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We present a sample introduction interface that allows direct on-chip processing of crude stool samples for the detection of Helicobacter pylori (H. pylori). Efficient cell lysis and DNA extraction were achieved using stored reagents, reconstituted upon sample addition. Clinical stool samples were analysed using the device and successful amplification of a H. pylori specific target was achieved.

Despite recent advances in microfluidic-based integrated diagnostic systems, the sample introduction interface, especially with regards to large volume samples, has often been neglected. We present a sample introduction interface that allows direct on-chip processing of crude stool samples for the detection of Helicobacter pylori (H. pylori). The principle of IFAST (immiscible filtration assisted by surface tension) was adapted to include a large volume sample chamber with a septum-based interface for stool sample introduction. Solid chaotropic salt and dry superparamagnetic particles (PMPs) could be stored on-chip and reconstituted upon sample addition, simplifying the process of release of DNA from H. pylori cells and its binding to the PMPs. Finally, the PMPs were pulled via a magnet through a washing chamber containing an immiscible oil solution and into an elution chamber where the DNA was released into aqueous media for subsequent analysis. The entire process required only 7 min while enabling a 40-fold reduction in working volume from crude biological samples. The combination of a real-world interface and rapid DNA extraction offers the potential for the methodology to be used in point-of-care (POC) devices.

© The Royal Society of Chemistry 2016. Despite recent advances in microfluidic-based integrated diagnostic systems, the sample introduction interface, especially with regards to large volume samples, has often been neglected. We present a sample introduction interface that allows direct on-chip processing of crude stool samples for the detection of Helicobacter pylori (H. pylori). The principle of IFAST (immiscible filtration assisted by surface tension) was adapted to include a large volume sample chamber with a septum-based interface for stool sample introduction. Solid chaotropic salt and dry superparamagnetic particles (PMPs) could be stored on-chip and reconstituted upon sample addition, simplifying the process of release of DNA from H. pylori cells and its binding to the PMPs. Finally, the PMPs were pulled via a magnet through a washing chamber containing an immiscible oil solution and into an elution chamber where the DNA was released into aqueous media for subsequent analysis. The entire process required only 7 min while enabling a 40-fold reduction in working volume from crude biological samples. The combination of a real-world interface and rapid DNA extraction offers the potential for the methodology to be used in point-of-care (POC) devices.

We present a sample introduction interface that allows direct on-chip processing of crude stool samples for the detection of Helicobacter pylori (H. pylori). Efficient cell lysis and DNA extraction were achieved using stored reagents, reconstituted upon sample addition. Clinical stool samples were analysed using the device and successful amplification of a H. pylori specific target was achieved.

Many prototype microfluidic devices are manufactured by some form of micromachining or injection molding which often leaves poor quality surface. This work presents a simple method that both significantly reduces surface roughness of microfluidic chips and at the same time is used to bond devices. The method has been tested on devices made from poly(methyl methacrylate) (PMMA) and cyclic olefin copolymer (COC). The technique uses a solvent vapour exposure process which creates an irreversible bond between two substrates. It also re-flows the material, producing surfaces with optical quality.

Many prototype microfluidic devices are manufactured by some form of micromachining or injection molding which often leaves poor quality surface. This work presents a simple method that both significantly reduces surface roughness of microfluidic chips and at the same time is used to bond devices. The method has been tested on devices made from poly(methyl methacrylate) (PMMA) and cyclic olefin copolymer (COC). The technique uses a solvent vapour exposure process which creates an irreversible bond between two substrates. It also re-flows the material, producing surfaces with optical quality.

We demonstrate a versatile multilaminar flow microfluidic device in which magnetic particles are used as mobile supports for performing two important applications, namely (i) a clinically relevant sandwich immunoassay, and (ii) polye-lectrolyte coating of templates towards the fabrication of microcapsules for drug delivery applications. Furthermore, we demonstrate the use of a different force, diamagnetic repulsion, for deflecting polystyrene particles through a reagent stream with a view to performing multilaminar flow studies on diamagnetic material such as polymer particles and cells.

We demonstrate a rapid method of coating a layer of polymer onto magnetically modified yeast cells, so-called cyborg cells, in continuous flow within a microfluidic chamber. Laminar flow streams of polyelectrolyte and washing buffers were generated across the chamber, and the magnetic cells were deflected sequentially through the co-flowing streams via an external magnet, allowing polyelectrolyte deposition onto the cells immediately followed by the washing step, all in less than 90 s. This simple deposition technique shows promise for the functionalization of such cyborg cells for applications including bioelectronics, bioanalysis, and toxicity screening, while the addition of more reagent streams would enable the fabrication of multilayered capsules. © 2013 Elsevier B.V.

There is an increasing demand for easy and cost-effective methods to screen the toxicological impact of the growing number of chemical mixtures being generated by industry. Such a screening method has been developed using viable, genetically modified green fluorescent protein (GFP) reporter yeast that was magnetically functionalised and held within a microfluidic device. The GFP reporter yeast was used to detect genotoxicity by monitoring the exposure of the cells to a well-known genotoxic chemical (methyl methane sulfonate, MMS). The cells were magnetised using biocompatible positively charged PAH-stabilised magnetic nanoparticles with diameters around 15 nm. Gradient mixing was utilised to simultaneously expose yeast to a range of concentrations of toxins, and the effective fluorescence emitted from the produced GFP was measured. The magnetically enhanced retention of the yeast cells, with their facile subsequent removal and reloading, allowed for very convenient and rapid toxicity screening of a wide range of chemicals. This is the first report showing magnetic yeast within microfluidic devices in a simple bioassay, with potential applications to other types of fluorescent reporter yeast in toxicological and biomedical research. The microfluidic chip offers a simple and low-cost screening test that can be automated to allow multiple uses (adapted to different cell types) of the device on a wide range of chemicals and concentrations. © 2010 Springer-Verlag.

There is an increasing demand for easy and cost-effective methods to screen the toxicological impact of the growing number of chemical mixtures being generated by industry. Such a screening method has been developed using viable, genetically modified green fluorescent protein (GFP) reporter yeast that was magnetically functionalised and held within a microfluidic device. The GFP reporter yeast was used to detect genotoxicity by monitoring the exposure of the cells to a well-known genotoxic chemical (methyl methane sulfonate, MMS). The cells were magnetised using biocompatible positively charged PAH-stabilised magnetic nanoparticles with diameters around 15 nm. Gradient mixing was utilised to simultaneously expose yeast to a range of concentrations of toxins, and the effective fluorescence emitted from the produced GFP was measured. The magnetically enhanced retention of the yeast cells, with their facile subsequent removal and reloading, allowed for very convenient and rapid toxicity screening of a wide range of chemicals. This is the first report showing magnetic yeast within microfluidic devices in a simple bioassay, with potential applications to other types of fluorescent reporter yeast in toxicological and biomedical research. The microfluidic chip offers a simple and low-cost screening test that can be automated to allow multiple uses (adapted to different cell types) of the device on a wide range of chemicals and concentrations. © 2010 Springer-Verlag.

We demonstrate a rapid method of coating a layer of polymer onto magnetically modified yeast cells, so-called cyborg cells, in continuous flow within a microfluidic chamber. Laminar flow streams of polyelectrolyte and washing buffers were generated across the chamber, and the magnetic cells were deflected sequentially through the co-flowing streams via an external magnet, allowing polyelectrolyte deposition onto the cells immediately followed by the washing step, all in less than 90 s. This simple deposition technique shows promise for the functionalization of such cyborg cells for applications including bioelectronics, bioanalysis, and toxicity screening, while the addition of more reagent streams would enable the fabrication of multilayered capsules. © 2013 Elsevier B.V.

We demonstrate a versatile multilaminar flow microfluidic device in which magnetic particles are used as mobile supports for performing two important applications, namely (i) a clinically relevant sandwich immunoassay, and (ii) polye-lectrolyte coating of templates towards the fabrication of microcapsules for drug delivery applications. Furthermore, we demonstrate the use of a different force, diamagnetic repulsion, for deflecting polystyrene particles through a reagent stream with a view to performing multilaminar flow studies on diamagnetic material such as polymer particles and cells.