The philosophical arguments about whether and under what conditions scientific research is, or should be, value-free have polarized academic disciplines for decades. In this project, I hope to make a contribution to easing this tension by, first, reviewing feminist critiques of scientific research with respect to the roles of politics and values. Further, as an example of how such critiques need not fundamentally undermine what is colloquially understood as scientific research, I apply insights from these critiques to empirically study scientific explanations within a sub field within Psychology: gender differences in spatial reasoning. Finally, I use the results of this analysis as an example and starting point for developing a conceptual framework for ethically incorporating the role of values into scientific research by specifying and justifying judgments that are made throughout the research process.