19 results on '"Zerp, S."'
Search Results
2. OC-0068 THE NAD+ DEPLETING AGENT APO866 ENHANCES CELL DEATH WHEN COMBINED WITH RADIATION
- Author
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Verheij, M., Zerp, S., Floot, B., Vens, C., and Van Triest, B.
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- 2012
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3. N-hexanoyl-sphingomyelin potentiates in vitro doxorubicin cytotoxicity by enhancing its cellular influx.
- Author
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Veldman, R. J., Zerp, S., van Blitterswijk, W. J., and Verheij, M.
- Subjects
- *
ANTINEOPLASTIC antibiotics , *DOXORUBICIN , *CELL membranes , *SPHINGOLIPIDS , *DRUG lipophilicity , *DRUG derivatives - Abstract
Anticancer drugs generally have intracellular targets, implicating transport over the plasma membrane. For amphiphilic agents, such as the anthracycline doxorubicin, this occurs by passive diffusion. We investigated whether exogenous membrane-permeable lipid analogues improve this drug influx. Combinations of drugs and lipid analogues were coadministered to cultured endothelial cells and various tumour cell lines, and subsequent drug accumulation in cells was quantified. We identified N-hexanoyl-sphingomyelin (SM) as a potent enhancer of drug uptake. Low micromolar amounts of this short-chain sphingolipid, being not toxic itself, enhanced the uptake of doxorubicin up to 300% and decreased its EC50 toxicity values seven- to 14-fold. N-hexanoyl SM acts at the level of the plasma membrane, but was found not incorporated in (isolated) lipid rafts, and artificial disruption or elimination of raft constituents did not affect its drug uptake-enhancing effect. Further, any mechanistic role of the endocytic machinery, membrane leakage or ABC-transporter-mediated efflux could be excluded. Finally, a correlation was established between the degree of drug lipophilicity, as defined by partitioning in a two-phase octanol-water system, and the susceptibility of the drug towards the uptake-enhancing effect of the sphingolipid. A clear optimum was found for amphiphilic drugs, such as doxorubicin, epirubicin and topotecan, indicating that N-hexanoyl-SM might act by modulating the average degree of plasma membrane lipophilicity, in turn facilitating transbilayer drug diffusion. The concept of short-chain sphingolipids as amphiphilic drug potentiators provides novel opportunities for improving drug delivery technologies.British Journal of Cancer (2004) 90, 917-925. doi:10.1038/sj.bjc.6601581 www.bjcancer.com [ABSTRACT FROM AUTHOR]
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- 2004
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4. 300 ORAL Lipid rafts as novel targets for anti-cancer therapy
- Author
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Verheij, M., van der Luit, A.H., Klarenbeek, J., Zerp, S., van Lummel, M., and van Blitterswijk, W.J.
- Published
- 2007
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5. 234 Gossypol, a small molecule inhibitor of BCL-2, increases radiation-induced cytotoxicity in human prostate and head and neck cancer cells
- Author
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Geldof, A., Kuipers, G., Sminia, P., Lafleur, M., Zerp, S., Yangs, D., Lippmann, M., Slotman, B., and Verheij, M.
- Published
- 2006
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6. 2645: Gossypol Activates the SAPK/JNK Pathway and Enhances Radiation-Induced Apoptosis
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Verheij, M., Zerp, S., Stoter, R., Kuipers, G., Geldof, A., Sminia, P., Yang, D., Lippman, M., Slotman, B., and Lafleur, V.
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- 2006
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7. Phosphoinositide phosphatase SHIP-1 regulates apoptosis induced by edelfosine, Fas ligation and DNA damage in mouse lymphoma cells.
- Author
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Alderliesten MC, Klarenbeek JB, van der Luit AH, van Lummel M, Jones DR, Zerp S, Divecha N, Verheij M, and van Blitterswijk WJ
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- Animals, Apoptosis drug effects, Cell Line, Tumor, DNA Damage, Down-Regulation, Extracellular Signal-Regulated MAP Kinases metabolism, Fas Ligand Protein metabolism, Inositol Polyphosphate 5-Phosphatases, Lymphoma pathology, Mice, Phosphatidylinositol Phosphates metabolism, Phosphatidylinositol-3,4,5-Trisphosphate 5-Phosphatases, Proto-Oncogene Proteins c-akt metabolism, Transferases (Other Substituted Phosphate Groups) metabolism, Phospholipid Ethers pharmacology, Phosphoric Monoester Hydrolases metabolism
- Abstract
S49 mouse lymphoma cells undergo apoptosis in response to the ALP (alkyl-lysophospholipid) edelfosine (1-O-octadecyl-2-O-methyl-rac-glycero-3-phosphocholine), FasL (Fas ligand) and DNA damage. S49 cells made resistant to ALP (S49(AR)) are defective in sphingomyelin synthesis and ALP uptake, and also have acquired resistance to FasL and DNA damage. However, these cells can be re-sensitized following prolonged culturing in the absence of ALP. The resistant cells show sustained ERK (extracellular-signal-regulated kinase)/Akt activity, consistent with enhanced survival signalling. In search of a common mediator of the observed cross-resistance, we found that S49(AR) cells lacked the PtdIns(3,4,5)P(3) phosphatase SHIP-1 [SH2 (Src homology 2)-domain-containing inositol phosphatase 1], a known regulator of the Akt survival pathway. Re-sensitization of the S49(AR) cells restored SHIP-1 expression as well as phosphoinositide and sphingomyelin levels. Knockdown of SHIP-1 mimicked the S49(AR) phenotype in terms of apoptosis cross-resistance, sphingomyelin deficiency and altered phosphoinositide levels. Collectively, the results of the present study suggest that SHIP-1 collaborates with sphingomyelin synthase to regulate lymphoma cell death irrespective of the nature of the apoptotic stimulus.
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- 2011
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8. Resistance to alkyl-lysophospholipid-induced apoptosis due to downregulated sphingomyelin synthase 1 expression with consequent sphingomyelin- and cholesterol-deficiency in lipid rafts.
- Author
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Van der Luit AH, Budde M, Zerp S, Caan W, Klarenbeek JB, Verheij M, and Van Blitterswijk WJ
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- Androstenes pharmacology, Animals, Bridged-Ring Compounds pharmacology, Cholesterol analysis, Cholesterol metabolism, Down-Regulation, Endocytosis drug effects, Fatty Acids, Monounsaturated pharmacology, Gene Expression drug effects, Membrane Microdomains drug effects, Membrane Microdomains metabolism, Mice, Norbornanes, Phospholipid Ethers metabolism, RNA, Small Interfering pharmacology, Sphingomyelins analysis, Sphingomyelins metabolism, Thiocarbamates, Thiones pharmacology, Transferases (Other Substituted Phosphate Groups) metabolism, Tumor Cells, Cultured, Apoptosis drug effects, Membrane Microdomains chemistry, Phospholipid Ethers pharmacology, Transferases (Other Substituted Phosphate Groups) biosynthesis
- Abstract
The ALP (alkyl-lysophospholipid) edelfosine (1-O-octadecyl-2-O-methyl-rac-glycero-3-phosphocholine; Et-18-OCH3) induces apoptosis in S49 mouse lymphoma cells. To this end, ALP is internalized by lipid raft-dependent endocytosis and inhibits phosphatidylcholine synthesis. A variant cell-line, S49AR, which is resistant to ALP, was shown previously to be unable to internalize ALP via this lipid raft pathway. The reason for this uptake failure is not understood. In the present study, we show that S49AR cells are unable to synthesize SM (sphingomyelin) due to down-regulated SMS1 (SM synthase 1) expression. In parental S49 cells, resistance to ALP could be mimicked by small interfering RNA-induced SMS1 suppression, resulting in SM deficiency and blockage of raft-dependent internalization of ALP and induction of apoptosis. Similar results were obtained by treatment of the cells with myriocin/ISP-1, an inhibitor of general sphingolipid synthesis, or with U18666A, a cholesterol homoeostasis perturbing agent. U18666A is known to inhibit Niemann-Pick C1 protein-dependent vesicular transport of cholesterol from endosomal compartments to the trans-Golgi network and the plasma membrane. U18666A reduced cholesterol partitioning in detergent-resistant lipid rafts and inhibited SM synthesis in S49 cells, causing ALP resistance similar to that observed in S49AR cells. The results are explained by the strong physical interaction between (newly synthesized) SM and available cholesterol at the Golgi, where they facilitate lipid raft formation. We propose that ALP internalization by lipid-raft-dependent endocytosis represents the retrograde route of a constitutive SMS1- and lipid-raft-dependent membrane vesicular recycling process.
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- 2007
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9. Coformulated N-octanoyl-glucosylceramide improves cellular delivery and cytotoxicity of liposomal doxorubicin.
- Author
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Veldman RJ, Koning GA, van Hell A, Zerp S, Vink SR, Storm G, Verheij M, and van Blitterswijk WJ
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- Antibiotics, Antineoplastic pharmacokinetics, Cell Line, Tumor, Cell Membrane drug effects, Cell Membrane metabolism, Cells, Cultured, Chemistry, Pharmaceutical, Doxorubicin administration & dosage, Drug Carriers, Drug Delivery Systems, Humans, Liposomes, Microscopy, Fluorescence, Phospholipids, Antibiotics, Antineoplastic administration & dosage, Antibiotics, Antineoplastic pharmacology, Doxorubicin pharmacokinetics, Doxorubicin pharmacology, Glucosylceramides pharmacology
- Abstract
The anticancer agent doxorubicin is in certain cases administered as a long-circulating liposomal formulation. Due to angiogenesis-related structural abnormalities in the endothelial lining of many neoplasms, these complexes tend to extravasate and accumulate in the tumor stroma. However, delivery of doxorubicin is still not optimal since liposomes are not taken up directly by tumor cells. Instead, doxorubicin is gradually released into the interstitial space, and the subsequent uptake by surrounding cells is a limiting step in the delivery process. We recently demonstrated that plasma membrane-inserted short-chain sphingomyelin facilitates the cellular uptake of free doxorubicin. Here, we report that N-octanoyl-glucosylceramide acts equally potent but is itself less toxic. When coformulated with liposomal doxorubicin, this short-chain glycosphingolipid administered to cultured A431 epidermoid carcinoma cells led to superior (up to 4-fold) cellular doxorubicin accumulation and cytotoxicity, compared with control doxorubicin liposomes. These results were fully reproducible when N-octanoyl-glucosylceramide was postinserted into Caelyx, a commercial liposomal doxorubicin preparation. The doxorubicin-potentiating effect of N-octanoyl-glucosylceramide-enriched liposomes proved relatively insensitive to high serum concentrations, indicating that in vivo application is a feasible option. N-Octanoyl-glucosylceramide enrichment might thus represent a major improvement of conventional liposomal doxorubicin formulations.
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- 2005
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10. Prognostic factors in transitional cell cancer of the bladder: an emerging role for Bcl-2 and p53.
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Ong F, Moonen LM, Gallee MP, ten Bosch C, Zerp SF, Hart AA, Bartelink H, and Verheij M
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- Adult, Aged, Aged, 80 and over, Apoptosis, Carcinoma, Transitional Cell pathology, Carcinoma, Transitional Cell radiotherapy, Cell Cycle, Female, Humans, Immunohistochemistry, Male, Middle Aged, Neoplasm Invasiveness, Prognosis, Proto-Oncogene Proteins metabolism, Proto-Oncogene Proteins p21(ras) metabolism, Retrospective Studies, Survival Analysis, Urinary Bladder Neoplasms pathology, Urinary Bladder Neoplasms radiotherapy, bcl-2-Associated X Protein, Carcinoma, Transitional Cell metabolism, Proto-Oncogene Proteins c-bcl-2 metabolism, Tumor Suppressor Protein p53 metabolism, Urinary Bladder Neoplasms metabolism
- Abstract
Background and Purpose: In a recent study on patients with transitional cell cancer of the bladder treated with curative radiotherapy following TUR-T, we demonstrated that a low apoptotic index and p53 positivity were associated with poor local control. The purpose of this study was to assess the prognostic significance of additional markers implicated in regulation of cell cycle and apoptosis., Patients and Methods: Bcl-2, Bax and p21 positivity were detected immunohistochemically on paraffin-embedded pre-treatment biopsies from 83 patients with invasive transitional cell cancer (TCC) of the bladder, treated with radiotherapy. In addition, markers determined in an earlier analysis, i.e.: p53, apoptotic index, cyclin D1, retinoblastoma protein and Ki-67 were included in the multivariate analysis. A stepwise proportional hazard analysis was performed, adjusting for classic prognostic factors (T-stage, grade, multifocality and macroscopic completeness of the TUR). Positivity was defined as >10% of tumor cells staining positive for Bcl-2, Bax and p21, and >20% for p53., Results: Bcl-2 positivity was found in 63%, Bax was positive in 52% and p21 in 55% of cases. In the PH analysis Bcl-2 positivity was found to be related to poor local control (36 vs. 72% at 3 years; P=0.003), as well as to shorter disease-specific survival (74 vs. 94% at 3 years; P=0.017). Evidence for an adverse effect of p53 positivity was also found (local control: 32 vs. 69% at 3 years;P=0.037, disease-specific survival: 76 vs. 92% at 3 years; P=0.043). In an additional PH analysis, we found poor local control rates for bladder cancers with combined Bcl-2 and p53 positivity (17 vs. 65% at 3 years; P=0.0017), and lower disease specific survival (60 vs. 92%; P=0.0024), disease-free survival (7 vs.35%, P=0.0023) and overall survival (39 vs. 80%; P=0.0018)., Conclusion: This study provides evidence for a poor outcome in patients treated with radiotherapy for TCC of the bladder expressing both Bcl-2 and p53. This relationship was found for local control and disease-free, disease-specific and overall survival.
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- 2001
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11. Alkyl-lysophospholipids as anticancer agents and enhancers of radiation-induced apoptosis.
- Author
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Ruiter GA, Verheij M, Zerp SF, and van Blitterswijk WJ
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- Phosphodiesterase Inhibitors therapeutic use, Phospholipids metabolism, Phosphorylcholine therapeutic use, Antineoplastic Agents therapeutic use, Phospholipid Ethers therapeutic use, Phosphorylcholine analogs & derivatives, Signal Transduction drug effects
- Abstract
Synthetic alkyl-lysophospholipids (ALPs, also referred to as ether-phospholipids) have been studied as antitumor agents for more than a decade. Classical examples of these ALPs include 1-O-octadecyl-2-O-methyl-rac-glycero-3-phosphocholine (ET-18-OCH(3); Edelfosine) and hexadecylphosphocholine (HePC; Miltefosine). Unlike most currently available chemotherapeutic drugs that target the nuclear DNA, ALPs exert their action at the plasma membrane level, where they interfere with mitogenic signal transduction pathways. Whereas malignant cells are highly sensitive to the lethal action of ALPs, normal cells remain relatively unaffected, illustrating the potential selective antitumor properties of this class of drugs. Recently, ALPs have regained interest because of their capacity to induce apoptosis in various tumor cell lines. Moreover, in combination with other (conventional) anticancer regimens, ALPs seem to cause an additive and sometimes synergistic cytotoxic effect. These biologic properties make ALPs attractive drugs for further clinical evaluation. The present review discusses recent insights into the mode(s) of action of ALPs, their interaction with ionizing radiation, and clinical application.
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- 2001
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12. Alkyl-lysophospholipids activate the SAPK/JNK pathway and enhance radiation-induced apoptosis.
- Author
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Ruiter GA, Zerp SF, Bartelink H, van Blitterswijk WJ, and Verheij M
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- Apoptosis radiation effects, Cell Line, Endothelium, Vascular cytology, Endothelium, Vascular drug effects, Endothelium, Vascular radiation effects, Gamma Rays, Humans, JNK Mitogen-Activated Protein Kinases, Jurkat Cells drug effects, Jurkat Cells radiation effects, Mitogen-Activated Protein Kinase 1, Mitogen-Activated Protein Kinase 12, Mitogen-Activated Protein Kinase 3, Phosphorylcholine pharmacology, Signal Transduction radiation effects, U937 Cells drug effects, U937 Cells radiation effects, Apoptosis drug effects, Calcium-Calmodulin-Dependent Protein Kinases metabolism, Mitogen-Activated Protein Kinases, Phospholipid Ethers pharmacology, Phosphorylcholine analogs & derivatives, Protein Kinases metabolism, Signal Transduction drug effects
- Abstract
Alkyl-lysophospholipids (ALPs) represent a new class of antitumor drugs that induce apoptotic cell death in a variety of tumor cell lines. Although their precise mechanism of action is unknown, ALPs primarily act on the cell membrane, where they inhibit signaling through the mitogen-activated protein kinase (MAPK) pathway. Because stimulation of the stress-activated protein kinase/c-Jun NH2-terminal kinase (SAPK/JNK) pathway is essential for radiation-induced apoptosis in certain cell types, we tested the effect of ALPs in combination with ionizing radiation on MAPK/SAPK signaling and apoptosis induction. Here, we present data showing that three ALPs, 1-O-octadecyl-2-O-methyl-rac-glycero-3-phosphocholine, hexadecylphosphocholine, and the novel compound octadecyl-(1,1-dimethyl-piperidinio-4-yl)-phosphate (D-21266) induce time- and dose-dependent apoptosis in the human leukemia cell lines U937 and Jurkat T but not in normal vascular endothelial cells. Moreover, in combination with radiation, ALPs strongly enhance the induction of apoptosis in both leukemic cell lines. All tested ALPs not only prevented MAPK activation, but, like radiation, stimulated the SAPK/JNK cascade within minutes. A dominant-negative mutant of c-Jun inhibited radiation- and ALP-induced apoptosis, indicating a requirement for the SAPK/JNK pathway. Our data support the view that ALPs and ionizing radiation cause an enhanced apoptotic effect by modulating the balance between the mitogenic, antiapoptotic MAPK, and the apoptotic SAPK/JNK pathways. This type of modulation of specific signal transduction pathways in tumor cells may lead to the development of new therapeutic strategies.
- Published
- 1999
13. p53 mutations in human cutaneous melanoma correlate with sun exposure but are not always involved in melanomagenesis.
- Author
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Zerp SF, van Elsas A, Peltenburg LT, and Schrier PI
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- Amino Acid Substitution, Exons, Genes, ras, Humans, Melanoma etiology, Melanoma pathology, Neoplasm Metastasis, Neoplasms, Radiation-Induced pathology, Polymerase Chain Reaction, Polymorphism, Single-Stranded Conformational, Sequence Deletion, Skin Neoplasms etiology, Skin Neoplasms pathology, Tumor Cells, Cultured, Tumor Suppressor Protein p53 genetics, Frameshift Mutation, Genes, p53, Melanoma genetics, Neoplasms, Radiation-Induced genetics, Point Mutation, Skin Neoplasms genetics, Sunlight adverse effects, Ultraviolet Rays adverse effects
- Abstract
In melanoma, the relationship between sun exposure and the origin of mutations in either the N-ras oncogene or the p53 tumour-suppressor gene is not as clear as in other types of skin cancer. We have previously shown that mutations in the N-ras gene occur more frequently in melanomas originating from sun-exposed body sites, indicating that these mutations are UV induced. To investigate whether sun exposure also affects p53 in melanoma, we analysed 81 melanoma specimens for mutations in the p53 gene. The mutation frequency is higher than thus far reported: 17 specimens (21%) harbour one or more p53 mutations. Strikingly, 17 out of 22 mutations in p53 are of the C:G to TA or CC:GG to TT:AA transitional type, strongly suggesting an aetiology involving UV exposure. Interestingly, the p53 mutation frequency in metastases was much lower than in primary tumours. In the case of metastases, a role for sun exposure was indicated by the finding that the mutations are present exclusively in skin metastases and not in internal metastases. Together with a relatively frequent occurrence of silent third-base pair mutations in primary melanomas, this indicates that the p53 mutations, at least in these tumours, have not contributed to melanomagenesis and may have originated after establishment of the primary tumour.
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- 1999
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14. The role of the stress-activated protein kinase (SAPK/JNK) signaling pathway in radiation-induced apoptosis.
- Author
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Verheij M, Ruiter GA, Zerp SF, van Blitterswijk WJ, Fuks Z, Haimovitz-Friedman A, and Bartelink H
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- Endothelium, Vascular pathology, Enzyme Activation, Humans, JNK Mitogen-Activated Protein Kinases, Tumor Cells, Cultured pathology, Apoptosis physiology, Apoptosis radiation effects, Calcium-Calmodulin-Dependent Protein Kinases metabolism, Mitogen-Activated Protein Kinases, Signal Transduction
- Abstract
Ionizing radiation, like a variety of other cellular stress factors, initiates apoptosis, or programmed cell death, in many cell systems. This mode of radiation-induced cell kill should be distinguished from clonogenic cell death due to unrepaired DNA damage. Ionizing radiation not only exerts its effect on the nuclear DNA, but also at the plasma membrane level where it may activate multiple signal transduction pathways. One of these pathways is the stress-activated protein kinase (SAPK) cascade which transduces death signals from the cell membrane to the nucleus. This review discusses recent evidence on the critical role of this signaling system in radiation- and stress-induced apoptosis. An improved understanding of the mechanisms involved in radiation-induced apoptosis may ultimately provide novel strategies of intervention in specific signal transduction pathways to favorably alter the therapeutic ratio in the treatment of human malignancies.
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- 1998
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15. UV-induced N-ras mutations are T-cell targets in human melanoma.
- Author
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van Elsas A, Scheibenbogen C, van der Minne C, Zerp SF, Keilholz U, and Schrier PI
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- Adult, Aged, Female, Humans, Male, Middle Aged, ras Proteins radiation effects, Genes, ras radiation effects, Immunotherapy, Adoptive methods, Melanoma genetics, Melanoma therapy, Mutation, Skin Neoplasms genetics, Skin Neoplasms therapy, T-Lymphocytes, Cytotoxic immunology, Ultraviolet Rays adverse effects, ras Proteins genetics, ras Proteins immunology
- Abstract
Human cutaneous melanoma is heterogeneous with respect to the genetic aberrations involved and the genes altered are potential targets for the immune system. The incidence of cutaneous melanoma is known to be linked to UV peak exposure, and the N-ras oncogene is clearly one of the genes involved in the UV carcinogenesis in melanoma. It is mutated in a significant proportion of melanomas and therefore may serve as a target for T cells. Here, we report that an human leukocyte antigen-A2 binding peptide CLLDILDTAGL, encompassing the frequently found 61-Leu mutation in N-ras, induces cytotoxic T lymphocytes from healthy donor blood that lyse 61-Leu N-ras transfected melanoma cells. Furthermore, we have found an association between the presence of N-ras mutations and clinical response to immunotherapy with interleukin-2 plus interferon in a group of stage IV melanoma patients. Although the overall survival of these patients was not affected by the N-ras status of their melanomas, these studies suggest that mutated N-ras may provide a target for cytotoxic T lymphocytes in melanoma patients.
- Published
- 1997
16. Relevance of ultraviolet-induced N-ras oncogene point mutations in development of primary human cutaneous melanoma.
- Author
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van Elsas A, Zerp SF, van der Flier S, Krüse KM, Aarnoudse C, Hayward NK, Ruiter DJ, and Schrier PI
- Subjects
- Base Sequence, DNA, Neoplasm chemistry, DNA, Neoplasm isolation & purification, Genes, ras genetics, Humans, Melanoma pathology, Molecular Sequence Data, Paraffin Embedding, Point Mutation genetics, Prognosis, Retrospective Studies, Skin Neoplasms pathology, Sunlight adverse effects, Ultraviolet Rays, Genes, ras radiation effects, Melanoma genetics, Point Mutation radiation effects, Skin Neoplasms genetics
- Abstract
Intermittent or recreational exposure to sunlight is thought to contribute to development of human cutaneous melanoma. We investigated the incidence of ras oncogene mutation in human cutaneous melanoma in connection to sun-exposed body sites in the patient, using a large series of DNA samples derived from paraffin-embedded material as well as from fresh tumor samples and cell lines. We first show that, of the ras family, predominantly N-ras is activated (15%), whereas rarely H-ras or K-ras are mutated. The occurrence of N-ras mutations correlates with continuous exposure to sunlight of the primary tumor site. Of all tumors initiated on chronically sun-exposed body sites, 26% contained mutated N-ras, in contrast to 0% of sun-protected melanomas. Melanoma lesions obtained from patients from North or Central Europe contained fewer N-ras mutations (12%) as compared with patients from Australia (24%). Mutations were specifically associated with nodular melanoma and to a lesser extent with lentigo malignant melanoma. N-ras mutations did not correlate with metastasis or survival parameters. This study identifies a subset of cutaneous melanomas that contain in the primary lesion ultraviolet-induced N-ras mutations, which are maintained through further progression.
- Published
- 1996
17. Analysis of N-ras mutations in human cutaneous melanoma: tumor heterogeneity detected by polymerase chain reaction/single-stranded conformation polymorphism analysis.
- Author
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van Elsas A, Zerp S, van der Flier S, Krüse-Wolters M, Vacca A, Ruiter DJ, and Schrier P
- Subjects
- Base Sequence, DNA Mutational Analysis, Humans, Molecular Sequence Data, Paraffin Embedding, DNA, Neoplasm genetics, Genes, ras, Melanoma genetics, Polymerase Chain Reaction, Polymorphism, Single-Stranded Conformational, Skin Neoplasms genetics
- Abstract
Determination of the activation state of oncogenes as well as tumor suppressor genes is a main subject of interest in the analysis of the mechanism of tumor initiation. In human melanoma, the c-myc and N-ras oncogenes have been found to be activated in approximately 50% and 15% of the analyzed material, respectively. These studies have mostly been done on fresh tumor material or cell lines. Only in a few cases has an attempt been made to look at tumor heterogeneity or clonality with respect to the activation of oncogenes. We have adjusted the polymerase chain reaction (PCR)/single-stranded conformation polymorphism analysis (SSCP) technique to screen paraffin-embedded melanoma material for the presence of N-ras mutations and found genetic defects at particular progression stages. In one melanoma of the skin, we were able to sublocalize an N-ras mutation in the intraepidermal tumor part, that was absent in the part deeply invading the dermal layer. We conclude that a thorough investigation of N-ras activation in human melanoma should include analysis of histologically different parts of the tumor.
- Published
- 1995
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18. Separate structural elements within internal transcribed spacer 1 of Saccharomyces cerevisiae precursor ribosomal RNA direct the formation of 17S and 26S rRNA.
- Author
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van Nues RW, Rientjes JM, van der Sande CA, Zerp SF, Sluiter C, Venema J, Planta RJ, and Raué HA
- Subjects
- Base Sequence, Blotting, Northern, DNA Mutational Analysis, DNA, Fungal genetics, Escherichia coli genetics, Gene Deletion, Gene Transfer Techniques, Molecular Sequence Data, Mutation, Nucleic Acid Conformation, RNA Precursors chemistry, RNA, Fungal chemistry, Structure-Activity Relationship, DNA, Fungal chemistry, RNA Precursors metabolism, RNA, Fungal metabolism, RNA, Ribosomal biosynthesis, Saccharomyces cerevisiae genetics
- Abstract
Structural features of Internal Transcribed Spacer 1 (ITS1) that direct its removal from Saccharomyces cerevisiae pre-rRNA during processing were identified by an initial phylogenetic approach followed by in vivo mutational analysis of specific structural elements. We found that S. cerevisiae ITS1 can functionally be replaced by the corresponding regions from the yeasts Torulaspora delbrueckii, Kluyveromyces lactis and Hansenula wingei, indicating that structural elements required in cis for processing are evolutionarily conserved. Despite large differences in size, all ITS1 regions conform to the secondary structure proposed by Yeh et al. [Biochemistry 29 (1990) 5911-5918], showing five domains (I-V; 5'-->3') of which three harbour an evolutionarily highly conserved element. Removal of most of domain II, including its highly conserved element, did not affect processing. In contrast, highly conserved nucleotides directly downstream of processing site A2 in domain III play a major role in production of 17S, but not 26S rRNA. Domain IV and V are dispensable for 17S rRNA formation although an alternative, albeit inefficient, processing route to mature 17S rRNA may be mediated by a conserved region in domain IV. Each of these two domains is individually sufficient for efficient production of 26S rRNA, suggesting two independent processing pathways. We conclude that ITS1 is organized into two functionally and structurally distinct halves.
- Published
- 1994
- Full Text
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19. Growth-related expression of ribosomal protein genes in Saccharomyces cerevisiae.
- Author
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Kraakman LS, Griffioen G, Zerp S, Groeneveld P, Thevelein JM, Mager WH, and Planta RJ
- Subjects
- Base Sequence, Blotting, Northern, Cyclic AMP biosynthesis, DNA, Fungal, DNA-Binding Proteins genetics, Ethanol metabolism, Fungal Proteins genetics, Glucose metabolism, Molecular Sequence Data, Repressor Proteins genetics, Saccharomyces cerevisiae growth & development, Signal Transduction, Transcription, Genetic, Gene Expression Regulation, Fungal, Genes, Fungal, Ribosomal Proteins genetics, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins, Telomere-Binding Proteins, Transcription Factors
- Abstract
The rate of ribosomal protein gene (rp-gene) transcription in yeast is accurately adjusted to the cellular requirement for ribosomes under various growth conditions. However, the molecular mechanisms underlying this co-ordinated transcriptional control have not yet been elucidated. Transcriptional activation of rp-genes is mediated through two different multifunctional transacting factors, ABF1 and RAP1. In this report, we demonstrate that changes in cellular rp-mRNA levels during varying growth conditions are not parallelled by changes in the in vitro binding capacity of ABF1 or RAP1 for their cognate sequences. In addition, the nutritional upshift response of rp-genes observed after addition of glucose to a culture growing on a non-fermentative carbon source turns out not to be the result of increased expression of the ABF1 and RAP1 genes or of elevated DNA-binding activity of these factors. Therefore, growth rate-dependent transcription regulation of rp-genes is most probably not mediated by changes in the efficiency of binding of ABF1 and RAP1 to the upstream activation sites of these genes, but rather through other alterations in the efficiency of transcription activation. Furthermore, we tested the possibility that cAMP may play a role in elevating rp-gene expression during a nutritional shift-up. We found that the nutritional upshift response occurs normally in several mutants defective in cAMP metabolism.
- Published
- 1993
- Full Text
- View/download PDF
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