50 results on '"Yakut S"'
Search Results
2. Krajinska identiteta podeželskih naselij : primer egejske regije v Turčiji
- Author
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ERDEM KAYA, Meltem, KAYA, Hasan Serdar, TERZI, Fatih, TOLUNAY, Doğanay, ALKAY, Elif, BEKTAŞ BALÇIK, Filiz, GÜLER TOZLUOĞLU, Ezgi, and SERDAR YAKUT, S. Elif
- Published
- 2024
3. Mosaic Intrachromosomal Triplication of (12)(p11.2p13) in a Patient with Pallister-Killian Syndrome
- Author
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Yakut S, Mıhcı E, Altiok Clark, Cetin Z, Keser I, Berker S, and Luleci G
- Subjects
pallister-killian syndrome (pks) ,tetrasomy 12p ,intrachromosomal triplication ,Genetics ,QH426-470 - Published
- 2012
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4. Turner Syndrome with Isochromosome Xq and Familial Reciprocal Translocation t(4;16)(p15.2;p13.1)
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Cetin Z, Mendilcioglu I, Yakut S, Berker-Karauzum S, Karaman B, and Luleci G
- Subjects
turner syndrome ,reciprocal translocation ,cytogenetics ,isochromosome xq ,Genetics ,QH426-470 - Published
- 2011
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5. Aplasia Ras Homologous Member I Gene and Development of Glial Tumors
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Yakut S, Tuncer M, Berker M, Goksu E, Gurer I, Ozes O, Luleci G, and Karauzum S
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cancer ,dna testing ,genetic testing ,genes ,methylation ,Genetics ,QH426-470 - Published
- 2011
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6. Thickness dependence of dielectric properties of TlGaS2 thin films
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Cicek, Z., Yakut, S., Deger, D., Bozoglu, D., Mustafaeva, S., Ismailova, P., Hasanov, A.A., and Ulutas, K.
- Published
- 2023
- Full Text
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7. How does the isophthalic unsaturated polyester affect the dielectric properties, the glass transition, and the ductility of bitumen?
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Ulutas, K., Yakut, S., Bozoglu, D., Sitilbay, B.D., Karasahin, M., Yardim, S., and Deger, D.
- Subjects
BITUMEN ,IONOSPHERIC critical frequencies ,POLYESTER fibers industry ,GUMS & resins ,JUNCTURE (Linguistics) - Abstract
Bitumen with 50/70 penetration was prepared and modified by doping with the unsaturated polyester resin based on isophthalic acid at 5% by weight (w/w%). The structural, mechanical, and thermal properties of bitumen and bitumen modified with unsaturated polyester resin %5 (UPR) were determined. The dielectric properties of bitumen and modified bitumen were investigated in the frequency and temperature ranges of 0.1-10
6 Hz and (-)40°C- 40°C, respectively. Polarization mechanisms, glass-transition temperature, and ductility of all samples were determined and compared to each other. The glass transition temperature of the modified bitumen shifts toward low temperatures in comparison to the bitumen. So, it can be suggested that the use of modified bitumen is very attractive in regions where the temperature differences are high. Also, the dielectric analysis method is an innovative alternative to determining modified bitumen's low-temperature performance. It was found that the modification with UPR provide strength and flexibility to asphalt. [ABSTRACT FROM AUTHOR]- Published
- 2024
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8. Krajinska identiteta podeželskih naselij: primer egejske regije v Turčiji.
- Author
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KAYA, Meltem ERDEM, KAYA, Hasan Serdar, TERZI, Fatih, TOLUNAY, Doğanay, ALKAY, Elif, BALÇIK, Filiz BEKTAŞ, TOZLUOĞLU, Ezgi GÜLER, and SERDAR YAKUT, S. Elif
- Abstract
Copyright of Urbani Izziv is the property of Urban Planning Institute of the Republic of Slovenia and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2024
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9. Plasma discharge power dependent AC conductivity of plasma poly(ethylene oxide) thin films
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Yakut, S., Ulutas, K., and Deger, D.
- Published
- 2018
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10. Dielectric properties and ac conductivity of TlSbTe2 thin films
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Deger, D., Ulutaş, K., Yakut, Ş., and Kara, H.
- Published
- 2015
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11. Prenatal management, pregnancy and pediatric outcomes in fetuses with septated cystic hygroma
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Sanhal, C.Y., Mendilcioglu, I., Ozekinci, M., Yakut, S., Merdun, Z., Simsek, M., and Luleci, G.
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- 2014
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12. ABNORMAL SIGNAL PATTERNS INVOLVED IN T(12;21) TEL-AML1 IN CHILDHOOD ACUTE LYMPHOBLASTIC LEUKEMIA PATIENTS: H39
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Karauzum, Berker S, Ozkaya, C F, Yakut, S, Cetin, Z, Kupesiz, A, Tezcan, G, Clark, Altok O, Hazar, V, and Luleci, G
- Published
- 2010
13. TWO CASES WITH RARE CHROMOSOMAL ABNORMALITY OF CHROMOSOME 12p PRESENTING PALLISTER-KILLIAN SYNDROME PHENOTYPE: A18
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Yakut, S, Luleci, G, Mihci, E, Cetin, Z, Keser, I, and Karauzum, Berker S
- Published
- 2010
14. Role of magnetic resonance imaging in the early diagnosis of Takayasu arteritis
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Halefoglu, A M and Yakut, S
- Published
- 2005
15. Telomere-specific fluorescence in situ hybridization analysis of couples with five or more recurrent miscarriages
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Yakut, S, Berker-Karaüzüm, S, Şimşek, M, Zorlu, G, Trak, B, and Lüleci, G
- Published
- 2002
16. Influence of Bi on dielectric properties of GaAs1−xBix alloys.
- Author
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Ulutas, K., Yakut, S., Bozoglu, D., Deger, D., Arslan, M., and Erol, A.
- Subjects
- *
DIELECTRIC properties , *DIELECTRIC devices , *ALLOYS , *OPTICAL properties , *AUDITING standards , *SILVER alloys - Abstract
Pure GaAs and GaAs1−xBix alloys with different Bi ratios (1 %, 2.5 %, 3.5 %) fitted with silver contacts were measured with a dielectric spectroscopy device. Dielectric characterization was performed at room temperature in the frequency range of 0.1 Hz to 1 MHz. GaAs exhibits three relaxation regions corresponding to space-charge, dipolar and ionic polarizations in sequence with increasing frequency while GaAs1−xBix samples show only a broad dipolar polarization in the same frequency range. This result proves the filling of the lattice with Bi through making a new bonding reducing the influence of ionic polarization. This finding supports the previous results concerning optical properties of GaAs1−xBix, presented in the literature. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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17. Thickness dependence of the dielectric properties of thermally evaporated Sb2Te3 thin films.
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Ulutas, K, Deger, D, and Yakut, S
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- 2013
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18. P06.05: Prenatal management, pregnancy and pediatric outcome in fetuses with septated cystic hygroma.
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Mendilcioglu, I., Sanhal, C. Y., Yakut, S., Simsek, M., Ozekinci, M., Saritas, Z., and Luleci, G.
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ABSTRACTS ,PREGNANCY ,FETUS - Abstract
An abstract of the article "Prenatal management, pregnancy and pediatric outcome in fetuses with septated cystic hygroma," by I. Mendilcioglu, C. Y. Sanhal, S. Yakut, M. Simsek, M. Ozekinci, Z. Saritas, and G. Luleci is presented.
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- 2012
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19. Investigation of the effects of silymarin and vitamin C on kidney damage and aquaporin-2 downregulation in lithium-induced nephrogenic diabetes insipidus in rats.
- Author
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Yakut S, Tarakçı Gençer B, Yalçın MH, Aydın S, and Yüksel H
- Abstract
Although lithium (LIT) therapy is key in managing bipolar disorder long-term, prolonged use significantly contributes to acquired Nephrogenic Diabetes Insipidus (NDI). This study examined whether combining Silymarin (SIL) with Vitamin C (Vit C) enhances protection against lithium-induced nephrotoxicity in rats, comparing their individual antioxidant effects as well. Rats subjected to Li exposure were provided with a standard commercial diet supplemented with 80 mmol LiCl per kilogram for 28 days. Concurrently, SIL and Vit C were administered orally at dosages of 200 and 100 mg/kg body weight, respectively, throughout the 28 days. The study assessed levels of reactive oxygen species (ROS), glutathione (GSH), and malondialdehyde (MDA), as well as the enzyme activity of superoxide dismutase (SOD), to evaluate the protective effects of SIL and Vit C against oxidative stress. Aquaporin-2 (AQP2) levels in kidney tissues were evaluated using immunohistochemistry and ELISA. Serum and urine parameters (sodium, potassium, creatinine, blood urea nitrogen [BUN], and urea) and serum lithium levels were also measured. Lithium-induced nephrotoxicity showed increased renal toxicity markers and decreased antioxidant enzyme activity. SIL administration significantly reduced markers of kidney tissue toxicity, increased antioxidant enzyme activities, regulated the aforementioned physiological parameters in blood and urine, and downregulated AQP2 expression in the kidney. However, Vit C administration did not demonstrate a significant protective effect against lithium-induced renal toxicity. These findings indicate that SIL effectively protects against lithium-induced nephrotoxicity, whereas Vitamin C does not exhibit this protective effect.
- Published
- 2025
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20. Silver Nanoparticles Loaded With Oleuropein Alleviates LPS-Induced Acute Lung Injury by Modulating the TLR4/P2X7 Receptor-Mediated Inflammation and Apoptosis in Rats.
- Author
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Yakut S, Gelen V, Kara H, Özkanlar S, and Yeşildağ A
- Subjects
- Rats, Apoptosis, Lipopolysaccharides, Oxidative Stress, Cytokines blood, Rats, Sprague-Dawley, Male, Signal Transduction, Silver administration & dosage, Metal Nanoparticles administration & dosage, Anti-Infective Agents administration & dosage, Iridoid Glucosides administration & dosage, Inflammation blood, Inflammation drug therapy, Acute Lung Injury blood, Acute Lung Injury drug therapy, Acute Lung Injury pathology
- Abstract
Toll-like receptor 4 (TLR-4) ligands were initially shown to be the source of lipopolysaccharide (LPS), a gram-negative bacterium's cell wall immunostimulatory component. Oxidative stress, apoptosis, and inflammation are all potential effects of LPS treatment on the lungs. By triggering oxidative stress and inflammation, these negative effects could be avoided. Robust flavonoid oleuropein (OLE) exhibits anti-inflammatory, antiproliferative, and antioxidative properties. A nanodelivery system could improve its low bioavailability, making it more effective and useful in treating chronic human ailments. This study evaluates the effects of AgNP-loaded OLE on LPS-induced lung injury in rats in terms of TLR4/P2X7 receptor-mediated inflammation and apoptosis. Forty-eight male albino rats were randomly divided into eight groups. Drugs were administered to the groups in the doses specified as follows: Control, LPS (8 mg/kg ip), OLE (50 mg/kg) AgNPs (100 mg/kg), OLE + AgNPs (50 mg/kg), LPS + OLE (oleuropein 50 mg/kg ig + LPS 8 mg/kg ip), LPS + AgNPs (AgNPs 100 mg/kg ig + LPS 8 mg/kg ip), and LPS + OLE + AgNPs (OLE + AgNPs 50 mg/kg + LPS 8 mg/kg ip). After the applications, the rats were decapitated under appropriate conditions, and lung tissues were obtained. Oxidative stress (SOD, MDA, and GSH), and inflammation (IL-6, IL-1β, TNF-α, Nrf2, P2X7R, AKT, and TLR4) parameters were evaluated in the obtained lung tissues. Additionally, histopathology studies were performed on lung tissue samples. The data obtained were evaluated by comparison between groups. Both OLE and OLE + AgNPs showed potential in reducing oxidative stress, inflammation, and apoptosis (p < 0.05). These findings were supported by histopathological analysis, which revealed that tissue damage was reduced in OLE and OLE + AgNPs-treated groups. According to the results, LPS-induced lung injury can be reduced by using nanotechnology and producing OLE + AgNP., (© 2024 The Author(s). Environmental Toxicology published by Wiley Periodicals LLC.)
- Published
- 2024
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21. Therapeutic Potential of Silymarin in Mitigating Paclitaxel-Induced Hepatotoxicity and Nephrotoxicity: Insights into Oxidative Stress, Inflammation, and Apoptosis in Rats.
- Author
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Yakut S, Atcalı T, Çaglayan C, Ulucan A, Kandemir FM, Kara A, and Anuk T
- Subjects
- Animals, Rats, Male, Chemical and Drug Induced Liver Injury prevention & control, Chemical and Drug Induced Liver Injury drug therapy, Chemical and Drug Induced Liver Injury etiology, Antioxidants pharmacology, Antioxidants therapeutic use, Liver drug effects, Kidney drug effects, Antineoplastic Agents, Phytogenic therapeutic use, Antineoplastic Agents, Phytogenic pharmacology, Oxidative Stress drug effects, Rats, Wistar, Apoptosis drug effects, Inflammation drug therapy, Paclitaxel pharmacology, Paclitaxel therapeutic use, Silymarin pharmacology, Silymarin therapeutic use
- Abstract
Background: Paclitaxel (PAX) is a widely used chemotherapy drug for various cancer types but often induces significant toxicity in multiple organ systems. Silymarin (SIL), a natural flavonoid, has shown therapeutic potential due to its multiple benefits., Aims: To evaluate the therapeutic efficacy of SIL in mitigating liver and kidney damage induced by PAX in rats, focusing on oxidative stress, inflammation, and apoptosis pathways., Study Design: Experimental animal model., Methods: The study included 28 male Wistar rats aged 12-14 weeks weighing 270-300 g. The rats were divided into four groups: control, SIL, PAX, and PAX + SIL, with seven in each group. The rats received intraperitoneal (i.p.) injections at a dose of 2 mg per kilogram of body weight of PAX for 5 successive days, followed by oral gavage with 200 mg/kg body mass of SIL for 10 uninterrupted days. We examined the effect of SIL on specific serum biochemical parameters using an autoanalyzer and rat-specific kits. The spectrophotometric methods was used to investigate oxidative stress indicators in kidney and liver tissues. Aquaporin-2 (AQP-2), B-cell lymphoma-2 (Bcl-2), cysteine aspartate-specific protease-3 (caspase-3), interleukin-6 (IL-6), nuclear factor kappa B (NF-κB), and streptavidin-biotin staining were used to assess immunoreactivity in PAX-induced liver and kidney injury models., Results: SIL treatment significantly reduced serum levels of alanine aminotransferase, aspartate aminotransferase, creatinine, urea, and C-reactive protein, indicating its effectiveness in treating PAX-induced liver and kidney injury. SIL treatment significantly reduced oxidative stress by increasing essential antioxidant parameters, such as superoxide dismutase, catalase, glutathione peroxidase, and glutathione. It also reduced malondialdehyde levels in liver and kidney tissues of SIL-PAX groups ( p < 0.05). SIL administration reduced NF-κB, caspase-3, and IL-6 expression while increasing Bcl-2 and AQP2 levels in liver and kidney tissues of rats treated with SIL and PAX ( p < 0.05)., Conclusion: Our findings indicate the potential of SIL to alleviate PAX-induced liver and kidney damage in rats by reducing oxidative stress, inflammation, and apoptotic processes., Competing Interests: Conflict of Interest: The authors declare that they have no conflict of interest.
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- 2024
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22. Production, characterization and therapeutic efficacy of egg yolk antibodies specific to Nosema ceranae.
- Author
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Açık MN, Karagülle B, Yakut S, Öztürk Y, Kutlu MA, Kalın R, and Çetinkaya B
- Subjects
- Animals, Bees, Egg Yolk, Chickens, Antibodies, Nosema
- Abstract
Nosema disease, caused by Nosema ceranae, one of the single-celled fungal microsporidian parasites, is one of the most important and common diseases of adult honey bees. Since fumagillin, which has been used for decades in the control of Nosema disease in honey bees (Apis mellifera), poses a toxic threat and its efficacy against N. ceranae is uncertain, there is an urgent need to develop alternative prophylactic and curative strategies for the treatment of this disease. The main aim of this study was to investigate the therapeutic potential of specific egg yolk immunoglobulins (IgY) on Nosema disease. For this purpose, the presence of N. ceranae was determined by microscopic and PCR methods in honey bees collected from Nosema suspicious colonies by conducting a field survey. Layered Ataks chickens, divided into four groups each containing 20 animals, were vaccinated with live and inactivated vaccines prepared from field isolates of N. ceranae. Eggs were collected weekly for 10 weeks following the last vaccination. IgY extraction was performed using the PEG precipitation method from egg yolks collected from each group, and the purity of the antibodies was determined by SDS-PAGE and Western Blot. The presence of N. ceranae-specific IgYs was investigated by Western Blot and indirect ELISA methods. It was determined that specific IgYs showed high therapeutic efficacy on Nosema disease in naturally infected bee colonies. In addition, honey bees collected from infected colonies were brought to the laboratory and placed in cages with 30 bees each, and the effectiveness of IgYs was investigated under controlled conditions. It was detected that specific IgY reduced the Nosema spore load and the number of infected bees significantly in both the field and experimental study groups treated for seven days. It was concluded that chicken IgYs, an innovative and eco-friendly method, had a significant potential for use as an alternative to antifungal drugs., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Açık et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2024
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23. Evaluation of the toxicological effects of favipiravir (T-705) on liver and kidney in rats: biochemical and histopathological approach.
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Kara A, Yakut S, Caglayan C, Atçalı T, Ulucan A, and Kandemir FM
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- Animals, Rats, Aquaporin 2, Antiviral Agents pharmacology, Antiviral Agents toxicity, Kidney drug effects, Kidney metabolism, Liver drug effects, Liver metabolism, Amides pharmacology, Amides toxicity, Pyrazines pharmacology, Pyrazines toxicity
- Abstract
Favipiravir is a selective RNA polymerase inhibitor and a broad-spectrum antiviral drug, an important agent used in viral infections, including Ebola, Lassa, and COVID-19. This study aims to evaluate the potential toxicological effects of favipiravir administration on rats' liver and kidney tissues. Favipiravir was applied for five and ten days in the present study. During this period, it was aimed to determine possible toxic effects on the liver and kidney. For this purpose, the impact of favipiravir on liver and kidney tissues were examined using histopathologic and biochemical methods. The present study showed that favipiravir administration led to an elevation in the liver and kidney serum enzymes and oxidative and histopathologic damages. Favipiravir administration caused apoptotic cell death (Caspase-3 and Bcl-2), inflammation (NF-κB and IL-6), and a decrease in renal reabsorption (AQP2) levels. In the evaluation of the findings obtained in this study, it was determined that the favipiravir or metabolites caused liver and kidney damages.
- Published
- 2023
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24. Knowledge, Attitudes, Practices and Some Characteristic Features of People Recovered from COVID-19 in Turkey.
- Author
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Yakut S, Karagülle B, Atçalı T, Öztürk Y, Açık MN, and Çetinkaya B
- Subjects
- Cross-Sectional Studies, Health Knowledge, Attitudes, Practice, Humans, SARS-CoV-2, Surveys and Questionnaires, Turkey, COVID-19, Pandemics
- Abstract
Background and objectives: The whole world is spending an extraordinary effort by implementing various measures to control and prevent the COVID-19 pandemic. The effectiveness of the preventive measures is greatly influenced by the public's knowledge, attitudes, and practices (KAP) towards the disease. In this study, KAP values and some characteristic features of people recovered from COVID-19 were determined by conducting a questionnaire survey. Materials and Methods: The questionnaire survey was conducted between 1 and 10 January 2021 on people who recovered from COVID-19 in a total of 150 different locations in Turkey. The questionnaire consisted of 46 questions: 14 for determining demographic and some characteristic features of the participants, and 32 for determining their knowledge, attitudes, and practices. The data obtained were evaluated using descriptive statistics, chi-squared tests, t -tests, and one-way analysis of variance (ANOVA). Results : It was determined that 63% of the participants had at least one chronic illness, 3.9% suffered from the disease twice, and 45.2% changed their smoking habits. The average knowledge score of the participants about COVID-19 was calculated as 10.25 (SD = 2.37; range 0-15). The participants were found to have a high level of knowledge about the symptoms and prevention methods in general, and positive changes in post-illness attitudes and behaviors. However, there was a great instability regarding the drugs and vaccines used in the treatment of COVID-19. Conclusions: This was the first study carried out in Turkey to determine knowledge, attitudes, practices, and some characteristic features of people who recovered from COVID-19. It was suggested that health authorities in the country need to develop more effective strategies and policies to find out permanent solutions in order to control and prevent the COVID-19 pandemic by taking into account the concerns of the public, particularly with regards to the drugs used in the treatment and vaccination.
- Published
- 2021
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25. Effect of thickness on the dielectric properties and glass transition of plasma poly(ethylene oxide) thin films.
- Author
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Yakut S, Ulutas K, and Deger D
- Subjects
- Calorimetry, Differential Scanning methods, Crystallization methods, Dielectric Spectroscopy methods, Transition Temperature, Glass chemistry, Polyethylene Glycols chemistry, Polymers chemistry
- Abstract
Plasma poly(ethylene oxide) thin films at different thicknesses of 20, 100, 250, 500 nm were deposited by plasma-assisted physical vapor deposition on glass substrates between aluminum electrodes in capacitor form at 5 W plasma discharge power. The structural analyses were performed by Fourier transform in7frared spectroscopy. The dielectric properties such as dielectric constant κ
' and electric modulus M'' were defined by dielectric spectroscopy measurements. Dielectric spectroscopy measurements were performed in the angular frequency range of 10-1 -106 rad/s and temperature range of 353-173 K range. The measurement results showed that α, β, and γ-relaxations, which are the expected relaxations in polymeric structures, are effective on total polarization in the investigated frequency and temperature range. Dielectric constant exhibits an increase till 500 nm, then reaches a saturation behavior. When resonance angular frequencies belonging to α-relaxation were fitted by Vogel-Fulcher-Tamman equation. It was observed that glass transition temperatures increase with decreasing thickness. These results support the influence of the dead layer to total polarization and the dynamics of the structure. Besides, it was shown that dielectric spectroscopy is a useful way to analyze the glass transition temperature in thin film form., (Copyright © 2019 Elsevier B.V. All rights reserved.)- Published
- 2019
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26. We can Diagnose it if we Consider it. Diagnostic Pitfall for Placenta: Placental Mesenchymal Dysplasia.
- Author
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Toru HS, Aytekin EÇ, Sanhal CY, Yakut S, Çetin Z, Mendilcioğlu İİ, and Peştereli HE
- Subjects
- Adult, Female, Humans, Placenta Diseases pathology, Pregnancy, Placenta Diseases diagnosis
- Abstract
Placental mesenchymal dysplasia is an increasingly recognizable abnormality. Early cases have been confused with partial hydatidiform mole. Placental mesenchymal dysplasia is probably under-diagnosed because of being an unfamiliar clinical entity and also mistaken for gestational trophoblastic disease due to the similar sonographic findings of two entities. In this report, we describe the clinical, gross, and histopathological findings of placental mesenchymal dysplasia in two cases. The 33-week-preterm baby of a 26-year-old woman with cardiovascular disease and 342 gram placenta and the 19-week fetus with trisomy 21 of a 40 year-old woman were terminated. Macroscopically thick-walled vessels and microscopically hydropic villous with peripherally localized thick-walled vessels without trophoblastic cell proliferation were observed in both cases. These two cases represent a rare placental anomaly that is benign but it is challenging to distinguish placental mesenchymal dysplasia from an incomplete mole. Placental mesenchymal dysplasia should be included in the differential diagnosis of sonographic findings that show a normal appearing fetus and a placenta with cystic lesions. Placental mesenchymal dysplasia is associated with pregnancy-related hypertension. In conclusion, the most important point is "you can diagnose it if you consider it".
- Published
- 2018
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27. Ultrasonographic and Cytogenetic Issues in Prenatal Diagnosis of Pallister Killian Syndrome.
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Cetin Z, Sanhal C, Karauzum SB, Mendilcioglu I, and Yakut S
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- Adult, Chromosome Disorders diagnostic imaging, Chromosome Disorders genetics, Chromosomes, Human, Pair 12 genetics, Cytogenetics, Female, Humans, Pregnancy, Ultrasonography, Prenatal, Chromosome Disorders diagnosis, Prenatal Diagnosis
- Published
- 2016
28. A MOLECULARLY CHARACTERIZED INTERSTITIAL DELETION ENCOMPASSING THE 11q14.1-q23.3 REGION IN A CASE WITH MULTIPLE CONGENITAL ABNORMALITIES.
- Author
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Cetin Z, Altiok-Clark O, Yakut S, Guzel-Nur B, Mihci E, and Berker-Karauzum S
- Subjects
- Adolescent, Cytogenetic Analysis, Humans, Male, Abnormalities, Multiple genetics, Chromosome Deletion, Chromosomes, Human, Pair 11 genetics, Intellectual Disability genetics
- Abstract
Interstitial deletion of chromosome 11 long arm is a rare event. In most of the interstitial deletions on the long arm of chromosome 11 both the position and the size of these deletions are heterogeneous making a precise karyotype-phenotype correlation. In only a few of the reported cases has the deletion been molecularly characterized. Our patient was a 13-year-old male presented; mental motor retardation, strabismus, myopia, retinopathy, sensorineural hearing loss, a long and triangular face, a broad forehead, hypotelorism, nasal septal deviation, a beaked nose, hypoplastic ala nasie, bilateral low-set ears, a high arched palate, crowded teeth, retrognathia, thin lips, a long neck, and sloping shoulders, hyperactive behavior, pulmonary stenosis and lumbar scoliosis. Conventional cytogenetic analysis revealed 46,XY,del(11)(q14.1-q23.3) karyotype in the patient. Array-CGH analysis of the patient's DNA revealed an interstitial deletion encompassing 33.2 Mb in the 11q14.1-q23.3 genomic region (chr11: 83,161,443-116,401,751 ; Hg19). In this report, we present a patient with an interstitial deletion on the long arm of chromosome 11 that encompassed the 11q14.1-q23.3 region; and, using array-CGH analysis, we molecularly characterized the deleted region.
- Published
- 2016
29. A familial interstitial 4q35 deletion with no discernible clinical effects.
- Author
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Yakut S, Clarck OA, Sanhal C, Nur BG, Mendilcioglu I, Karauzum SB, and Cetin Z
- Subjects
- Comparative Genomic Hybridization, Humans, In Situ Hybridization, Fluorescence, Chromosome Deletion, Chromosomes, Human, Pair 4
- Abstract
Small deletions on the long arm of distal chromosome 4 do not appear to result in gross congenital malformations, with the most frequently reported clinical findings including mild to moderate intellectual disability, learning disabilities and minor dysmorphic features. Here we report on a cytogenetically detectable familial interstitial chromosome 4 long arm deletion with no discernible phenotypic effects in a mother and her two daughters. The karyotypes of the mother and her two daughters were: 46,XX,del(4)(q35.1q35.2). Based on the results of FISH analyses using whole chromosome specific and subtelomeric probes, the karyotype was designated as: 46,XX,del(4)(q35.1q35.2). ish del(4)(q35-qter)(WCP4+, 36P21+, dJ963K6-). Array-CGH analysis showed an interstitial deletion encompassing 5.75 Mb in the 4q35.1-q35.2 genomic region (chr4:184,717,878-190,469,337; hg19). This is the first report on a cytogenetically detectable familial interstitial chromosome 4 long arm deletion in which there are no discernible phenotypic effects. Both our findings and a review of the literature suggest that more detailed molecular analyses are needed in cases with distal chromosome 4 long arm deletions especially those with breakpoints in the 4q35 region to establish a more precise genotype-phenotype correlation., (© 2015 Wiley Periodicals, Inc.)
- Published
- 2015
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30. PRENATAL DIAGNOSIS OF DE NOVO PERICENTRIC INVERSION INV(2)(p11.2z13).
- Author
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Yakut S, Cetin Z, Sanhal C, Karaman B, Mendilcioglu I, and Karauzum SB
- Subjects
- Adult, Female, Humans, Pregnancy, Prenatal Diagnosis, Young Adult, Chromosome Inversion genetics, Chromosomes, Human, Pair 2 genetics, Fetal Diseases diagnosis
- Abstract
We here report a prenatal case with de novo pericentric inversion inv(2)(p11.2q13). A 20-years-old G1PO woman was referred for amniocentesis at 17 weeks of gestation, because of a positive second trimester screening test for aneuploidy. A de novo pericentric inversion inv(2)(p11.2q13) was detected during conventional cytogenetic analysis. Array-CGH analysis of the fetus showed no subtle chromosomal imbalances at the breakpoints. Genetic counseling was given to the family and the family decided to continue the pregnancy. To our knowledge, our case is the third prenatally detected de novo case with inv(2)(p11.2q13), and also the first case in which molecular karyotyping analysis were also applied.
- Published
- 2015
31. Chromosome abnormalities identified in 457 spontaneous abortions and their histopathological findings.
- Author
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Yakut S, Toru HS, Çetin Z, Özel D, Şimşek M, Mendilcioğlu İ, and Lüleci G
- Subjects
- Female, Genetic Predisposition to Disease, Gestational Age, Humans, Karyotyping, Maternal Age, Phenotype, Predictive Value of Tests, Pregnancy, Risk Factors, Tissue Culture Techniques, Abortion, Spontaneous genetics, Abortion, Spontaneous pathology, Chromosome Aberrations, Chromosomes, Human
- Abstract
Objective: About 15% of clinically recognized pregnancies result in spontaneous abortion in the first trimester and the vast majority of these are the result of chromosome abnormalities. Studies of chromosomal constitutions of first trimester spontaneous abortions have revealed that at least 50% of the abortions have an abnormal karyotype. In this study we aimed to report the single centre experience of anomalies detected in spontaneous abortions., Material and Method: We present rare numerical and structural cytogenetic abnormalities detected in spontaneous abortion materials and the histopathological findings of rest material of abortion specimens in our study population., Results: Among 457 cases, 382 were successfully karyotyped while cell culture of 75 cases failed. Cytogenetic abnormalities were detected in 127 of 382 cases (33.24%). Autosomal trisomies were the predominant chromosomal abnormalities with a frequency of 48.8%. Structural chromosomal abnormalities were infrequent in conception materials. The mean age of the mothers was highest in trisomy group, the difference being significantly important (ANOVA p < 0.001). The most frequent chromosomal abnormalities were Turner syndrome, triploidy and trisomy of chromosome 16 followed by trisomy of chromosomes 22 and 21 and tetraploidy. Double trisomies and structural chromosomal abnormalities were rare. Trisomies were more frequent in advanced maternal age., Conclusion: Detection of chromosomal abnormalities in spontaneous abortion materials is very important to clarify the causes of loss of pregnancy. Detection of structural chromosomal abnormalities in the cases and their carrier parents can provide proper genetic counseling to these families. These families can be directed towards pre-implantation genetic diagnosis to prevent further pregnancies with complications.
- Published
- 2015
- Full Text
- View/download PDF
32. PRENATAL DIAGNOSIS OF DE NOVO SUPERNUMERARY MARKER CHROMOSOME ORIGINATED FROM CHROMOSOME 16 BY ARRAY-CGH.
- Author
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Yakut S, Cetin Z, Sanhal C, Karauzum SB, Karaman B, and Simsek M
- Subjects
- Adult, Amniocentesis, Female, Humans, Pregnancy, Chromosome Aberrations, Chromosomes, Human, Pair 16 genetics, Prenatal Diagnosis
- Abstract
A 33 years-old pregnant woman was referred for amniocentesis at 19 weeks of gestation due to abnormal serum biochemistry. A non-satellited, monocentric marker chromosome was observed with a frequency of 50% in cultured amniocytes. Parental karyotypes were normal. The marker chromosome was found to be derived from chromosome 16 by FISH and array-CGH analysis. Genetic counseling was given to parents and the family decided to terminate the pregnancy. Dysmorphic findings including; low set ears, exophtalmos depressed nasal bridge, large mouth and lips, posture anomalies at the extremities were detected at autopsy.
- Published
- 2015
33. Rare structural chromosomal abnormalities in prenatal diagnosis; clinical and cytogenetic findings on 10125 prenatal cases.
- Author
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Yakut S, Çetin Z, Şİmşek M, Mendilcioğlu II, Toru HS, Berker Karaüzüm S, and Lüleci G
- Subjects
- Amniocentesis, Autopsy, Chromosome Disorders diagnostic imaging, Chromosome Disorders pathology, Comparative Genomic Hybridization, Female, Genotype, Humans, In Situ Hybridization, Fluorescence, Phenotype, Predictive Value of Tests, Pregnancy, Turkey, Ultrasonography, Prenatal, Chromosome Aberrations, Chromosome Disorders genetics, Genetic Testing methods, Prenatal Diagnosis methods
- Abstract
Unlabelled: Objective: The aim of this study was presentation of the ultrasonographic findings and perinatal autopsy of cases with rare chromosomal abnormalities., Material and Method: A total of 10125 prenatal cases over 17 years including 8731 amniocentesis, 973 chorionic villus sampling, and 421 fetal blood sampling cases were evaluated for prenatal cytogenetic diagnosis. Conventional cytogenetic studies, fluorescence in situ hybridization studies, and Array-CGH analysis techniques were used for genetic analysis., Results: A structural chromosomal abnormality was observed in 95 cases. The most frequently observed structural abnormalities were balanced translocations with a frequency of 53.7% (51 cases) followed by unbalanced translocations (16.8%), inversions (11.6%), supernumerary marker chromosomes (8.4%), duplications (4.2%), deletions and ring chromosomes (2.1%) and complex translocation (1.1%). Rare structural chromosomal abnormalities including de novo balanced translocations, unbalanced translocations, inversions, duplications, deletions, ring chromosomes, and supernumerary marker chromosomes were detected in 24 cases., Conclusion: The rate of rare chromosomal abnormalities varies from 2.4% (South East Ireland) to 12.9% (Northern England) in Europe with a total rate of 7.4/10 000 births. In our study, the overall rate of chromosomal abnormality in prenatal cytogenetic diagnosis was 3.7%, similar to South East Ireland. Ultrasonographic and perinatal autopsy findings of the cases with rare structural chromosomal abnormalities are important for proper genetic counseling for further similar cases.
- Published
- 2015
- Full Text
- View/download PDF
34. Prenatal diagnosis of isochromosome 21p and isochromosome 21q in a fetus with Down syndrome.
- Author
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Yakut S, Sanhal C, Manguoglu E, and Cetin Z
- Subjects
- Abortion, Eugenic, Adult, Chorionic Villi Sampling, Chromosome Banding, Down Syndrome diagnosis, Female, Genetic Counseling, Humans, In Situ Hybridization, Fluorescence, Karyotyping, Pregnancy, Real-Time Polymerase Chain Reaction, Chromosomes, Human, Pair 21 genetics, Down Syndrome genetics, Isochromosomes genetics, Prenatal Diagnosis methods
- Abstract
The aim of this study was to present the first case with Down syndrome in conjunction with de novo isochromosomes of both short and long arm of the chromosome 21. Cytogenetics, molecular cytogenetics and molecular genetic analysis were performed on chorionic villus sampling at 12 weeks of gestation of a 42-years-old pregnant woman. According to cytogenetics, molecular cytogenetics and molecular genetic analysis the karyotype was designated as: 47,XY,i(21) (qter --> q10::q10 --> qter),+i(21) (pter --> p10::p10 --> 10pter).ish i(21)(qter --> q10::q10 --> qter)(CEP13/21+,WCP21+),+i(21) (pter --> p10::p10 --> pter)(CEP13/21+,WCP21+). Quantitative Fluorescent Polymerase Chain Reaction (QF-PCR) analysis revealed that isochromosome 21q was maternal in origin. After the detailed genetic counseling, the family decided termination of the pregnancy. This is the first report of co-existence of an isochromosome 21p and an isochromosome 21q in a case with Down syndrome. Our case shows the importance of the molecular cytogenetics and molecular genetic analysis in cases with isochromosomes of the acrocentric chromosomes and supernumerary marker chromosomes regarding to highlight of the formation mechanisms of co-existence of these two rearrangements.
- Published
- 2014
35. Absence of the SLC22A12 gene mutation in Turkish population with primary gout disease.
- Author
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Yakut S, Cetin Z, Arman M, Akbas H, Manguoglu AE, and Luleci G
- Subjects
- Adult, Female, Genetic Predisposition to Disease, Gout blood, Humans, Hyperuricemia blood, Male, Middle Aged, Turkey, Uric Acid blood, Gout genetics, Hyperuricemia genetics, Mutation, Organic Anion Transporters genetics, Organic Cation Transport Proteins genetics, Polymorphism, Single Nucleotide
- Abstract
The aim of the study was to examine whether SLC22A12 gene mutations might be influenced in primary gout disease. We included 32 patients with diagnosis of primary gout disease and 100 healthy volunteers. DNA was purified from peripheral blood, and all exons of the SLC22A12 gene were sequenced. We did not find any mutations in the SLC22A12 gene in all of the patients, but found 5 polymorphisms in exons 1 (g.T258C, g.C246T), 2 (g.C1246T) and 8 (g.T8011C) and in intron 9 (g.C8577T). However, we have not found any significant differences in the frequency of the individual genotypes between patients with primary gout disease and control group. In addition, the polymorphisms were not associated with hyperuricemia in our patients with primary gout disease. There was no previously reported mutation/polymorphisms of SLC22A12 gene in Turkish population. Our study is the first one in Turkish population and suggests that there is no association between primary gout disease and SLC22A12 gene polymorphisms. Sequence changes in the promotor and intronic regions of SLC22A12 gene should be investigated further with larger case groups.
- Published
- 2013
- Full Text
- View/download PDF
36. A 5q12.1-5q12.3 microdeletion in a case with a balanced exceptional complex chromosomal rearrangement.
- Author
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Cetin Z, Yakut S, Clark OA, Mihci E, Berker S, and Luleci G
- Subjects
- Abnormalities, Multiple genetics, Child, Preschool, Chromosome Deletion, Cytogenetic Analysis, Developmental Disabilities genetics, Follow-Up Studies, Humans, In Situ Hybridization, Fluorescence, Intellectual Disability genetics, Karyotyping, Male, Translocation, Genetic, Chromosome Aberrations, Chromosomes, Human, Pair 5 genetics, Gene Rearrangement
- Abstract
Complex chromosomal rearrangements are very rare chromosomal abnormalities. Individuals with a complex chromosomal rearrangement can be phenotypically normal or display a clinical abnormality. It is believed that these abnormalities are due to either microdeletions or microduplications at the translocation breakpoints or as a result of disruption of the genes located in the breakpoints. In this study we describe a 2-year-old child with mental retardation and developmental delay in whom a de novo apparently balanced exceptional complex chromosomal rearrangement was found through conventional cytogenetic analysis. Using both cytogenetic and FISH analysis, the patient's karyotype was found to be: 46,XY,der(5)t(5;7)(p15.1;7q34),t(5;8)(q13.1;8q24.1)dn. A large, clinically significant deletion which encompassed 887.69kb was detected at the 5q12.1-5q12.3 (chr5:62.886.523-63.774.210) genomic region using array-CGH. This deleted region includes the HTR1A and RNF180 genes. This is the first report of an individual with an apparently balanced complex chromosomal rearrangement in conjunction with a microdeletion at 5q12.1-5q12.3 in which there are both mental-motor retardation and dysmorphia., (Copyright © 2012 Elsevier B.V. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
37. Prenatal diagnosis of isolated ventriculomegaly as a second trimester manifestation of de novo terminal 6q25 deletion.
- Author
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Cetin Z, Sanhal C, Guzel BN, Toru S, and Yakut S
- Subjects
- Adult, Female, Humans, Hydrocephalus pathology, Pregnancy, Pregnancy Trimester, Second, Young Adult, Aborted Fetus pathology, Chromosome Deletion, Chromosomes, Human, Pair 6 genetics, Hydrocephalus genetics, Prenatal Diagnosis
- Published
- 2013
38. Exceptional complex chromosomal rearrangement and microdeletions at the 4q22.3q23 and 14q31.1q31.3 regions in a patient with azoospermia.
- Author
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Yakut S, Cetin Z, Clark OA, Usta MF, Berker S, and Luleci G
- Subjects
- Abnormal Karyotype, Adult, Chromosomes, Human, Pair 1, Chromosomes, Human, Pair 10, Chromosomes, Human, Y, Comparative Genomic Hybridization, Humans, Male, Azoospermia genetics, Chromosome Aberrations, Chromosome Deletion, Chromosomes, Human, Pair 14, Chromosomes, Human, Pair 4, Translocation, Genetic
- Abstract
In this report we describe the first patient ever found to have azoospermia in association with both exceptional complex chromosomal rearrangements and microdeletions at two translocation breakpoints. A 36-year-old male who had been suffering from male factor infertility was admitted to our clinic. The patient also displayed mild dysmorphia. An analysis of the patient's semen revealed azoospermia. GTG banding revealed the presence of an exceptional complex chromosomal rearrangement involving chromosomes 1, 4, 10 and 14. Using subtelomeric FISH analysis, the patient's karyotype was designated as 46,XY,t(1;10)(q43q44;q21q26.1)(CEB108/T7+,D1S3738-;10PTEL006+,D10S2290+, D1S3738+), ins(14;4) (q31.3;q23q33)(D14S1420+; D4S3359+, D4S2930+). Array-CGH analysis revealed two microdeletions at the 4q22.3q23 and 14q31.1q31.3 chromosomal regions. We suggest that microdeletions at the 4q22.3q23 and 14q31.1q31.3 chromosomal regions associated with both an exceptional complex chromosomal rearrangement and the Homo sapiens chromosome 4 open reading frame 37 (C4orf37) gene located at the 4q22.3q23 region might be associated with male factor infertility., (Copyright © 2012 Elsevier B.V. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
39. A patient with Down syndrome with a de novo derivative chromosome 21.
- Author
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Cetin Z, Yakut S, Mihci E, Manguoglu AE, Berker S, Keser I, and Luleci G
- Subjects
- Chromosome Banding, Chromosome Breakage, Comparative Genomic Hybridization, DNA-Binding Proteins, Humans, In Situ Hybridization, Fluorescence, Infant, Intracellular Signaling Peptides and Proteins genetics, Karyotyping, Male, Muscle Proteins genetics, Phenotype, Protein Serine-Threonine Kinases genetics, Protein-Tyrosine Kinases genetics, Trisomy, Dyrk Kinases, Chromosomes, Human, Pair 21 genetics, Down Syndrome genetics
- Abstract
Pure partial trisomy of chromosome 21 is a rare event. The patients with this aberration are very important for setting up precise karyotype-phenotype correlations particularly in Down syndrome phenotype. We present here a patient with Down syndrome with a de novo derivative chromosome 21. Karyotype of the patient was designated as 46,XY,der(21)(p13)dup(21)(q11.2q21.3)dup(21)(q22.2q22.3) with regard to cytogenetic, FISH and array-CGH analyses. Non-continuous monosomic, disomic and trisomic chromosomal segments through the derivative chromosome 21 were detected by array-CGH analysis. STR analyses revealed maternal origin of the de novo derivative chromosome 21. The dual-specificity tyrosine (Y)-phosphorylation regulated kinase 1A (DYRK1A) and Down Syndrome Critical Region 1 (DSCR1) genes that are located in Down syndrome critical region, are supposed to be responsible for most of the clinical findings of Down syndrome. However, our patient is the first patient with Down syndrome whose clinical findings were provided in detail, with a de novo derivative chromosome 21 resulting from multiple chromosome breaks excluding DYRK1A and DSCR1 gene regions., (Copyright © 2012 Elsevier B.V. All rights reserved.)
- Published
- 2012
- Full Text
- View/download PDF
40. Aberrations of chromosomes 9 and 22 in acute lymphoblastic leukemia cases detected by ES-fluorescence in situ hybridization.
- Author
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Cetin Z, Yakut S, Karadogan I, Kupesiz A, Timuragaoglu A, Salim O, Tezcan G, Alanoglu G, Ozbalci D, Hazar V, Yesilipek MA, Undar L, Luleci G, and Berker S
- Subjects
- Adolescent, Adult, Aged, Child, Child, Preschool, Female, Fusion Proteins, bcr-abl genetics, Humans, Infant, Male, Middle Aged, Trisomy, Young Adult, Chromosome Aberrations, Chromosomes, Human, Pair 22 genetics, Chromosomes, Human, Pair 9 genetics, In Situ Hybridization, Fluorescence methods, Precursor Cell Lymphoblastic Leukemia-Lymphoma genetics
- Abstract
A reciprocal translocation between chromosomes 9 and 22 creates oncogenic BCR/ABL fusion in the breakpoint region of the derivative chromosome 22. The aim of this study was to evaluate the importance of atypical fluorescence in situ hybridization (FISH) signal patterns in pediatric and adult acute lymphoblastic leukemia (ALL) cases. We evaluated t(9;22) translocation in 208 cases with ALL (294 tests), including 139 childhood and 69 adult cases by FISH technique using BCR/ABL extra signal (ES) probe. FISH signal patterns observed in pediatric ALL cases were as follows; Major-BCR/ABL (M-BCR/ABL) (1.4%), minor-BCR/ABL (m-BCR/ABL) (3.6%), trisomy 9 (4.3%), trisomy 22 (4.3%), trisomy or tetrasomy of both chromosomes 9 and 22 (2.9%), monosomy 9 (1.4%), monosomy 22 (0.7%), ABL gene amplification (1.4%), derivative chromosome 9 deletion (1.4%), and extra copies of the Philadelphia chromosome (1.4%). FISH signal patterns observed in adult ALL cases were as follows; M-BCR/ABL (5.8%), m-BCR/ABL (11.6%), two different cell clones with major and minor BCR/ABL signal pattern (2.9%), extra copies of Philadelphia chromosome (4.3%), derivative chromosome 9 deletion (1.4%), trisomy 9 (2.9%), tetraploidy (1.4%), monosomy 9 (1.4%), trisomy 22 (1.4%), and coexistence of both trisomy 22 and monosomy 9 (1.4%). Trisomy 9, trisomy 22, and polyploidy of chromosomes 9 and 22 were specific atypical FISH signal patterns for childhood B cell acute lymphoblastic leukemia (B-ALL) patients. However, monosomy 9 and ABL gene amplification were highly specific for childhood T cell acute lymphoblastic leukemia (T-ALL) patients. Our report presents the correlation between atypical FISH signal patterns and clinical findings of a large group of ALL cases.
- Published
- 2012
- Full Text
- View/download PDF
41. Pure and complete 12p trisomy due to a maternal centric fission of chromosome 12.
- Author
-
Cetin Z, Mihci E, Yakut S, Keser I, Karauzum SB, and Luleci G
- Subjects
- Chromosomes, Human, Pair 12 genetics, Female, Humans, In Situ Hybridization, Fluorescence, Infant, Trisomy genetics, Trisomy pathology, Abnormalities, Multiple genetics, Centromere pathology, Psychomotor Disorders genetics
- Abstract
Pure and complete 12p trisomy are rare. Here, we report on a unique patient with trisomy 12p syndrome due to centric fission of maternal chromosome 12. Conventional cytogenetic and fluorescence in situ hybridization (FISH) techniques revealed the proposita's karyotype to be 47,XX,+fis(12)(p10)mat whereas the maternal one was 47,XX,-12,+fis(12)(p10),+fis(12) (q10). This is the first report on centric fission of chromosome 12 leading to stable telocentrics, each with a fully functional centromere. Our observation shows that the centric fission of chromosome 12 can be a new mechanism for generation of a partial centromere and trisomy 12p syndrome., (Copyright © 2011 Wiley-Liss, Inc.)
- Published
- 2011
- Full Text
- View/download PDF
42. Del (18p) syndrome with increased nuchal translucency revealed in prenatal diagnosis.
- Author
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Yakut S, Simsek M, Pestereli HE, Baumer A, Luleci G, and Schinzel A
- Subjects
- Adult, Amniocentesis, Chromosome Deletion, Chromosome Disorders diagnosis, Chromosomes, Human, Pair 18 diagnostic imaging, Female, Humans, Pregnancy, Pregnancy Trimester, First, Chromosome Disorders diagnostic imaging, Nuchal Translucency Measurement
- Published
- 2011
43. Interstitial deletion of 13q22-q32: a case with choanal atresia and mega-cisterna magna and review of the literature.
- Author
-
Cetin Z, Mihci E, Yakut S, Karaali K, Luleci G, and Keser I
- Subjects
- Humans, Infant, Male, Abnormalities, Multiple genetics, Choanal Atresia genetics, Chromosome Deletion, Chromosomes, Human, Pair 13, Cisterna Magna abnormalities
- Published
- 2011
44. De novo supernumerary marker chromosome originating from chromosome 17 resulting in a normal pregnancy outcome.
- Author
-
Yakut S, Cetin Z, Berker-Karauzum S, Mihci E, Mendilcioglu I, and Luleci G
- Subjects
- Adult, Chromosome Banding, Comparative Genomic Hybridization, Female, Follow-Up Studies, Genetic Counseling, Humans, In Situ Hybridization, Fluorescence, Infant, Infant, Newborn, Pregnancy, Amniocentesis, Chromosome Aberrations, Chromosomes, Human, Pair 17 genetics
- Abstract
We report here a prenatal case with de novo supernumerary marker chromosome originating from chromosome 17 in non-mosaic form resulting in normal pregnancy outcome. In this case, a 26-year-old pregnant woman was referred for amniocenthesis and microdeletion Fluorescence In Situ Hybridization (FISH) testing at 18 weeks of gestation due to history of a previous child with Angelman Syndrome. PWS/AS region deletion was excluded by FISH. A de novo supernumerary, non-satellited, monocentric marker chromosome was detected during conventional cytogenetic analysis. With the use of FISH testing, it was found that the marker chromosome originated from chromosome 17. Additionally, the marker chromosome was found not to contain the Smith-Magenis and Miller Dieker syndrome regions. After detailed review of the literature, genetic counseling was given to the family, and the family decided to continue the pregnancy to term. A female child was born at term without any phenotypical abnormalities and clinical complications. Follow-up at 15 months-of-age revealed no developmental abnormalities. To our knowledge, our patient is the first reported prenatal case with a de novo monocentric, supernumerary marker chromosome derived from chromosome 17 in a non-mosaic form that resulting in normal pregnancy outcome.
- Published
- 2011
45. Prenatal diagnosis of β-thalassemia and other hemoglobinopathies in southwestern Turkey.
- Author
-
Mendilcioglu I, Yakut S, Keser I, Simsek M, Yesilipek A, Bagci G, and Luleci G
- Subjects
- Amniocentesis, Anemia, Sickle Cell diagnosis, Anemia, Sickle Cell epidemiology, Chorionic Villi Sampling, Codon, Cordocentesis, Cytogenetic Analysis, Female, Fetus, Genetic Testing, Humans, Mutation, Pregnancy, Prenatal Diagnosis methods, Turkey, beta-Thalassemia diagnosis, beta-Thalassemia epidemiology, Anemia, Sickle Cell genetics, Hemoglobin, Sickle genetics, beta-Globins genetics, beta-Thalassemia genetics
- Abstract
Our aim was to evaluate the prenatal diagnosis of β-thalassemia (β-thal) and other hemoglobinopathies in a region with high frequency. After detection by premarital or antenatal screening, 312 patients underwent 420 prenatal diagnostic procedures for 407 fetuses in a 10-year period. Fetal samples were collected by chorionic villi sampling (CVS) in the first trimester and amniocentesis and cordocentesis in the second trimester. Mutation analyses of β-globin and cytogenetic analyses were performed and the most common mutations detected were: IVS-I-110 (G>A), IVS-II-1 (G>A), IVS-I-6 (T>C) and IVS-II-745 (C>G). Hb S [β6(A3)Glu→Val, GAG>GTG)] was the most common hemoglobin (Hb) variant with a frequency of 6.3%. Among 407 fetuses, 105 (25.8%) were diagnosed as affected, while 201 (49.4%) were carriers and 101 (24.8%) were normal. Cytogenetic analyses revealed nine fetuses (2.3%) with numerical chromosomal abnormalities as regular or mosaicism. Prenatal diagnosis of common hemoglobinopathies is safe and effective. Performing cytogenetic analysis in excess fetal material is an acceptable option.
- Published
- 2011
- Full Text
- View/download PDF
46. Prenatal diagnosis of a de novo supernumerary marker chromosome originating from chromosome 16.
- Author
-
Yakut S, Cetin Z, Simşek M, Karaüzüm SB, Tükün A, and Lüleci G
- Subjects
- Adult, Comparative Genomic Hybridization, Female, Humans, Pregnancy, Spectral Karyotyping, Amniocentesis, Chromosome Aberrations, Chromosomes, Human, Pair 16 genetics, Genetic Counseling, Genetic Markers
- Abstract
Prenatal diagnosis of a de novo supernumerary marker chromosome originating from chromosome 16: A 37 year old pregnant woman was referred for amniocentesis at 18 weeks of gestation due to advanced maternal age and abnormal serum biochemistry. A nonsatellited, monocentric marker chromosome was observed with a frequency of 57% in cultured amniocytes. Parental karyotypes were normal. The marker chromosome was found to be derived from chromosome 16 by FISH using CEP16 and WCP16 probes. Marker chromosomes were not painted with M-FISH probe mixture, indicating an exclusively heterochromatin nature. CGH analysis using genomic DNA isolated from uncultured amniocytes also supported the M-FISH results. Genetic counseling was given to parents and the family decided to continue the pregnancy to term. The baby was born at 36 weeks of gestation without any dysmorphic features. Follow-up at 7 months of age revealed no developmental abnormalities.
- Published
- 2009
47. Maternal origin and clinical findings in a case with trisomy 22.
- Author
-
Mihçi E, Taçoy S, Yakut S, Ongun H, Keser I, Kiliçarslan B, Bağci G, and Lüleci G
- Subjects
- Fatal Outcome, Female, Humans, Infant, Newborn, Trisomy diagnosis, Trisomy genetics, Abnormalities, Multiple, Chromosomes, Human, Pair 22, Trisomy physiopathology
- Abstract
We report a newborn girl with multiple congenital anomalies whose chromosomal analysis showed complete trisomy 22. Her phenotype included microcephaly, epicanthus, hypertelorism, micrognathia, cleft palate, microtia, and preauricular tag. She died in the 24th post-natal hour. Trisomy 22 was shown by fluorescence in situ hybridization technique and the parental origin of the extra chromosome was found to be maternal by DNA microsatellite marker analysis of chromosome 22. Postmortem examination revealed the presence of atrioseptal defect and stasis in the biliary canals. We believe that this patient will contribute to the literature both by clinical findings and short life span associated with maternal origin of extra chromosome 22.
- Published
- 2007
48. An unusual case of chromosome 22q11 deletion syndrome with psychiatric disorder, hypoparathyroidism and precocious puberty.
- Author
-
Karagüzel G, Akçurin S, Yakut S, and Bircan I
- Subjects
- Brain diagnostic imaging, Calcium blood, Calcium Gluconate therapeutic use, Child, Humans, Hypoparathyroidism physiopathology, Hypoparathyroidism psychology, Luteinizing Hormone blood, Male, Mental Disorders physiopathology, Mental Disorders psychology, Puberty, Precocious physiopathology, Puberty, Precocious psychology, Schizophrenia etiology, Tomography, X-Ray Computed, Chromosome Deletion, Chromosomes, Human, Pair 21 genetics, Hypoparathyroidism genetics, Mental Disorders genetics, Puberty, Precocious genetics
- Abstract
Deletions of chromosome 22q11 cause a wide range of phenotypes; even affected members from the same family may present with different phenotype. We present an 11-3/12 year-old boy who has 22q11 deletion in a hitherto unreported combination with psychiatric disorder, hypoparathyroidism and precocious puberty. Whether precocious puberty is a clue for chromosome 22q11 deletion syndrome is also discussed.
- Published
- 2006
- Full Text
- View/download PDF
49. Novel cytogenetic findings revealed by conventional cytogenetic and FISH analyses in leukaemia patients.
- Author
-
Karauzum SB, Bilgen T, Karadogan I, Yakut S, Cetin Z, Ugur A, and Luleci G
- Subjects
- Adult, Aged, Bone Marrow Cells, Cytogenetic Analysis, Female, Humans, In Situ Hybridization, Fluorescence, Karyotyping, Male, Middle Aged, Leukemia genetics, Translocation, Genetic
- Abstract
Aim: To describe novel cytogenetic findings in four leukaemia patients., Methods: Conventional cytogenetic (CC) and fluorescence in situ hybridization (FISH) analyses were performed on bone marrow samples of four leukaemia patients., Results: In this study, t(3;10)(q11;q25) and t(2;22)(p21;q11.2) were detected as novel translocations. t(8;16;21)(q22.1;q13;q22) and t(1;6;9;22)(p36.1;p21.3;q34;q11) were found as variant translocations, and these variant translocations were confirmed by Interphase-FISH and Multi-colour-FISH., Conclusion: Newly identified cytogenetic findings can lead us to characterize cytogenetic evolution of the haematological malignancies. Further investigations are certainly warranted to resolve the prognostic impact of these new cytogenetic abnormalities.
- Published
- 2005
50. M-FISH applications in clinical genetics.
- Author
-
Cetin Z, Berker Karaüzüm S, Yakut S, Mihçi E, Baumer A, Wey E, Taçoy S, Bağci G, and Lüleci G
- Subjects
- Adult, Child, Preschool, Chromosomes, Human, Pair 15 genetics, Chromosomes, Human, Pair 18 genetics, Chromosomes, Human, Pair 20 genetics, Chromosomes, Human, Pair 8 genetics, Chromosomes, Human, Pair 9 genetics, Cytogenetics, Female, Humans, Infant, Karyotyping, Male, Parents, In Situ Hybridization, Fluorescence methods, Trisomy genetics
- Abstract
Until recently, presence of de novo marker or derivative chromosomes was quite problematic for genetic counseling especially in prenatal diagnosis, because characterization of marker and derivative chromosomes by conventional cytogenetic techniques was nearly impossible. However, recently developed molecular cytogenetic technique named Multicolor Fluorescence in Situ Hybridization (M-FISH) which paints all human chromosomes in 24 different colors allows us to characterize marker and derivative chromosomes in a single hybridization. In this study, we applied M-FISH to determine the origin of 3 marker and 3 derivative chromosomes. Marker chromosomes were found to originate from chromosome 15 in two postnatal and one prenatal case. Of these, one of the postnatal cases displayed clinical findings of inv dup (115) syndrome and the other of infertility, and the prenatal case went through amniocentesis due to the triple test results. Karyotypes of the patients with derivative chromosomes were designated as 46,XY,der (21)t(1;21)(q32;p11), 46,XX,der(8)t(8;9)(p23;p22) and 46,XX,der(18)t(18;20)(q32;p11.2) according to cytogenetic and M-FISH studies. All of the M-FISH results were confirmed with locus specific or whole chromosome painting probes. The case with der (8)t(8;9) had trisomy 9(p22-pter) and monosomy 8(p23-pter) due to this derivative chromosome. The case with der(18)t(18;20) had trisomy 20(p11.2-pter) and monosomy 18(q32-qter). Parental origins of the derivative chromosomes were analyzed using microsatellite markers located in the trisomic chromosomal segments. Patients' clinical findings were compared with the literature.
- Published
- 2005
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