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Traditional weed management, such as tillage and irrigation, has led to an enhanced maintenance of wetland plant species in fallow paddy fields. Recent herbicide usage and improvements in irrigation and drainage systems however have caused habitat loss of these species, especially in fields on open lowlands. We conducted experiments in three fallow paddy fields situated on the alluvial Echigo Plain in central Japan with an aim to restore the habitat of native wetland plant species. The three experimental fields were managed under different irrigation regimes, (1) perennially flooded with water, (2) intermittent irrigation, and (3) temporary irrigation. Half the area of each experimental field was tilled before irrigation. Detrended correspondence analysis revealed obvious floristic differences between experimental and control fields with no irrigation. The proportion of wetland plant species in the experimental fields increased corresponding to the irrigation period, ranging 60-86%, and was relatively greater than that in control fields. In the experimental fields, differences in both tillage and irrigation affected the occurrence of plant species. Tillage restricted the occurrence of many non-wetland plant species, and had a positive effect on the establishment of several annual wetland plant species. In addition, a longer duration of irrigation is not necessarily suitable for the occurrence of all wetland plant species. We concluded that fallow paddy fields provide a possible habitat for the restoration of native wetland plant species through appropriate tillage and irrigation. [ABSTRACT FROM AUTHOR]