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30 results on '"Peay, Kabir"'

1. Potential for functional divergence in ectomycorrhizal fungal communities across a precipitation gradient

Author

Pellitier, Peter T, Pellitier, Peter T, Van Nuland, Michael, Salamov, Asaf, Grigoriev, Igor V, Peay, Kabir G, Pellitier, Peter T, Pellitier, Peter T, Van Nuland, Michael, Salamov, Asaf, Grigoriev, Igor V, and Peay, Kabir G

Abstract

Functional traits influence the assembly of microbial communities, but identifying these traits in the environment has remained challenging. We studied ectomycorrhizal fungal (EMF) communities inhabiting Populus trichocarpa roots distributed across a precipitation gradient in the Pacific Northwest, USA. We profiled these communities using taxonomic (meta-barcoding) and functional (metagenomic) approaches. We hypothesized that genes involved in fungal drought-stress tolerance and fungal mediated plant water uptake would be most abundant in drier soils. We were unable to detect support for this hypothesis; instead, the abundance of genes involved in melanin synthesis, hydrophobins, aquaporins, trehalose-synthases, and other gene families exhibited no significant shifts across the gradient. Finally, we studied variation in sequence homology for certain genes, finding that fungal communities in dry soils are composed of distinct aquaporin and hydrophobin gene sequences. Altogether, our results suggest that while EMF communities exhibit significant compositional shifts across this gradient, coupled functional turnover, at least as inferred using community metagenomics is limited. Accordingly, the consequences of these distinct EMF communities on plant water uptake remain critically unknown, and future studies targeting the expression of genes involved in drought stress tolerance are required.

Published
2024

2. A genomic catalog of Earth’s microbiomes

Author

Nayfach, Stephen, Roux, Simon, Seshadri, Rekha, Udwary, Daniel, Varghese, Neha, Schulz, Frederik, Wu, Dongying, Paez-Espino, David, Chen, I. Min, Huntemann, Marcel, Palaniappan, Krishna, Ladau, Joshua, Mukherjee, Supratim, Reddy, T. B.K., Nielsen, Torben, Kirton, Edward, Faria, José P., Edirisinghe, Janaka N., Henry, Christopher S., Jungbluth, Sean P., Chivian, Dylan, Dehal, Paramvir, Wood-Charlson, Elisha M., Arkin, Adam P., Tringe, Susannah G., Visel, Axel, Abreu, Helena, Acinas, Silvia G., Allen, Eric, Allen, Michelle A., Alteio, Lauren V., Andersen, Gary, Anesio, Alexandre M., Attwood, Graeme, Avila-Magaña, Viridiana, Badis, Yacine, Bailey, Jake, Baker, Brett, Baldrian, Petr, Barton, Hazel A., Beck, David A.C., Becraft, Eric D., Beller, Harry R., Beman, J. Michael, Bernier-Latmani, Rizlan, Berry, Timothy D., Bertagnolli, Anthony, Bertilsson, Stefan, Bhatnagar, Jennifer M., Bird, Jordan T., Blanchard, Jeffrey L., Blumer-Schuette, Sara E., Bohannan, Brendan, Borton, Mikayla A., Brady, Allyson, Brawley, Susan H., Brodie, Juliet, Brown, Steven, Brum, Jennifer R., Brune, Andreas, Bryant, Donald A., Buchan, Alison, Buckley, Daniel H., Buongiorno, Joy, Cadillo-Quiroz, Hinsby, Caffrey, Sean M., Campbell, Ashley N., Campbell, Barbara, Carr, Stephanie, Carroll, Jo Lynn, Cary, S. Craig, Cates, Anna M., Cattolico, Rose Ann, Cavicchioli, Ricardo, Chistoserdova, Ludmila, Coleman, Maureen L., Constant, Philippe, Conway, Jonathan M., Mac Cormack, Walter P., Crowe, Sean, Crump, Byron, Currie, Cameron, Daly, Rebecca, DeAngelis, Kristen M., Denef, Vincent, Denman, Stuart E., Desta, Adey, Dionisi, Hebe, Dodsworth, Jeremy, Dombrowski, Nina, Donohue, Timothy, Dopson, Mark, Driscoll, Timothy, Dunfield, Peter, Dupont, Christopher L., Dynarski, Katherine A., Edgcomb, Virginia, Edwards, Elizabeth A., Elshahed, Mostafa S., Figueroa, Israel, Flood, Beverly, Fortney, Nathaniel, Fortunato, Caroline S., Francis, Christopher, Gachon, Claire M.M., Garcia, Sarahi L., Gazitua, Maria C., Gentry, Terry, Gerwick, Lena, Gharechahi, Javad, Girguis, Peter, Gladden, John, Gradoville, Mary, Grasby, Stephen E., Gravuer, Kelly, Grettenberger, Christen L., Gruninger, Robert J., Guo, Jiarong, Habteselassie, Mussie Y., Hallam, Steven J., Hatzenpichler, Roland, Hausmann, Bela, Hazen, Terry C., Hedlund, Brian, Henny, Cynthia, Herfort, Lydie, Hernandez, Maria, Hershey, Olivia S., Hess, Matthias, Hollister, Emily B., Hug, Laura A., Hunt, Dana, Jansson, Janet, Jarett, Jessica, Kadnikov, Vitaly V., Kelly, Charlene, Kelly, Robert, Kelly, William, Kerfeld, Cheryl A., Kimbrel, Jeff, Klassen, Jonathan L., Konstantinidis, Konstantinos T., Lee, Laura L., Li, Wen Jun, Loder, Andrew J., Loy, Alexander, Lozada, Mariana, MacGregor, Barbara, Magnabosco, Cara, Maria da Silva, Aline, McKay, R. Michael, McMahon, Katherine, McSweeney, Chris S., Medina, Mónica, Meredith, Laura, Mizzi, Jessica, Mock, Thomas, Momper, Lily, Moran, Mary Ann, Morgan-Lang, Connor, Moser, Duane, Muyzer, Gerard, Myrold, David, Nash, Maisie, Nesbø, Camilla L., Neumann, Anthony P., Neumann, Rebecca B., Noguera, Daniel, Northen, Trent, Norton, Jeanette, Nowinski, Brent, Nüsslein, Klaus, O’Malley, Michelle A., Oliveira, Rafael S., Maia de Oliveira, Valeria, Onstott, Tullis, Osvatic, Jay, Ouyang, Yang, Pachiadaki, Maria, Parnell, Jacob, Partida-Martinez, Laila P., Peay, Kabir G., Pelletier, Dale, Peng, Xuefeng, Pester, Michael, Pett-Ridge, Jennifer, Peura, Sari, Pjevac, Petra, Plominsky, Alvaro M., Poehlein, Anja, Pope, Phillip B., Ravin, Nikolai, Redmond, Molly C., Reiss, Rebecca, Rich, Virginia, Rinke, Christian, Rodrigues, Jorge L.Mazza, Rodriguez-Reillo, William, Rossmassler, Karen, Sackett, Joshua, Salekdeh, Ghasem Hosseini, Saleska, Scott, Scarborough, Matthew, Schachtman, Daniel, Schadt, Christopher W., Schrenk, Matthew, Sczyrba, Alexander, Sengupta, Aditi, Setubal, Joao C., Shade, Ashley, Sharp, Christine, Sherman, David H., Shubenkova, Olga V., Sierra-Garcia, Isabel Natalia, Simister, Rachel, Simon, Holly, Sjöling, Sara, Slonczewski, Joan, Correa de Souza, Rafael Soares, Spear, John R., Stegen, James C., Stepanauskas, Ramunas, Stewart, Frank, Suen, Garret, Sullivan, Matthew, Sumner, Dawn, Swan, Brandon K., Swingley, Wesley, Tarn, Jonathan, Taylor, Gordon T., Teeling, Hanno, Tekere, Memory, Teske, Andreas, Thomas, Torsten, Thrash, Cameron, Tiedje, James, Ting, Claire S., Tully, Benjamin, Ulloa, Osvlado, Valentine, David L., Van Goethem, Marc W., VanderGheynst, Jean, Verbeke, Tobin J., Vollmers, John, Vuillemin, Aurèle, Waldo, Nicholas B., Williams, Timothy J., Tyson, Gene, Woodcroft, Ben, IMG/M Data Consortium, Nayfach, Stephen, Roux, Simon, Seshadri, Rekha, Udwary, Daniel, Varghese, Neha, Schulz, Frederik, Wu, Dongying, Paez-Espino, David, Chen, I. Min, Huntemann, Marcel, Palaniappan, Krishna, Ladau, Joshua, Mukherjee, Supratim, Reddy, T. B.K., Nielsen, Torben, Kirton, Edward, Faria, José P., Edirisinghe, Janaka N., Henry, Christopher S., Jungbluth, Sean P., Chivian, Dylan, Dehal, Paramvir, Wood-Charlson, Elisha M., Arkin, Adam P., Tringe, Susannah G., Visel, Axel, Abreu, Helena, Acinas, Silvia G., Allen, Eric, Allen, Michelle A., Alteio, Lauren V., Andersen, Gary, Anesio, Alexandre M., Attwood, Graeme, Avila-Magaña, Viridiana, Badis, Yacine, Bailey, Jake, Baker, Brett, Baldrian, Petr, Barton, Hazel A., Beck, David A.C., Becraft, Eric D., Beller, Harry R., Beman, J. Michael, Bernier-Latmani, Rizlan, Berry, Timothy D., Bertagnolli, Anthony, Bertilsson, Stefan, Bhatnagar, Jennifer M., Bird, Jordan T., Blanchard, Jeffrey L., Blumer-Schuette, Sara E., Bohannan, Brendan, Borton, Mikayla A., Brady, Allyson, Brawley, Susan H., Brodie, Juliet, Brown, Steven, Brum, Jennifer R., Brune, Andreas, Bryant, Donald A., Buchan, Alison, Buckley, Daniel H., Buongiorno, Joy, Cadillo-Quiroz, Hinsby, Caffrey, Sean M., Campbell, Ashley N., Campbell, Barbara, Carr, Stephanie, Carroll, Jo Lynn, Cary, S. Craig, Cates, Anna M., Cattolico, Rose Ann, Cavicchioli, Ricardo, Chistoserdova, Ludmila, Coleman, Maureen L., Constant, Philippe, Conway, Jonathan M., Mac Cormack, Walter P., Crowe, Sean, Crump, Byron, Currie, Cameron, Daly, Rebecca, DeAngelis, Kristen M., Denef, Vincent, Denman, Stuart E., Desta, Adey, Dionisi, Hebe, Dodsworth, Jeremy, Dombrowski, Nina, Donohue, Timothy, Dopson, Mark, Driscoll, Timothy, Dunfield, Peter, Dupont, Christopher L., Dynarski, Katherine A., Edgcomb, Virginia, Edwards, Elizabeth A., Elshahed, Mostafa S., Figueroa, Israel, Flood, Beverly, Fortney, Nathaniel, Fortunato, Caroline S., Francis, Christopher, Gachon, Claire M.M., Garcia, Sarahi L., Gazitua, Maria C., Gentry, Terry, Gerwick, Lena, Gharechahi, Javad, Girguis, Peter, Gladden, John, Gradoville, Mary, Grasby, Stephen E., Gravuer, Kelly, Grettenberger, Christen L., Gruninger, Robert J., Guo, Jiarong, Habteselassie, Mussie Y., Hallam, Steven J., Hatzenpichler, Roland, Hausmann, Bela, Hazen, Terry C., Hedlund, Brian, Henny, Cynthia, Herfort, Lydie, Hernandez, Maria, Hershey, Olivia S., Hess, Matthias, Hollister, Emily B., Hug, Laura A., Hunt, Dana, Jansson, Janet, Jarett, Jessica, Kadnikov, Vitaly V., Kelly, Charlene, Kelly, Robert, Kelly, William, Kerfeld, Cheryl A., Kimbrel, Jeff, Klassen, Jonathan L., Konstantinidis, Konstantinos T., Lee, Laura L., Li, Wen Jun, Loder, Andrew J., Loy, Alexander, Lozada, Mariana, MacGregor, Barbara, Magnabosco, Cara, Maria da Silva, Aline, McKay, R. Michael, McMahon, Katherine, McSweeney, Chris S., Medina, Mónica, Meredith, Laura, Mizzi, Jessica, Mock, Thomas, Momper, Lily, Moran, Mary Ann, Morgan-Lang, Connor, Moser, Duane, Muyzer, Gerard, Myrold, David, Nash, Maisie, Nesbø, Camilla L., Neumann, Anthony P., Neumann, Rebecca B., Noguera, Daniel, Northen, Trent, Norton, Jeanette, Nowinski, Brent, Nüsslein, Klaus, O’Malley, Michelle A., Oliveira, Rafael S., Maia de Oliveira, Valeria, Onstott, Tullis, Osvatic, Jay, Ouyang, Yang, Pachiadaki, Maria, Parnell, Jacob, Partida-Martinez, Laila P., Peay, Kabir G., Pelletier, Dale, Peng, Xuefeng, Pester, Michael, Pett-Ridge, Jennifer, Peura, Sari, Pjevac, Petra, Plominsky, Alvaro M., Poehlein, Anja, Pope, Phillip B., Ravin, Nikolai, Redmond, Molly C., Reiss, Rebecca, Rich, Virginia, Rinke, Christian, Rodrigues, Jorge L.Mazza, Rodriguez-Reillo, William, Rossmassler, Karen, Sackett, Joshua, Salekdeh, Ghasem Hosseini, Saleska, Scott, Scarborough, Matthew, Schachtman, Daniel, Schadt, Christopher W., Schrenk, Matthew, Sczyrba, Alexander, Sengupta, Aditi, Setubal, Joao C., Shade, Ashley, Sharp, Christine, Sherman, David H., Shubenkova, Olga V., Sierra-Garcia, Isabel Natalia, Simister, Rachel, Simon, Holly, Sjöling, Sara, Slonczewski, Joan, Correa de Souza, Rafael Soares, Spear, John R., Stegen, James C., Stepanauskas, Ramunas, Stewart, Frank, Suen, Garret, Sullivan, Matthew, Sumner, Dawn, Swan, Brandon K., Swingley, Wesley, Tarn, Jonathan, Taylor, Gordon T., Teeling, Hanno, Tekere, Memory, Teske, Andreas, Thomas, Torsten, Thrash, Cameron, Tiedje, James, Ting, Claire S., Tully, Benjamin, Ulloa, Osvlado, Valentine, David L., Van Goethem, Marc W., VanderGheynst, Jean, Verbeke, Tobin J., Vollmers, John, Vuillemin, Aurèle, Waldo, Nicholas B., Williams, Timothy J., Tyson, Gene, Woodcroft, Ben, and IMG/M Data Consortium

Abstract

The reconstruction of bacterial and archaeal genomes from shotgun metagenomes has enabled insights into the ecology and evolution of environmental and host-associated microbiomes. Here we applied this approach to >10,000 metagenomes collected from diverse habitats covering all of Earth’s continents and oceans, including metagenomes from human and animal hosts, engineered environments, and natural and agricultural soils, to capture extant microbial, metabolic and functional potential. This comprehensive catalog includes 52,515 metagenome-assembled genomes representing 12,556 novel candidate species-level operational taxonomic units spanning 135 phyla. The catalog expands the known phylogenetic diversity of bacteria and archaea by 44% and is broadly available for streamlined comparative analyses, interactive exploration, metabolic modeling and bulk download. We demonstrate the utility of this collection for understanding secondary-metabolite biosynthetic potential and for resolving thousands of new host linkages to uncultivated viruses. This resource underscores the value of genome-centric approaches for revealing genomic properties of uncultivated microorganisms that affect ecosystem processes.

Published
2021

3. Decadal changes in fire frequencies shift tree communities and functional traits

Author

Pellegrini, Adam F. A., Refsland, Tyler, Averill, Colin, Terrer, César, Staver, A. Carla, Brockway, Dale G., Caprio, Anthony, Clatterbuck, Wayne, Coetsee, Corli, Haywood, James D., Hobbie, Sarah E., Hoffmann, William A., Kush, John, Lewis, Tom, Moser, W. Keith, Overby, Steven T., Patterson, William A., Peay, Kabir G., Reich, Peter B., Ryan, Casey, Sayer, Mary Anne S., Scharenbroch, Bryant C., Schoennagel, Tania, Smith, Gabriel Reuben, Stephan, Kirsten, Swanston, Chris, Turner, Monica G., Varner, J. Morgan, Jackson, Robert B., Pellegrini, Adam F. A., Refsland, Tyler, Averill, Colin, Terrer, César, Staver, A. Carla, Brockway, Dale G., Caprio, Anthony, Clatterbuck, Wayne, Coetsee, Corli, Haywood, James D., Hobbie, Sarah E., Hoffmann, William A., Kush, John, Lewis, Tom, Moser, W. Keith, Overby, Steven T., Patterson, William A., Peay, Kabir G., Reich, Peter B., Ryan, Casey, Sayer, Mary Anne S., Scharenbroch, Bryant C., Schoennagel, Tania, Smith, Gabriel Reuben, Stephan, Kirsten, Swanston, Chris, Turner, Monica G., Varner, J. Morgan, and Jackson, Robert B.

Abstract

Global change has resulted in chronic shifts in fire regimes. Variability in the sensitivity of tree communities to multi-decadal changes in fire regimes is critical to anticipating shifts in ecosystem structure and function, yet remains poorly understood. Here, we address the overall effects of fire on tree communities and the factors controlling their sensitivity in 29 sites that experienced multi-decadal alterations in fire frequencies in savanna and forest ecosystems across tropical and temperate regions. Fire had a strong overall effect on tree communities, with an average fire frequency (one fire every three years) reducing stem density by 48% and basal area by 53% after 50 years, relative to unburned plots. The largest changes occurred in savanna ecosystems and in sites with strong wet seasons or strong dry seasons, pointing to fire characteristics and species composition as important. Analyses of functional traits highlighted the impact of fire-driven changes in soil nutrients because frequent burning favoured trees with low biomass nitrogen and phosphorus content, and with more efficient nitrogen acquisition through ectomycorrhizal symbioses. Taken together, the response of trees to altered fire frequencies depends both on climatic and vegetation determinants of fire behaviour and tree growth, and the coupling between fire-driven nutrient losses and plant traits.

Published
2021

4. Decadal changes in fire frequencies shift tree communities and functional traits

Author

Pellegrini, Adam F. A., Refsland, Tyler, Averill, Colin, Terrer, César, Staver, A. Carla, Brockway, Dale G., Caprio, Anthony, Clatterbuck, Wayne, Coetsee, Corli, Haywood, James D., Hobbie, Sarah E., Hoffmann, William A., Kush, John, Lewis, Tom, Moser, W. Keith, Overby, Steven T., Patterson, William A., Peay, Kabir G., Reich, Peter B., Ryan, Casey, Sayer, Mary Anne S., Scharenbroch, Bryant C., Schoennagel, Tania, Smith, Gabriel Reuben, Stephan, Kirsten, Swanston, Chris, Turner, Monica G., Varner, J. Morgan, Jackson, Robert B., Pellegrini, Adam F. A., Refsland, Tyler, Averill, Colin, Terrer, César, Staver, A. Carla, Brockway, Dale G., Caprio, Anthony, Clatterbuck, Wayne, Coetsee, Corli, Haywood, James D., Hobbie, Sarah E., Hoffmann, William A., Kush, John, Lewis, Tom, Moser, W. Keith, Overby, Steven T., Patterson, William A., Peay, Kabir G., Reich, Peter B., Ryan, Casey, Sayer, Mary Anne S., Scharenbroch, Bryant C., Schoennagel, Tania, Smith, Gabriel Reuben, Stephan, Kirsten, Swanston, Chris, Turner, Monica G., Varner, J. Morgan, and Jackson, Robert B.

Abstract

Global change has resulted in chronic shifts in fire regimes. Variability in the sensitivity of tree communities to multi-decadal changes in fire regimes is critical to anticipating shifts in ecosystem structure and function, yet remains poorly understood. Here, we address the overall effects of fire on tree communities and the factors controlling their sensitivity in 29 sites that experienced multi-decadal alterations in fire frequencies in savanna and forest ecosystems across tropical and temperate regions. Fire had a strong overall effect on tree communities, with an average fire frequency (one fire every three years) reducing stem density by 48% and basal area by 53% after 50 years, relative to unburned plots. The largest changes occurred in savanna ecosystems and in sites with strong wet seasons or strong dry seasons, pointing to fire characteristics and species composition as important. Analyses of functional traits highlighted the impact of fire-driven changes in soil nutrients because frequent burning favoured trees with low biomass nitrogen and phosphorus content, and with more efficient nitrogen acquisition through ectomycorrhizal symbioses. Taken together, the response of trees to altered fire frequencies depends both on climatic and vegetation determinants of fire behaviour and tree growth, and the coupling between fire-driven nutrient losses and plant traits.

Published
2021

5. Decadal changes in fire frequencies shift tree communities and functional traits

Author

Pellegrini, Adam F. A., Refsland, Tyler, Averill, Colin, Terrer, César, Staver, A. Carla, Brockway, Dale G., Caprio, Anthony, Clatterbuck, Wayne, Coetsee, Corli, Haywood, James D., Hobbie, Sarah E., Hoffmann, William A., Kush, John, Lewis, Tom, Moser, W. Keith, Overby, Steven T., Patterson, William A., Peay, Kabir G., Reich, Peter B., Ryan, Casey, Sayer, Mary Anne S., Scharenbroch, Bryant C., Schoennagel, Tania, Smith, Gabriel Reuben, Stephan, Kirsten, Swanston, Chris, Turner, Monica G., Varner, J. Morgan, Jackson, Robert B., Pellegrini, Adam F. A., Refsland, Tyler, Averill, Colin, Terrer, César, Staver, A. Carla, Brockway, Dale G., Caprio, Anthony, Clatterbuck, Wayne, Coetsee, Corli, Haywood, James D., Hobbie, Sarah E., Hoffmann, William A., Kush, John, Lewis, Tom, Moser, W. Keith, Overby, Steven T., Patterson, William A., Peay, Kabir G., Reich, Peter B., Ryan, Casey, Sayer, Mary Anne S., Scharenbroch, Bryant C., Schoennagel, Tania, Smith, Gabriel Reuben, Stephan, Kirsten, Swanston, Chris, Turner, Monica G., Varner, J. Morgan, and Jackson, Robert B.

Abstract

Global change has resulted in chronic shifts in fire regimes. Variability in the sensitivity of tree communities to multi-decadal changes in fire regimes is critical to anticipating shifts in ecosystem structure and function, yet remains poorly understood. Here, we address the overall effects of fire on tree communities and the factors controlling their sensitivity in 29 sites that experienced multi-decadal alterations in fire frequencies in savanna and forest ecosystems across tropical and temperate regions. Fire had a strong overall effect on tree communities, with an average fire frequency (one fire every three years) reducing stem density by 48% and basal area by 53% after 50 years, relative to unburned plots. The largest changes occurred in savanna ecosystems and in sites with strong wet seasons or strong dry seasons, pointing to fire characteristics and species composition as important. Analyses of functional traits highlighted the impact of fire-driven changes in soil nutrients because frequent burning favoured trees with low biomass nitrogen and phosphorus content, and with more efficient nitrogen acquisition through ectomycorrhizal symbioses. Taken together, the response of trees to altered fire frequencies depends both on climatic and vegetation determinants of fire behaviour and tree growth, and the coupling between fire-driven nutrient losses and plant traits.

Published
2021

6. A meta-analysis of global fungal distribution reveals climate-driven patterns.

Author

Větrovský, Tomáš, Větrovský, Tomáš, Kohout, Petr, Kopecký, Martin, Machac, Antonin, Man, Matěj, Bahnmann, Barbara Doreen, Brabcová, Vendula, Choi, Jinlyung, Meszárošová, Lenka, Human, Zander Rainier, Lepinay, Clémentine, Lladó, Salvador, López-Mondéjar, Rubén, Martinović, Tijana, Mašínová, Tereza, Morais, Daniel, Navrátilová, Diana, Odriozola, Iñaki, Štursová, Martina, Švec, Karel, Tláskal, Vojtěch, Urbanová, Michaela, Wan, Joe, Žifčáková, Lucia, Howe, Adina, Ladau, Joshua, Peay, Kabir Gabriel, Storch, David, Wild, Jan, Baldrian, Petr, Větrovský, Tomáš, Větrovský, Tomáš, Kohout, Petr, Kopecký, Martin, Machac, Antonin, Man, Matěj, Bahnmann, Barbara Doreen, Brabcová, Vendula, Choi, Jinlyung, Meszárošová, Lenka, Human, Zander Rainier, Lepinay, Clémentine, Lladó, Salvador, López-Mondéjar, Rubén, Martinović, Tijana, Mašínová, Tereza, Morais, Daniel, Navrátilová, Diana, Odriozola, Iñaki, Štursová, Martina, Švec, Karel, Tláskal, Vojtěch, Urbanová, Michaela, Wan, Joe, Žifčáková, Lucia, Howe, Adina, Ladau, Joshua, Peay, Kabir Gabriel, Storch, David, Wild, Jan, and Baldrian, Petr

Abstract

The evolutionary and environmental factors that shape fungal biogeography are incompletely understood. Here, we assemble a large dataset consisting of previously generated mycobiome data linked to specific geographical locations across the world. We use this dataset to describe the distribution of fungal taxa and to look for correlations with different environmental factors such as climate, soil and vegetation variables. Our meta-study identifies climate as an important driver of different aspects of fungal biogeography, including the global distribution of common fungi as well as the composition and diversity of fungal communities. In our analysis, fungal diversity is concentrated at high latitudes, in contrast with the opposite pattern previously shown for plants and other organisms. Mycorrhizal fungi appear to have narrower climatic tolerances than pathogenic fungi. We speculate that climate change could affect ecosystem functioning because of the narrow climatic tolerances of key fungal taxa.

Published
2019

7. A meta-analysis of global fungal distribution reveals climate-driven patterns

Author

Větrovský, Tomáš, Kohout, Petr, Kopecký, Martin, Machac, Antonin, Man, Matěj, Bahnmann, Barbara Doreen, Brabcová, Vendula, Choi, Jinlyung, Meszárošová, Lenka, Human, Zander Rainier, Lepinay, Clémentine, Lladó, Salvador, López-Mondéjar, Rubén, Martinović, Tijana, Mašínová, Tereza, Morais, Daniel, Navrátilová, Diana, Odriozola, Iñaki, Štursová, Martina, Švec, Karel, Tláskal, Vojtěch, Urbanová, Michaela, Wan, Joe, Žifčáková, Lucia, Howe, Adina, Ladau, Joshua, Peay, Kabir Gabriel, Storch, David, Wild, Jan, Baldrian, Petr, Větrovský, Tomáš, Kohout, Petr, Kopecký, Martin, Machac, Antonin, Man, Matěj, Bahnmann, Barbara Doreen, Brabcová, Vendula, Choi, Jinlyung, Meszárošová, Lenka, Human, Zander Rainier, Lepinay, Clémentine, Lladó, Salvador, López-Mondéjar, Rubén, Martinović, Tijana, Mašínová, Tereza, Morais, Daniel, Navrátilová, Diana, Odriozola, Iñaki, Štursová, Martina, Švec, Karel, Tláskal, Vojtěch, Urbanová, Michaela, Wan, Joe, Žifčáková, Lucia, Howe, Adina, Ladau, Joshua, Peay, Kabir Gabriel, Storch, David, Wild, Jan, and Baldrian, Petr

Abstract

The evolutionary and environmental factors that shape fungal biogeography are incompletely understood. Here, we assemble a large dataset consisting of previously generated mycobiome data linked to specific geographical locations across the world. We use this dataset to describe the distribution of fungal taxa and to look for correlations with different environmental factors such as climate, soil and vegetation variables. Our meta-study identifies climate as an important driver of different aspects of fungal biogeography, including the global distribution of common fungi as well as the composition and diversity of fungal communities. In our analysis, fungal diversity is concentrated at high latitudes, in contrast with the opposite pattern previously shown for plants and other organisms. Mycorrhizal fungi appear to have narrower climatic tolerances than pathogenic fungi. We speculate that climate change could affect ecosystem functioning because of the narrow climatic tolerances of key fungal taxa.

Published
2019

8. A meta-analysis of global fungal distribution reveals climate-driven patterns.

Author

Větrovský, Tomáš, Větrovský, Tomáš, Kohout, Petr, Kopecký, Martin, Machac, Antonin, Man, Matěj, Bahnmann, Barbara Doreen, Brabcová, Vendula, Choi, Jinlyung, Meszárošová, Lenka, Human, Zander Rainier, Lepinay, Clémentine, Lladó, Salvador, López-Mondéjar, Rubén, Martinović, Tijana, Mašínová, Tereza, Morais, Daniel, Navrátilová, Diana, Odriozola, Iñaki, Štursová, Martina, Švec, Karel, Tláskal, Vojtěch, Urbanová, Michaela, Wan, Joe, Žifčáková, Lucia, Howe, Adina, Ladau, Joshua, Peay, Kabir Gabriel, Storch, David, Wild, Jan, Baldrian, Petr, Větrovský, Tomáš, Větrovský, Tomáš, Kohout, Petr, Kopecký, Martin, Machac, Antonin, Man, Matěj, Bahnmann, Barbara Doreen, Brabcová, Vendula, Choi, Jinlyung, Meszárošová, Lenka, Human, Zander Rainier, Lepinay, Clémentine, Lladó, Salvador, López-Mondéjar, Rubén, Martinović, Tijana, Mašínová, Tereza, Morais, Daniel, Navrátilová, Diana, Odriozola, Iñaki, Štursová, Martina, Švec, Karel, Tláskal, Vojtěch, Urbanová, Michaela, Wan, Joe, Žifčáková, Lucia, Howe, Adina, Ladau, Joshua, Peay, Kabir Gabriel, Storch, David, Wild, Jan, and Baldrian, Petr

Abstract

The evolutionary and environmental factors that shape fungal biogeography are incompletely understood. Here, we assemble a large dataset consisting of previously generated mycobiome data linked to specific geographical locations across the world. We use this dataset to describe the distribution of fungal taxa and to look for correlations with different environmental factors such as climate, soil and vegetation variables. Our meta-study identifies climate as an important driver of different aspects of fungal biogeography, including the global distribution of common fungi as well as the composition and diversity of fungal communities. In our analysis, fungal diversity is concentrated at high latitudes, in contrast with the opposite pattern previously shown for plants and other organisms. Mycorrhizal fungi appear to have narrower climatic tolerances than pathogenic fungi. We speculate that climate change could affect ecosystem functioning because of the narrow climatic tolerances of key fungal taxa.

Published
2019

9. A meta-analysis of global fungal distribution reveals climate-driven patterns

Author

Větrovský, Tomáš, Kohout, Petr, Kopecký, Martin, Machac, Antonin, Man, Matěj, Bahnmann, Barbara Doreen, Brabcová, Vendula, Choi, Jinlyung, Meszárošová, Lenka, Human, Zander Rainier, Lepinay, Clémentine, Lladó, Salvador, López-Mondéjar, Rubén, Martinović, Tijana, Mašínová, Tereza, Morais, Daniel, Navrátilová, Diana, Odriozola, Iñaki, Štursová, Martina, Švec, Karel, Tláskal, Vojtěch, Urbanová, Michaela, Wan, Joe, Žifčáková, Lucia, Howe, Adina, Ladau, Joshua, Peay, Kabir Gabriel, Storch, David, Wild, Jan, Baldrian, Petr, Větrovský, Tomáš, Kohout, Petr, Kopecký, Martin, Machac, Antonin, Man, Matěj, Bahnmann, Barbara Doreen, Brabcová, Vendula, Choi, Jinlyung, Meszárošová, Lenka, Human, Zander Rainier, Lepinay, Clémentine, Lladó, Salvador, López-Mondéjar, Rubén, Martinović, Tijana, Mašínová, Tereza, Morais, Daniel, Navrátilová, Diana, Odriozola, Iñaki, Štursová, Martina, Švec, Karel, Tláskal, Vojtěch, Urbanová, Michaela, Wan, Joe, Žifčáková, Lucia, Howe, Adina, Ladau, Joshua, Peay, Kabir Gabriel, Storch, David, Wild, Jan, and Baldrian, Petr

Abstract

The evolutionary and environmental factors that shape fungal biogeography are incompletely understood. Here, we assemble a large dataset consisting of previously generated mycobiome data linked to specific geographical locations across the world. We use this dataset to describe the distribution of fungal taxa and to look for correlations with different environmental factors such as climate, soil and vegetation variables. Our meta-study identifies climate as an important driver of different aspects of fungal biogeography, including the global distribution of common fungi as well as the composition and diversity of fungal communities. In our analysis, fungal diversity is concentrated at high latitudes, in contrast with the opposite pattern previously shown for plants and other organisms. Mycorrhizal fungi appear to have narrower climatic tolerances than pathogenic fungi. We speculate that climate change could affect ecosystem functioning because of the narrow climatic tolerances of key fungal taxa.

Published
2019

10. A meta-analysis of global fungal distribution reveals climate-driven patterns

Author

Větrovský, Tomáš, Kohout, Petr, Kopecký, Martin, Machac, Antonin, Man, Matěj, Bahnmann, Barbara Doreen, Brabcová, Vendula, Choi, Jinlyung, Meszárošová, Lenka, Human, Zander Rainier, Lepinay, Clémentine, Lladó, Salvador, López-Mondéjar, Rubén, Martinović, Tijana, Mašínová, Tereza, Morais, Daniel, Navrátilová, Diana, Odriozola, Iñaki, Štursová, Martina, Švec, Karel, Tláskal, Vojtěch, Urbanová, Michaela, Wan, Joe, Žifčáková, Lucia, Howe, Adina, Ladau, Joshua, Peay, Kabir Gabriel, Storch, David, Wild, Jan, Baldrian, Petr, Větrovský, Tomáš, Kohout, Petr, Kopecký, Martin, Machac, Antonin, Man, Matěj, Bahnmann, Barbara Doreen, Brabcová, Vendula, Choi, Jinlyung, Meszárošová, Lenka, Human, Zander Rainier, Lepinay, Clémentine, Lladó, Salvador, López-Mondéjar, Rubén, Martinović, Tijana, Mašínová, Tereza, Morais, Daniel, Navrátilová, Diana, Odriozola, Iñaki, Štursová, Martina, Švec, Karel, Tláskal, Vojtěch, Urbanová, Michaela, Wan, Joe, Žifčáková, Lucia, Howe, Adina, Ladau, Joshua, Peay, Kabir Gabriel, Storch, David, Wild, Jan, and Baldrian, Petr

Abstract

The evolutionary and environmental factors that shape fungal biogeography are incompletely understood. Here, we assemble a large dataset consisting of previously generated mycobiome data linked to specific geographical locations across the world. We use this dataset to describe the distribution of fungal taxa and to look for correlations with different environmental factors such as climate, soil and vegetation variables. Our meta-study identifies climate as an important driver of different aspects of fungal biogeography, including the global distribution of common fungi as well as the composition and diversity of fungal communities. In our analysis, fungal diversity is concentrated at high latitudes, in contrast with the opposite pattern previously shown for plants and other organisms. Mycorrhizal fungi appear to have narrower climatic tolerances than pathogenic fungi. We speculate that climate change could affect ecosystem functioning because of the narrow climatic tolerances of key fungal taxa.

Published
2019

11. Core microbiomes for sustainable agroecosystems

Author

Toju, Hirokazu, Peay, Kabir G., Yamamichi, Masato, Narisawa, Kazuhiko, Hiruma, Kei, Naito, Ken, Fukuda, Shinji, Ushio, Masayuki, Nakaoka, Shinji, Onoda, Yusuke, Yoshida, Kentaro, Schlaeppi, Klaus, Bai, Yang, Sugiura, Ryo, Ichihashi, Yasunori, Minamisawa, Kiwamu, Kiers, E. Toby, Toju, Hirokazu, Peay, Kabir G., Yamamichi, Masato, Narisawa, Kazuhiko, Hiruma, Kei, Naito, Ken, Fukuda, Shinji, Ushio, Masayuki, Nakaoka, Shinji, Onoda, Yusuke, Yoshida, Kentaro, Schlaeppi, Klaus, Bai, Yang, Sugiura, Ryo, Ichihashi, Yasunori, Minamisawa, Kiwamu, and Kiers, E. Toby

Abstract

In an era of ecosystem degradation and climate change, maximizing microbial functions in agroecosystems has become a prerequisite for the future of global agriculture. However, managing species-rich communities of plant-associated microbiomes remains a major challenge. Here, we propose interdisciplinary research strategies to optimize microbiome functions in agroecosystems. Informatics now allows us to identify members and characteristics of 'core microbiomes', which may be deployed to organize otherwise uncontrollable dynamics of resident microbiomes. Integration of microfluidics, robotics and machine learning provides novel ways to capitalize on core microbiomes for increasing resource-efficiency and stress-resistance of agroecosystems. © 2018 The Author(s).

Published
2018

12. Erratum to: Core microbiomes for sustainable agroecosystems

Author

Toju, Hirokazu, Peay, Kabir G., Yamamichi, Masato, Narisawa, Kazuhiko, Hiruma, Kei, Naito, Ken, Fukuda, Shinji, Ushio, Masayuki, Nakaoka, Shinji, Onoda, Yusuke, Yoshida, Kentaro, Schlaeppi, Klaus, Bai, Yang, Sugiura, Ryo, Ichihashi, Yasunori, Minamisawa, Kiwamu, Kiers, E. Toby, Toju, Hirokazu, Peay, Kabir G., Yamamichi, Masato, Narisawa, Kazuhiko, Hiruma, Kei, Naito, Ken, Fukuda, Shinji, Ushio, Masayuki, Nakaoka, Shinji, Onoda, Yusuke, Yoshida, Kentaro, Schlaeppi, Klaus, Bai, Yang, Sugiura, Ryo, Ichihashi, Yasunori, Minamisawa, Kiwamu, and Kiers, E. Toby

Abstract

Owing to a technical error, this Perspective was originally published without its received and accepted dates; the dates “Received: 31 December 2017; Accepted: 23 March 2018” have now been included in all versions. © 2018, Springer Nature Limited.

Published
2018

13. Testing the ecological stability of ectomycorrhizal symbiosis: effects of heat, ash and mycorrhizal colonization on Pinus muricata seedling performance

Author

Peay, Kabir G., Peay, Kabir G., Bruns, Thomas D., Garbelotto, Matteo, Peay, Kabir G., Peay, Kabir G., Bruns, Thomas D., and Garbelotto, Matteo

Abstract

Understanding how abiotic conditions mediate the outcome of biotic interactions is a key question in community ecology. This is particularly interesting in the case of mutualisms because changing environmental conditions may be a source of evolutionary or ecological instability in the relationship between symbiotic partners. For the mycorrhizal symbiosis, elevated nutrient levels may make the carbon cost to plants of supporting mycorrhizal fungi outweigh the benefits of mycorrhizal nutrient acquisition. In this study, we simulated the effects of post-fire nutrient enrichment on the ectomycorrhizal symbiosis between Rhizopogon occidentalis and Pinus muricata by using factorial combinations of soil heating, ash addition and mycorrhizal colonization. In general, the presence of R. occidentalis and the heat and ash treatments increased growth of P. muricata seedlings. However, significant interactions between the treatments indicated that there were context-dependent effects on seedling growth. Soil heating increased soil mineral nitrogen content, but did not decrease the benefit of mycorrhizal colonization relative to unheated controls. This appeared to be driven by a decrease in the proportion of the root system occupied by R. occidentalis, indicating that host-plants can optimize colonization in a way that maximizes growth. Because seedlings in heat-treated soils were larger than unheated controls, reduced percent colonization did not cause any decrease in fungal biomass in heat-treated soils. Since there was no decrease in the performance of either partner, our results show that, in this system, ectomycorrhizal mutualisms are likely robust within the natural degree of environmental variability caused by moderate intensity wildfires.

Published
2010

14. Testing the ecological stability of ectomycorrhizal symbiosis: effects of heat, ash and mycorrhizal colonization on Pinus muricata seedling performance

Author

Peay, Kabir G., Peay, Kabir G., Bruns, Thomas D., Garbelotto, Matteo, Peay, Kabir G., Peay, Kabir G., Bruns, Thomas D., and Garbelotto, Matteo

Abstract

Understanding how abiotic conditions mediate the outcome of biotic interactions is a key question in community ecology. This is particularly interesting in the case of mutualisms because changing environmental conditions may be a source of evolutionary or ecological instability in the relationship between symbiotic partners. For the mycorrhizal symbiosis, elevated nutrient levels may make the carbon cost to plants of supporting mycorrhizal fungi outweigh the benefits of mycorrhizal nutrient acquisition. In this study, we simulated the effects of post-fire nutrient enrichment on the ectomycorrhizal symbiosis between Rhizopogon occidentalis and Pinus muricata by using factorial combinations of soil heating, ash addition and mycorrhizal colonization. In general, the presence of R. occidentalis and the heat and ash treatments increased growth of P. muricata seedlings. However, significant interactions between the treatments indicated that there were context-dependent effects on seedling growth. Soil heating increased soil mineral nitrogen content, but did not decrease the benefit of mycorrhizal colonization relative to unheated controls. This appeared to be driven by a decrease in the proportion of the root system occupied by R. occidentalis, indicating that host-plants can optimize colonization in a way that maximizes growth. Because seedlings in heat-treated soils were larger than unheated controls, reduced percent colonization did not cause any decrease in fungal biomass in heat-treated soils. Since there was no decrease in the performance of either partner, our results show that, in this system, ectomycorrhizal mutualisms are likely robust within the natural degree of environmental variability caused by moderate intensity wildfires.

Published
2010

15. Controls of nitrogen cycling evaluated along a well-characterized climate gradient

Author

von Sperber, Christian, von Sperber, Christian, Chadwick, Oliver A, Casciotti, Karen L, Peay, Kabir G, Francis, Christopher A, Kim, Amy E, Vitousek, Peter M, von Sperber, Christian, von Sperber, Christian, Chadwick, Oliver A, Casciotti, Karen L, Peay, Kabir G, Francis, Christopher A, Kim, Amy E, and Vitousek, Peter M

Published
2017

16. Controls of nitrogen cycling evaluated along a well-characterized climate gradient

Author

von Sperber, Christian, von Sperber, Christian, Chadwick, Oliver A, Casciotti, Karen L, Peay, Kabir G, Francis, Christopher A, Kim, Amy E, Vitousek, Peter M, von Sperber, Christian, von Sperber, Christian, Chadwick, Oliver A, Casciotti, Karen L, Peay, Kabir G, Francis, Christopher A, Kim, Amy E, and Vitousek, Peter M

Published
2017

17. Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes.

Author

Branco, Sara, Branco, Sara, Bi, Ke, Liao, Hui-Ling, Gladieux, Pierre, Badouin, Hélène, Ellison, Christopher E, Nguyen, Nhu H, Vilgalys, Rytas, Peay, Kabir G, Taylor, John W, Bruns, Thomas D, Branco, Sara, Branco, Sara, Bi, Ke, Liao, Hui-Ling, Gladieux, Pierre, Badouin, Hélène, Ellison, Christopher E, Nguyen, Nhu H, Vilgalys, Rytas, Peay, Kabir G, Taylor, John W, and Bruns, Thomas D

Abstract

Recent advancements in sequencing technology allowed researchers to better address the patterns and mechanisms involved in microbial environmental adaptation at large spatial scales. Here we investigated the genomic basis of adaptation to climate at the continental scale in Suillus brevipes, an ectomycorrhizal fungus symbiotically associated with the roots of pine trees. We used genomic data from 55 individuals in seven locations across North America to perform genome scans to detect signatures of positive selection and assess whether temperature and precipitation were associated with genetic differentiation. We found that S. brevipes exhibited overall strong population differentiation, with potential admixture in Canadian populations. This species also displayed genomic signatures of positive selection as well as genomic sites significantly associated with distinct climatic regimes and abiotic environmental parameters. These genomic regions included genes involved in transmembrane transport of substances and helicase activity potentially involved in cold stress response. Our study sheds light on large-scale environmental adaptation in fungi by identifying putative adaptive genes and providing a framework to further investigate the genetic basis of fungal adaptation.

Published
2017

18. Competition-function tradeoffs in ectomycorrhizal fungi.

Author

Moeller, Holly V, Moeller, Holly V, Peay, Kabir G, Moeller, Holly V, Moeller, Holly V, and Peay, Kabir G

Abstract

Background. The extent to which ectomycorrhizal fungi mediate primary production, carbon storage, and nutrient remineralization in terrestrial ecosystems depends upon fungal community composition. However, the factors that govern community composition at the root system scale are not well understood. Here, we explore a potential tradeoff between ectomycorrhizal fungal competitive ability and enzymatic function. Methods. We grew Pinus muricata (Bishop Pine) seedlings in association with ectomycorrhizal fungi from three different genera in a fully factorial experimental design. We measured seedling growth responses, ectomycorrhizal abundance, and the root tip activity of five different extracellular enzymes involved in the mobilization of carbon and phosphorus. Results. We found an inverse relationship between competitiveness, quantified based on relative colonization levels, and enzymatic activity. Specifically, Thelephora terrestris, the dominant fungus, had the lowest enzyme activity levels, while Suillus pungens, the least dominant fungus, had the highest. Discussion. Our results identify a tradeoff between competition and function in ectomycorrhizal fungi, perhaps mediated by the competing energetic demands associated with competitive interactions and enzymatic production. These data suggest that mechanisms such as active partner maintenance by host trees may be important to maintaining "high-quality" ectomycorrhizal fungal partners in natural systems.

Published
2016

19. Competition-function tradeoffs in ectomycorrhizal fungi

Author

Moeller, Holly, Peay, Kabir, Moeller, Holly, and Peay, Kabir

Abstract

© The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PeerJ 4 (2016): e2270, doi:10.7717/peerj.2270., The extent to which ectomycorrhizal fungi mediate primary production, carbon storage, and nutrient remineralization in terrestrial ecosystems depends upon fungal community composition. However, the factors that govern community composition at the root system scale are not well understood. Here, we explore a potential tradeoff between ectomycorrhizal fungal competitive ability and enzymatic function. We grew Pinus muricata (Bishop Pine) seedlings in association with ectomycorrhizal fungi from three different genera in a fully factorial experimental design. We measured seedling growth responses, ectomycorrhizal abundance, and the root tip activity of five different extracellular enzymes involved in the mobilization of carbon and phosphorus. We found an inverse relationship between competitiveness, quantified based on relative colonization levels, and enzymatic activity. Specifically, Thelephora terrestris, the dominant fungus, had the lowest enzyme activity levels, while Suillus pungens, the least dominant fungus, had the highest. Our results identify a tradeoff between competition and function in ectomycorrhizal fungi, perhaps mediated by the competing energetic demands associated with competitive interactions and enzymatic production. These data suggest that mechanisms such as active partner maintenance by host trees may be important to maintaining “high-quality” ectomycorrhizal fungal partners in natural systems., HVM received funding from the United States National Science Foundation through a Graduate Research Fellowship, a Doctoral Dissertation Improvement Grant, and a Postdoctoral Research Fellowship in Biology (DBI-1401332). KGP received funding from the National Science Foundation Dimensions of Biodiversity Program (DBI-1045658).

Published
2016

20. Competition-function tradeoffs in ectomycorrhizal fungi

Author

Moeller, Holly, Peay, Kabir, Moeller, Holly, and Peay, Kabir

Abstract

© The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PeerJ 4 (2016): e2270, doi:10.7717/peerj.2270., The extent to which ectomycorrhizal fungi mediate primary production, carbon storage, and nutrient remineralization in terrestrial ecosystems depends upon fungal community composition. However, the factors that govern community composition at the root system scale are not well understood. Here, we explore a potential tradeoff between ectomycorrhizal fungal competitive ability and enzymatic function. We grew Pinus muricata (Bishop Pine) seedlings in association with ectomycorrhizal fungi from three different genera in a fully factorial experimental design. We measured seedling growth responses, ectomycorrhizal abundance, and the root tip activity of five different extracellular enzymes involved in the mobilization of carbon and phosphorus. We found an inverse relationship between competitiveness, quantified based on relative colonization levels, and enzymatic activity. Specifically, Thelephora terrestris, the dominant fungus, had the lowest enzyme activity levels, while Suillus pungens, the least dominant fungus, had the highest. Our results identify a tradeoff between competition and function in ectomycorrhizal fungi, perhaps mediated by the competing energetic demands associated with competitive interactions and enzymatic production. These data suggest that mechanisms such as active partner maintenance by host trees may be important to maintaining “high-quality” ectomycorrhizal fungal partners in natural systems., HVM received funding from the United States National Science Foundation through a Graduate Research Fellowship, a Doctoral Dissertation Improvement Grant, and a Postdoctoral Research Fellowship in Biology (DBI-1401332). KGP received funding from the National Science Foundation Dimensions of Biodiversity Program (DBI-1045658).

Published
2016

21. Competition-function tradeoffs in ectomycorrhizal fungi.

Author

Moeller, Holly V, Moeller, Holly V, Peay, Kabir G, Moeller, Holly V, Moeller, Holly V, and Peay, Kabir G

Abstract

Background. The extent to which ectomycorrhizal fungi mediate primary production, carbon storage, and nutrient remineralization in terrestrial ecosystems depends upon fungal community composition. However, the factors that govern community composition at the root system scale are not well understood. Here, we explore a potential tradeoff between ectomycorrhizal fungal competitive ability and enzymatic function. Methods. We grew Pinus muricata (Bishop Pine) seedlings in association with ectomycorrhizal fungi from three different genera in a fully factorial experimental design. We measured seedling growth responses, ectomycorrhizal abundance, and the root tip activity of five different extracellular enzymes involved in the mobilization of carbon and phosphorus. Results. We found an inverse relationship between competitiveness, quantified based on relative colonization levels, and enzymatic activity. Specifically, Thelephora terrestris, the dominant fungus, had the lowest enzyme activity levels, while Suillus pungens, the least dominant fungus, had the highest. Discussion. Our results identify a tradeoff between competition and function in ectomycorrhizal fungi, perhaps mediated by the competing energetic demands associated with competitive interactions and enzymatic production. These data suggest that mechanisms such as active partner maintenance by host trees may be important to maintaining "high-quality" ectomycorrhizal fungal partners in natural systems.

Published
2016

22. A continental view of pine-associated ectomycorrhizal fungal spore banks: a quiescent functional guild with a strong biogeographic pattern.

Author

Glassman, Sydney I, Glassman, Sydney I, Peay, Kabir G, Talbot, Jennifer M, Smith, Dylan P, Chung, Judy A, Taylor, John W, Vilgalys, Rytas, Bruns, Thomas D, Glassman, Sydney I, Glassman, Sydney I, Peay, Kabir G, Talbot, Jennifer M, Smith, Dylan P, Chung, Judy A, Taylor, John W, Vilgalys, Rytas, and Bruns, Thomas D

Abstract

Ecologists have long acknowledged the importance of seed banks; yet, despite the fact that many plants rely on mycorrhizal fungi for survival and growth, the structure of ectomycorrhizal (ECM) fungal spore banks remains poorly understood. The primary goal of this study was to assess the geographic structure in pine-associated ECM fungal spore banks across the North American continent. Soils were collected from 19 plots in forests across North America. Fresh soils were pyrosequenced for fungal internal transcribed spacer (ITS) amplicons. Adjacent soil cores were dried and bioassayed with pine seedlings, and colonized roots were pyrosequenced to detect resistant propagules of ECM fungi. The results showed that ECM spore banks correlated strongly with biogeographic location, but not with the identity of congeneric plant hosts. Minimal community overlap was found between resident ECM fungi vs those in spore banks, and spore bank assemblages were relatively simple and dominated by Rhizopogon, Wilcoxina, Cenococcum, Thelephora, Tuber, Laccaria and Suillus. Similar to plant seed banks, ECM fungal spore banks are, in general, depauperate, and represent a small and rare subset of the mature forest soil fungal community. Yet, they may be extremely important in fungal colonization after large-scale disturbances such as clear cuts and forest fires.

Published
2015

23. A continental view of pine-associated ectomycorrhizal fungal spore banks: a quiescent functional guild with a strong biogeographic pattern.

Author

Glassman, Sydney I, Glassman, Sydney I, Peay, Kabir G, Talbot, Jennifer M, Smith, Dylan P, Chung, Judy A, Taylor, John W, Vilgalys, Rytas, Bruns, Thomas D, Glassman, Sydney I, Glassman, Sydney I, Peay, Kabir G, Talbot, Jennifer M, Smith, Dylan P, Chung, Judy A, Taylor, John W, Vilgalys, Rytas, and Bruns, Thomas D

Abstract

Ecologists have long acknowledged the importance of seed banks; yet, despite the fact that many plants rely on mycorrhizal fungi for survival and growth, the structure of ectomycorrhizal (ECM) fungal spore banks remains poorly understood. The primary goal of this study was to assess the geographic structure in pine-associated ECM fungal spore banks across the North American continent. Soils were collected from 19 plots in forests across North America. Fresh soils were pyrosequenced for fungal internal transcribed spacer (ITS) amplicons. Adjacent soil cores were dried and bioassayed with pine seedlings, and colonized roots were pyrosequenced to detect resistant propagules of ECM fungi. The results showed that ECM spore banks correlated strongly with biogeographic location, but not with the identity of congeneric plant hosts. Minimal community overlap was found between resident ECM fungi vs those in spore banks, and spore bank assemblages were relatively simple and dominated by Rhizopogon, Wilcoxina, Cenococcum, Thelephora, Tuber, Laccaria and Suillus. Similar to plant seed banks, ECM fungal spore banks are, in general, depauperate, and represent a small and rare subset of the mature forest soil fungal community. Yet, they may be extremely important in fungal colonization after large-scale disturbances such as clear cuts and forest fires.

Published
2015

24. Endemism and functional convergence across the North American soil mycobiome.

Author

Talbot, Jennifer M, Talbot, Jennifer M, Bruns, Thomas D, Taylor, John W, Smith, Dylan P, Branco, Sara, Glassman, Sydney I, Erlandson, Sonya, Vilgalys, Rytas, Liao, Hui-Ling, Smith, Matthew E, Peay, Kabir G, Talbot, Jennifer M, Talbot, Jennifer M, Bruns, Thomas D, Taylor, John W, Smith, Dylan P, Branco, Sara, Glassman, Sydney I, Erlandson, Sonya, Vilgalys, Rytas, Liao, Hui-Ling, Smith, Matthew E, and Peay, Kabir G

Abstract

Identifying the ecological processes that structure communities and the consequences for ecosystem function is a central goal of ecology. The recognition that fungi, bacteria, and viruses control key ecosystem functions has made microbial communities a major focus of this field. Because many ecological processes are apparent only at particular spatial or temporal scales, a complete understanding of the linkages between microbial community, environment, and function requires analysis across a wide range of scales. Here, we map the biological and functional geography of soil fungi from local to continental scales and show that the principal ecological processes controlling community structure and function operate at different scales. Similar to plants or animals, most soil fungi are endemic to particular bioregions, suggesting that factors operating at large spatial scales, like dispersal limitation or climate, are the first-order determinants of fungal community structure in nature. By contrast, soil extracellular enzyme activity is highly convergent across bioregions and widely differing fungal communities. Instead, soil enzyme activity is correlated with local soil environment and distribution of fungal traits within the community. The lack of structure-function relationships for soil fungal communities at continental scales indicates a high degree of functional redundancy among fungal communities in global biogeochemical cycles.

Published
2014

25. Endemism and functional convergence across the North American soil mycobiome.

Author

Talbot, Jennifer M, Talbot, Jennifer M, Bruns, Thomas D, Taylor, John W, Smith, Dylan P, Branco, Sara, Glassman, Sydney I, Erlandson, Sonya, Vilgalys, Rytas, Liao, Hui-Ling, Smith, Matthew E, Peay, Kabir G, Talbot, Jennifer M, Talbot, Jennifer M, Bruns, Thomas D, Taylor, John W, Smith, Dylan P, Branco, Sara, Glassman, Sydney I, Erlandson, Sonya, Vilgalys, Rytas, Liao, Hui-Ling, Smith, Matthew E, and Peay, Kabir G

Abstract

Identifying the ecological processes that structure communities and the consequences for ecosystem function is a central goal of ecology. The recognition that fungi, bacteria, and viruses control key ecosystem functions has made microbial communities a major focus of this field. Because many ecological processes are apparent only at particular spatial or temporal scales, a complete understanding of the linkages between microbial community, environment, and function requires analysis across a wide range of scales. Here, we map the biological and functional geography of soil fungi from local to continental scales and show that the principal ecological processes controlling community structure and function operate at different scales. Similar to plants or animals, most soil fungi are endemic to particular bioregions, suggesting that factors operating at large spatial scales, like dispersal limitation or climate, are the first-order determinants of fungal community structure in nature. By contrast, soil extracellular enzyme activity is highly convergent across bioregions and widely differing fungal communities. Instead, soil enzyme activity is correlated with local soil environment and distribution of fungal traits within the community. The lack of structure-function relationships for soil fungal communities at continental scales indicates a high degree of functional redundancy among fungal communities in global biogeochemical cycles.

Published
2014

26. Towards global patterns in the diversity and community structure of ectomycorrhizal fungi.

Author

Tedersoo, Leho, Bahram, Mohammad, Toots, Märt, Diédhiou, Abdala G, Henkel, Terry W, Kjøller, Rasmus, Morris, Melissa H, Nara, Kazuhide, Nouhra, Eduardo, Peay, Kabir G, Põlme, Sergei, Ryberg, Martin, Smith, Matthew E, Kõljalg, Urmas, Tedersoo, Leho, Bahram, Mohammad, Toots, Märt, Diédhiou, Abdala G, Henkel, Terry W, Kjøller, Rasmus, Morris, Melissa H, Nara, Kazuhide, Nouhra, Eduardo, Peay, Kabir G, Põlme, Sergei, Ryberg, Martin, Smith, Matthew E, and Kõljalg, Urmas

Abstract

Global species richness patterns of soil micro-organisms remain poorly understood compared to macro-organisms. We use a global analysis to disentangle the global determinants of diversity and community composition for ectomycorrhizal (EcM) fungi-microbial symbionts that play key roles in plant nutrition in most temperate and many tropical forest ecosystems. Host plant family has the strongest effect on the phylogenetic community composition of fungi, whereas temperature and precipitation mostly affect EcM fungal richness that peaks in the temperate and boreal forest biomes, contrasting with latitudinal patterns of macro-organisms. Tropical ecosystems experience rapid turnover of organic material and have weak soil stratification, suggesting that poor habitat conditions may contribute to the relatively low richness of EcM fungi, and perhaps other soil biota, in most tropical ecosystems. For EcM fungi, greater evolutionary age and larger total area of EcM host vegetation may also contribute to the higher diversity in temperate ecosystems. Our results provide useful biogeographic and ecological hypotheses for explaining the distribution of fungi that remain to be tested by involving next-generation sequencing techniques and relevant soil metadata.

Published
2012
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27. Towards global patterns in the diversity and community structure of ectomycorrhizal fungi

Author

Tedersoo, Leho, Bahram, Mohammad, Toots, Märt, Dédhiou, Abdala G., Henkel, Terry W., Kjøller, Rasmus, Morris, Melissa H., Nara, Kazuhide, Nouhra, Eduardo, Peay, Kabir G., Põlme, Sergei, Ryberg, Martin, SMITH, MATTHEW E., Kõljalg, Urmas, Tedersoo, Leho, Bahram, Mohammad, Toots, Märt, Dédhiou, Abdala G., Henkel, Terry W., Kjøller, Rasmus, Morris, Melissa H., Nara, Kazuhide, Nouhra, Eduardo, Peay, Kabir G., Põlme, Sergei, Ryberg, Martin, SMITH, MATTHEW E., and Kõljalg, Urmas

Abstract

Global species richness patterns of soil micro-organisms remain poorly understood compared to macro-organisms. We use a global analysis to disentangle the global determinants of diversity and community composition for ectomycorrhizal (EcM) fungi—microbial symbionts that play key roles in plant nutrition in most temperate and many tropical forest ecosystems. Host plant family has the strongest effect on the phylogenetic community composition of fungi, whereas temperature and precipitation mostly affect EcM fungal richness that peaks in the temperate and boreal forest biomes, contrasting with latitudinal patterns of macro-organisms. Tropical ecosystems experience rapid turnover of organic material and have weak soil stratification, suggesting that poor habitat conditions may contribute to the relatively low richness of EcM fungi, and perhaps other soil biota, in most tropical ecosystems. For EcM fungi, greater evolutionary age and larger total area of EcM host vegetation may also contribute to the higher diversity in temperate ecosystems. Our results provide useful biogeographic and ecological hypotheses for explaining the distribution of fungi that remain to be tested by involving next-generation sequencing techniques and relevant soil metadata.

Published
2012

28. Towards global patterns in the diversity and community structure of ectomycorrhizal fungi

Author

Tedersoo, Leho, Bahram, Mohammad, Toots, Märt, Dédhiou, Abdala G., Henkel, Terry W., Kjøller, Rasmus, Morris, Melissa H., Nara, Kazuhide, Nouhra, Eduardo, Peay, Kabir G., Põlme, Sergei, Ryberg, Martin, SMITH, MATTHEW E., Kõljalg, Urmas, Tedersoo, Leho, Bahram, Mohammad, Toots, Märt, Dédhiou, Abdala G., Henkel, Terry W., Kjøller, Rasmus, Morris, Melissa H., Nara, Kazuhide, Nouhra, Eduardo, Peay, Kabir G., Põlme, Sergei, Ryberg, Martin, SMITH, MATTHEW E., and Kõljalg, Urmas

Abstract

Global species richness patterns of soil micro-organisms remain poorly understood compared to macro-organisms. We use a global analysis to disentangle the global determinants of diversity and community composition for ectomycorrhizal (EcM) fungi—microbial symbionts that play key roles in plant nutrition in most temperate and many tropical forest ecosystems. Host plant family has the strongest effect on the phylogenetic community composition of fungi, whereas temperature and precipitation mostly affect EcM fungal richness that peaks in the temperate and boreal forest biomes, contrasting with latitudinal patterns of macro-organisms. Tropical ecosystems experience rapid turnover of organic material and have weak soil stratification, suggesting that poor habitat conditions may contribute to the relatively low richness of EcM fungi, and perhaps other soil biota, in most tropical ecosystems. For EcM fungi, greater evolutionary age and larger total area of EcM host vegetation may also contribute to the higher diversity in temperate ecosystems. Our results provide useful biogeographic and ecological hypotheses for explaining the distribution of fungi that remain to be tested by involving next-generation sequencing techniques and relevant soil metadata.

Published
2012

29. Preserving Accuracy in GenBank

Author

Bruns, Thomas D., Blackwell, Meredith, Edwards, Ivan, Taylor, Andy F. S., Horton, Thomas, Zhang, Ning, Kõljalg, Urmas, May, Georgiana, Kuyper, Thomas W., Bever, James D., Gilbert, Gregory, Taylor, John W., DeSantis, Todd Z., Pringle, Anne, Borneman, James, Thorn, Greg, Berbee, Mary, Mueller, Gregory M., Andersen, Gary L., Vellinga, Else C., Branco, Sara, Anderson, Ian, Dickie, Ian A., Avis, Peter, Timonen, Sari, Kjøller, Rasmus, Lodge, D. J., Bateman, Richard M., Purvis, Andy, Crous, Pedro W., Hawkes, Christine, Barraclough, Tim, Burt, Austin, Nilsson, R. H., Larsson, Karl-Henrik, Alexander, Ian, Moncalvo, Jean-Marc, Berube, Jean, Spatafora, Joseph, Thorsten Lumbsch, H., Blair, Jaime E., Suh, Sung-Oui, Pfister, Donald H., Binder, Manfred, Boehm, Eric W., Kohn, Linda, Mata, Juan L., Dyer, Paul, Sung, Gi-Ho, Dentinger, Bryn, Simmons, Emory G., Baird, Richard E., Volk, Thomas J., Perry, Brian A., Kerrigan, Richard W., Campbell, Jinx, Rajesh, Jeewon, Reynolds, Don R., Geiser, David, Humber, Richard A., Hausmann, Natasha, Szaro, Tim, Stajich, Jason, Gathman, Allen, Peay, Kabir G., Henkel, Terry, Robinson, Clare H., Pukkila, Patricia J., Nguyen, Nhu H., Villalta, Christopher, Kennedy, Peter, Bergemann, Sarah, Catherine Aime, M., Kauff, Frank, Porras-Alfaro, Andrea, Gueidan, Cecile, Beck, Andreas, Andersen, Birgitte, Marek, Stephen, Crouch, Jo A., Kerrigan, Julia, Beagle Ristaino, Jean, Hodge, Kathie T., Kuldau, Gretchen, Samuels, Gary J., Raja, Huzefa A., Voglmayr, Hermann, Gardes, Monique, Janos, David P., Rogers, Jack D., Cannon, Paul, Woolfolk, Sandra W., Kistler, H. C., Castellano, Michael A., Maldonado-Ramírez, Sandra L., Kirk, Paul M., Farrar, James J., Osmundson, Todd, Currah, Randolph S., Vujanovic, Vladimir, Chen, Weidong, Korf, Richard P., Atallah, Zahi K., Harrison, Ken J., Guarro, Josep, Bates, Scott T., Enrico Bonello, Pierluigi, Bridge, Paul, Schell, Wiley, Rossi, Walter, Stenlid, Jan, Frisvad, Jens C., Miller, R. M., Baker, Scott E., Hallen, Heather E., Janso, Jeffrey E., Wilson, Andrew W., Conway, Kenneth E., Egerton-Warburton, Louise, Wang, Zheng, Eastburn, Darin, Ho, Wellcome W. Hong, Kroken, Scott, Stadler, Marc, Turgeon, Gillian, Lichtwardt, Robert W., Stewart, Elwin L., Wedin, Mats, Li, De-Wei, Uchida, Janice Y., Jumpponen, Ari, Deckert, Ron J., Beker, Henry J., Rogers, Scott O., Xu, Jianping, Johnston, Peter, Shoemaker, R. A., Liu, Miao, Marques, G., Summerell, Brett, Sokolski, Serge, Thrane, Ulf, Widden, Paul, Bruhn, Johann N., Bianchinotti, Virginia, Tuthill, Dorothy, Baroni, Timothy J., Barron, George, Hosaka, Kentaro, Jewell, Kelsea, Piepenbring, Meike, Sullivan, Raymond, Griffith, Gareth W., Bradley, S. G., Aoki, Takayuki, Yoder, Wendy T., Ju, Yu-Ming, Berch, Shannon M., Trappe, Matt, Duan, Weijun, Bonito, Gregory, Taber, Ruth A., Coelho, Gilberto, Bills, Gerald, Ganley, Austen, Agerer, Reinhard, Nagy, László, Roy, Barbara A., Læssøe, Thomas, Hallenberg, Nils, Tichy, Hans-Volker, Stalpers, Joost, Langer, Ewald, Scholler, Markus, Krueger, Dirk, Pacioni, Giovanni, Pöder, Reinhold, Pennanen, Taina, Capelari, Marina, Nakasone, Karen, Tewari, J. P., Miller, Andrew N., Decock, Cony, Huhndorf, Sabine, Wach, Mark, Vishniac, Helen S., Yohalem, David S., Smith, Matthew E., Glenn, Anthony E., Spiering, Martin, Lindner, Daniel L., Schoch, Conrad, Redhead, Scott A., Ivors, Kelly, Jeffers, Steven N., Geml, József, Okafor, Florence, Spiegel, Frederick W., Dewsbury, Damon, Carroll, Juliet, Porter, Terri M., Pashley, Catherine, Carpenter, Steven E., Abad, Gloria, Voigt, Kerstin, Arenz, Brett, Methven, Andrew S., Schechter, Shannon, Vance, Paula, Mahoney, Dan, Kang, Seogchan, Rheeder, John P., Mehl, James, Greif, Matthew, Ndzi Ngala, George, Ammirati, Joe, Kawasaki, Masako, Gwo-Fang, Yuan, Matsumoto, Tadahiko, Smith, David, Koenig, Gina, Luoma, Daniel, May, Tom, Leonardi, Marco, Sigler, Lynne, Taylor, D. L., Gibson, Cara, Sharpton, Thomas, Hawksworth, David L., Carmine Dianese, Jose, Trudell, Steven A., Paulus, Barbara, Padamsee, Mahajabeen, Callac, Philippe, Lima, Nelson, White, Merlin, Barreau, C., Juncai, M. A., Buyck, Bart, Rabeler, Richard K., Liles, Mark R., Estes, Dwayne, Carter, Richard, Herr, J. M., Chandler, Gregory, Kerekes, Jennifer, Cruse-Sanders, Jennifer, Galán Márquez, R., Horak, Egon, Fitzsimons, Michael, Döring, Heidi, Yao, Su, Hynson, Nicole, Ryberg, Martin, Arnold, A. E., Hughes, Karen, Bruns, Thomas D., Blackwell, Meredith, Edwards, Ivan, Taylor, Andy F. S., Horton, Thomas, Zhang, Ning, Kõljalg, Urmas, May, Georgiana, Kuyper, Thomas W., Bever, James D., Gilbert, Gregory, Taylor, John W., DeSantis, Todd Z., Pringle, Anne, Borneman, James, Thorn, Greg, Berbee, Mary, Mueller, Gregory M., Andersen, Gary L., Vellinga, Else C., Branco, Sara, Anderson, Ian, Dickie, Ian A., Avis, Peter, Timonen, Sari, Kjøller, Rasmus, Lodge, D. J., Bateman, Richard M., Purvis, Andy, Crous, Pedro W., Hawkes, Christine, Barraclough, Tim, Burt, Austin, Nilsson, R. H., Larsson, Karl-Henrik, Alexander, Ian, Moncalvo, Jean-Marc, Berube, Jean, Spatafora, Joseph, Thorsten Lumbsch, H., Blair, Jaime E., Suh, Sung-Oui, Pfister, Donald H., Binder, Manfred, Boehm, Eric W., Kohn, Linda, Mata, Juan L., Dyer, Paul, Sung, Gi-Ho, Dentinger, Bryn, Simmons, Emory G., Baird, Richard E., Volk, Thomas J., Perry, Brian A., Kerrigan, Richard W., Campbell, Jinx, Rajesh, Jeewon, Reynolds, Don R., Geiser, David, Humber, Richard A., Hausmann, Natasha, Szaro, Tim, Stajich, Jason, Gathman, Allen, Peay, Kabir G., Henkel, Terry, Robinson, Clare H., Pukkila, Patricia J., Nguyen, Nhu H., Villalta, Christopher, Kennedy, Peter, Bergemann, Sarah, Catherine Aime, M., Kauff, Frank, Porras-Alfaro, Andrea, Gueidan, Cecile, Beck, Andreas, Andersen, Birgitte, Marek, Stephen, Crouch, Jo A., Kerrigan, Julia, Beagle Ristaino, Jean, Hodge, Kathie T., Kuldau, Gretchen, Samuels, Gary J., Raja, Huzefa A., Voglmayr, Hermann, Gardes, Monique, Janos, David P., Rogers, Jack D., Cannon, Paul, Woolfolk, Sandra W., Kistler, H. C., Castellano, Michael A., Maldonado-Ramírez, Sandra L., Kirk, Paul M., Farrar, James J., Osmundson, Todd, Currah, Randolph S., Vujanovic, Vladimir, Chen, Weidong, Korf, Richard P., Atallah, Zahi K., Harrison, Ken J., Guarro, Josep, Bates, Scott T., Enrico Bonello, Pierluigi, Bridge, Paul, Schell, Wiley, Rossi, Walter, Stenlid, Jan, Frisvad, Jens C., Miller, R. M., Baker, Scott E., Hallen, Heather E., Janso, Jeffrey E., Wilson, Andrew W., Conway, Kenneth E., Egerton-Warburton, Louise, Wang, Zheng, Eastburn, Darin, Ho, Wellcome W. Hong, Kroken, Scott, Stadler, Marc, Turgeon, Gillian, Lichtwardt, Robert W., Stewart, Elwin L., Wedin, Mats, Li, De-Wei, Uchida, Janice Y., Jumpponen, Ari, Deckert, Ron J., Beker, Henry J., Rogers, Scott O., Xu, Jianping, Johnston, Peter, Shoemaker, R. A., Liu, Miao, Marques, G., Summerell, Brett, Sokolski, Serge, Thrane, Ulf, Widden, Paul, Bruhn, Johann N., Bianchinotti, Virginia, Tuthill, Dorothy, Baroni, Timothy J., Barron, George, Hosaka, Kentaro, Jewell, Kelsea, Piepenbring, Meike, Sullivan, Raymond, Griffith, Gareth W., Bradley, S. G., Aoki, Takayuki, Yoder, Wendy T., Ju, Yu-Ming, Berch, Shannon M., Trappe, Matt, Duan, Weijun, Bonito, Gregory, Taber, Ruth A., Coelho, Gilberto, Bills, Gerald, Ganley, Austen, Agerer, Reinhard, Nagy, László, Roy, Barbara A., Læssøe, Thomas, Hallenberg, Nils, Tichy, Hans-Volker, Stalpers, Joost, Langer, Ewald, Scholler, Markus, Krueger, Dirk, Pacioni, Giovanni, Pöder, Reinhold, Pennanen, Taina, Capelari, Marina, Nakasone, Karen, Tewari, J. P., Miller, Andrew N., Decock, Cony, Huhndorf, Sabine, Wach, Mark, Vishniac, Helen S., Yohalem, David S., Smith, Matthew E., Glenn, Anthony E., Spiering, Martin, Lindner, Daniel L., Schoch, Conrad, Redhead, Scott A., Ivors, Kelly, Jeffers, Steven N., Geml, József, Okafor, Florence, Spiegel, Frederick W., Dewsbury, Damon, Carroll, Juliet, Porter, Terri M., Pashley, Catherine, Carpenter, Steven E., Abad, Gloria, Voigt, Kerstin, Arenz, Brett, Methven, Andrew S., Schechter, Shannon, Vance, Paula, Mahoney, Dan, Kang, Seogchan, Rheeder, John P., Mehl, James, Greif, Matthew, Ndzi Ngala, George, Ammirati, Joe, Kawasaki, Masako, Gwo-Fang, Yuan, Matsumoto, Tadahiko, Smith, David, Koenig, Gina, Luoma, Daniel, May, Tom, Leonardi, Marco, Sigler, Lynne, Taylor, D. L., Gibson, Cara, Sharpton, Thomas, Hawksworth, David L., Carmine Dianese, Jose, Trudell, Steven A., Paulus, Barbara, Padamsee, Mahajabeen, Callac, Philippe, Lima, Nelson, White, Merlin, Barreau, C., Juncai, M. A., Buyck, Bart, Rabeler, Richard K., Liles, Mark R., Estes, Dwayne, Carter, Richard, Herr, J. M., Chandler, Gregory, Kerekes, Jennifer, Cruse-Sanders, Jennifer, Galán Márquez, R., Horak, Egon, Fitzsimons, Michael, Döring, Heidi, Yao, Su, Hynson, Nicole, Ryberg, Martin, Arnold, A. E., and Hughes, Karen

Published
2008

30. Preserving Accuracy in GenBank

Author

Bruns, Thomas D., Blackwell, Meredith, Edwards, Ivan, Taylor, Andy F. S., Horton, Thomas, Zhang, Ning, Kõljalg, Urmas, May, Georgiana, Kuyper, Thomas W., Bever, James D., Gilbert, Gregory, Taylor, John W., DeSantis, Todd Z., Pringle, Anne, Borneman, James, Thorn, Greg, Berbee, Mary, Mueller, Gregory M., Andersen, Gary L., Vellinga, Else C., Branco, Sara, Anderson, Ian, Dickie, Ian A., Avis, Peter, Timonen, Sari, Kjøller, Rasmus, Lodge, D. J., Bateman, Richard M., Purvis, Andy, Crous, Pedro W., Hawkes, Christine, Barraclough, Tim, Burt, Austin, Nilsson, R. H., Larsson, Karl-Henrik, Alexander, Ian, Moncalvo, Jean-Marc, Berube, Jean, Spatafora, Joseph, Thorsten Lumbsch, H., Blair, Jaime E., Suh, Sung-Oui, Pfister, Donald H., Binder, Manfred, Boehm, Eric W., Kohn, Linda, Mata, Juan L., Dyer, Paul, Sung, Gi-Ho, Dentinger, Bryn, Simmons, Emory G., Baird, Richard E., Volk, Thomas J., Perry, Brian A., Kerrigan, Richard W., Campbell, Jinx, Rajesh, Jeewon, Reynolds, Don R., Geiser, David, Humber, Richard A., Hausmann, Natasha, Szaro, Tim, Stajich, Jason, Gathman, Allen, Peay, Kabir G., Henkel, Terry, Robinson, Clare H., Pukkila, Patricia J., Nguyen, Nhu H., Villalta, Christopher, Kennedy, Peter, Bergemann, Sarah, Catherine Aime, M., Kauff, Frank, Porras-Alfaro, Andrea, Gueidan, Cecile, Beck, Andreas, Andersen, Birgitte, Marek, Stephen, Crouch, Jo A., Kerrigan, Julia, Beagle Ristaino, Jean, Hodge, Kathie T., Kuldau, Gretchen, Samuels, Gary J., Raja, Huzefa A., Voglmayr, Hermann, Gardes, Monique, Janos, David P., Rogers, Jack D., Cannon, Paul, Woolfolk, Sandra W., Kistler, H. C., Castellano, Michael A., Maldonado-Ramírez, Sandra L., Kirk, Paul M., Farrar, James J., Osmundson, Todd, Currah, Randolph S., Vujanovic, Vladimir, Chen, Weidong, Korf, Richard P., Atallah, Zahi K., Harrison, Ken J., Guarro, Josep, Bates, Scott T., Enrico Bonello, Pierluigi, Bridge, Paul, Schell, Wiley, Rossi, Walter, Stenlid, Jan, Frisvad, Jens C., Miller, R. M., Baker, Scott E., Hallen, Heather E., Janso, Jeffrey E., Wilson, Andrew W., Conway, Kenneth E., Egerton-Warburton, Louise, Wang, Zheng, Eastburn, Darin, Ho, Wellcome W. Hong, Kroken, Scott, Stadler, Marc, Turgeon, Gillian, Lichtwardt, Robert W., Stewart, Elwin L., Wedin, Mats, Li, De-Wei, Uchida, Janice Y., Jumpponen, Ari, Deckert, Ron J., Beker, Henry J., Rogers, Scott O., Xu, Jianping, Johnston, Peter, Shoemaker, R. A., Liu, Miao, Marques, G., Summerell, Brett, Sokolski, Serge, Thrane, Ulf, Widden, Paul, Bruhn, Johann N., Bianchinotti, Virginia, Tuthill, Dorothy, Baroni, Timothy J., Barron, George, Hosaka, Kentaro, Jewell, Kelsea, Piepenbring, Meike, Sullivan, Raymond, Griffith, Gareth W., Bradley, S. G., Aoki, Takayuki, Yoder, Wendy T., Ju, Yu-Ming, Berch, Shannon M., Trappe, Matt, Duan, Weijun, Bonito, Gregory, Taber, Ruth A., Coelho, Gilberto, Bills, Gerald, Ganley, Austen, Agerer, Reinhard, Nagy, László, Roy, Barbara A., Læssøe, Thomas, Hallenberg, Nils, Tichy, Hans-Volker, Stalpers, Joost, Langer, Ewald, Scholler, Markus, Krueger, Dirk, Pacioni, Giovanni, Pöder, Reinhold, Pennanen, Taina, Capelari, Marina, Nakasone, Karen, Tewari, J. P., Miller, Andrew N., Decock, Cony, Huhndorf, Sabine, Wach, Mark, Vishniac, Helen S., Yohalem, David S., Smith, Matthew E., Glenn, Anthony E., Spiering, Martin, Lindner, Daniel L., Schoch, Conrad, Redhead, Scott A., Ivors, Kelly, Jeffers, Steven N., Geml, József, Okafor, Florence, Spiegel, Frederick W., Dewsbury, Damon, Carroll, Juliet, Porter, Terri M., Pashley, Catherine, Carpenter, Steven E., Abad, Gloria, Voigt, Kerstin, Arenz, Brett, Methven, Andrew S., Schechter, Shannon, Vance, Paula, Mahoney, Dan, Kang, Seogchan, Rheeder, John P., Mehl, James, Greif, Matthew, Ndzi Ngala, George, Ammirati, Joe, Kawasaki, Masako, Gwo-Fang, Yuan, Matsumoto, Tadahiko, Smith, David, Koenig, Gina, Luoma, Daniel, May, Tom, Leonardi, Marco, Sigler, Lynne, Taylor, D. L., Gibson, Cara, Sharpton, Thomas, Hawksworth, David L., Carmine Dianese, Jose, Trudell, Steven A., Paulus, Barbara, Padamsee, Mahajabeen, Callac, Philippe, Lima, Nelson, White, Merlin, Barreau, C., Juncai, M. A., Buyck, Bart, Rabeler, Richard K., Liles, Mark R., Estes, Dwayne, Carter, Richard, Herr, J. M., Chandler, Gregory, Kerekes, Jennifer, Cruse-Sanders, Jennifer, Galán Márquez, R., Horak, Egon, Fitzsimons, Michael, Döring, Heidi, Yao, Su, Hynson, Nicole, Ryberg, Martin, Arnold, A. E., Hughes, Karen, Bruns, Thomas D., Blackwell, Meredith, Edwards, Ivan, Taylor, Andy F. S., Horton, Thomas, Zhang, Ning, Kõljalg, Urmas, May, Georgiana, Kuyper, Thomas W., Bever, James D., Gilbert, Gregory, Taylor, John W., DeSantis, Todd Z., Pringle, Anne, Borneman, James, Thorn, Greg, Berbee, Mary, Mueller, Gregory M., Andersen, Gary L., Vellinga, Else C., Branco, Sara, Anderson, Ian, Dickie, Ian A., Avis, Peter, Timonen, Sari, Kjøller, Rasmus, Lodge, D. J., Bateman, Richard M., Purvis, Andy, Crous, Pedro W., Hawkes, Christine, Barraclough, Tim, Burt, Austin, Nilsson, R. H., Larsson, Karl-Henrik, Alexander, Ian, Moncalvo, Jean-Marc, Berube, Jean, Spatafora, Joseph, Thorsten Lumbsch, H., Blair, Jaime E., Suh, Sung-Oui, Pfister, Donald H., Binder, Manfred, Boehm, Eric W., Kohn, Linda, Mata, Juan L., Dyer, Paul, Sung, Gi-Ho, Dentinger, Bryn, Simmons, Emory G., Baird, Richard E., Volk, Thomas J., Perry, Brian A., Kerrigan, Richard W., Campbell, Jinx, Rajesh, Jeewon, Reynolds, Don R., Geiser, David, Humber, Richard A., Hausmann, Natasha, Szaro, Tim, Stajich, Jason, Gathman, Allen, Peay, Kabir G., Henkel, Terry, Robinson, Clare H., Pukkila, Patricia J., Nguyen, Nhu H., Villalta, Christopher, Kennedy, Peter, Bergemann, Sarah, Catherine Aime, M., Kauff, Frank, Porras-Alfaro, Andrea, Gueidan, Cecile, Beck, Andreas, Andersen, Birgitte, Marek, Stephen, Crouch, Jo A., Kerrigan, Julia, Beagle Ristaino, Jean, Hodge, Kathie T., Kuldau, Gretchen, Samuels, Gary J., Raja, Huzefa A., Voglmayr, Hermann, Gardes, Monique, Janos, David P., Rogers, Jack D., Cannon, Paul, Woolfolk, Sandra W., Kistler, H. C., Castellano, Michael A., Maldonado-Ramírez, Sandra L., Kirk, Paul M., Farrar, James J., Osmundson, Todd, Currah, Randolph S., Vujanovic, Vladimir, Chen, Weidong, Korf, Richard P., Atallah, Zahi K., Harrison, Ken J., Guarro, Josep, Bates, Scott T., Enrico Bonello, Pierluigi, Bridge, Paul, Schell, Wiley, Rossi, Walter, Stenlid, Jan, Frisvad, Jens C., Miller, R. M., Baker, Scott E., Hallen, Heather E., Janso, Jeffrey E., Wilson, Andrew W., Conway, Kenneth E., Egerton-Warburton, Louise, Wang, Zheng, Eastburn, Darin, Ho, Wellcome W. Hong, Kroken, Scott, Stadler, Marc, Turgeon, Gillian, Lichtwardt, Robert W., Stewart, Elwin L., Wedin, Mats, Li, De-Wei, Uchida, Janice Y., Jumpponen, Ari, Deckert, Ron J., Beker, Henry J., Rogers, Scott O., Xu, Jianping, Johnston, Peter, Shoemaker, R. A., Liu, Miao, Marques, G., Summerell, Brett, Sokolski, Serge, Thrane, Ulf, Widden, Paul, Bruhn, Johann N., Bianchinotti, Virginia, Tuthill, Dorothy, Baroni, Timothy J., Barron, George, Hosaka, Kentaro, Jewell, Kelsea, Piepenbring, Meike, Sullivan, Raymond, Griffith, Gareth W., Bradley, S. G., Aoki, Takayuki, Yoder, Wendy T., Ju, Yu-Ming, Berch, Shannon M., Trappe, Matt, Duan, Weijun, Bonito, Gregory, Taber, Ruth A., Coelho, Gilberto, Bills, Gerald, Ganley, Austen, Agerer, Reinhard, Nagy, László, Roy, Barbara A., Læssøe, Thomas, Hallenberg, Nils, Tichy, Hans-Volker, Stalpers, Joost, Langer, Ewald, Scholler, Markus, Krueger, Dirk, Pacioni, Giovanni, Pöder, Reinhold, Pennanen, Taina, Capelari, Marina, Nakasone, Karen, Tewari, J. P., Miller, Andrew N., Decock, Cony, Huhndorf, Sabine, Wach, Mark, Vishniac, Helen S., Yohalem, David S., Smith, Matthew E., Glenn, Anthony E., Spiering, Martin, Lindner, Daniel L., Schoch, Conrad, Redhead, Scott A., Ivors, Kelly, Jeffers, Steven N., Geml, József, Okafor, Florence, Spiegel, Frederick W., Dewsbury, Damon, Carroll, Juliet, Porter, Terri M., Pashley, Catherine, Carpenter, Steven E., Abad, Gloria, Voigt, Kerstin, Arenz, Brett, Methven, Andrew S., Schechter, Shannon, Vance, Paula, Mahoney, Dan, Kang, Seogchan, Rheeder, John P., Mehl, James, Greif, Matthew, Ndzi Ngala, George, Ammirati, Joe, Kawasaki, Masako, Gwo-Fang, Yuan, Matsumoto, Tadahiko, Smith, David, Koenig, Gina, Luoma, Daniel, May, Tom, Leonardi, Marco, Sigler, Lynne, Taylor, D. L., Gibson, Cara, Sharpton, Thomas, Hawksworth, David L., Carmine Dianese, Jose, Trudell, Steven A., Paulus, Barbara, Padamsee, Mahajabeen, Callac, Philippe, Lima, Nelson, White, Merlin, Barreau, C., Juncai, M. A., Buyck, Bart, Rabeler, Richard K., Liles, Mark R., Estes, Dwayne, Carter, Richard, Herr, J. M., Chandler, Gregory, Kerekes, Jennifer, Cruse-Sanders, Jennifer, Galán Márquez, R., Horak, Egon, Fitzsimons, Michael, Döring, Heidi, Yao, Su, Hynson, Nicole, Ryberg, Martin, Arnold, A. E., and Hughes, Karen

Published
2008

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