Search

The ability to induce a defense response after pathogen attack is a critical feature of the immune system of any organism. Nucleotide-binding leucine-rich repeat receptors (NLRs) are key players in this process and perceive the occurrence of nonself-activities or foreign molecules. In plants, coevolution with a variety of pests and pathogens has resulted in repertoires of several hundred diverse NLRs in single individuals and many more in populations as a whole. However, the mechanism by which defense signaling is triggered by these NLRs in plants is poorly understood. Here, we show that upon pathogen perception, NLRs use their N-terminal domains to transactivate other receptors. Their N-terminal domains homo- and heterodimerize, suggesting that plant NLRs oligomerize upon activation, similar to the vertebrate NLRs; however, consistent with their large number in plants, the complexes are highly heterometric. Also, in contrast to metazoan NLRs, the N-terminus, rather than their centrally located nucleotide-binding (NB) domain, can mediate initial partner selection. The highly redundant network of NLR interactions in plants is proposed to provide resilience to perturbation by pathogens.

Lettuce (Lactuca sativa) is a major crop and a member of the large, highly successful Compositae family of flowering plants. Here we present a reference assembly for the species and family. This was generated using whole-genome shotgun Illumina reads plus in vitro proximity ligation data to create large superscaffolds; it was validated genetically and superscaffolds were oriented in genetic bins ordered along nine chromosomal pseudomolecules. We identify several genomic features that may have contributed to the success of the family, including genes encoding Cycloidea-like transcription factors, kinases, enzymes involved in rubber biosynthesis and disease resistance proteins that are expanded in the genome. We characterize 21 novel microRNAs, one of which may trigger phasiRNAs from numerous kinase transcripts. We provide evidence for a whole-genome triplication event specific but basal to the Compositae. We detect 26% of the genome in triplicated regions containing 30% of all genes that are enriched for regulatory sequences and depleted for genes involved in defence.

Modifications of plant immune complexes by secreted pathogen effectors can trigger strong immune responses mediated by the action of nucleotide binding-leucine-rich repeat immune receptors. Although some strains of the pathogen Pseudomonas syringae harbor effectors that individually can trigger immunity, the plant's response may be suppressed by other virulence factors. This work reveals a robust strategy for immune suppression mediated by HopZ3, an effector in the YopJ family of acetyltransferases. The suppressing HopZ3 effector binds to and can acetylate multiple members of the RPM1 immune complex, as well as two P. syringae effectors that together activate the RPM1 complex. These acetylations modify serine, threonine, lysine, and/or histidine residues in the targets. Through HopZ3-mediated acetylation, it is possible that the whole effector-immune complex is inactivated, leading to increased growth of the pathogen.

The experimental induction of RNA silencing in plants often involves expression of transgenes encoding inverted repeat (IR) sequences to produce abundant dsRNAs that are processed into small RNAs (sRNAs). These sRNAs are key mediators of post-transcriptional gene silencing (PTGS) and determine its specificity. Despite its application in agriculture and broad utility in plant research, the mechanism of IR-PTGS is incompletely understood. We generated four sets of 60 Arabidopsis plants, each containing IR transgenes expressing different configurations of uidA and CHALCONE Synthase (At-CHS) gene fragments. Levels of PTGS were found to depend on the orientation and position of the fragment in the IR construct. Deep sequencing and mapping of sRNAs to corresponding transgene-derived and endogenous transcripts identified distinctive patterns of differential sRNA accumulation that revealed similarities among sRNAs associated with IR-PTGS and endogenous sRNAs linked to uncapped mRNA decay. Detailed analyses of poly-A cleavage products from At-CHS mRNA confirmed this hypothesis. We also found unexpected associations between sRNA accumulation and the presence of predicted open reading frames in the trigger sequence. In addition, strong IR-PTGS affected the prevalence of endogenous sRNAs, which has implications for the use of PTGS for experimental or applied purposes.

We have generated an ultra-high-density genetic map for lettuce, an economically important member of the Compositae, consisting of 12,842 unigenes (13,943 markers) mapped in 3696 genetic bins distributed over nine chromosomal linkage groups. Genomic DNA was hybridized to a custom Affymetrix oligonucleotide array containing 6.4 million features representing 35,628 unigenes of Lactuca spp. Segregation of single-position polymorphisms was analyzed using 213 F7:8 recombinant inbred lines that had been generated by crossing cultivated Lactuca sativa cv. Salinas and L. serriola acc. US96UC23, the wild progenitor species of L. sativa The high level of replication of each allele in the recombinant inbred lines was exploited to identify single-position polymorphisms that were assigned to parental haplotypes. Marker information has been made available using GBrowse to facilitate access to the map. This map has been anchored to the previously published integrated map of lettuce providing candidate genes for multiple phenotypes. The high density of markers achieved in this ultradense map allowed syntenic studies between lettuce and Vitis vinifera as well as other plant species.

The development of varieties with strong tolerance is one of the important strategies to diminish the negative impact of chilling stress during heading on the spikelet fertility and yield formation of late-season rice. However, whether such genetic improvement has been made in inbred late rice lines in China is not clear. In the present study, three late-season inbred rice varieties, Xiangwanxian2 (XWX2, released in 1988), Xiangwanxian8 (XWX8, released in 1998) and Xiangwanxian17 (XWX17, released in 2008) were subjected to moderate (20 °C) and extreme (17 °C) chilling stress during heading, and the grain yield components and flowering-related traits of the three varieties in response to different temperature were investigated. The results showed that the newly released inbred late rice variety XWX17, demonstrated better chilling tolerance during heading than the early released varieties with respect to higher grain filling percentage. The improved grain filling percentage in XWX17 might be the results of increased spikelet fertility, which was attributed to the increase in pollen viability, anther dehiscence length and anther volume. In addition, the SPAD value and the chlorophyll a content of the flag leaf can be used as indicators to predict the rice spikelet fertility when suffering from chilling stress during heading. The present study provides evidence that the genetic approach has been made to improve the chilling tolerance of inbred late rice lines during heading; however, further research is needed to explore the physiological and molecular mechanism underlying the relationship between leaf characteristics and function with rice spikelet fertility. [ABSTRACT FROM AUTHOR]

No-tillage (NT) management is considered a leading approach for sustaining crop production and improving soil and environmental quality. Based on a long-term no-tillage experiment in a rice–oilseed rape cropping system, we examined differences in soil organic matter (SOM), soil microbial carbon (C) and nitrogen (N) content, and methane (CH4) and carbon dioxide (CO2) fluxes between NT and conventional tillage (CT) management. SOM under NT was 21.0 g kg–1, and a significant difference was detected between 2004 and 2016. SOM increased under NT and CT by averages of 0.60 and 0.32 g kg–1 year–1, respectively. Soil microbial C and N content were higher under CT than under NT. However, soil C:N ratios under NT were 17.4 and 9.7% higher than the CT, respectively, whereas soil microbial C:N ratios under NT were on average 9.47 and 9.70% higher. In addition, about 70% of CO2 net uptake and over 99% of net CH4 emissions occurred during the rice season in May–September in the rice–oilseed rape cropping system. Annual cumulative CH4 and daytime net ecosystem CO2 exchange (NEE) under NT was 1813.9 g CO2 equiv. m–2, 10.8% higher than that under CT. Our results suggest that a higher soil microbial C:N ratio and NEE (CH4 and daytime CO2) could contribute to increasing SOM/C in the surface soil under NT management. [ABSTRACT FROM AUTHOR]

Rice–duck farming is a sustainable food system that provides rice and duck meat and eggs. Excessive application of commercial feedstuff for ducks weakens the sustainability of rice–duck farming. This study aims to investigate green forage (Lolium multiflorumLam.) as a substitute for commercial grain mix, to attain a maximum economic benefit and pollution-free production in rice–duck farming. The effects of a mixed feedstuff of green forage and commercial grain mix with a stable ratio of 1:4 (MFSR), mixture feedstuff of green forage and commercial grain mix with dynamic ratios (MFDR), and full commercial grain mix (FCGM) were studied. Results showed that Cherry Volley and hybrid ducks were more adaptable to mixed feedstuff than Mud ducks. Growth of ducks was classified into rapid, slow and steady-growth stages. The weight, body length, neck length, and chest circumference of ducks that were fed MFDR were only slightly decreased. The carcass weight, eviscerated weight, and semi-eviscerated weight of ducks fed MFDR were similar to those fed FCGM. MFDR significantly decreased duck fat accumulation. MFDR did not have negative impacts on the agronomic traits of rice yields. Duck profits per 667 m2were calculated as CNY (Chinese Yuan) 254.91 (MFSR), CNY309.27 (MFDR), and CNY39.36 (FCGM). MFDR effectively improved the rice–duck farming. [ABSTRACT FROM PUBLISHER]

Acid rain is one of the most serious ecological and environmental problems worldwide. This study investigated the impacts of simulated acid rain (SAR) upon leaching of trace metals and aluminum (Al) from a soil. Soil pot leaching experiments were performed to investigate the impacts of SAR at five different pH levels (or treatments) over a 34-day period upon the release of trace metals (i.e., Cu, Ni, Pb, Zn, and Fe) and Al from the Latosol (acidic red soil). The concentrations of trace metals in the effluent increased as the SAR pH level decreased, and were highest at the SAR pH = 2.0. In general, the concentrations of Cu, Pb, Fe, and Al in the effluent increased with leaching time at the SAR pH = 2.0, whereas the concentrations of Zn, Fe, and Al in the effluent decreased with leaching time at the SAR pH ≥ 4.0. The increase in electrical conductivity (EC) with leaching time at five different SAR pH levels was primarily due to the concentrations of Al and Fe in the effluent. There were good linear correlations between the effluent Al concentrations and the effluent pH at the SAR pH = 2.0 (R2= 0.87) and pH = 3.0 (R2= 0.83). More soil trace metals and Al were activated and released into the soil solution as the SAR pH level decreased. [ABSTRACT FROM PUBLISHER]

Tea plants are important economic perennial crops that can be negatively impacted by drought stress (DS). However, their survival strategies in long-term DS conditions and the accumulation and influence of metabolites and mineral elements (MEs) in their organs, when facing hydraulic vulnerability segmentation, require further investigation. The MEs and metabolites in the leaf, stem, and root after long-term DS (20 d) were examined here, using inductively coupled plasma optical emission spectrometry (ICP-OES) and liquid chromatograph-mass spectrometry (LC-MS). The accumulation patterns of 116 differentially accumulated metabolites (DAMs) and nine MEs were considerably affected in all organs. The concentration of all MEs varied significantly in at least one organ, while the K and Ca levels were markedly altered in all three. Most DAM levels increased in the stem but decreased in the root and leaf, implying that vulnerability segmentation may occur with long-term DS. The typical nitrogen- and carbon-compound levels similarly increased in the stem and decreased in the leaf and root, as the plant might respond to long-term DS by stabilizing respiration, promoting nitrogen recycling, and free radical scavenging. Correlation analysis showed several possible DAM-ME interactions and an association between Mn and flavonoids. Thus, survival strategies under long-term DS included sacrificing distal/vulnerable organs and accumulating function-specialized metabolites and MEs to mitigate drought-induced oxidative damage. This is the first study that reports substance fluctuations after long-term DS in different organs of plants, and highlights the need to use whole plants to fully comprehend stress response strategies. Image 1 • Tea plants adopt a drought survival strategy for long-term drought stress. • They sacrifice vulnerable organs to improve resistance in the stem. • They accumulate substances in the stem to facilitate rapid recovery. • Specialized metabolite and mineral element accumulation mitigates oxidative damage. [ABSTRACT FROM AUTHOR]

• The number of organic phosphate-solubilizing bacteria (PSB) increased with soil TP. • The number of phosphate-solubilizing fungi (PSF) increased with soil carbon content. • The ability to solubilize phosphate was organic PSB > PSF > inorganic PSB. • The organic PSB was the best bacterial group to solubilize phosphate. Some soil bacteria and fungi are known to solubilize phosphates and play an important role in supplying phosphorus (P) to plants. In this study, we characterized the phosphate-solubilizing bacteria and fungi as well as P availability in latosols from southern China under different land use practices. Three different latosols (i.e., red soil, lateritic red soil and laterite red soil), each with four different land uses (i.e., agricultural land, grass land, forest land and orchard land), from Guangdong Province, China, were chosen to determine the amounts of phosphate-solubilizing bacteria (PSB) and phosphate-solubilizing fungi (PSF) and their phosphate solubilizing abilities. Our results show that the amount of available P (AP) increased with the amount of PSB favored in solubilizing organic P (or PSBop), while the amount of PSF increased with the content of soil organic carbon (SOC). The average rates of phosphate solubilization were 28.23% for PSBop, 6.97% for PSF, and 0.16% for PSBip (PSB favored in solubilizing inorganic P). An increase in soil pH decreased the ability of PSB to solubilize phosphate in latosols. This ability occurred in the following order: PSBop > PSF > PSBip. No significant difference in the amount of PSF was observed among the four different land uses for the lateritic red soil and laterite red soil, whereas a profound significant difference was found for the red soil, with the highest number of PSF in the grass land. Reasonable linear correlations between the PSB and the AP and between the PSF and the SOC were obtained and could provide a good reference to characterize soil PSB and PSF. Additionally, PSBop was the best bacterial species to solubilize phosphate in the latosols. [ABSTRACT FROM AUTHOR]

• Winter cover crops with chicken grazing increased nitrogen contents in soils and nitrogen transfer. • Winter cover crops with chicken grazing increased straw biomass and grain yield. • Winter cover crops with chicken grazing increased economic profits. Winter fallow is important for renewing and improving soil fertility under double-cropping rice systems, such as those in southern China. Using a regenerative farming technology of integrating grass-chicken farming in a winter fallow field, we investigated soil nitrogen conversion and assessed the agricultural economic benefits of the whole farmland ecosystem. To test the effects of chicken grazing on the fallow system, we established field treatments involving adding chickens to a field planted with the cover crops, including cover milk vetch (Astragalus sinicus) with chicken grazing treatment (MC) and cover ryegrass (Lolium spp.) with chicken grazing (RC); cover crops only, including cover milk vetch (Astragalus sinicus) treatment (M) and cover ryegrass (Lolium spp.) (R); and a bare fallow field treatment (CK). We found that both cover crops (M and R) and cover crops with chicken grazing (MC and RC) increased nitrate, ammonium, dissolved organic nitrogen, and total nitrogen contents, and the increase was higher in MC and RC treatments. We also observed increased straw biomass and grain yield in the all four treatments, with more increases with chicken treatments as compared with CK. On the economic profits, MC increased by 101.72% and RC increased by 104.12% as compared with CK, while R increased by 5.19% and M reduced by 1.86% as compared with CK. The nitrogen transfer rate (the output/input ratio) of MC, RC, M, and R increased by 66.71%, 71.50%, 65.97%, and 59.97%, respectively, while the nitrogen accumulation rate (input–output) of MC, RC, M, and R increased by 480.56%, 612.98%, 356.74%, and 267.65%, respectively. Our study demonstrates that retaining nitrogen and gaining economic profit by integrating cover crops with chicken grazing is potentially more sustainable than adding cover crops alone. We further suggest that using the integrated grass-livestock farming technology can reduce environmental damage caused by commercial fertilizers. [ABSTRACT FROM AUTHOR]

The combined application of chemical and organic fertilizers has been recognized to enhance soil fertility and foster the soil microbial ecosystem. However, the optimal ratio of chemical and organic fertilizers in oilseed rape cultivation is still uncertain, and the role of rhizosphere effect is still unclear. Thus, this study aimed to elucidate the impacts of varying ratios of chemical and organic fertilizers on the structure and potential functionalities of rhizosphere and non-rhizosphere soil microbial communities. The interplay of microbial communities with soil properties and oilseed rape root exudates was investigated in controlled pot cultivations receiving varying ratios of chemical and organic fertilizers. Results indicated clear segregation in the soil bacterial community, influenced by both fertilization treatments and rhizosphere effects. The bacterial community structure significantly correlated with nitrate nitrogen, organic acids, and dissolved organic carbon (DOC) content. Rhizosphere effects led to increased bacteria abundance, reduced diversity, and decreased network stability. Notably, F3 treatment receiving 25% chemical and 75% organic fertilizers showed a significantly higher abundance at 1.43 × 10 11 copies g -1 dry soil, accompanied by increased species and genetic diversity, and ecological network complexity. This treatment also yielded the highest aboveground biomass of oilseed rape. However, the application of organic fertilizers also increased the risk of plant pathogenicity. This study reveals the impact of fertilizers and rhizosphere effects on soil microbial community structure and function, shedding light on the establishment of more effective fertilization schemes for oilseed rape agriculture., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Wang, Qin, Zhang, Tang, Long, Xu and Zhu.)