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Seaweed from Greenland has potential as a food source. However, human sewage is discharged directly to the sea in the vicinity of the communities, a practice which could lead to the seaweed becoming contaminated by human pathogens. The objective of this study was to investigate the effect of wastewater discharge on the bacterial communities of wild populations of Fucus sp. sampled in the tidal zones in the vicinity of Sarfannguit, a smaller settlement (∼110 inhabitants) with limited discharge, and Sisimiut, Greenland's second biggest town (∼5500 inhabitants). Fecal indicator bacteria (coliforms, Escherichia coli and the human fecal molecular marker HF183 [Fucus sp. only]) were consistently detected on Fucus sp. and in seawater from Sisimiut. In contrast, coliforms and E. coli were only detected once in samples collected close to the waste dump site in Sarfannguit. Presence of fecal indicator bacteria in seawater and on Fucus sp. coincided, indicating the utility of surveying seawater. MALDI-TOF mass spectrometry analysis of bacterial isolates identified fish and human pathogens on seaweed from Sisimiut while >80% of isolates from Sarfannguit could not be identified using existing data bases. Amplicon sequence variants belonging to Rhodobacteraceae and Flavobacteriaceae were dominant families in all Fucus sp. samples. However, wastewater discharge effected major changes in the overall composition of the seaweed microbiota as evidenced by analysis of the beta diversity. In conclusion, the microbiota on Fucus sp. harvested in the intertidal zones in a small, relatively unimpacted community, and close to the wastewater discharge of a larger community showed marked differences and the presence of human pathogens on sewage impacted Fucus sp. from the large community. It is recommended that microbiological criteria and guidelines regarding suitable seaweed harvest and cultivation sites be estab

In this article we draw on an interdisciplinary study on drinking water quality in Maputo, the capital of Mozambique, to examine the nature, scale, and politics of waterborne diseases. We show how water contamination and related diseases are discursively framed as household risks, thereby concealing the politics of uneven exposure to contaminated water and placing the burden of being healthy on individuals. In contrast, we propose that uneven geographies of waterborne diseases are best understood as the product of Maputo's urban metabolism, in which attempts at being sanitary and healthy are caught up in relations of power, class, and variegated citizenship. Waterborne diseases are the result of complex and fragmented circulations and intersections of (waste)waters, generated by uneven urban development, heterogeneous infrastructure configurations, and everyday practices to cope with basic service deficits, in conjunction with increasing climatic variability. The latrine-from which ultimately contamination and diseases spread-is an outcome of these processes, rather than the site to be blamed. This article also advances an interdisciplinary framework for analyzing urban metabolism and deepening its explanatory potential. It serves as a demonstration of how interdisciplinary approaches might be taken forward to generate new readings of more-than-human metabolic processes at distinct temporal and spatial scales.

In this article we draw on an interdisciplinary study on drinking water quality in Maputo, the capital of Mozambique, to examine the nature, scale, and politics of waterborne diseases. We show how water contamination and related diseases are discursively framed as household risks, thereby concealing the politics of uneven exposure to contaminated water and placing the burden of being healthy on individuals. In contrast, we propose that uneven geographies of waterborne diseases are best understood as the product of Maputo's urban metabolism, in which attempts at being sanitary and healthy are caught up in relations of power, class, and variegated citizenship. Waterborne diseases are the result of complex and fragmented circulations and intersections of (waste)waters, generated by uneven urban development, heterogeneous infrastructure configurations, and everyday practices to cope with basic service deficits, in conjunction with increasing climatic variability. The latrine-from which ultimately contamination and diseases spread-is an outcome of these processes, rather than the site to be blamed. This article also advances an interdisciplinary framework for analyzing urban metabolism and deepening its explanatory potential. It serves as a demonstration of how interdisciplinary approaches might be taken forward to generate new readings of more-than-human metabolic processes at distinct temporal and spatial scales.

In this article we draw on an interdisciplinary study on drinking water quality in Maputo, the capital of Mozambique, to examine the nature, scale, and politics of waterborne diseases. We show how water contamination and related diseases are discursively framed as household risks, thereby concealing the politics of uneven exposure to contaminated water and placing the burden of being healthy on individuals. In contrast, we propose that uneven geographies of waterborne diseases are best understood as the product of Maputo's urban metabolism, in which attempts at being sanitary and healthy are caught up in relations of power, class, and variegated citizenship. Waterborne diseases are the result of complex and fragmented circulations and intersections of (waste)waters, generated by uneven urban development, heterogeneous infrastructure configurations, and everyday practices to cope with basic service deficits, in conjunction with increasing climatic variability. The latrine-from which ultimately contamination and diseases spread-is an outcome of these processes, rather than the site to be blamed. This article also advances an interdisciplinary framework for analyzing urban metabolism and deepening its explanatory potential. It serves as a demonstration of how interdisciplinary approaches might be taken forward to generate new readings of more-than-human metabolic processes at distinct temporal and spatial scales.

In this article we draw on an interdisciplinary study on drinking water quality in Maputo, the capital of Mozambique, to examine the nature, scale, and politics of waterborne diseases. We show how water contamination and related diseases are discursively framed as household risks, thereby concealing the politics of uneven exposure to contaminated water and placing the burden of being healthy on individuals. In contrast, we propose that uneven geographies of waterborne diseases are best understood as the product of Maputo's urban metabolism, in which attempts at being sanitary and healthy are caught up in relations of power, class, and variegated citizenship. Waterborne diseases are the result of complex and fragmented circulations and intersections of (waste)waters, generated by uneven urban development, heterogeneous infrastructure configurations, and everyday practices to cope with basic service deficits, in conjunction with increasing climatic variability. The latrine-from which ultimately contamination and diseases spread-is an outcome of these processes, rather than the site to be blamed. This article also advances an interdisciplinary framework for analyzing urban metabolism and deepening its explanatory potential. It serves as a demonstration of how interdisciplinary approaches might be taken forward to generate new readings of more-than-human metabolic processes at distinct temporal and spatial scales.

The naturally oligotrophic rivers in northern Sweden are generally characterized by a low pollution level. However, an increasing trend in E. coli contamination has been observed in the most upstream catchment area of one of the large rivers of Norhtern Sweden. This change in microbial water quality will have a severe negative impact on the ecosystem, wild animals, visitors, inhabitants as well as indigenous people dependent on the land for their daily income, such as Sami herders. To limit or prevent the discharge of fecal pollution into the river system and also to estimate the danger that this contamination can pose to human health, it is important to know the source of this contamination. Based solely on structured water sampling, it is still very difficult to pinpoint the sources of fecal pollution. Therefore, a combined analysis of eDNA and microbial source tracking of E. coli isolates from river samples was performed to identify the source of fecal pollution in the research area. E. coli isolates were collected from water samples taken along the tributaries Enan and Handölan. Simultaneously, eDNA samples were collected on the same locations. Additionally, fecal and sewage samples were taken to collect E. coli isolates with a known host source being either human, beaver or reindeer. Also, sequences from genomic E. coli DNA originating from human (obtained from NCBI and University of Alberta, School of Public Health) and from beaver (obtained from University of Alberta, School of Public Health) were collected and included in the study. E. coli isolates were used for the amplification of three Intergenic Regions and subsequent analysis of Single Nucleotide Polymorphisms to identify host-specific genetic markers in the E. coli genome. eDNA samples were subjected to metabarcoding targeting mammal DNA to determine the relative species abundance in the water samples. The E. coli prevalence in the research area varies between <1 and 210 CFU/100mL and is dependent, ECWA-NOR

Narta Lagoon is one of the biggest Lagoons in Albania. It is situated in the southern part of the Vjosa River delta. Two canals in the northwest and southwest parts of the lagoon connect it to the Adriatic Sea. These artificial canals enable the water exchange process with the sea during tidal flow. Vjose - Narta area is considered a Protected Landscape, so environmental monitoring is important. Setting and design: Water samples were taken monthly, at six evenly distributed sample stations. The study was conducted from January – to December 2018. Materials and methods: The assessment of microbial contamination was performed with the MPN method. Total coliform, fecal coliform, and fecal streptococci were tested as fecal contamination indicators. PH and salinity were the physicochemical parameters analyzed. Conclusions: the cleanest sampling station is the one near contact with the seawater. The most polluted stations are stations 2, 4, and 6. Temperature values range from 5 oC in January to 33 oC in August. Lagoon pollution is caused by an anthropogenic factor as well as a lack of appropriate cleaning strategies.

Narta Lagoon is one of the biggest Lagoons in Albania. It is situated in the southern part of the Vjosa River delta. Two canals in the northwest and southwest parts of the lagoon connect it to the Adriatic Sea. These artificial canals enable the water exchange process with the sea during tidal flow. Vjose - Narta area is considered a Protected Landscape, so environmental monitoring is important. Setting and design: Water samples were taken monthly, at six evenly distributed sample stations. The study was conducted from January – to December 2018. Materials and methods: The assessment of microbial contamination was performed with the MPN method. Total coliform, fecal coliform, and fecal streptococci were tested as fecal contamination indicators. PH and salinity were the physicochemical parameters analyzed. Conclusions: the cleanest sampling station is the one near contact with the seawater. The most polluted stations are stations 2, 4, and 6. Temperature values range from 5 oC in January to 33 oC in August. Lagoon pollution is caused by an anthropogenic factor as well as a lack of appropriate cleaning strategies.

In this article we draw on an interdisciplinary study on drinking water quality in Maputo, the capital of Mozambique, to examine the nature, scale, and politics of waterborne diseases. We show how water contamination and related diseases are discursively framed as household risks, thereby concealing the politics of uneven exposure to contaminated water and placing the burden of being healthy on individuals. In contrast, we propose that uneven geographies of waterborne diseases are best understood as the product of Maputo's urban metabolism, in which attempts at being sanitary and healthy are caught up in relations of power, class, and variegated citizenship. Waterborne diseases are the result of complex and fragmented circulations and intersections of (waste)waters, generated by uneven urban development, heterogeneous infrastructure configurations, and everyday practices to cope with basic service deficits, in conjunction with increasing climatic variability. The latrine-from which ultimately contamination and diseases spread-is an outcome of these processes, rather than the site to be blamed. This article also advances an interdisciplinary framework for analyzing urban metabolism and deepening its explanatory potential. It serves as a demonstration of how interdisciplinary approaches might be taken forward to generate new readings of more-than-human metabolic processes at distinct temporal and spatial scales.

This study assessed the chemical substances that can be used to investigate fecal contamination of surface waters and how they can be used to indicate and trace fecal contamination in oligotrophic rivers of Northern Sweden. It was found that, from previous studies, several chemicals can be used to trace fecal contamination of surface water, and these include pharmaceuticals, personal care products, sterols, stanols and bile acids. Pharmaceuticals have been successfully used to indicate fecal contamination in many tropical countries and some countries in the cold regions and thus can also be applied to oligotrophic rivers. Sterols, stanols and bile acids make it possible to accurately indicate and trace the different sources of fecal contamination and can also be used to distinguish between the different organisms from which those sterols and bile acids emanate. For these groups of chemicals analytical methods such as chromatography and mass spectrometry are used to decipher the different chemicals in the test samples of water or sediment. Overall, these methods can be used concurrently but the sterols and bile acids have more specificity compared to the pharmaceuticals and personal care products, 2021-07-06

This study assessed the chemical substances that can be used to investigate fecal contamination of surface waters and how they can be used to indicate and trace fecal contamination in oligotrophic rivers of Northern Sweden. It was found that, from previous studies, several chemicals can be used to trace fecal contamination of surface water, and these include pharmaceuticals, personal care products, sterols, stanols and bile acids. Pharmaceuticals have been successfully used to indicate fecal contamination in many tropical countries and some countries in the cold regions and thus can also be applied to oligotrophic rivers. Sterols, stanols and bile acids make it possible to accurately indicate and trace the different sources of fecal contamination and can also be used to distinguish between the different organisms from which those sterols and bile acids emanate. For these groups of chemicals analytical methods such as chromatography and mass spectrometry are used to decipher the different chemicals in the test samples of water or sediment. Overall, these methods can be used concurrently but the sterols and bile acids have more specificity compared to the pharmaceuticals and personal care products, 2021-07-06

Quantifying the contribution of individual exposure pathways to a child's total ingestion of fecal matter could help prioritize interventions to reduce environmental enteropathy and diarrhea. This study used data on fecal contamination of drinking water, food, soil, hands, and objects and second-by-second data on children's contacts with these environmental reservoirs in rural Bangladesh to assess the relative contribution of different pathways to children's ingestion of fecal indicator bacteria and if ingestion decreased with the water, sanitation, and hygiene interventions implemented in the WASH Benefits Trial. Our model estimated that rural Bangladeshi children <36 months old consume 3.6-4.9 log10 most probable number E. coli/day. Among children <6 months, placing objects in the mouth accounted for 60% of E. coli ingested. For children 6-35 months old, mouthing their own hands, direct soil ingestion, and ingestion of contaminated food were the primary pathways of E. coli ingestion. The amount of E. coli ingested by children and the predominant pathways of E. coli ingestion were unchanged by the water, sanitation, and hygiene interventions. These results highlight contaminated soil, children's hands, food, and objects as primary pathways of E. coli ingestion and emphasize the value of intervening along these pathways.

Understanding household-level transmission pathways of fecal pathogens can provide insight for developing effective strategies to reduce diarrheal illness in low- and middle-income countries. We applied whole bacterial community analysis to investigate pathways of bacterial transmission in 50 rural Bangladeshi households. SourceTracker was used to quantify the shared microbial community in household reservoirs (stored drinking water, soil, and hands) and estimate the percentage of fecal-associated bacteria from child and mothers' feces in these reservoirs. Among the reservoirs studied, most bacterial transfer occurred between mothers' and children's hands and between mothers' hands and stored water. The relative percentage of human fecal-associated bacteria in all household reservoirs was low. We also quantified the number of identical amplicon sequence variants within and between individual households to assess bacterial community exchange in the domestic environment. Intra-household sharing of bacteria between mothers' and children's hands and between hands and soil was significantly greater than inter-household sharing.

Understanding household-level transmission pathways of fecal pathogens can provide insight for developing effective strategies to reduce diarrheal illness in low- and middle-income countries. We applied whole bacterial community analysis to investigate pathways of bacterial transmission in 50 rural Bangladeshi households. SourceTracker was used to quantify the shared microbial community in household reservoirs (stored drinking water, soil, and hands) and estimate the percentage of fecal-associated bacteria from child and mothers' feces in these reservoirs. Among the reservoirs studied, most bacterial transfer occurred between mothers' and children's hands and between mothers' hands and stored water. The relative percentage of human fecal-associated bacteria in all household reservoirs was low. We also quantified the number of identical amplicon sequence variants within and between individual households to assess bacterial community exchange in the domestic environment. Intra-household sharing of bacteria between mothers' and children's hands and between hands and soil was significantly greater than inter-household sharing.

Quantifying the contribution of individual exposure pathways to a child's total ingestion of fecal matter could help prioritize interventions to reduce environmental enteropathy and diarrhea. This study used data on fecal contamination of drinking water, food, soil, hands, and objects and second-by-second data on children's contacts with these environmental reservoirs in rural Bangladesh to assess the relative contribution of different pathways to children's ingestion of fecal indicator bacteria and if ingestion decreased with the water, sanitation, and hygiene interventions implemented in the WASH Benefits Trial. Our model estimated that rural Bangladeshi children <36 months old consume 3.6-4.9 log10 most probable number E. coli/day. Among children <6 months, placing objects in the mouth accounted for 60% of E. coli ingested. For children 6-35 months old, mouthing their own hands, direct soil ingestion, and ingestion of contaminated food were the primary pathways of E. coli ingestion. The amount of E. coli ingested by children and the predominant pathways of E. coli ingestion were unchanged by the water, sanitation, and hygiene interventions. These results highlight contaminated soil, children's hands, food, and objects as primary pathways of E. coli ingestion and emphasize the value of intervening along these pathways.

Understanding household-level transmission pathways of fecal pathogens can provide insight for developing effective strategies to reduce diarrheal illness in low- and middle-income countries. We applied whole bacterial community analysis to investigate pathways of bacterial transmission in 50 rural Bangladeshi households. SourceTracker was used to quantify the shared microbial community in household reservoirs (stored drinking water, soil, and hands) and estimate the percentage of fecal-associated bacteria from child and mothers feces in these reservoirs. Among the reservoirs studied, most bacterial transfer occurred between mothers and childrens hands and between mothers hands and stored water. The relative percentage of human fecal-associated bacteria in all household reservoirs was low. We also quantified the number of identical amplicon sequence variants within and between individual households to assess bacterial community exchange in the domestic environment. Intra-household sharing of bacteria between mothers and childrens hands and between hands and soil was significantly greater than inter-household sharing.

This study was performed to improve the ability to predict the concentrations of Escherichia coli in oyster meat and estuarine waters by using environmental parameters, and microbiological and heavy metal contamination from shellfish growing area in southern Thailand. Oyster meat (n = 144) and estuarine waters (n = 96) were tested for microbiological and heavy metal contamination from March 2016 to February 2017. Prevalence and mean concentrations of E. coli were 93.1% and 4.6 × 103 most probable number (MPN)/g in oyster meat, and 78.1% and 2.2 × 102 MPN/100 mL in estuarine water. Average 7-day precipitation, ambient air temperature, and the presence of Salmonella were associated with the concentrations of E. coli in oyster meat (p < 0.05). Raw data (MPN/g of oyster meat and MPN/100 mL of estuarine water) and log-transformed data (logMPN/g of oyster meat and logMPN/100 mL of estuarine water) of E. coli concentrations were examined within two contrasting regression models. However, the more valid predictions were conducted using non-log transformed values. These findings indicate that non-log transformed data can be used for building more accurate statistical models in microbiological food safety, and that significant environmental parameters can be used as a part of a rapid warning system to predict levels of E. coli before harvesting oysters.

Aquatic recreation in urban estuaries worldwide is often restricted by fecal pollution. Variability in the occurrence of fecal pathogens and their differential virulence potentials within these estuaries may result in variable public health risks. To address this hypothesis, Campylobacter were isolated from the Yarra River estuary, Australia and then characterized via HeLa cell cytotoxicity and attachment to and the invasion of Caco-2 monolayers. Overall, 54% (n=216) of estuarine samples (water and sediment combined) yielded biochemically confirmed culturable Campylobacter; higher detection was recorded in water (92%, n=90) than in the bank and bed sediments combined (27%, n=126). The seasonality of occurrence was not significant. HeLa cell cytotoxicity revealed that estuarine Campylobacter had low cytotoxin titers; the 95% confidence interval (CI) ranged between 61 and 85, which was markedly lower than the mean value (~386) for the C. jejuni 11168 reference pathogenic strain. The Caco-2 attachment of estuarine Campylobacter isolates (n=189) revealed that the 95%CI for the attachment efficiency of the test strains ranged between 0.09 and 0.1%, with only 3.7% having a higher efficiency than the 5th percentile value for C. jejuni 11168. None of the estuarine strains exhibited Caco-2 invasion capabilities. In contrast to the common assumption during quantitative microbial/risk assessments (QMRAs) that all environmental strains are pathogenic, the present results revealed that Campylobacter within the Yarra River estuary had very low virulence potential. Since this is the first study to use human epithelial cell lines to characterize estuary-borne pathogens, these results generate valuable insights for a better understanding of the public health risks in urban estuaries that will underpin more robust QMRAs.

This study was performed to improve the ability to predict the concentrations of Escherichia coli in oyster meat and estuarine waters by using environmental parameters, and microbiological and heavy metal contamination from shellfish growing area in southern Thailand. Oyster meat (n = 144) and estuarine waters (n = 96) were tested for microbiological and heavy metal contamination from March 2016 to February 2017. Prevalence and mean concentrations of E. coli were 93.1% and 4.6 × 103 most probable number (MPN)/g in oyster meat, and 78.1% and 2.2 × 102 MPN/100 mL in estuarine water. Average 7-day precipitation, ambient air temperature, and the presence of Salmonella were associated with the concentrations of E. coli in oyster meat (p < 0.05). Raw data (MPN/g of oyster meat and MPN/100 mL of estuarine water) and log-transformed data (logMPN/g of oyster meat and logMPN/100 mL of estuarine water) of E. coli concentrations were examined within two contrasting regression models. However, the more valid predictions were conducted using non-log transformed values. These findings indicate that non-log transformed data can be used for building more accurate statistical models in microbiological food safety, and that significant environmental parameters can be used as a part of a rapid warning system to predict levels of E. coli before harvesting oysters.

Field trials were conducted in July-August and October 2012 to quantify the inactivation rate of Escherichia coli O157:H7 when mixed with fecal slurry and applied to romaine lettuce leaves. Lettuce was grown under commercial conditions in Salinas Valley, California. One-half milliliter of rabbit, chicken, or pig fecal slurry, containing an average of 4.05 × 107 CFU E. coli O157:H7 (C0), was inoculated onto the upper (adaxial) surface of a lower leaf on 288 heads of lettuce per trial immediately following a 2.5 h irrigation event. To estimate the bacterial inactivation rate as a function of time, fecal matrix, irrigation and seasonal climate effects, sets of lettuce heads (n = 28) were sampled each day over 10 days and the concentration of E. coli O157:H7 (Ct) determined. E. coli O157:H7 was detected on 100% of heads during the 10-day duration, with concentrations ranging from ≤340 MPN/head (∼5-log reduction) to >3.45 × 1012 MPN/head (∼5-log growth). Relative to C0, on day 10 (Ct = 12) we observed an overall 2.6-log and 3.2-log mean reduction of E. coli O157:H7 in July and October, respectively. However, we observed relative maximum concentrations due to bacterial growth on day 6 (maximum Ct = 8) apparently stimulated by foliar irrigation on day 5. From this maximum there was a mean 5.3-log and 5.1-log reduction by day 10 (Ct = 12) for the July and October trials, respectively. This study provides insight into the inactivation and growth kinetics of E. coli O157:H7 on romaine lettuce leaves under natural field conditions. This study provides evidence that harvesting within 24 h post irrigation has the potential to increase the concentration of E. coli O157:H7 contamination, if present on heads of romaine lettuce; foliar irrigation can temporarily stimulate substantial regrowth of E. coli O157:H7.

Microbial source tracking (MST) analysis is essential to identifying and mitigating the fecal pollution of water resources. The signature-based MST method uses a library of sequences to identify contaminants based on operational taxonomic units (OTUs) that are unique to a certain source. However, no clear guidelines for how to incorporate OTU overlap or natural variation in the raw water bacterial community into MST analyses exist. We investigated how the inclusion of bacterial overlap between sources in the library affects source prediction accuracy. To achieve this, large-scale sampling-including feces from seven species, raw sewage, and raw water samples from water treatment plants - was followed by 16S rRNA amplicon sequencing. The MST library was defined using three settings: (i) no raw water communities represented; (ii) raw water communities selected through clustering analysis; and (iii) local water communities collected across consecutive years. The results suggest that incorporating either the local background or representative bacterial composition improves MST analyses, as the results were positively correlated to measured levels of fecal indicator bacteria and the accuracy at which OTUs were assigned to the correct contamination source increased fourfold. Using the proportion of OTUs with high source origin probability, underpinning a contaminating signal, is a solid foundation in a framework for further deciphering and comparing contaminating signals derived in signature-based MST approaches. In conclusion, incorporating background bacterial composition of water in MST can improve mitigation efforts for minimizing the spread of pathogenic and antibiotic resistant bacteria into essential freshwater resources.

This study identified sources of fecal contamination in three different French headwater and coastal catchments (the Justiçou, Pen an Traon, and La Fresnaye) using a combination of microbial source tracking tools. The tools included bacterial markers (three host-associated Bacteroidales) and chemical markers (six fecal stanols), which were monitored monthly over one or two years in addition to fecal indicator bacteria. 168 of the 240 freshwater and marine water samples had Escherichia coli (E. coli) or enterococci concentrations higher than “excellent” European water quality threshold. In the three catchments, the results suggested that the fecal contamination appeared to be primarily from an animal origin and particularly from a bovine origin in 52% (Rum2Bac) and 46% (Bstanol) of the samples and to a lesser extent from a porcine origin in 19% (Pig2Bac) and 21% (Pstanol) of the samples. Our results suggested a human fecal contamination in 56% (HF183) and 32% (Hstanol) of the samples. Rainfall also impacted the source identification of microbial contamination. In general, these findings could inform effective implementation of microbial source tracking strategies, specifically that the location of sampling points must include variability at the landscape scale.

In this paper, multivariate analysis of sterol concentrations detected in river sediment samples was performed. In order to remove co-dependence of values, concentrations of sterols were transformed using centered log-ratio (CLR) transformation. The main objective of the work was to point out the damaging effects of working in the wrong geometry on the principal component analysis (PCA) assessment of sterol pollution. In order to determine if the dimension lost have effect on the principal component analysis of sterols in sediments, we have performed the PCA using raw and log-ratio transformed sterol data. Additionally, two rounded zero replacement approaches, i.e. a simple-substitution method (DL/2, 0.55DL and DL/root 2) and multiplicative replacement strategy (0.65 DL), were compared in order to determine if the replacement values have an effect on PCA results and conclusions. Relevant differences were noted by comparing the results of the principal component analysis obtained with raw data and log-ratio transformed sterol data. Only the PC loadings obtained from the CLR PCA allowed the clear distinction between human-sourced pollution and biogenic sources of sterols, whereas in the case of PCA with raw data loadings were all grouped almost in a single quadrant. For the small proportion of rounded zeros (not more than 10%), two different replacement approaches did not have any effect on transformed PCA output. The results presented in this work have shown that the effect of "closure" in the sterol data can be easily observed from the PCA biplot, and that it obstructs the evaluation of human contribution to pollution of river sediments. Therefore, prior to the PCA, sterol concentrations must be CLR transformed in order to perform a reliable assessment of the sewage contamination.

This study identified sources of fecal contamination in three different French headwater and coastal catchments (the Justiçou, Pen an Traon, and La Fresnaye) using a combination of microbial source tracking tools. The tools included bacterial markers (three host-associated Bacteroidales) and chemical markers (six fecal stanols), which were monitored monthly over one or two years in addition to fecal indicator bacteria. 168 of the 240 freshwater and marine water samples had Escherichia coli (E. coli) or enterococci concentrations higher than “excellent” European water quality threshold. In the three catchments, the results suggested that the fecal contamination appeared to be primarily from an animal origin and particularly from a bovine origin in 52% (Rum2Bac) and 46% (Bstanol) of the samples and to a lesser extent from a porcine origin in 19% (Pig2Bac) and 21% (Pstanol) of the samples. Our results suggested a human fecal contamination in 56% (HF183) and 32% (Hstanol) of the samples. Rainfall also impacted the source identification of microbial contamination. In general, these findings could inform effective implementation of microbial source tracking strategies, specifically that the location of sampling points must include variability at the landscape scale.

This study identified sources of fecal contamination in three different French headwater and coastal catchments (the Justiçou, Pen an Traon, and La Fresnaye) using a combination of microbial source tracking tools. The tools included bacterial markers (three host-associated Bacteroidales) and chemical markers (six fecal stanols), which were monitored monthly over one or two years in addition to fecal indicator bacteria. 168 of the 240 freshwater and marine water samples had Escherichia coli (E. coli) or enterococci concentrations higher than “excellent” European water quality threshold. In the three catchments, the results suggested that the fecal contamination appeared to be primarily from an animal origin and particularly from a bovine origin in 52% (Rum2Bac) and 46% (Bstanol) of the samples and to a lesser extent from a porcine origin in 19% (Pig2Bac) and 21% (Pstanol) of the samples. Our results suggested a human fecal contamination in 56% (HF183) and 32% (Hstanol) of the samples. Rainfall also impacted the source identification of microbial contamination. In general, these findings could inform effective implementation of microbial source tracking strategies, specifically that the location of sampling points must include variability at the landscape scale.

In this paper, multivariate analysis of sterol concentrations detected in river sediment samples was performed. In order to remove co-dependence of values, concentrations of sterols were transformed using centered log-ratio (CLR) transformation. The main objective of the work was to point out the damaging effects of working in the wrong geometry on the principal component analysis (PCA) assessment of sterol pollution. In order to determine if the dimension lost have effect on the principal component analysis of sterols in sediments, we have performed the PCA using raw and log-ratio transformed sterol data. Additionally, two rounded zero replacement approaches, i.e. a simple-substitution method (DL/2, 0.55DL and DL/root 2) and multiplicative replacement strategy (0.65 DL), were compared in order to determine if the replacement values have an effect on PCA results and conclusions. Relevant differences were noted by comparing the results of the principal component analysis obtained with raw data and log-ratio transformed sterol data. Only the PC loadings obtained from the CLR PCA allowed the clear distinction between human-sourced pollution and biogenic sources of sterols, whereas in the case of PCA with raw data loadings were all grouped almost in a single quadrant. For the small proportion of rounded zeros (not more than 10%), two different replacement approaches did not have any effect on transformed PCA output. The results presented in this work have shown that the effect of "closure" in the sterol data can be easily observed from the PCA biplot, and that it obstructs the evaluation of human contribution to pollution of river sediments. Therefore, prior to the PCA, sterol concentrations must be CLR transformed in order to perform a reliable assessment of the sewage contamination.

Rivers are often challenged by fecal contaminations. The barrier effect of sediments against fecal bacteria was investigated through the use of a microbial source tracking (MST) toolbox, and by Next Generation Sequencing (NGS) of V5-V6 16S rRNA gene (rrs) sequences. Non-metric multi-dimensional scaling analysis of V5-V6 16S rRNA gene sequences differentiated bacteriomes according to their compartment of origin i.e., surface water against benthic and hyporheic sediments. Classification of these reads showed the most prevalent operating taxonomic units (OTU) to be allocated to Flavobacterium and Aquabacterium. Relative numbers of Gaiella, Haliangium, and Thermoleophilum OTU matched the observed differentiation of bacteriomes according to river compartments. OTU patterns were found impacted by combined sewer overflows (CSO) through an observed increase in diversity from the sewer to the hyporheic sediments. These changes appeared driven by direct transfers of bacterial contaminants from wastewaters but also by organic inputs favoring previously undetectable bacterial groups among sediments. These NGS datasets appeared more sensitive at tracking community changes than MST markers. The human-specific MST marker HF183 was strictly detected among CSO-impacted surface waters and not river bed sediments. The ruminant-specific DNA marker was more broadly distributed but intense bovine pollution was required to detect transfers from surface water to benthic and hyporheic sediments. Some OTU showed distribution patterns in line with these MST datasets such as those allocated to the Aeromonas, Acinetobacter, and Pseudomonas. Fecal indicators (Escherichia coli and total thermotolerant coliforms) were detected all over the river course but their concentrations were not correlated with MST ones. Overall, MST and NGS datasets suggested a poor colonization of river sediments by bovine and sewer bacterial contaminants. No environmental outbreak of these bacterial contaminants was dete

Rivers are often challenged by fecal contaminations. The barrier effect of sediments against fecal bacteria was investigated through the use of a microbial source tracking (MST) toolbox, and by Next Generation Sequencing (NGS) of V5-V6 16S rRNA gene (rrs) sequences. Non-metric multi-dimensional scaling analysis of V5-V6 16S rRNA gene sequences differentiated bacteriomes according to their compartment of origin i.e., surface water against benthic and hyporheic sediments. Classification of these reads showed the most prevalent operating taxonomic units (OTU) to be allocated to Flavobacterium and Aquabacterium. Relative numbers of Gaiella, Haliangium, and Thermoleophilum OTU matched the observed differentiation of bacteriomes according to river compartments. OTU patterns were found impacted by combined sewer overflows (CSO) through an observed increase in diversity from the sewer to the hyporheic sediments. These changes appeared driven by direct transfers of bacterial contaminants from wastewaters but also by organic inputs favoring previously undetectable bacterial groups among sediments. These NGS datasets appeared more sensitive at tracking community changes than MST markers. The human-specific MST marker HF183 was strictly detected among CSO-impacted surface waters and not river bed sediments. The ruminant-specific DNA marker was more broadly distributed but intense bovine pollution was required to detect transfers from surface water to benthic and hyporheic sediments. Some OTU showed distribution patterns in line with these MST datasets such as those allocated to the Aeromonas, Acinetobacter, and Pseudomonas. Fecal indicators (Escherichia coli and total thermotolerant coliforms) were detected all over the river course but their concentrations were not correlated with MST ones. Overall, MST and NGS datasets suggested a poor colonization of river sediments by bovine and sewer bacterial contaminants. No environmental outbreak of these bacterial contaminants was dete

Med en tillväxt på 10-20 % mellan åren 2004 och 2010 är hästnäringen en växande bransch. Kopplat till konstaterat höga utsläpp av näringsämnen från hästanläggningar och indikationer på utsläpp även av föroreningar i form av fekala mikroorganismer gör det till en bransch som är angelägen är undersöka med avseende på dess miljöpåverkan. Studien jämförde halter av fekala indikatorbakterier i vattendrag uppströms och nedströms större hästanläggningar, och analyserade också förekomsten av ESBL-producerande E.coli både i vattendragen och i gödsel. Ingen Salmonella spp., som analyserades som ett exempel på en fekal patogen, hittades i studien. Ingen koppling kunde göras mellan hästanläggningar och vattnets mikrobiologiska kvalité, även om enstaka gårdar gav upphov till misstanke om förorening. Resultaten kan vara falskt negativa då studien genomfördes vid torrt väder utan nämnvärd avrinning. ESBL-producerande E.coli hittades i ca 30 % av både vatten- och gödselproverna. Fler vattenprov nedströms anläggningarna var positiva för resistenta E.coli än uppströms. Alla isolat var multiresistenta i varierande grad, och flera var resistenta mot de antibiotika som används till häst. Resultaten tyder på att ESBL-producerande E.coli förekommer spritt i miljön och förekommer på besättningsnivå i hög utsträckning., The horse industry is growing in Sweden with a growth rate of 10-20% between the years 2004 to 2010. Previous studies tell us of high emissions of nutrients, and suggest possible emissions of fecal microorganisms. Altogether this makes it an interesting industry to study regarding its environmental effects. This study compared the amount of fecal indicator bacteria in waters up- and downstream of larger horse stables, and analyzed the prevalence of ESBL-producing E.coli in both the waters and horse manure. Salmonella spp. was analyzed as an example of a fecal pathogen, but not found in any of the samples. No correlation was found between higher numbers of indicator bacteria and the stables, though specific stables were suspected to be a source of contamination. These may be false negative results due to very dry weather during the period of sampling resulting in minimal runoff. ESBL-producing E.coli were found in approximately 30 % of both water and manure samples. More water samples downstream were positive for ESBL-producing E.coli than upstream. All the isolates carried multi-resistance, and many were resistant to several, or all, of the antibiotics used to treat horses. The results indicate a widespread prevalence in the environment and in horses on herd level.

Rivers are often challenged by fecal contaminations. The barrier effect of sediments against fecal bacteria was investigated through the use of a microbial source tracking (MST) toolbox, and by Next Generation Sequencing (NGS) of V5-V6 16S rRNA gene (rrs) sequences. Non-metric multi-dimensional scaling analysis of V5-V6 16S rRNA gene sequences differentiated bacteriomes according to their compartment of origin i.e., surface water against benthic and hyporheic sediments. Classification of these reads showed the most prevalent operating taxonomic units (OTU) to be allocated to Flavobacterium and Aquabacterium. Relative numbers of Gaiella, Haliangium, and Thermoleophilum OTU matched the observed differentiation of bacteriomes according to river compartments. OTU patterns were found impacted by combined sewer overflows (CSO) through an observed increase in diversity from the sewer to the hyporheic sediments. These changes appeared driven by direct transfers of bacterial contaminants from wastewaters but also by organic inputs favoring previously undetectable bacterial groups among sediments. These NGS datasets appeared more sensitive at tracking community changes than MST markers. The human-specific MST marker HF183 was strictly detected among CSO-impacted surface waters and not river bed sediments. The ruminant-specific DNA marker was more broadly distributed but intense bovine pollution was required to detect transfers from surface water to benthic and hyporheic sediments. Some OTU showed distribution patterns in line with these MST datasets such as those allocated to the Aeromonas, Acinetobacter, and Pseudomonas. Fecal indicators (Escherichia coli and total thermotolerant coliforms) were detected all over the river course but their concentrations were not correlated with MST ones. Overall, MST and NGS datasets suggested a poor colonization of river sediments by bovine and sewer bacterial contaminants. No environmental outbreak of these bacterial contaminants was dete

Rivers are often challenged by fecal contaminations. The barrier effect of sediments against fecal bacteria was investigated through the use of a microbial source tracking (MST) toolbox, and by Next Generation Sequencing (NGS) of V5-V6 16S rRNA gene (rrs) sequences. Non-metric multi-dimensional scaling analysis of V5-V6 16S rRNA gene sequences differentiated bacteriomes according to their compartment of origin i.e., surface water against benthic and hyporheic sediments. Classification of these reads showed the most prevalent operating taxonomic units (OTU) to be allocated to Flavobacterium and Aquabacterium. Relative numbers of Gaiella, Haliangium, and Thermoleophilum OTU matched the observed differentiation of bacteriomes according to river compartments. OTU patterns were found impacted by combined sewer overflows (CSO) through an observed increase in diversity from the sewer to the hyporheic sediments. These changes appeared driven by direct transfers of bacterial contaminants from wastewaters but also by organic inputs favoring previously undetectable bacterial groups among sediments. These NGS datasets appeared more sensitive at tracking community changes than MST markers. The human-specific MST marker HF183 was strictly detected among CSO-impacted surface waters and not river bed sediments. The ruminant-specific DNA marker was more broadly distributed but intense bovine pollution was required to detect transfers from surface water to benthic and hyporheic sediments. Some OTU showed distribution patterns in line with these MST datasets such as those allocated to the Aeromonas, Acinetobacter, and Pseudomonas. Fecal indicators (Escherichia coli and total thermotolerant coliforms) were detected all over the river course but their concentrations were not correlated with MST ones. Overall, MST and NGS datasets suggested a poor colonization of river sediments by bovine and sewer bacterial contaminants. No environmental outbreak of these bacterial contaminants was dete

The aim of the study was to investigate the effect of brushing prior to scalding on reducing the E. coli and Enterobacteriaceae concentrations on carcasses. Three visits were arranged to a commercial slaughterhouse in which carcasses were cleaned in a separate line. Ten batches were sampled to compare the E. coli and Enterobacteriaceae concentrations on carcasses before and after a stand-alone brushing unit. Per batch, 8 carcasses before and 8 after brushing were sampled by the whole-carcass rinse method. Furthermore, the dry matter content and the pH were determined in these samples, as these parameters indirectly (dry matter) or directly (pH) influence the scalding lethality. Results revealed a small but statistically significant reduction (P < 0.001) in E. coli and Enterobacteriaceae concentrations on the brushed carcasses. The concentrations on whole carcasses were reduced on average by 0.3 log for both E. coli and Enterobacteriaceae. Rinse samples from treated carcasses had significantly less dry matter on average by 2.5 g (P < 0.001) and significantly higher pH by 0.08 units (P < 0.001). Although these differences are statistically significant, they might have rather low biological relevance; thus, further optimization of brushes is needed for more relevant results. This study confirms that brushing reduces bacterial concentrations on carcasses, which may be increased potentially by enlarging the brushed surface of the carcass. Further in-line investigations are needed to observe the effect of brushing on bacterial concentrations in scalding water and on carcasses after scalding and at the end of processing.

Zbog rasprostranjenosti steroidnih jedinjenja u ţivotnoj sredini i potencijalnih neţeljenih efekata, interesovanje javnosti za prisustvo steroida u svim segmentima ţivotne sredine je u stalnom porastu. Naime, steroidni hormoni i steroli, iako prisutni u niskim koncentracijama, mogu izazvati niz funkcionalnih poremećaja kod čoveka i ţivotinja. Pored toga, danas je trend u svetu primena hemijskih markera, poput humanih/ţivotinjskih i biljnih sterola, za utvrĎivanje izvora zagaĎenja ţivotne sredine. Većina razvijenih analitičkih metoda za odreĎivanje tragova steroidnih jedinjenja je usmerena na specifičnu klasu steroida. U literaturi je zabeleţen veoma mali broj metoda za istovremeno odreĎivanje steroidnih hormona i sterola, a sve postojeće metode zasnovane su na primeni gasne hromatografije u sprezi sa masenom spektrometrijom. Zbog izvesnih ograničenja metode gasne hromatografije-masene spektrometrije, postoji potreba za razvojem metode tečne hromatografije u sprezi sa masenom spektrometrijom koja bi omogućila odreĎivanje tragova steroidnih jedinjenja u uzorcima iz ţivotne sredine..., Public concern over presence of steroid compounds in all environmental compartments has been constantly growing due to their widespread occurrence and potential adverse effects. Namely, steroid hormones and sterols can cause a number of functional disorders in humans and animals, even at trace levels. In addition, current worldwide trend is the application of chemical markers, as human/animal and plant sterols, for identification of sources of environmental contamination. Majority of the developed analytical methods for trace determination of steroid compounds are focused on a specific class of steroids. A limited number of methods for simultaneous determination of steroid hormones and sterols are reported in the literature, and all of them are based on the use of gas chromatography coupled to mass spectrometry. Due to some limitations of gas chromatography-mass spectrometry method, there is a need for development of liquid chromatography-mass spectrometry method for trace determination of steroid compounds in environmental samples...

Although little evidence existed to support that view, European countries and in particular France, have regarded echinoderms, including sea urchins, as low risk in terms of feacal contamination. It is hypothesized that the sea urchins mode of feeding, which is based on grazing and differs from bivalve molluscs, would prevent it from concentrating high levels of Escherichia coli. Here, we monitored E. coli levels in sea urchins (Paracentrotus lividus) and in filter-feeder mussels (Mytillus galloprovincialis), collected concurrently from the same natural area over a 1-year period to verify this assumption. Sea urchins were collected on the seafloor, whereas mussels were collected from the water column at a depth of 4 m. Our results showed heavy bacterial loading of sea urchins in a natural growing environment. Moreover, we highlighted that E. coli contamination of sea urchins could, in certain conditions, be higher than those detected in filter-feeding mussels collected at the same location. Finally, the results showed a significant correlation between rainfall and E. coli concentrations in sea urchins, suggesting that the bacterial safety of sea urchin could be linked to the quality of the surrounding water.

Although little evidence existed to support that view, European countries and in particular France, have regarded echinoderms, including sea urchins, as low risk in terms of feacal contamination. It is hypothesized that the sea urchins mode of feeding, which is based on grazing and differs from bivalve molluscs, would prevent it from concentrating high levels of Escherichia coli. Here, we monitored E. coli levels in sea urchins (Paracentrotus lividus) and in filter-feeder mussels (Mytillus galloprovincialis), collected concurrently from the same natural area over a 1-year period to verify this assumption. Sea urchins were collected on the seafloor, whereas mussels were collected from the water column at a depth of 4 m. Our results showed heavy bacterial loading of sea urchins in a natural growing environment. Moreover, we highlighted that E. coli contamination of sea urchins could, in certain conditions, be higher than those detected in filter-feeding mussels collected at the same location. Finally, the results showed a significant correlation between rainfall and E. coli concentrations in sea urchins, suggesting that the bacterial safety of sea urchin could be linked to the quality of the surrounding water.

Poor sanitation infrastructure in rural areas can often lead to high levels of fecal contamination in local waterbodies and subsequent exposure to waterborne disease can occur. Although standard water quality measures such as quantification of E. coli can reveal relative concentrations of fecal contamination, they do not pinpoint the sources of such contamination. Source assessment in rural areas affected by untreated household waste might be improved with the human-specific, microbial source tracking marker HF183. This study attempted to quantify HF183 in two particular Appalachia streams with known discharges of untreated household waste. Water samples were taken above and at multiple points below these discharges on 29 occasions between August 2012 and April 2016, and tested for both HF183 and E. coli. HF183 was detected consistently in one of the study streams, though the concentrations were generally much lower than those previously reported in raw sewage; in the other watershed, HF183 was never detected. Further analysis via a multiple linear regression model showed a positive correlation between the level of E. coli and the proximity and number of known waste discharge points upstream from each sampling site. Primary conclusions of this study include: 1) HF183 is not always detected, even in watersheds with known sources of human fecal contamination, 2) it may be a useful water quality assessment tool where such contamination is suspected, particularly in cases where contaminant source allocation is necessary for setting mitigation priorities.

Although little evidence existed to support that view, European countries and in particular France, have regarded echinoderms, including sea urchins, as low risk in terms of feacal contamination. It is hypothesized that the sea urchins mode of feeding, which is based on grazing and differs from bivalve molluscs, would prevent it from concentrating high levels of Escherichia coli. Here, we monitored E. coli levels in sea urchins (Paracentrotus lividus) and in filter-feeder mussels (Mytillus galloprovincialis), collected concurrently from the same natural area over a 1-year period to verify this assumption. Sea urchins were collected on the seafloor, whereas mussels were collected from the water column at a depth of 4 m. Our results showed heavy bacterial loading of sea urchins in a natural growing environment. Moreover, we highlighted that E. coli contamination of sea urchins could, in certain conditions, be higher than those detected in filter-feeding mussels collected at the same location. Finally, the results showed a significant correlation between rainfall and E. coli concentrations in sea urchins, suggesting that the bacterial safety of sea urchin could be linked to the quality of the surrounding water.

The aim of the study was to investigate the effect of brushing prior to scalding on reducing the E. coli and Enterobacteriaceae concentrations on carcasses. Three visits were arranged to a commercial slaughterhouse in which carcasses were cleaned in a separate line. Ten batches were sampled to compare the E. coli and Enterobacteriaceae concentrations on carcasses before and after a stand-alone brushing unit. Per batch, 8 carcasses before and 8 after brushing were sampled by the whole-carcass rinse method. Furthermore, the dry matter content and the pH were determined in these samples, as these parameters indirectly (dry matter) or directly (pH) influence the scalding lethality. Results revealed a small but statistically significant reduction (P < 0.001) in E. coli and Enterobacteriaceae concentrations on the brushed carcasses. The concentrations on whole carcasses were reduced on average by 0.3 log for both E. coli and Enterobacteriaceae. Rinse samples from treated carcasses had significantly less dry matter on average by 2.5 g (P < 0.001) and significantly higher pH by 0.08 units (P < 0.001). Although these differences are statistically significant, they might have rather low biological relevance; thus, further optimization of brushes is needed for more relevant results. This study confirms that brushing reduces bacterial concentrations on carcasses, which may be increased potentially by enlarging the brushed surface of the carcass. Further inline investigations are needed to observe the effect of brushing on bacterial concentrations in scalding water and on carcasses after scalding and at the end of processing.

Carvalho V.A., Cardoso Filho F.C., Rios F.P.B., Lima C.E., Muratori M.C.S. & Keller K.M. [Coliforms and Salmonella spp. in ground meat comercialized at Teresina, PI.] Coliformes e Salmonella spp. em carne moída comercializada em Teresina, PI. Revista Brasileira de Medicina Veterinária, 33(1):32-36. 2011. Departamento de Morfofisiologia Veterinária, Universidade Federal do Piauí, Campus Universitário Ministro Petrônio Portella, Teresina, 64049-550, PI, Brasil. E-mail: chrismuratori@uol.com.br The ground meat stands out among the meat products because it is well accepted by the consumers, for its convenience and affordability. The grind of the meat may favor the contamination and the multiplication of a greater quantity of microorganisms, due to the increased of the contact surface, being the food most exposed to contamination. This study investigated the hygienic and sanitary conditions in ground meat sold in Teresina, PI. To analyze the quality of ground meat, 30 samples were collected from six shops located in different geographical areas of Teresina city, PI. The method used was of the most probable number (MPN) for coliforms at 35 and 45o C and the research of Salmonella spp. There were variations among markets for coliforms enumeration at 35ºC. It was checked that all samples were contaminated with coliforms at 35o C, with values ranging from 1.36 to 3.38 MPN/ g in log10 (x+1). The sampling places “B” and “F” had the lowest level of contamination. The six shops studied did not differ in coliforms at 45ºC. It was observed that 93% of ground meat samples were contaminated by these bacteria, ranging from 0.30 to 3.08 MPN / g in log10 (x+1). In just one settlement was possible to isolate Salmonella spp. from one (20.0%) sample among five collected in the sampling place “B”, representing a danger to the public health. The hygienic and sanitary conditions of ground beef sold in Teresina are variable, it is possible to isolate coliforms at 35o C and 45o C, A carne moída destaca-se entre os produtos cárneos, por ser bem aceita pelo consumidor, devido sua praticidade e por apresentar preços acessíveis. A moagem da carne pode favorecer a contaminação e a multiplicação de uma maior quantidade de microrganismos, devido ao aumento da superfície de contato, ficando o alimento mais exposto à contaminação. Este trabalho verificou as condições higiênico-sanitárias em carne moída comercializada em Teresina, PI. Para analisar a qualidade da carne moída, foram coletadas 30 amostras provenientes de seis estabelecimentos comerciais localizados em diferentes zonas geográficas da cidade de Teresina, PI. Foi utilizado o método do número mais prová- vel (NMP) para coliformes a 35o e a 45o C e pesquisa de lho verificou as condições higiênico-sanitárias em carne moída comercializada em Teresina, PI. Para analisar a qualidade da carne moída, foram coletadas 30 amostras provenientes de seis estabelecimentos comerciais localizados em diferentes zonas geográficas da cidade de Teresina, PI. Foi utilizado o método do número mais prová- vel (NMP) para coliformes a 35o e a 45o C e pesquisa de Salmonella spp. Houve variações entre mercados para enumeração de coliformes a 35 o C. Pode-se verificar que todas as amostras estavam contaminadas com coliformes a 35o C, com valores que variaram entre 1,36 a 3,38NMP/ g em log10 (x+1). Os locais de coleta “B” e “F” apresentaram os menores índices de contaminação. Os seis estabelecimentos estudados não diferiram quanto aos coliformes a 45o C. Foi possível observar que 93 % das amostras de carne moída apresentaram contaminação destas bactérias, com variação entre 0,30 a 3,08 NMP/ g em log10 (x+1). Em apenas um estabelecimento foi possí- vel isolar Salmonella spp., em uma (20,0%) amostra das cinco coletadas no local de coleta “B”, representando um perigo à saúde pública. As condições higiênico-sanitárias da carne moída comercializada em Teresina são variá- veis, sendo possível isolar coliformes a 35

Carvalho V.A., Cardoso Filho F.C., Rios F.P.B., Lima C.E., Muratori M.C.S. & Keller K.M. [Coliforms and Salmonella spp. in ground meat comercialized at Teresina, PI.] Coliformes e Salmonella spp. em carne moída comercializada em Teresina, PI. Revista Brasileira de Medicina Veterinária, 33(1):32-36. 2011. Departamento de Morfofisiologia Veterinária, Universidade Federal do Piauí, Campus Universitário Ministro Petrônio Portella, Teresina, 64049-550, PI, Brasil. E-mail: chrismuratori@uol.com.br The ground meat stands out among the meat products because it is well accepted by the consumers, for its convenience and affordability. The grind of the meat may favor the contamination and the multiplication of a greater quantity of microorganisms, due to the increased of the contact surface, being the food most exposed to contamination. This study investigated the hygienic and sanitary conditions in ground meat sold in Teresina, PI. To analyze the quality of ground meat, 30 samples were collected from six shops located in different geographical areas of Teresina city, PI. The method used was of the most probable number (MPN) for coliforms at 35 and 45o C and the research of Salmonella spp. There were variations among markets for coliforms enumeration at 35ºC. It was checked that all samples were contaminated with coliforms at 35o C, with values ranging from 1.36 to 3.38 MPN/ g in log10 (x+1). The sampling places “B” and “F” had the lowest level of contamination. The six shops studied did not differ in coliforms at 45ºC. It was observed that 93% of ground meat samples were contaminated by these bacteria, ranging from 0.30 to 3.08 MPN / g in log10 (x+1). In just one settlement was possible to isolate Salmonella spp. from one (20.0%) sample among five collected in the sampling place “B”, representing a danger to the public health. The hygienic and sanitary conditions of ground beef sold in Teresina are variable, it is possible to isolate coliforms at 35o C and 45o C, A carne moída destaca-se entre os produtos cárneos, por ser bem aceita pelo consumidor, devido sua praticidade e por apresentar preços acessíveis. A moagem da carne pode favorecer a contaminação e a multiplicação de uma maior quantidade de microrganismos, devido ao aumento da superfície de contato, ficando o alimento mais exposto à contaminação. Este trabalho verificou as condições higiênico-sanitárias em carne moída comercializada em Teresina, PI. Para analisar a qualidade da carne moída, foram coletadas 30 amostras provenientes de seis estabelecimentos comerciais localizados em diferentes zonas geográficas da cidade de Teresina, PI. Foi utilizado o método do número mais prová- vel (NMP) para coliformes a 35o e a 45o C e pesquisa de lho verificou as condições higiênico-sanitárias em carne moída comercializada em Teresina, PI. Para analisar a qualidade da carne moída, foram coletadas 30 amostras provenientes de seis estabelecimentos comerciais localizados em diferentes zonas geográficas da cidade de Teresina, PI. Foi utilizado o método do número mais prová- vel (NMP) para coliformes a 35o e a 45o C e pesquisa de Salmonella spp. Houve variações entre mercados para enumeração de coliformes a 35 o C. Pode-se verificar que todas as amostras estavam contaminadas com coliformes a 35o C, com valores que variaram entre 1,36 a 3,38NMP/ g em log10 (x+1). Os locais de coleta “B” e “F” apresentaram os menores índices de contaminação. Os seis estabelecimentos estudados não diferiram quanto aos coliformes a 45o C. Foi possível observar que 93 % das amostras de carne moída apresentaram contaminação destas bactérias, com variação entre 0,30 a 3,08 NMP/ g em log10 (x+1). Em apenas um estabelecimento foi possí- vel isolar Salmonella spp., em uma (20,0%) amostra das cinco coletadas no local de coleta “B”, representando um perigo à saúde pública. As condições higiênico-sanitárias da carne moída comercializada em Teresina são variá- veis, sendo possível isolar coliformes a 35

This research analyzed the effect of fecal contamination caused by sewage, and its relationship with the presence of enteropathogenic strains of Escherichia coli in the feces of South American sea lions (Otaria flavescens) from Iquique Bay and surrounding waters. The E. coli strains isolated from the water column of the bay and sewage outlet, showed the presence of the gene eae. In the strains isolated from the feces of both sea lion colonies no presence of virulent diarrheagenic genes was detected. The genotyping of strains resulted in clusters according to their origin and showed separation of the samples of E. coli population of the colonies of sea lions and those of the strains isolated from the column water of Iquique Bay.

Introduction : "The occurrence of pathogenic microorganisms in seawater or in shellfish could exist anytime sewage from human or animal origin would be discharged to the coast" (Metcalf, 1982). According to the diseases occurring in the human population or in animals, pathogens might be present in recreational waters or in shellfish. Thus, the presence of human enteric viruses (norovirus, astrovirus, rotavirus, hepatitisAvirus (HAV)) and pathogenic bacteria (Salmonella, Listeria monocytogenes, Shiga-toxin-producing Escherichia coli (STEC), Vibrio cholerae, Vibrio parahaemolyticus, etc.) has been reported in coastal areas for a long time (Colwell, 1978; Metcalf, 1978; Melnick et al., 1979; Grimes, 1991; Bosch et al., 2001;Kong et al., 2002). These microorganisms have been implicated in gastrointestinal and respiratory illnesses and other infections (skin, eyes, etc.), (Griffin et al., 2003). Using risk-assessment models for viruses, maximum risks were estimated to be 1.3 infections per 100 swimmers (Colwell et al., 1996). To evaluate the risk due to the presence of these pathogens in the environment, certain criteria have to be determined. Among them, the infectious dosewould be of a greatest importance (Table 14.1). Even if the infectious dose vary with the strains, the age of the patient, or other parameters, some pathogens are highly dangerous for men even at low concentrations (HAV, E. coli O157:H7, V. cholerae), whereas others have to be ingested in high concentrations to be harmful (V. parahaemolyticus) or are highly infectious but not very dangerous (norovirus). Thus, for some pathogens, a low contamination in seafood, for example, is not acceptable, based on risk-assessment models (Colwell et al., 1996). Among bacteria, the Vibrio family plays an important role in infections, waterborne or seafood diseases, especially in countries surrounded by warm marine waters. Toxigenic V. cholerae O1 and O139 are the causative agents of cholera in developing countries, w

Introduction : "The occurrence of pathogenic microorganisms in seawater or in shellfish could exist anytime sewage from human or animal origin would be discharged to the coast" (Metcalf, 1982). According to the diseases occurring in the human population or in animals, pathogens might be present in recreational waters or in shellfish. Thus, the presence of human enteric viruses (norovirus, astrovirus, rotavirus, hepatitisAvirus (HAV)) and pathogenic bacteria (Salmonella, Listeria monocytogenes, Shiga-toxin-producing Escherichia coli (STEC), Vibrio cholerae, Vibrio parahaemolyticus, etc.) has been reported in coastal areas for a long time (Colwell, 1978; Metcalf, 1978; Melnick et al., 1979; Grimes, 1991; Bosch et al., 2001;Kong et al., 2002). These microorganisms have been implicated in gastrointestinal and respiratory illnesses and other infections (skin, eyes, etc.), (Griffin et al., 2003). Using risk-assessment models for viruses, maximum risks were estimated to be 1.3 infections per 100 swimmers (Colwell et al., 1996). To evaluate the risk due to the presence of these pathogens in the environment, certain criteria have to be determined. Among them, the infectious dosewould be of a greatest importance (Table 14.1). Even if the infectious dose vary with the strains, the age of the patient, or other parameters, some pathogens are highly dangerous for men even at low concentrations (HAV, E. coli O157:H7, V. cholerae), whereas others have to be ingested in high concentrations to be harmful (V. parahaemolyticus) or are highly infectious but not very dangerous (norovirus). Thus, for some pathogens, a low contamination in seafood, for example, is not acceptable, based on risk-assessment models (Colwell et al., 1996). Among bacteria, the Vibrio family plays an important role in infections, waterborne or seafood diseases, especially in countries surrounded by warm marine waters. Toxigenic V. cholerae O1 and O139 are the causative agents of cholera in developing countries, w

Introduction : "The occurrence of pathogenic microorganisms in seawater or in shellfish could exist anytime sewage from human or animal origin would be discharged to the coast" (Metcalf, 1982). According to the diseases occurring in the human population or in animals, pathogens might be present in recreational waters or in shellfish. Thus, the presence of human enteric viruses (norovirus, astrovirus, rotavirus, hepatitisAvirus (HAV)) and pathogenic bacteria (Salmonella, Listeria monocytogenes, Shiga-toxin-producing Escherichia coli (STEC), Vibrio cholerae, Vibrio parahaemolyticus, etc.) has been reported in coastal areas for a long time (Colwell, 1978; Metcalf, 1978; Melnick et al., 1979; Grimes, 1991; Bosch et al., 2001;Kong et al., 2002). These microorganisms have been implicated in gastrointestinal and respiratory illnesses and other infections (skin, eyes, etc.), (Griffin et al., 2003). Using risk-assessment models for viruses, maximum risks were estimated to be 1.3 infections per 100 swimmers (Colwell et al., 1996). To evaluate the risk due to the presence of these pathogens in the environment, certain criteria have to be determined. Among them, the infectious dosewould be of a greatest importance (Table 14.1). Even if the infectious dose vary with the strains, the age of the patient, or other parameters, some pathogens are highly dangerous for men even at low concentrations (HAV, E. coli O157:H7, V. cholerae), whereas others have to be ingested in high concentrations to be harmful (V. parahaemolyticus) or are highly infectious but not very dangerous (norovirus). Thus, for some pathogens, a low contamination in seafood, for example, is not acceptable, based on risk-assessment models (Colwell et al., 1996). Among bacteria, the Vibrio family plays an important role in infections, waterborne or seafood diseases, especially in countries surrounded by warm marine waters. Toxigenic V. cholerae O1 and O139 are the causative agents of cholera in developing countries, w

Introduction : "The occurrence of pathogenic microorganisms in seawater or in shellfish could exist anytime sewage from human or animal origin would be discharged to the coast" (Metcalf, 1982). According to the diseases occurring in the human population or in animals, pathogens might be present in recreational waters or in shellfish. Thus, the presence of human enteric viruses (norovirus, astrovirus, rotavirus, hepatitisAvirus (HAV)) and pathogenic bacteria (Salmonella, Listeria monocytogenes, Shiga-toxin-producing Escherichia coli (STEC), Vibrio cholerae, Vibrio parahaemolyticus, etc.) has been reported in coastal areas for a long time (Colwell, 1978; Metcalf, 1978; Melnick et al., 1979; Grimes, 1991; Bosch et al., 2001;Kong et al., 2002). These microorganisms have been implicated in gastrointestinal and respiratory illnesses and other infections (skin, eyes, etc.), (Griffin et al., 2003). Using risk-assessment models for viruses, maximum risks were estimated to be 1.3 infections per 100 swimmers (Colwell et al., 1996). To evaluate the risk due to the presence of these pathogens in the environment, certain criteria have to be determined. Among them, the infectious dosewould be of a greatest importance (Table 14.1). Even if the infectious dose vary with the strains, the age of the patient, or other parameters, some pathogens are highly dangerous for men even at low concentrations (HAV, E. coli O157:H7, V. cholerae), whereas others have to be ingested in high concentrations to be harmful (V. parahaemolyticus) or are highly infectious but not very dangerous (norovirus). Thus, for some pathogens, a low contamination in seafood, for example, is not acceptable, based on risk-assessment models (Colwell et al., 1996). Among bacteria, the Vibrio family plays an important role in infections, waterborne or seafood diseases, especially in countries surrounded by warm marine waters. Toxigenic V. cholerae O1 and O139 are the causative agents of cholera in developing countries, w