In this research, an elastic cylinder that utilized vortex-induced vibration (VIV) was applied to improve convective heat transfer rates by disrupting the thermal boundary layer. Rigid and elastic cylinders were placed across a fluid channel. Vortex shedding around the cylinder led to the periodic vibration of the cylinder. As a result, the flow-structure interaction (FSI) increased the disruption of the thermal boundary layer, and therefore, improved the mixing process at the boundary. This study aims to improve convective heat transfer rate by increasing the perturbation in the fluid flow. A three-dimensional numerical model was constructed to simulate the effects of different flow channel geometries, including a channel with a stationary rigid cylinder, a channel with a elastic cylinder, a channel with two elastic cylinders of the same diameter, and a channel with two elastic cylinders of different diameters. Through the numerical simulations, the channel maximum wall temperature was found to be reduced by approximately 10% with a stationary cylinder and by around 17% when introducing an elastic cylinder in the channel compared with the channel without the cylinder. Channels with two-cylinder conditions were also studied in the current research. The additional cylinder with the same diameter in the fluid channel only reduced the surface wall temperature by 3% compared to the channel without any cylinders because the volume of the second cylinder could occupy some space, and therefore, reduce the effect of the convective heat transfer. By reducing the diameter of the second cylinder by 25% increased the effect of the convection heat transfer and reduced the maximum wall temperature by around 15%. Compared to the channel with no cylinder, the introduction of cylinders into the channel flow was found to increase the average Nusselt number by 55% with the insertion of a stationary rigid cylinder, by 85% with the insertion of an elastic cylinder, by 58% with the insertion of two cylinders of the same diameter, and by approximately 70% with the insertion of two cylinders of different diameters (the second cylinder having the smaller diameter). Furthermore, it was also found that the maximum local Nusselt number could be enhanced by around 200%-400% at the entrance of the fluid channel by using the elastic cylinders compared to the channel without cylinders.