1. Molecular identification of some weeds associated with wheat crop in Najaf.
- Author
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Al-Shebly, Hayder Azeez Ali, Al-Haddad, Ameer Sahib Abd-Ali, Ali Alshawi, Haider A., and Al-Abbasi, Ghalib Bhew Abud
- Subjects
WILD oat ,PHRAGMITES australis ,CROPS ,WHEAT ,MILK thistle ,PHRAGMITES - Abstract
This study identified the genetic polymorphisms of seven plant isolates (S2 to S8) and assessed their ribosomal sequence phylogenetic distribution. This study amplified one genetic locus covering part of the internal transcribed spacers (ITS1–ITS2) rRNA sequences. The amplified genetic locus PCR amplicons were sequenced directly. A comprehensive phylogenetic tree was then constructed in the observed variants for these plant sequences to show accurate phylogenetic distances and other relative sequences. Our sequencing reactions identified seven plant species: Silybum marianum, Raphanus raphanistrum, Melilotus indicus, Lolium rigidium, Lolium temulentum, Phragmites australis, and Avena fatua. G302A was the only ribosomal variation found in Lolium rigidum. The current comprehensive tree placed the investigated samples in seven phylogenetic clades. The phylogenetic tree showed that this ribosomal variation was minor within the identified clade, which included our S5 sample. Ribosomal sequences showed that Lolium rigidum and Lolium temulentum had close phylogenetic distances and high homology. Phragmites australis had the most diverse phylogenetic distribution of all samples. In the current tree, Silybum marianum, Raphanus raphanistrum, Melilotus indicus, Phragmites australis, and Avena fatua had diverse phylogenetic clades. In conclusion, the current tree served as an all-inclusive tool that ensured the correct identification of the tested samples of the researched plant. Therefore, the use of the PCR-sequencing approach in the samples that were analysed has produced evidence that corroborated the samples' identities and shown the pattern of their phylogenetic distribution. This kind of diversity that was seen for these plant species may imply that it is possible to use the existing ITS1-ITS2 rRNA sequences in the precise identification and discrimination of a broad range of additional plant sequences. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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