Land application of livestock manure may reduce the use of mineral fertilizers and alleviate the environmental degradation associated with mineral fertilizers application. However, how to optimize utilization of livestock manure value is not well understood and documentation regarding the nitrogen (N) and phosphorus (P) fertilizer replacement values (NFRV and PFRV, respectively) needs further scrutiny. Therefore, three representative livestock manures, i.e., pig, chicken, and cattle manure, were applied at different usages to assess their N and P availability in comparison to reference mineral fertilizers over summer maize growing seasons. The results show that the average NFRVs of pig, chicken, and cattle manures were 41.7–58.4%, 27.5–44.4%, and −3.6–36.1%, respectively, when based on different references (grain yield, total dry matter yield, grain N uptake, total N uptake), at different N application levels. The NFRV increased with the elevated N application rate for cattle manure treatment. In the P trials, livestock manure had a higher PFRV at a low P application level, and the average PFRVs of pig, chicken, and cattle manures were 80.3–164.8%, 77.9–143.7%, and 94.1–168.0%, respectively, at different P application levels. We conclude that livestock manure produced the lowest NFRV and highest PFRV at a low fertilizer application rate; pig manure had the highest N availability; and cattle manure had the highest P availability.