke, T., Pitluck, S., Nolan, M., Land, M., Liolios, K., Pati, A., Copeland, A., Kyrpides, N., Ivanova, N., Goodwin, L., Meenakshi, U., Reeve, W., Nandasena, K., Yates, R., Tiwari, R., O’Hara, G., Howieson, J., Ninawi, M., Chertkov, O., Detter, C., Tapia, R., Han, S., Woyke, T., Pitluck, S., Nolan, M., Land, M., Liolios, K., Pati, A., Copeland, A., Kyrpides, N., Ivanova, N., Goodwin, L., Meenakshi, U., and Reeve, W.

Abstract

Mesorhizobium ciceri bv. biserrulae strain WSM1271T was isolated from root nodules of the pasture legume Biserrula pelecinus growing in the Mediterranean basin. Previous studies have shown this aerobic, motile, Gram negative, non-spore-forming rod preferably nodulates B. pelecinus – a legume with many beneficial agronomic attributes for sustainable agriculture in Australia. We describe the genome of Mesorhizobium ciceri bv. biserrulae strain WSM1271T consisting of a 6,264,489 bp chromosome and a 425,539 bp plasmid that together encode 6,470 protein-coding genes and 61 RNA-only encoding genes.

Published
2013

14. Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075T

Author

Reeve, W., Nandasena, K., Yates, R., Tiwari, R., O’Hara, G., Ninawi, M., Chertkov, O., Goodwin, L., Bruce, D., Detter, C., Tapia, R., Han, S., Woyke, T., Pitluck, S., Nolan, M., Land, M., Copeland, A., Liolios, K., Pati, A., Mavromatis, K., Markowitz, V., Kyrpides, N., Ivanova, N., Meenakshi, U., Howieson, J., Reeve, W., Nandasena, K., Yates, R., Tiwari, R., O’Hara, G., Ninawi, M., Chertkov, O., Goodwin, L., Bruce, D., Detter, C., Tapia, R., Han, S., Woyke, T., Pitluck, S., Nolan, M., Land, M., Copeland, A., Liolios, K., Pati, A., Mavromatis, K., Markowitz, V., Kyrpides, N., Ivanova, N., Meenakshi, U., and Howieson, J.

Abstract

Mesorhizobium opportunistum strain WSM2075T was isolated in Western Australia in 2000 from root nodules of the pasture legume Biserrula pelecinus that had been inoculated with M. ciceri bv. biserrulae WSM1271. WSM2075T is an aerobic, motile, Gram negative, non-spore-forming rod that has gained the ability to nodulate B. pelecinus but is completely ineffective in N2 fixation with this host. This report reveals that the genome of M. opportunistum strain WSM2075T contains a chromosome of size 6,884,444 bp, encoding 6,685 protein-coding genes and 62 RNA-only encoding genes. The genome contains no plasmids, but does harbor a 455.7 kb genomic island from Mesorhizobium ciceri bv. biserrulae WSM1271 that has been integrated into a phenylalanine-tRNA gene.

Published
2013

15. Genome sequence of the Lebeckia ambigua-nodulating 'Burkholderia sprentiae' strain WSM5005T

Author

Reeve, W.G., De Meyer, S., Terpolilli, J., Melino, V., Ardley, J., Tian, R, Tiwari, R., Howieson, J., Yates, R., O'Hara, G., Lu, M., Bruce, D., Detter, C., Tapia, R., Han, C., Wei, C-L, Huntemann, M., Han, J., Chen, I-M, Mavromatis, K., Markowitz, V., Szeto, E., Ivanova, N., Mikhailova, N., Ovchinnikova, G., Pagani, I., Pati, A., Goodwin, L., Peters, L., Pitluck, S., Woyke, T., Kyrpides, N, Reeve, W.G., De Meyer, S., Terpolilli, J., Melino, V., Ardley, J., Tian, R, Tiwari, R., Howieson, J., Yates, R., O'Hara, G., Lu, M., Bruce, D., Detter, C., Tapia, R., Han, C., Wei, C-L, Huntemann, M., Han, J., Chen, I-M, Mavromatis, K., Markowitz, V., Szeto, E., Ivanova, N., Mikhailova, N., Ovchinnikova, G., Pagani, I., Pati, A., Goodwin, L., Peters, L., Pitluck, S., Woyke, T., and Kyrpides, N

Abstract

Burkholderia sprentiae strain WSM5005T is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated in Australia from an effective N2-fixing root nodule of Lebeckia ambigua collected in Trawal, Western Cape of South Africa, in October 2007. Here we describe the features of Burkholderia sprentiae strain WSM5005T, together with the genome sequence and its annotation. The 7,761,063 bp high-quality-draft genome is arranged in 8 scaffolds of 236 contigs, contains 7,147 protein-coding genes and 76 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.

Published
2013

16. Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1

Author

Reeve, W.G., Tian, R, De Meyer, S., Melino, V., Terpolilli, J., Ardley, J., Tiwari, R., Howieson, J., Yates, R., O'Hara, G., Ninawi, M., Teshima, H., Bruce, D., Detter, C., Tapia, R., Han, C., Wei, C-L, Huntemann, M., Han, J., Chen, I-M, Mavromatis, K., Markowitz, V., Ivanova, N., Ovchinnikova, G., Pagani, I., Pati, A., Goodwin, L., Pitluck, S., Woyke, T., Kyrpides, N, Reeve, W.G., Tian, R, De Meyer, S., Melino, V., Terpolilli, J., Ardley, J., Tiwari, R., Howieson, J., Yates, R., O'Hara, G., Ninawi, M., Teshima, H., Bruce, D., Detter, C., Tapia, R., Han, C., Wei, C-L, Huntemann, M., Han, J., Chen, I-M, Mavromatis, K., Markowitz, V., Ivanova, N., Ovchinnikova, G., Pagani, I., Pati, A., Goodwin, L., Pitluck, S., Woyke, T., and Kyrpides, N

Abstract

Rhizobium leguminosarum bv. trifolii strain TA1 is an aerobic, motile, Gram-negative, non-spore-forming rod that is an effective nitrogen fixing microsymbiont on the perennial clovers originating from Europe and the Mediterranean basin. TA1 however is ineffective with many annual and perennial clovers originating from Africa and America. Here we describe the features of R. leguminosarum bv. trifolii strain TA1, together with genome sequence information and annotation. The 8,618,824 bp high-quality-draft genome is arranged in a 6 scaffold of 32 contigs, contains 8,493 protein-coding genes and 83 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.

Published
2013

17. Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations

Author

Bollmann, A., Sedlacek, C.J., Norton, J., Laanbroek, H.J., Suwa, Y., Stein, L.Y., Klotz, M.G., Arp, D., Sayavedra-Soto, L., Lu, M., Bruce, D., Detter, C., Tapia, R., Han, J., Woyke, T., Lucas, S., Pitluck, S., Pennacchio, L., Nolan, M., Land, M.L., Huntemann, M., Deshpande, S., Han, C., Chen, A., Kyrpides, N., Mavromatis, K., Markowitz, V., Szeto, E., Ivanova, N., Mikhailova, N., Pagani, I., Pati, A., Peters, L., Ovchinnikova, G., Goodwin, L., Bollmann, A., Sedlacek, C.J., Norton, J., Laanbroek, H.J., Suwa, Y., Stein, L.Y., Klotz, M.G., Arp, D., Sayavedra-Soto, L., Lu, M., Bruce, D., Detter, C., Tapia, R., Han, J., Woyke, T., Lucas, S., Pitluck, S., Pennacchio, L., Nolan, M., Land, M.L., Huntemann, M., Deshpande, S., Han, C., Chen, A., Kyrpides, N., Mavromatis, K., Markowitz, V., Szeto, E., Ivanova, N., Mikhailova, N., Pagani, I., Pati, A., Peters, L., Ovchinnikova, G., and Goodwin, L.

Abstract

Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high interest because it is adapted to low ammonium and can be found in freshwater environments around the world. The 3,783,444-bp chromosome with a total of 3,553 protein coding genes and 44 RNA genes was sequenced by the DOE-Joint Genome Institute Program CSP 2006. [KEYWORDS: Nitrosomonas Ammonia-oxidizing bacteria Ammonia oxidation nitrification nitrogen cycle freshwater oligotrophic DIFFERENT SENSITIVITIES KDP-ATPASE RNA GENES NOV-SP EUROPAEA NICHE MODEL PROTEOBACTERIA MULTIFORMIS EXPRESSION], Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high interest because it is adapted to low ammonium and can be found in freshwater environments around the world. The 3,783,444-bp chromosome with a total of 3,553 protein coding genes and 44 RNA genes was sequenced by the DOE-Joint Genome Institute Program CSP 2006. [KEYWORDS: Nitrosomonas Ammonia-oxidizing bacteria Ammonia oxidation nitrification nitrogen cycle freshwater oligotrophic DIFFERENT SENSITIVITIES KDP-ATPASE RNA GENES NOV-SP EUROPAEA NICHE MODEL PROTEOBACTERIA MULTIFORMIS EXPRESSION]

Published
2013

18. Complete genome sequence of Dehalobacter restrictus PER-K23T

Author

Kruse, T.K., Maillard, J., Goodwin, L.A., Woyke, T., Teshima, H., Bruce, D.C., Detter, J.C., Tapia, R., Han, C., Huntemann, M., Wei, C.L., Han, J., Chen, A., Kyrpides, N., Szeto, E., Markowitz, V., Ivanova, N., Pagani, I., Pati, A., Pitluck, S., Nolan, M., Holliger, C., Smidt, H., Kruse, T.K., Maillard, J., Goodwin, L.A., Woyke, T., Teshima, H., Bruce, D.C., Detter, J.C., Tapia, R., Han, C., Huntemann, M., Wei, C.L., Han, J., Chen, A., Kyrpides, N., Szeto, E., Markowitz, V., Ivanova, N., Pagani, I., Pati, A., Pitluck, S., Nolan, M., Holliger, C., and Smidt, H.

Abstract

Dehalobacter restrictus strain PER-K23 (DSM 9455) is the type strain of the species Dehalobacter restrictus. D. restrictus strain PER-K23 grows by organohalide respiration, coupling the oxidation of H2 to the reductive dechlorination of tetra- or trichloroethene. Growth has not been observed with any other electron donor or acceptor, nor has fermentative growth been shown. Here we introduce the first full genome of a pure culture within the genus Dehalobacter. The 2,943,336 bp long genome contains 2,826 protein coding and 82 RNA genes, including 5 16S rRNA genes. Interestingly, the genome contains 25 predicted reductive dehalogenase genes, the majority of which appear to be full length. The reductive dehalogenase genes are mainly located in two clusters, suggesting a much larger potential for organohalide respiration than previously anticipated

Published
2013

19. Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)

Author

Spring, S., Visser, M., Lu, M., Copeland, A., Lapidus, A., Lucas, S., Cheng, J.F., Han, C., Tapia, R., Goodwin, L.A., Pitluck, S., Ivanova, N., Land, M., Hauser, L., Larimer, F., Rohde, M., Göker, M., Detter, J.C., Kyrpides, N., Woyke, T., Schaap, P.J., Plugge, C.M., Muyzer, G., Kuever, J., Pereira, I.A.C., Parshina, S.N., Bernier-Latmani, R., Stams, A.J.M., Klenk, H.P., Spring, S., Visser, M., Lu, M., Copeland, A., Lapidus, A., Lucas, S., Cheng, J.F., Han, C., Tapia, R., Goodwin, L.A., Pitluck, S., Ivanova, N., Land, M., Hauser, L., Larimer, F., Rohde, M., Göker, M., Detter, J.C., Kyrpides, N., Woyke, T., Schaap, P.J., Plugge, C.M., Muyzer, G., Kuever, J., Pereira, I.A.C., Parshina, S.N., Bernier-Latmani, R., Stams, A.J.M., and Klenk, H.P.

Abstract

Strain DLT (= DSM 2154 = ATCC 23193 = NCIMB 8452) is the type strain of the species Desulfotomaculum ruminis [1], one out of current-ly 30 species with validly published names in the paraphyletic genus Desulfotomaculum [2,3]. Strain DLT was initially isolated by G. S. Coleman in the 1950s from the rumen of hay-fed sheep [4]. Dissimilatory reduction of sulfate to sulfide in the rumen was first demonstrated by Lewis [5], who dosed fistulated sheep with sulfate and deter-mined the amount of sulfide produced. As high amounts of sulfide may be toxic to animals, bacte-rial sulfate-reduction in ruminants was a concern due to the presence of sulfate in grass and hay. D. ruminis represented the first pure culture of a sul-fate-reducing bacterium isolated from the rumen. The genus name was derived from the Latin words 'de', from, ‘sulfur’, sulfur, and 'tomaculum', a kind of sausage, meaning 'a sausage-shaped sul-fate reducer' [2,6]. The species epithet is derived from the Latin word 'rumen', throat, first stomach (rumen) of a ruminant, meaning of a rumen [1,2]. Here, we present a summary classification and a set of features for D. ruminis strain DLT, together with the description of the complete genomic se-quencing and annotation. The complete genome sequence of strain DLT will provide valuable in-formation for defining a more adequate descrip-tion of the currently paraphyletic genus Desulfotomaculum

Published
2012

20. Complete genome sequence of riemerella anatipestifer type strain (ATCC 11845 T)

Author

Mavromatis, K, Mavromatis, K, Lu, M, Misra, M, Lapidus, A, Nolan, M, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Jeffries, CD, Detter, JC, Brambilla, EM, Rohde, M, Göker, M, Gronow, S, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP, Kyrpides, NC, Mavromatis, K, Mavromatis, K, Lu, M, Misra, M, Lapidus, A, Nolan, M, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Jeffries, CD, Detter, JC, Brambilla, EM, Rohde, M, Göker, M, Gronow, S, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP, and Kyrpides, NC

Abstract

Riemerella anatipestifer (Hendrickson and Hilbert 1932) Segers et al. 1993 is the type species of the genus Riemerella, which belongs to the family Flavobacteriaceae. The species is of in-terest because of the position of the genus in the phylogenetic tree and because of its role as a pathogen of commercially important avian species worldwide. This is the first completed genome sequence of a member of the genus Riemerella. The 2,155,121 bp long genome with its 2,001 protein-coding and 51 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Published
2011

21. Complete genome sequence of the aerobic marine methanotroph methylomonas methanica mc09

Author

Boden, R., Cunliffe, M., Scanlan, J., Moussard, H., Kits, K.D., Klotz, M.G., Jetten, M.S.M., Vuilleumier, S., Han, J., Peters, L., Mikhailova, N., Teshima, H., Tapia, R., Kyrpides, N., Ivanova, N., Pagani, I., Cheng, J.F., Goodwin, L., Han, C., Hauser, L., Land, M.L., Lapidus, A., Lucas, S., Pitluck, S., Woyke, T., Stein, L., Murrell, J.C., Boden, R., Cunliffe, M., Scanlan, J., Moussard, H., Kits, K.D., Klotz, M.G., Jetten, M.S.M., Vuilleumier, S., Han, J., Peters, L., Mikhailova, N., Teshima, H., Tapia, R., Kyrpides, N., Ivanova, N., Pagani, I., Cheng, J.F., Goodwin, L., Han, C., Hauser, L., Land, M.L., Lapidus, A., Lucas, S., Pitluck, S., Woyke, T., Stein, L., and Murrell, J.C.

Abstract

Contains fulltext : 91654.pdf (publisher's version ) (Closed access)

Published
2011

22. Genome sequence of the methanotrophic alphaproteobacterium methylocystis sp strain rockwell (atcc 49242)

Author

Stein, L.Y., Bringel, F., DiSpirito, A.A., Han, S., Jetten, M.S.M., Kalyuzhnaya, M.G., Kits, K.D., Klotz, M.G., Camp, H.J.M. op den, Semrau, J.D., Vuilleumier, S., Bruce, D.C., Cheng, J.F., Davenport, K.W., Goodwin, L., Han, S.S., Hauser, L., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Medigue, C., Pitluck, S., Woyke, T., Stein, L.Y., Bringel, F., DiSpirito, A.A., Han, S., Jetten, M.S.M., Kalyuzhnaya, M.G., Kits, K.D., Klotz, M.G., Camp, H.J.M. op den, Semrau, J.D., Vuilleumier, S., Bruce, D.C., Cheng, J.F., Davenport, K.W., Goodwin, L., Han, S.S., Hauser, L., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Medigue, C., Pitluck, S., and Woyke, T.

Abstract

Contains fulltext : 91854.pdf (publisher's version ) (Closed access)

Published
2011

23. Complete genome sequence of riemerella anatipestifer type strain (ATCC 11845 T)

Author

Mavromatis, K, Mavromatis, K, Lu, M, Misra, M, Lapidus, A, Nolan, M, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Jeffries, CD, Detter, JC, Brambilla, EM, Rohde, M, Göker, M, Gronow, S, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP, Kyrpides, NC, Mavromatis, K, Mavromatis, K, Lu, M, Misra, M, Lapidus, A, Nolan, M, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Pagani, I, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Jeffries, CD, Detter, JC, Brambilla, EM, Rohde, M, Göker, M, Gronow, S, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP, and Kyrpides, NC

Abstract

Riemerella anatipestifer (Hendrickson and Hilbert 1932) Segers et al. 1993 is the type species of the genus Riemerella, which belongs to the family Flavobacteriaceae. The species is of in-terest because of the position of the genus in the phylogenetic tree and because of its role as a pathogen of commercially important avian species worldwide. This is the first completed genome sequence of a member of the genus Riemerella. The 2,155,121 bp long genome with its 2,001 protein-coding and 51 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Published
2011

24. Complete genome sequence of the aerobic marine methanotroph methylomonas methanica mc09

Author

Boden, R., Cunliffe, M., Scanlan, J., Moussard, H., Kits, K.D., Klotz, M.G., Jetten, M.S.M., Vuilleumier, S., Han, J., Peters, L., Mikhailova, N., Teshima, H., Tapia, R., Kyrpides, N., Ivanova, N., Pagani, I., Cheng, J.F., Goodwin, L., Han, C., Hauser, L., Land, M.L., Lapidus, A., Lucas, S., Pitluck, S., Woyke, T., Stein, L., Murrell, J.C., Boden, R., Cunliffe, M., Scanlan, J., Moussard, H., Kits, K.D., Klotz, M.G., Jetten, M.S.M., Vuilleumier, S., Han, J., Peters, L., Mikhailova, N., Teshima, H., Tapia, R., Kyrpides, N., Ivanova, N., Pagani, I., Cheng, J.F., Goodwin, L., Han, C., Hauser, L., Land, M.L., Lapidus, A., Lucas, S., Pitluck, S., Woyke, T., Stein, L., and Murrell, J.C.

Abstract

Contains fulltext : 91654.pdf (publisher's version ) (Closed access)

Published
2011

25. Genome sequence of the methanotrophic alphaproteobacterium methylocystis sp strain rockwell (atcc 49242)

Author

Stein, L.Y., Bringel, F., DiSpirito, A.A., Han, S., Jetten, M.S.M., Kalyuzhnaya, M.G., Kits, K.D., Klotz, M.G., Camp, H.J.M. op den, Semrau, J.D., Vuilleumier, S., Bruce, D.C., Cheng, J.F., Davenport, K.W., Goodwin, L., Han, S.S., Hauser, L., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Medigue, C., Pitluck, S., Woyke, T., Stein, L.Y., Bringel, F., DiSpirito, A.A., Han, S., Jetten, M.S.M., Kalyuzhnaya, M.G., Kits, K.D., Klotz, M.G., Camp, H.J.M. op den, Semrau, J.D., Vuilleumier, S., Bruce, D.C., Cheng, J.F., Davenport, K.W., Goodwin, L., Han, S.S., Hauser, L., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Medigue, C., Pitluck, S., and Woyke, T.

Abstract

Contains fulltext : 91854.pdf (publisher's version ) (Closed access)

Published
2011

26. Genome sequence of the methanotrophic alphaproteobacterium methylocystis sp strain rockwell (atcc 49242)

Author

Stein, L.Y., Bringel, F., DiSpirito, A.A., Han, S., Jetten, M.S.M., Kalyuzhnaya, M.G., Kits, K.D., Klotz, M.G., Camp, H.J.M. op den, Semrau, J.D., Vuilleumier, S., Bruce, D.C., Cheng, J.F., Davenport, K.W., Goodwin, L., Han, S.S., Hauser, L., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Medigue, C., Pitluck, S., Woyke, T., Stein, L.Y., Bringel, F., DiSpirito, A.A., Han, S., Jetten, M.S.M., Kalyuzhnaya, M.G., Kits, K.D., Klotz, M.G., Camp, H.J.M. op den, Semrau, J.D., Vuilleumier, S., Bruce, D.C., Cheng, J.F., Davenport, K.W., Goodwin, L., Han, S.S., Hauser, L., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Medigue, C., Pitluck, S., and Woyke, T.

Abstract

Contains fulltext : 91854.pdf (publisher's version ) (Closed access)

Published
2011

27. Genome sequence of the obligate methanotroph methylosinus trichosporium strain ob3b

Author

Stein, L.Y., Yoon, S., Semrau, J.D., DiSpirito, A.A., Crombie, A., Murrell, J.C., Vuilleumier, S., Kalyuzhnaya, M.G., Camp, H.J.M. op den, Bringel, F., Bruce, D., Cheng, J.F., Copeland, A., Goodwin, L., Han, S., Hauser, L., Jetten, M.S.M., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Médigue, C., Pitluck, S., Woyke, T., Zeytun, A., Klotz, M.G., Stein, L.Y., Yoon, S., Semrau, J.D., DiSpirito, A.A., Crombie, A., Murrell, J.C., Vuilleumier, S., Kalyuzhnaya, M.G., Camp, H.J.M. op den, Bringel, F., Bruce, D., Cheng, J.F., Copeland, A., Goodwin, L., Han, S., Hauser, L., Jetten, M.S.M., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Médigue, C., Pitluck, S., Woyke, T., Zeytun, A., and Klotz, M.G.

Abstract

Contains fulltext : 83382.pdf (publisher's version ) (Closed access)

Published
2010

28. Genome sequence of the obligate methanotroph methylosinus trichosporium strain ob3b

Author

Stein, L.Y., Yoon, S., Semrau, J.D., DiSpirito, A.A., Crombie, A., Murrell, J.C., Vuilleumier, S., Kalyuzhnaya, M.G., Camp, H.J.M. op den, Bringel, F., Bruce, D., Cheng, J.F., Copeland, A., Goodwin, L., Han, S., Hauser, L., Jetten, M.S.M., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Médigue, C., Pitluck, S., Woyke, T., Zeytun, A., Klotz, M.G., Stein, L.Y., Yoon, S., Semrau, J.D., DiSpirito, A.A., Crombie, A., Murrell, J.C., Vuilleumier, S., Kalyuzhnaya, M.G., Camp, H.J.M. op den, Bringel, F., Bruce, D., Cheng, J.F., Copeland, A., Goodwin, L., Han, S., Hauser, L., Jetten, M.S.M., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Médigue, C., Pitluck, S., Woyke, T., Zeytun, A., and Klotz, M.G.

Abstract

Contains fulltext : 83382.pdf (publisher's version ) (Closed access)

Published
2010

29. Genome sequence of the obligate methanotroph methylosinus trichosporium strain ob3b

Author

Stein, L.Y., Yoon, S., Semrau, J.D., DiSpirito, A.A., Crombie, A., Murrell, J.C., Vuilleumier, S., Kalyuzhnaya, M.G., Camp, H.J.M. op den, Bringel, F., Bruce, D., Cheng, J.F., Copeland, A., Goodwin, L., Han, S., Hauser, L., Jetten, M.S.M., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Médigue, C., Pitluck, S., Woyke, T., Zeytun, A., Klotz, M.G., Stein, L.Y., Yoon, S., Semrau, J.D., DiSpirito, A.A., Crombie, A., Murrell, J.C., Vuilleumier, S., Kalyuzhnaya, M.G., Camp, H.J.M. op den, Bringel, F., Bruce, D., Cheng, J.F., Copeland, A., Goodwin, L., Han, S., Hauser, L., Jetten, M.S.M., Lajus, A., Land, M.L., Lapidus, A., Lucas, S., Médigue, C., Pitluck, S., Woyke, T., Zeytun, A., and Klotz, M.G.

Abstract

Contains fulltext : 83382.pdf (publisher's version ) (Closed access)

Published
2010

30. Complete genome sequence of Halogeometricum borinquense type strain (PR3T)

Author

Malfatti, S, Malfatti, S, Tindall, BJ, Schneider, S, Fähnrich, R, Lapidus, A, LaButtii, K, Copeland, A, Del Rio, TG, Nolan, M, Chen, F, Lu-cas, S, Tice, H, Cheng, JF, Bruce, D, Goodwin, L, Pitluck, S, An-derson, I, Pati, A, Ivanova, N, Mavromatis, K, Chen, A, Pa-laniappan, K, D'haeseleer, P, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP, Chain, P, Malfatti, S, Malfatti, S, Tindall, BJ, Schneider, S, Fähnrich, R, Lapidus, A, LaButtii, K, Copeland, A, Del Rio, TG, Nolan, M, Chen, F, Lu-cas, S, Tice, H, Cheng, JF, Bruce, D, Goodwin, L, Pitluck, S, An-derson, I, Pati, A, Ivanova, N, Mavromatis, K, Chen, A, Pa-laniappan, K, D'haeseleer, P, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP, and Chain, P

Abstract

Halogeometricum borinquense Montalvo-Rodríguez et al. 1998 is the type species of the ge-nus, and is of phylogenetic interest because of its distinct location between the halobacterial genera Haloquadratum and Halosarcina. H. borinquense requires extremely high salt (NaCl) concentrations for growth. It can not only grow aerobically but also anaerobically using ni-trate as electron acceptor. The strain described in this report is a free-living, motile, pleomor-phic, euryarchaeon, which was originally isolated from the solar salterns of Cabo Rojo, Puer-to Rico. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the halobacterial genus Halogeometricum, and this 3,944,467 bp long six replicon genome with its 3937 pro-tein-coding and 57 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Published
2009

31. Complete genome sequence of Halogeometricum borinquense type strain (PR3T)

Author

Malfatti, S, Malfatti, S, Tindall, BJ, Schneider, S, Fähnrich, R, Lapidus, A, LaButtii, K, Copeland, A, Del Rio, TG, Nolan, M, Chen, F, Lu-cas, S, Tice, H, Cheng, JF, Bruce, D, Goodwin, L, Pitluck, S, An-derson, I, Pati, A, Ivanova, N, Mavromatis, K, Chen, A, Pa-laniappan, K, D'haeseleer, P, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP, Chain, P, Malfatti, S, Malfatti, S, Tindall, BJ, Schneider, S, Fähnrich, R, Lapidus, A, LaButtii, K, Copeland, A, Del Rio, TG, Nolan, M, Chen, F, Lu-cas, S, Tice, H, Cheng, JF, Bruce, D, Goodwin, L, Pitluck, S, An-derson, I, Pati, A, Ivanova, N, Mavromatis, K, Chen, A, Pa-laniappan, K, D'haeseleer, P, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP, and Chain, P

Abstract

Halogeometricum borinquense Montalvo-Rodríguez et al. 1998 is the type species of the ge-nus, and is of phylogenetic interest because of its distinct location between the halobacterial genera Haloquadratum and Halosarcina. H. borinquense requires extremely high salt (NaCl) concentrations for growth. It can not only grow aerobically but also anaerobically using ni-trate as electron acceptor. The strain described in this report is a free-living, motile, pleomor-phic, euryarchaeon, which was originally isolated from the solar salterns of Cabo Rojo, Puer-to Rico. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the halobacterial genus Halogeometricum, and this 3,944,467 bp long six replicon genome with its 3937 pro-tein-coding and 57 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Published
2009

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