Yip Pui Ying., Thesis submitted in: November 2004., Thesis (M.Phil.)--Chinese University of Hong Kong, 2005., Includes bibliographical references (leaves 147-184)., s in English and Chinese., p.i, 摘要 --- p.iii, Acknowledgment --- p.v, Abbreviations --- p.vii, Table of contents --- p.viii, List of Figures --- p.xii, List of Tables --- p.xvii, Chapter Chapter 1 --- Introduction --- p.1, Chapter 1.1. --- The importance of characterization of Chinese medicinal materials and the development of Chinese medicine in Hong Kong --- p.1, Chapter 1.2. --- Methods for characterization of Chinese medicinal materials --- p.5, Chapter 1.3. --- Molecular characterization of Chinese medicinal materials --- p.8, Chapter 1.3.1. --- DNA sequencing --- p.9, Chapter 1.3.2. --- DNA fingerprinting --- p.14, Chapter 1.3.3. --- Nucleic acid hybridization --- p.19, Chapter 1.4. --- Objectives --- p.20, Chapter Chapter 2 --- Characterization of Plant and Fungal Materials by rDNA ITS Sequence Analysis --- p.22, Chapter 2.1. --- Introduction --- p.22, Chapter 2.2. --- Materials and Methods --- p.22, Chapter 2.2.1. --- Chinese medicinal materials used in this study --- p.22, Chapter 2.2.1.1. --- Plants and fungi for interspecific ITS study --- p.22, Chapter 2.2.1.2. --- Plant for intraspecific ITS study and locality study --- p.33, Chapter 2.2.2. --- Extraction of total DNA --- p.35, Chapter 2.2.3. --- PCR amplification of ITS1 and ITS2 regions of rRNA gene --- p.35, Chapter 2.2.4. --- Purification of PCR products --- p.38, Chapter 2.2.5. --- Cloning using pCR-Script´ёØ Amp SK(+) Cloning Kit --- p.38, Chapter 2.2.5.1. --- Polishing --- p.38, Chapter 2.2.5.2. --- Ligation of inserts into pCR-Script´ёØ Amp SK(+) cloning vector --- p.38, Chapter 2.2.5.3. --- Transformation --- p.40, Chapter 2.2.5.4. --- PCR screening of white colonies --- p.40, Chapter 2.2.5.5. --- Purification of PCR screening products --- p.41, Chapter 2.2.6. --- Sequencing of ITS regions --- p.41, Chapter 2.2.6.1. --- Cycle sequencing reaction --- p.41, Chapter 2.2.6.2. --- Purification of sequencing extension products --- p.41, Chapter 2.2.6.3. --- Electrophoresis by genetic analyzer --- p.42, Chapter 2.2.7. --- Sequence analysis and alignment --- p.42, Chapter 2.3. --- Results --- p.42, Chapter 2.3.1. --- Extraction of total DNA --- p.42, Chapter 2.3.2. --- PCR amplification of ITS1 and ITS2 regions of rRNA gene --- p.44, Chapter 2.3.2.1. --- Interspecific ITS study --- p.44, Chapter 2.3.2.2. --- Intraspecific ITS study --- p.46, Chapter 2.3.3. --- Sequence analysis and alignment --- p.47, Chapter 2.3.3.1. --- Interspecific ITS study --- p.47, Chapter 2.3.3.2. --- Intraspecific ITS study --- p.56, Chapter 2.4. --- Discussions --- p.60, Chapter 2.4.1. --- rDNA regions used for studying Chinese medicinal materials --- p.60, Chapter 2.4.2. --- The results agreed with previously published works --- p.60, Chapter 2.4.3. --- Explanation of interspecific results within the Ganoderma genus --- p.60, Chapter 2.4.4. --- Implications from interspecific comparisons --- p.60, Chapter 2.4.5. --- Implications from intraspecific comparisons --- p.61, Chapter Chapter 3 --- .Characterization of Astragalus membranaceus by DNA Fingerprinting, Chapter 3.1 --- Introduction --- p.62, Chapter 3.2 --- Materials and Methods --- p.62, Chapter 3.2.1 --- Extraction of total DNA --- p.62, Chapter 3.2.2 --- Generation and detection of DNA fingerprints by AP-PCR --- p.63, Chapter 3.2.3 --- Analysis of DNA fingerprints --- p.63, Chapter 3.3 --- Results --- p.63, Chapter 3.3.1 --- Generation of DNA fingerprints by AP-PCR --- p.63, Chapter 3.3.2 --- Fingerprint analysis --- p.69, Chapter 3.4 --- Discussion --- p.85, Chapter 3.4.1 --- RP-PCR has been used on Chinese medicinal materials --- p.85, Chapter 3.4.2 --- AP-PCR used instead of RAPD --- p.85, Chapter 3.4.3 --- Reproducibility and amount of bands --- p.86, Chapter 3.4.4 --- Alternatives of electrophoresis process --- p.88, Chapter 3.4.5 --- Explanation of results --- p.88, Chapter 3.4.6 --- Distinguishing Neimengu and Shanxi samples --- p.89, Chapter 3.4.7 --- Further studies --- p.90, Chapter Chapter 4 --- Characterization of Plant and Fungal Materials by DNA-DNA Hybridization on Microarrays --- p.91, Chapter 4.1 --- Introduction --- p.91, Chapter 4.2 --- Materials and Methods --- p.92, Chapter 4.2.1 --- Samples for microarray study --- p.92, Chapter 4.2.2 --- Extraction of total DNA --- p.95, Chapter 4.2.3 --- Amplification and sequencing of ITS 1 region of rRNA gene --- p.95, Chapter 4.2.4 --- Preparation of labeled probe --- p.95, Chapter 4.2.5 --- Amplification of ITS1 fragments --- p.97, Chapter 4.2.6 --- Preparation of slides --- p.103, Chapter 4.2.7 --- Hybridization and washing --- p.104, Chapter 4.2.8 --- Scanning and data analysis --- p.105, Chapter 4.3 --- Results --- p.105, Chapter 4.3.1 --- DNA extraction --- p.105, Chapter 4.3.2 --- Amplification and sequencing of ITS1 region of rRNA gene --- p.107, Chapter 4.3.3 --- Preparation of labeled probe and amplification of ITS1 fragments… --- p.112, Chapter 4.3.4 --- Preparation of slides --- p.112, Chapter 4.3.5 --- Scanning and data analysis --- p.116, Chapter 4.4 --- Discussion --- p.134, Chapter 4.4.1 --- Implications --- p.134, Chapter 4.4.2 --- Applying the findings --- p.134, Chapter 4.4.3 --- Ways to maximize specificity --- p.137, Chapter 4.4.4 --- Optimisation --- p.138, Chapter 4.4.5 --- Microarray may be more advantageous over sequencing --- p.138, Chapter Chapter Five --- General Discussion and Summary --- p.140, Chapter 5.1. --- Objectives of this study --- p.140, Chapter 5.2. --- rDNA ITS sequencing --- p.140, Chapter 5.2.1. --- Description of the approach and summary of the results --- p.140, Chapter 5.2.2. --- Implications from the results --- p.140, Chapter 5.2.3. --- Advantages and limitations of DNA sequencing --- p.141, Chapter 5.3. --- AP-PCR fingerprinting --- p.141, Chapter 5.3.1. --- Description of the approach and summary of the results --- p.141, Chapter 5.3.2. --- Advantages and limitations of DNA fingerprinting --- p.142, Chapter 5.4. --- DNA-DNA hybridization on microarrays --- p.143, Chapter 5.4.1. --- Description of the approach and summary of the results --- p.143, Chapter 5.4.2. --- Implications from the results --- p.143, Chapter 5.4.3. --- Advantages and limitations of DNA hybridization on microarrays. --- p.144, Chapter 5.5. --- Overall summary --- p.144, Chapter 5.6. --- Future studies --- p.146, References --- p.147, Appendix --- p.185, http://library.cuhk.edu.hk/record=b5896535, Use of this resource is governed by the terms and conditions of the Creative Commons “Attribution-NonCommercial-NoDerivatives 4.0 International” License (http://creativecommons.org/licenses/by-nc-nd/4.0/)