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The dynamic response of flexible filaments immersed in viscous fluids is important in cell mechanics, as well as other biological and industrial processes. In this paper, we propose a parallel computational framework to simulate the fluid-structure interactions in large assemblies of highly-flexible filaments immersed in a viscous fluid. We model the deformation of each filament in 3D with a C1 geometrically-exact large-deformation finite-element beam formulation and we describe the hydrodynamic interactions by a boundary element discretization of the Stokeslet model. We incorporate a contact algorithm that prevents fiber interpenetration and avoids previously reported numerical instabilities in the flow, thus providing the ability to describe the complex evolution of large clouds of fibers over long time spans. In order to support the required long-term integration, we use implicit integration of the solid-fluid-contact coupling. We address the challenges associated with the solution of the large and dense linear system for the hydrodynamic interactions by taking advantage of the massive parallelization offered by Graphic Processing Units (GPUs), which we test up to 1000 fibers and 45000 degrees of freedom. We validate the framework against the well-established response of the sedimentation of a single fiber under gravity in the low to moderate flexibility range. We then reproduce previous results and provide additional insights in the large to extreme flexibility range. Finally, we apply the framework to the analysis of the sedimentation of large clouds of filaments under gravity, as a function of fiber flexibility. Owing to the long time spans afforded by our computational framework, our simulations reproduce the breakup response observed experimentally in the lower flexibility range and provide new insights into the breakup of the initial clouds in the higher flexibility range., Green Open Access added to TU Delft Institutional Repository ‘You share, we take care!’ – Taverne project https://www.openaccess.nl/en/you-share-we-take-care Otherwise as indicated in the copyright section: the publisher is the copyright holder of this work and the author uses the Dutch legislation to make this work public., Aerospace Structures & Computational Mechanics

Intense surface eruptions are observed along the curved surface of a confined cylindrical film of hydrogel subject to laser-induced converging-diverging shock loading. Detailed numerical simulations are used to identify the dominant mechanisms causing mechanical instability. The mechanisms that produce surface instability are found to be fundamentally different from both acoustic parametric instability and shock-driven Richtmyer-Meshkov instability. The time scale of observed and simulated eruption formation is much larger than that of a single shock reflection, in stark contrast to previously studied shock-driven instabilities. Moreover, surface undulations are only found along external, as opposed to internal, soft solid boundaries. Specifically, classic bubble surface instability mechanisms do not occur in our experiments and here we comment only on the new surface undulations found along the outer boundary of solid hydrogel cylinders. Our findings indicate a new class of impulsively excited surface instability that is driven by cycles of internal shock reflections., Aerospace Structures & Computational Mechanics

Intense surface eruptions are observed along the curved surface of a confined cylindrical film of hydrogel subject to laser-induced converging-diverging shock loading. Detailed numerical simulations are used to identify the dominant mechanisms causing mechanical instability. The mechanisms that produce surface instability are found to be fundamentally different from both acoustic parametric instability and shock-driven Richtmyer-Meshkov instability. The time scale of observed and simulated eruption formation is much larger than that of a single shock reflection, in stark contrast to previously studied shock-driven instabilities. Moreover, surface undulations are only found along external, as opposed to internal, soft solid boundaries. Specifically, classic bubble surface instability mechanisms do not occur in our experiments and here we comment only on the new surface undulations found along the outer boundary of solid hydrogel cylinders. Our findings indicate a new class of impulsively excited surface instability that is driven by cycles of internal shock reflections.

Slender beams are often employed as constituents in engineering materials and structures. Prior experiments on lattices of slender beams have highlighted their complex failure response, where the interplay between buckling and fracture plays a critical role. In this paper, we introduce a novel computational approach for modeling fracture in slender beams subjected to large deformations. We adopt a state-of-the-art geometrically exact Kirchhoff beam formulation to describe the finite deformations of beams in three-dimensions. We develop a discontinuous Galerkin finite element discretization of the beam governing equations, incorporating discontinuities in the position and tangent degrees of freedom at the inter-element boundaries of the finite elements. Before fracture initiation, we enforce compatibility of nodal positions and tangents weakly, via the exchange of variationally-consistent forces and moments at the interfaces between adjacent elements. At the onset of fracture, these forces and moments transition to cohesive laws modeling interface failure. We conduct a series of numerical tests to verify our computational framework against a set of benchmarks and we demonstrate its ability to capture the tensile and bending fracture modes in beams exhibiting large deformations. Finally, we present the validation of our framework against fracture experiments of dry spaghetti rods subjected to sudden relaxation of curvature.

Department of Defense (DoD)

© 2020 Modeling the spontaneous evolution of morphology in natural systems and its preservation by proportionate growth remains a major scientific challenge. Yet, it is conceivable that if the basic mechanisms of growth and the coupled kinetic laws that orchestrate their function are accounted for, a minimal theoretical model may exhibit similar growth behaviors. The ubiquity of surface growth, a mechanism by which material is added or removed on the boundaries of the body, has motivated the development of theoretical models, which can capture the diffusion-coupled kinetics that govern it. However, due to their complexity, application of these models has been limited to simplified geometries. In this paper, we tackle these complexities by developing a finite element framework to study the diffusion-coupled growth and morphogenesis of finite bodies formed on uniform and flat substrates. We find that in this simplified growth setting, the evolving body exhibits a sequence of distinct growth stages that are reminiscent of natural systems, and appear spontaneously without any externally imposed regulation or coordination. The computational framework developed in this work can serve as the basis for future models that are able to account for growth in arbitrary geometrical settings, and can shed light on the basic physical laws that orchestrate growth and morphogenesis in the natural world.

© 2020 Elsevier B.V. The propagation of cracks driven by a pressurized fluid emerges in several areas of engineering, including structural, geotechnical, and petroleum engineering. In this paper, we present a robust numerical framework to simulate fluid-driven fracture propagation that addresses the challenges emerging in the simulation of this complex coupled nonlinear hydro-mechanical response. We observe that the numerical difficulties stem from the strong nonlinearities present in the fluid equations as well as those associated with crack propagation, from the quasi-static nature of the problem, and from the a priori unknown and potentially intricate crack geometries that may arise. An additional challenge is the need for large scale simulation owing to the mesh resolution requirements and the expected 3D character of the problem in practical applications. To address these challenges we model crack propagation with a high-order hybrid discontinuous Galerkin/cohesive zone model framework, which has proven massive scalability properties, and we model the lubrication flow inside the propagating cracks using continuous finite elements, furnishing a fully-coupled discretization of the solid and fluid equations. We find that a conventional Newton–Raphson solution algorithm is robust even in the presence of crack propagation. The parallel approach for solving the linearized coupled problem consists of standard iterative solvers based on domain decomposition. The resulting computational approach provides the ability to conduct highly-resolved and quasi-static simulations of fluid-driven fracture propagation with unspecified crack path. We conduct a series of numerical tests to verify the computational framework against known analytical solutions in the toughness and viscosity dominated regimes and we demonstrate its performance in terms of robustness and parallel scalability, enabling simulations of several million degrees of freedom on hundreds of processors.

The propagation of cracks driven by a pressurized fluid emerges in several areas of engineering, including structural, geotechnical, and petroleum engineering. We present a robust numerical framework to simulate fluid-driven fracture propagation that addresses the challenges emerging in the simulation of this complex coupled nonlinear hydro-mechanical response. We observe that the numerical difficulties stem from the strong nonlinearities present in the fluid equations as well as those associated with crack propagation, from the quasi-static nature of the problem, and from the a priori unknown and potentially intricate crack geometries that may arise. An additional challenge is the need for large scale simulation owing to the mesh resolution requirements and the expected 3D character of the problem in practical applications. To address these challenges we model crack propagation with a high-order hybrid discontinuous Galerkin / cohesive zone model framework, which has proven massive scalability properties, and we model the lubrication flow inside the propagating cracks using continuous finite elements, furnishing a fully-coupled discretization of the solid and fluid equations. The parallel approach for solving the linearized coupled problem consists of standard iterative solvers based on domain decomposition. The resulting computational approach provides the ability to conduct highly-resolved and quasi-static simulations of fluid-driven fracture propagation with unspecified crack path. We conduct a series of numerical tests to verify the computational framework against known analytical solutions in the toughness and viscosity dominated regimes and we demonstrate its performance in terms of robustness and parallel scalability, enabling simulations of several million degrees of freedom on hundreds of processors.

The present work deals with the numerical simulation of porous media subject to the coupled effects of mechanical compaction and reactive flows that can significantly alter the porosity due to dissolution, precipitation or transformation of the solid matrix. These chemical processes can be effectively modelled as ODEs with discontinuous right hand side, where the discontinuity depends on time and on the solution itself. Filippov theory can be applied to prove existence and to determine the solution behaviour at the discontinuities. From the numerical point of view, tailored numerical schemes are needed to guarantee positivity, mass conservation and accuracy. In particular, we rely on an event-driven approach such that, if the trajectory crosses a discontinuity, the transition point is localized exactly and integration is restarted accordingly.