27 results on '"Volkov DS"'
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2. Noise Filtering Algorithm Using Gaussian Mixture Models for High-Resolution Mass Spectra of Natural Organic Matter.
- Author
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Potemkin AA, Proskurnin MA, and Volkov DS
- Abstract
High-resolution mass spectra of natural organic matter (NOM) contain a large number of noise signals. These signals interfere with the correct molecular composition estimation during nontargeted analysis because formula-assignment programs find empirical formulas for such peaks as well. Previously proposed noise filtering methods that utilize the profile of the intensity distribution of mass spectrum peaks rely on a histogram to calculate the intensity threshold value. However, the histogram profile can vary depending on the user settings. In addition, these algorithms are not automated, so they are handled manually. To overcome the mentioned drawbacks, we propose a new algorithm for noise filtering in mass spectra. This filter is based on Gaussian Mixture Models (GMMs), a machine learning method to find the intensity threshold value. The algorithm is completely data-driven and eliminates the need to work with a histogram. It has no customizable parameters and automatically determines the noise level for each individual mass spectrum. The algorithm performance was tested on mass spectra of natural organic matter obtained by averaging a different number of microscans (transients), and the results were compared with other noise filters proposed in the literature. Finally, the effect of this noise filtering approach on the fraction of peaks with assigned formulas was investigated. It was shown that there is always an increase in the identification rate, but the magnitude of the effect changes with the number of microscans averaged. The increase can be as high as 15%.
- Published
- 2024
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3. Humic Polyelectrolytes Facilitate Rapid Microwave Synthesis of Silver Nanoparticles Suitable for Wound-Healing Applications.
- Author
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Zhang Y, Larionov KS, Zhang S, Sobolev NA, Konstantinov AI, Volkov DS, Suslova EV, Chernov VE, Poloskov AI, Glushakov RI, and Perminova IV
- Abstract
This article describes the one-pot microwave synthesis of silver nanoparticles (AgNPs) assisted with natural polyelectrolytes-humic substances (HS). The humic polyelectrolytes served both as chemical reductants for silver ions and as end-capping agents for AgNPs. Three commercially available sodium humates extracted from lignites and leonardite and one sodium fulvate isolated from natural brown water seeped through peat deposits were used in this study. The dynamics of the growth rate of AgNPs was characterised by UV-VIS spectroscopy by measuring the intensity of surface plasmon resonance at 420 nm. Transmission electron microscopy was used to characterise the size and morphology of AgNPs. Dynamic light scattering was used to determine size distributions of the synthesised AgNPs in the solutions. It was established that both conventional and microwave syntheses assisted with the coal humates produced small-size AgNPs in the range from 4 to 14 nm, with the maximum share of particles with sizes of (6 ± 2) nm by TEM estimates. The peat fulvate yielded much larger NPs with sizes from 10 to 50 nm by TEM estimates. DLS measurements revealed multimodal distributions of AgNPs stabilised with HS, which included both single NPs with the sizes from 5 to 15 nm, as well as their dominating aggregates with sizes from 20 to 200 nm and a smaller portion of extra-large aggregates up to 1000 nm. The given aggregates were loosely bound by humic polyelectrolyte, which prevented the coalescence of AgNPs into larger particles, as can be seen in the TEM images. The significant acceleration in the reaction time-a factor of 60 to 70-was achieved with the use of MW irradiation: from 240 min down to 210-240 s. The coal humate stabilised AgNPs showed antimicrobial properties in relation to S. aureus. A conclusion was made regarding the substantial advantages of microwave synthesis in the context of time and scaling up for the large-scale production of AgNP-HS preparations with antimicrobial properties suitable for external wound-healing applications.
- Published
- 2024
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4. Yedoma Permafrost Releases Organic Matter with Lesser Affinity for Cu 2+ and Ni 2+ as Compared to Peat from the Non-Permafrost Area: Risk of Rising Toxicity of Potentially Toxic Elements in the Arctic Ocean.
- Author
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Sobolev NA, Larionov KS, Mryasova DS, Khreptugova AN, Volikov AB, Konstantinov AI, Volkov DS, and Perminova IV
- Abstract
Pollution of the Arctic Ocean by potentially toxic elements (PTEs) is a current environmental problem. Humic acids (HAs) play an important role in the regulation of PTE mobility in soil and water. The permafrost thaw releases ancient organic matter (OM) with a specific molecular composition into the Arctic watersheds. This could affect the mobility of PTEs in the region. In our study, we isolated HAs from two types of permafrost deposits: the Yedoma ice complex, which contains pristine buried OM, and the alas formed in the course of multiple thaw-refreezing cycles with the most altered OM. We also used peat from the non-permafrost region as the recent environmental endmember for the evolution of Arctic OM. The HAs were characterized using
13 C NMR and elemental analysis. Adsorption experiments were conducted to assess the affinity of HAs for binding Cu2+ and Ni2+ . It was found that Yedoma HAs were enriched with aliphatic and N-containing structures as compared to the much more aromatic and oxidized alas and peat HAs. The adsorption experiments have revealed that the peat and alas HAs have a higher affinity for binding both ions as compared to the Yedoma HAs. The obtained data suggest that a substantial release of the OM from the Yedoma deposits due to a rapid thaw of the permafrost might increase the mobility of PTEs and their toxicity in the Arctic Ocean because of much lesser "neutralization potential"., Competing Interests: The authors declare no conflict of interest.- Published
- 2023
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5. Infrared Spectroscopy in Aqueous Solutions: Capabilities and Challenges.
- Author
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Fomina PS, Proskurnin MA, Mizaikoff B, and Volkov DS
- Subjects
- Spectrophotometry, Infrared, Spectroscopy, Fourier Transform Infrared methods, Water chemistry
- Abstract
Fourier-transform infrared (FTIR) spectroscopy provides rapid, reliable, quantitative, and qualitative analysis of samples in different aggregation states, i.e., gases, thin films, solids, liquids, etc. However, when analyzing aqueous solutions, particular issues associated with the rather pronounced IR absorption characteristics of water appear to interfere with the solute determination. In this review, Fourier-transform infrared spectroscopic techniques and their analytical capabilities for analyzing aqueous solutions are reviewed, and highlight examples are discussed.
- Published
- 2023
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6. FTIR Photoacoustic and ATR Spectroscopies of Soils with Aggregate Size Fractionation by Dry Sieving.
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Krivoshein PK, Volkov DS, Rogova OB, and Proskurnin MA
- Abstract
Granulometric fractionation as a source of additional information on organic-matter and inorganic matrix components of soils using FTIR-photoacoustic spectroscopy (FTIR-PAS) supported by attenuated-total reflection FTIR spectroscopy (ATR-FTIR) for a wide range of aggregate fractions (10-5000 μm) was used to compare the sensitivity, reproducibility, information contents, and representativity of fractionated samples. For chernozem and sod-podzolic soils and different agricultural-use chernozem samples, differences in the composition were found, manifested in normalized spectra of microaggregate fractions, with the range of 10-100 μm bearing the complete information. Most changes are observed in the soil organic matter range (1900-1340 cm
-1 ), although these changes are slight, and in the soil-matrix region (550-300 cm-1 ). The latter region increases the intensity of bands corresponding to amorphous silica and clay minerals in fine fractions, while the intensity of bands attributed to quartz lattice vibrations decreases. FTIR-PAS spectra do not differ considerably at high interferometer modulation frequencies as the signal-penetration depth is comparable with particle sizes. The soil fractions below 20 μm result in the maximum sensitivity, reproducibility, and signal-to-noise ratio, showing no changes from coarser fractions by the information content and, thus, providing representative samples for analysis. The fractionation shows more differences in the sod-podzolic and chernozem soil fractions than the whole soil spectra. FTIR-PAS provides better sensitivity and reproducibility in the 4000-2000 cm-1 region and ATR-FTIR in the 2000-100 cm-1 region., Competing Interests: The authors declare no competing financial interest., (© 2022 The Authors. Published by American Chemical Society.)- Published
- 2022
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7. Thermal Conductivity of Detonation Nanodiamond Hydrogels and Hydrosols by Direct Heat Flux Measurements.
- Author
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Usoltseva LO, Volkov DS, Karpushkin EA, Korobov MV, and Proskurnin MA
- Abstract
The methodology and results of thermal conductivity measurements by the heat-flow technique for the detonation nanodiamond suspension gels, sols, and powders of several brands in the range of nanoparticle concentrations of 2-100% w / w are discussed. The conditions of assessing the thermal conductivity of the fluids and gels (a FOX 50 heat-flow meter) with the reproducibility (relative standard deviation) of 1% are proposed. The maximum increase of 13% was recorded for the nanodiamond gels (140 mg mL
-1 or 4% v / v ) of the RDDM brand, at 0.687 ± 0.005 W m-1 K-1 . The thermal conductivity of the nanodiamond powders is estimated as 0.26 ± 0.03 and 0.35 ± 0.04 W m-1 K-1 for the RUDDM and RDDM brands, respectively. The thermal conductivity for the aqueous pastes containing 26% v / v RUDDM is 0.85 ± 0.04 W m-1 K-1 . The dignities, shortcomings, and limitations of this approach are discussed and compared with the determining of the thermal conductivity with photothermal-lens spectrometry.- Published
- 2021
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8. A Use of Tritium-Labeled Peat Fulvic Acids and Polyphenolic Derivatives for Designing Pharmacokinetic Experiments on Mice.
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Badun GA, Chernysheva MG, Zhernov YV, Poroshina AS, Smirnov VV, Pigarev SE, Mikhnevich TA, Volkov DS, Perminova IV, and Fedoros EI
- Abstract
Natural products (e.g., polyphenols) have been used as biologically active compounds for centuries. Still, the mechanisms of biological activity of these multicomponent systems are poorly understood due to a lack of appropriate experimental techniques. The method of tritium thermal bombardment allows for non-selective labeling and tracking of all components of complex natural systems. In this study, we applied it to label two well-characterized polyphenolic compounds, peat fulvic acid (FA-Vi18) and oxidized lignin derivative (BP-Cx-1), of predominantly hydrophilic and hydrophobic character, respectively. The identity of the labeled samples was confirmed using size exclusion chromatography. Using ultra-high resolution Fourier transform ion cyclotron resonance mass spectrometry (FT ICR MS), key differences in the molecular composition of BP-Cx-1 and FA-Vi18 were revealed. The labeled samples ([
3 H]-FA-Vi18 (10 mg/kg) and [3 H]-BP-Cx-1 (100 mg/kg)) were administered to female BALB/c mice intravenously (i.v.) and orally. The label distribution was assessed in blood, liver, kidneys, brain, spleen, thymus, ovaries, and heart using liquid scintillation counting. Tritium label was found in all organs studied at different concentrations. For the fulvic acid sample, the largest accumulation was observed in the kidney (Cmax 28.5 mg/kg and 5.6 mg/kg, respectively) for both routes. The organs of preferential accumulation of the lignin derivative were the liver (Cmax accounted for 396.7 and 16.13 mg/kg for i.v. and p.o. routes, respectively) and kidney (Cmax accounted for 343.3 and 17.73 mg/kg for i.v. and p.o. routes, respectively). Our results demonstrate that using the tritium labeling technique enabled successful pharmacokinetic studies on polyphenolic drugs with very different molecular compositions. It proved to be efficient for tissue distribution studies. It was also shown that the dosage of the polyphenolic drug might be lower than 10 mg/kg due to the sensitivity of the3 H detection technique.- Published
- 2021
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9. Green and rapid preparation of long-term stable aqueous dispersions of fullerenes and endohedral fullerenes: The pros and cons of an ultrasonic probe.
- Author
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Mikheev IV, Pirogova MO, Usoltseva LO, Uzhel AS, Bolotnik TA, Kareev IE, Bubnov VP, Lukonina NS, Volkov DS, Goryunkov AA, Korobov MV, and Proskurnin MA
- Abstract
A green, scalable, and sustainable approach to prepare aqueous fullerene dispersions (AFD) C
60 , C70 , endohedral metallofullerene Gd@C82 , and their derivatives C60 Cl6 , C70 Cl10 , and supramolecular and ester-like derivatives, 10 fullerene species total, is proposed. For the first time, an immersed ultrasonic probe was used to preparing dispersions for pristine fullerenes without addends. Both ultrasound-assisted solvent-exchange and direct sonication techniques for AFD preparation using an immersed probe were tested. The average time for AFD preparation decreases 10-15 times compared to an ultrasound-bath-assisted technique, while final fullerene concentrations in AFDs remained at tens of ppm (up to 80 ppm). The aqueous dispersions showed long-term stability, a negatively charged surface with a zeta potential up to -32 mV with an average nanocluster diameter of no more than 180 nm. The total anionic and cationic compositions of samples were found by inductively coupled plasma atomic emission spectroscopy and chromatographic techniques. The highlights and challenges of using an ultrasound probe for AFD production are discussed., (Copyright © 2021 The Authors. Published by Elsevier B.V. All rights reserved.)- Published
- 2021
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10. Speciation of organosulfur compounds in carbonaceous chondrites.
- Author
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Zherebker A, Kostyukevich Y, Volkov DS, Chumakov RG, Friederici L, Rüger CP, Kononikhin A, Kharybin O, Korochantsev A, Zimmermann R, Perminova IV, and Nikolaev E
- Abstract
Despite broad application of different analytical techniques for studies on organic matter of chondrite meteorites, information about composition and structure of individual compounds is still very limited due to extreme molecular diversity of extraterrestrial organic matter. Here we present the first application of isotopic exchange assisted Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS) for analysis of alkali extractable fraction of insoluble organic matter (IOM) of the Murchison and Allende meteorites. This allowed us to determine the individual S-containing ions with different types of sulfur atoms in IOM. Thiols, thiophenes, sulfoxides, sulfonyls and sulfonates were identified in both samples but with different proportions, which contribution corroborated with the hydrothermal and thermal history of the meteorites. The results were supported by XPS and thermogravimetric analysis coupled to FTICR MS. The latter was applied for the first time for analysis of chondritic IOM. To emphasize the peculiar extraterrestrial origin of IOM we have compared it with coal kerogen, which is characterized by the comparable complexity of molecular composition but its aromatic nature and low oxygen content can be ascribed almost exclusively to degradation of biomacromolecules.
- Published
- 2021
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11. Poly(Ethylene Glycol)- b -Poly(D,L-Lactide) Nanoparticles as Potential Carriers for Anticancer Drug Oxaliplatin.
- Author
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Kadina YA, Razuvaeva EV, Streltsov DR, Sedush NG, Shtykova EV, Kulebyakina AI, Puchkov AA, Volkov DS, Nazarov AA, and Chvalun SN
- Subjects
- Biocompatible Materials chemistry, Drug Delivery Systems methods, Hydrophobic and Hydrophilic Interactions, Particle Size, Antineoplastic Agents chemistry, Drug Carriers chemistry, Nanoparticles chemistry, Oxaliplatin chemistry, Polyesters chemistry, Polyethylene Glycols chemistry, Polymers chemistry
- Abstract
Nanoparticles based on biocompatible methoxy poly(ethylene glycol)- b -poly(D,L-lactide) (mPEG
113 - b -P(D,L)LAn ) copolymers as potential vehicles for the anticancer agent oxaliplatin were prepared by a nanoprecipitation technique. It was demonstrated that an increase in the hydrophobic PLA block length from 62 to 173 monomer units leads to an increase of the size of nanoparticles from 32 to 56 nm. Small-angle X-ray scattering studies confirmed the "core-corona" structure of mPEG113 - b -P(D,L)LAn nanoparticles and oxaliplatin loading. It was suggested that hydrophilic oxaliplatin is adsorbed on the core-corona interface of the nanoparticles during the nanoprecipitation process. The oxaliplatin loading content decreased from 3.8 to 1.5% wt./wt. (with initial loading of 5% wt./wt.) with increasing PLA block length. Thus, the highest loading content of the anticancer drug oxaliplatin with its encapsulation efficiency of 76% in mPEG113 - b -P(D,L)LAn nanoparticles can be achieved for block copolymer with short hydrophobic block.- Published
- 2021
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12. La, Ce and Nd in the soil-plant system in a vegetation experiment with barley (Hordeum vulgare L.).
- Author
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Kotelnikova A, Fastovets I, Rogova O, and Volkov DS
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- Biological Transport, Biomass, Cerium metabolism, Hordeum growth & development, Hordeum metabolism, Lanthanum metabolism, Models, Theoretical, Neodymium metabolism, Photosynthesis drug effects, Soil Pollutants metabolism, Cerium analysis, Hordeum drug effects, Lanthanum analysis, Neodymium analysis, Soil chemistry, Soil Pollutants analysis
- Abstract
Rare earth elements (REEs) have received enormous attention in recent years. However, there are many gaps in the understanding of their behavior in the soil-plant system. The aim of this study is to investigate the behavior of three most common REEs (La, Ce, Nd) in the soil-plant system directly on soil samples using barley (Hordeum vulgare L.) in a vegetation experiment. We attribute the absence of significant changes in plant biomass and photosynthetic pigment content to the reduced availability of REEs in soil samples. The concentration of water-soluble forms of La, Ce and Nd didn't exceed 1 mg/kg, while the concentration of exchangeable forms varied and decreased in a row La > Ce > Nd. The transfer factor (TF) from soil to above-ground biomass was low for all three elements (<1). The stem-to-leaf TF increased with the increase in REEs concentration in soil. The concentration in plant material increased in the row Ce < Nd < La. REEs concentrations in barley leaves didn't exceed 1-3% of the corresponding element concentration in soil samples. REEs concentration in plant tissues is in close direct correlation with the REEs total concentration in soil, water-soluble and exchange forms. REEs concentration in barley leaves is 3-4 times higher than in the stems and for the group with extraneous concentration of 200 mg/kg for La, Ce and Nd was 6.20 ± 1.48, 2.10 ± 0.51, 6.90 ± 3.00 mg/kg, respectively. We show that there were no major changes in barley plants, but further study is needed of the relationship between the absorption of lanthanides by plants and the content of various forms of lanthanides in the soil., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2020
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13. Detonation Nanodiamonds: A Comparison Study by Photoacoustic, Diffuse Reflectance, and Attenuated Total Reflection FTIR Spectroscopies.
- Author
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Volkov DS, Krivoshein PK, and Proskurnin MA
- Abstract
The qualitative analysis of nanodiamonds by FTIR spectrometry as photoacoustic (FTIR-PAS), diffuse-reflectance (DRIFT), and attenuated total reflection (ATR) modalities was evaluated for rapid and nondestructive analysis and comparison of nanodiamonds. The reproducibility and signal-gathering depth of spectra was compared. The assignment of characteristic bands showed that only six groups of bands were present in spectra of all the modalities with appropriate sensitivity: 1760 (C=O stretch, isolated carboxyl groups); 1640-1632 (H-O-H bend, liquid water); 1400-1370 (non-carboxyl C-O-H in-plane bend and CH
2 deformation); 1103 (non-carboxyl C-O stretch); 1060 (in-plane C-H bend, non-aromatic hydrocarbons and carbohydrates); 940 cm-1 (out-of-plane carboxyl C-O-H bend). DRIFT provides the maximum number of bands and is capable of measuring hydrogen-bonded bands and CHx groups. ATR provides the good sensitivity for water and C-H/C-C bands in the range 2000-400 cm-1 . FTIR-PAS reveals less bands than DRIFT but more intense bands than ATR-FTIR and shows the maximum sensitivity for absorption bands that do not appear in ATR-IR spectra and are expedient for supporting either DRIFT or FTIR-PAS along with depth-profiling. Thus, all three modalities are required for the full characterization of nanodiamonds surface functional groups.- Published
- 2020
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14. FTIR photoacoustic spectroscopy for identification and assessment of soil components: Chernozems and their size fractions.
- Author
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Krivoshein PK, Volkov DS, Rogova OB, and Proskurnin MA
- Abstract
FTIR photoacoustic spectroscopy was used to approach inorganic matrix components and organic-matter constituents of chernozem size fractions (1-5000 μm, by dry sieving) with a different history of use (from intact steppe to permanent bare fallow, a continuous long-term field experiment). The conditions of FTIR photoacoustic measurements in continuous-scan modes were compared with attenuated total reflection measurements, the advantages of photoacoustic measurements resulting from a higher intensity of the incident radiation and signal-generating volume were discussed. Overtone peaks of quartz as a soil matrix component at 2000-1700 cm
-1 were selected as a possible internal-standard (guide) bands for the comparison of photoacoustic spectra. For different land-use samples, differences in the composition were found, which are differently manifested in normalized spectra of size fractions, with millimeter-size, 20-100 μm, and silt fraction bearing the maximum information., (© 2020 The Authors.)- Published
- 2020
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15. Photoacoustic and photothermal methods in spectroscopy and characterization of soils and soil organic matter.
- Author
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Volkov DS, Rogova OB, and Proskurnin MA
- Abstract
Review sums up the application of photoacoustic and photothermal spectroscopies for the analysis and characterization of soils and soil organic matter and discusses the outlooks in this area., Competing Interests: No competing interests., (© 2019 The Author(s).)
- Published
- 2019
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16. Titanium Oxide Microspheres with Tunable Size and Phase Composition.
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Poluboyarinov AS, Chelpanov VI, Lebedev VA, Kozlov DA, Khazova KM, Volkov DS, Kolesnik IV, and Garshev AV
- Abstract
Due to their unique physical and chemical properties, monodisperse titanium oxide microspheres can be used in dye-sensitized solar cells, as cosmetic pigments, and for other applications. However, the synthesis of microspheres with narrow size distribution, desired phase composition, and porosity is still a challenge. In this work, spherical titania particles with controllable size, crystallinity, and pore size were obtained by Ti(O
n Bu)4 hydrolysis in ethanol. The influence of NaOH addition on the particles' size and morphology was investigated for the first time. Particle diameter can be tailored from 300 nm to 1.5 μm by changing water and NaOH concentrations. Particle size was analyzed by the statistical processing of scanning electron microscopy (SEM) images and differential centrifugal sedimentation (DCS) measurements. Optical properties of the microspheres were studied by diffuse reflectance UV-Vis spectroscopy. Thermal and hydrothermal treatment allowed transforming amorphous phase in as-prepared particles into nanocrystalline anatase and/or rutile. Transmission electron microscopy (TEM) study of the lamellae, cut out from spherical particles using focused ion beam (FIB), revealed that as-synthesized microspheres are non-hollow, homogeneous, and crystallize throughout the whole volume of the particle. The spherical particles possess photoprotective properties; the highest sun protection factor (SPF) was observed for amorphous microspheres.- Published
- 2019
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17. Eco-Friendly Iron-Humic Nanofertilizers Synthesis for the Prevention of Iron Chlorosis in Soybean ( Glycine max ) Grown in Calcareous Soil.
- Author
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Cieschi MT, Polyakov AY, Lebedev VA, Volkov DS, Pankratov DA, Veligzhanin AA, Perminova IV, and Lucena JJ
- Abstract
Iron deficiency is a frequent problem for many crops, particularly in calcareous soils and iron humates are commonly applied in the Mediterranean basin in spite of their lesser efficiency than iron synthetic chelates. Development and application of new fertilizers using nanotechnology are one of the potentially effective options of enhancing the iron humates, according to the sustainable agriculture. Particle size, pH, and kinetics constrain the iron humate efficiency. Thus, it is relevant to understand the iron humate mechanism in the plant-soil system linking their particle size, characterization and iron distribution in plant and soil using
57 Fe as a tracer tool. Three hybrid nanomaterials (F, S, and M) were synthesized as iron-humic nanofertilizers (57 Fe-NFs) from leonardite potassium humate and57 Fe used in the form of57 Fe(NO3 )3 or57 Fe2 (SO4 )3 . They were characterized using Mössbauer spectroscopy, X-ray diffraction (XRD), extended X-ray absorption fine structure spectroscopy (EXAFS), transmission electron microscopy (TEM) and tested for iron availability in a calcareous soil pot experiment carried out under growth chamber conditions. Three doses (35, 75, and 150 μmol pot-1 ) of each iron-humic material were applied to soybean iron deficient plants and their iron nutrition contributions were compared to57 FeEDDHA and leonardite potassium humate as control treatments. Ferrihydrite was detected as the main structure of all three57 Fe-NFs and the plants tested with iron-humic compounds exhibited continuous long-term statistically reproducible iron uptake and showed high shoot fresh weight. Moreover, the57 Fe from the humic nanofertilizers remained available in soil and was detected in soybean pods. The Fe-NFs offers a natural, low cost and environmental option to the traditional iron fertilization in calcareous soils.- Published
- 2019
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18. Toxicity assay of lanthanum and cerium in solutions and soil.
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Kotelnikova A, Fastovets I, Rogova O, Volkov DS, and Stolbova V
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- Meristem drug effects, Meristem metabolism, Metals, Rare Earth toxicity, Onions, Plant Cells drug effects, Plant Cells metabolism, Plant Roots drug effects, Plant Roots metabolism, Soil Pollutants, Cerium toxicity, Lanthanum toxicity, Soil chemistry, Toxicity Tests
- Abstract
Lanthanum (La) and cerium (Ce) are one of the most abundant rare earth elements (REEs). In spite of quite extensive studying of the effects of these lanthanides on biota, some contradictions remain in the results. Also little is known about the effect of lanthanum and cerium on plant cells and their mitotic cycle, especially in soils. In this study, the effects of La and Ce in solutions and soil samples on root growth, mitotic index (MI) and frequency of aberrant cells (FAC) were assayed using one of the most convenient objects for testing of cytotoxicity - onion Allium cepa L. Bulbs were germinated on media containing La and Ce in concentrations 0-200 mg/l and 0-50 mg/l respectively for solutions and 0-200 mg/kg for soil samples. After 5 days of germination in solutions, a significant decrease in root elongation and MI in apical meristem cells are shown. We have also observed an increase in the number of cells with aberrations at 50 mg/l La and Ce concentration. The number of observed stickiness and disturbed metaphase has increased significantly. Soil samples turned out to be less toxic compared to the solutions probably due to the decreased availability of REEs. In spite of this, significant cytotoxicity of soil samples containing the highest concentration of La and Ce (200 mg/kg) is observed. The latter may indicate the importance of considering the cytotoxicity of soils containing high lanthanides concentrations - in extraction and production areas and actively fertilized fields., (Copyright © 2018 Elsevier Inc. All rights reserved.)
- Published
- 2019
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19. Absorption spectra of nanodiamond aqueous dispersions by optical absorption and optoacoustic spectroscopies.
- Author
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Usoltseva LO, Volkov DS, Nedosekin DA, Korobov MV, Proskurnin MA, and Zharov VP
- Abstract
The multispectral modality and technique for optically dense samples of optoacoustic spectroscopy were applied to measure spectra and high absorbances of concentrated aqueous dispersions of undoped nanodiamonds. The data from optoacoustic and optical transmission measurements and DSC data of the mean particle size by the Gibbs-Kelvin equation are compared to estimate the difference in composition of various nanodiamond trademarks. Optoacoustic spectra confirm the contribution of surface dimer chains into the absorption of nanodiamonds in the long wavelength range. Optoacoustic and conventional absorption spectra of aqueous solutions of nanodiamond fractions after centrifugation (15300 g ) and ultracentrifugation (130000 g ) revealed a separation of a highly absorbing non-diamond sp
2 phase. The two-step separation by ultracentrifugation followed by extra centrifugation made it possible to isolate a highly absorbing and soluble nanodiamond phase with the particle size of 3.6 nm, showing a change in spectra compared to the starting nanodiamond material.- Published
- 2018
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20. Key Roles of Size and Crystallinity of Nanosized Iron Hydr(oxides) Stabilized by Humic Substances in Iron Bioavailability to Plants.
- Author
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Kulikova NA, Polyakov AY, Lebedev VA, Abroskin DP, Volkov DS, Pankratov DA, Klein OI, Senik SV, Sorkina TA, Garshev AV, Veligzhanin AA, Garcia Mina JM, and Perminova IV
- Subjects
- Biological Availability, Hydroxides metabolism, Nanoparticles metabolism, Particle Size, Triticum growth & development, X-Ray Diffraction, Fertilizers analysis, Humic Substances analysis, Hydroxides chemistry, Iron chemistry, Iron metabolism, Nanoparticles chemistry, Triticum metabolism
- Abstract
Availability of Fe in soil to plants is closely related to the presence of humic substances (HS). Still, the systematic data on applicability of iron-based nanomaterials stabilized with HS as a source for plant nutrition are missing. The goal of our study was to establish a connection between properties of iron-based materials stabilized by HS and their bioavailability to plants. We have prepared two samples of leonardite HS-stabilized iron-based materials with substantially different properties using the reported protocols and studied their physical chemical state in relation to iron uptake and other biological effects. We used Mössbauer spectroscopy, XRD, SAXS, and TEM to conclude on iron speciation, size, and crystallinity. One material (Fe-HA) consisted of polynuclear iron(III) (hydr)oxide complexes, so-called ferric polymers, distributed in HS matrix. These complexes are composed of predominantly amorphous small-size components (<5 nm) with inclusions of larger crystalline particles (the mean size of (11 ± 4) nm). The other material was composed of well-crystalline feroxyhyte (δ'-FeOOH) NPs with mean transverse sizes of (35 ± 20) nm stabilized by small amounts of HS. Bioavailability studies were conducted on wheat plants under conditions of iron deficiency. The uptake studies have shown that small and amorphous ferric polymers were readily translocated into the leaves on the level of Fe-EDTA, whereas relatively large and crystalline feroxyhyte NPs were mostly sorbed on the roots. The obtained data are consistent with the size exclusion limits of cell wall pores (5-20 nm). Both samples demonstrated distinct beneficial effects with respect to photosynthetic activity and lipid biosynthesis. The obtained results might be of use for production of iron-based nanomaterials stabilized by HS with the tailored iron availability to plants. They can be applied as the only source for iron nutrition as well as in combination with the other elements, for example, for industrial production of "nanofortified" macrofertilizers (NPK).
- Published
- 2017
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21. Optoacoustic determination of analytical parameters and physicochemical constants in highly concentrated solutions of chromophores.
- Author
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Lobko KV, Shishkin MA, Filimonova TA, Volkov DS, Pelivanov IM, and Proskurnin MA
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- Absorption, Physicochemical, Anthocyanins chemistry, Calibration, Color, Food Analysis, Solutions, Acoustics, Anthocyanins analysis, Chemical Phenomena, Optical Phenomena
- Abstract
Determination of chromophores of various classes-rosaniline (fuchsine), cyanidin-3-O-glucoside, tris(1,10-phenanthroline) iron(II), and phenol red - in their concentrated solutions near their solubility limits is performed with the optoacoustic technique for optically dense solutions; light-absorption coefficients of samples range from 0.5 to 500cm
-1 . The assessment of these substances in organo-aqueous and organic solvents is possible up to ca. 0.1molL-1 . Characteristic stability and rate constants of the chelation of iron(II) with 1,10-phenanthroline are determined. It was found that turbidities up to 200 FTU and dynamic viscosities up to 20mPas do not affect the determination. The determination of total anthocyanins (as cyanidin-3-O-glucoside) in bilberry and sweet-cherry juices agrees with the reference spectrophotometric method and demonstrates the possibilities of the optoacoustic technique for the analysis of real samples without dilution and with almost no sample preparation., (Copyright © 2017 Elsevier B.V. All rights reserved.)- Published
- 2017
- Full Text
- View/download PDF
22. The Origins of Specificity in the Microcin-Processing Protease TldD/E.
- Author
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Ghilarov D, Serebryakova M, Stevenson CEM, Hearnshaw SJ, Volkov DS, Maxwell A, Lawson DM, and Severinov K
- Subjects
- Bacteriocins metabolism, Catalytic Domain, Crystallography, X-Ray, Escherichia coli chemistry, Models, Molecular, Peptides metabolism, Protein Conformation, Substrate Specificity, Escherichia coli metabolism, Escherichia coli Proteins chemistry, Escherichia coli Proteins metabolism, Peptide Hydrolases chemistry, Peptide Hydrolases metabolism
- Abstract
TldD and TldE proteins are involved in the biosynthesis of microcin B17 (MccB17), an Escherichia coli thiazole/oxazole-modified peptide toxin targeting DNA gyrase. Using a combination of biochemical and crystallographic methods we show that E. coli TldD and TldE interact to form a heterodimeric metalloprotease. TldD/E cleaves the N-terminal leader sequence from the modified MccB17 precursor peptide, to yield mature antibiotic, while it has no effect on the unmodified peptide. Both proteins are essential for the activity; however, only the TldD subunit forms a novel metal-containing active site within the hollow core of the heterodimer. Peptide substrates are bound in a sequence-independent manner through β sheet interactions with TldD and are likely cleaved via a thermolysin-type mechanism. We suggest that TldD/E acts as a "molecular pencil sharpener": unfolded polypeptides are fed through a narrow channel into the active site and processively truncated through the cleavage of short peptides from the N-terminal end., (Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2017
- Full Text
- View/download PDF
23. Direct solubility determination in optically dense solutions of highly soluble chromophores by the optoacoustic technique: Acidity dependence for Phenol Red.
- Author
-
Shishkin MA, Volkov DS, Pelivanov IM, and Proskurnin MA
- Abstract
The optoacoustic (OA) technique capable for light-absorption measurements in highly concentrated solutions is applied for direct solubility assessment in highly absorbing saturated solutions without any dilution or sample preparation. Maximum solubility of Phenol Red in aqueous solutions at pH>11 is found to be 1.3±0.1 g/L. The experimental dependence of solubility of Phenol Red on solution acidity was obtained with optoacoustic and conventional spectrophotometric measurements. The data from both methods show complementary results. The model of the solubility of Phenol Red on solution acidity describing the experimental dependence is proposed, which cannot be attained at pHs above 7 without the OA-technique., (Copyright © 2016 Elsevier B.V. All rights reserved.)
- Published
- 2017
- Full Text
- View/download PDF
24. Selective ruthenium labeling of the tryptophan residue in the bee venom Peptide melittin.
- Author
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Perekalin DS, Novikov VV, Pavlov AA, Ivanov IA, Anisimova NY, Kopylov AN, Volkov DS, Seregina IF, Bolshov MA, and Kudinov AR
- Subjects
- Amino Acid Sequence, Animals, Mice, Molecular Sequence Data, Molecular Structure, Peptides, Bee Venoms chemistry, Melitten chemistry, Ruthenium chemistry, Tryptophan chemistry
- Abstract
Melittin is a membrane-active peptide from bee venom with promising antimicrobial and anticancer activity. Herein we report on a simple and selective method for labeling of the tryptophan residue in melittin by the organometallic fragment [(C5 H5 )Ru](+) in aqueous solution and in air. Ruthenium coordination does not disturb the secondary structure of the peptide (as verified by 2D NMR spectroscopy), but changes the pattern of its intermolecular interactions resulting in an 11-fold decrease of hemolytic activity. The high stability of the organometallic conjugate allowed the establishment of the biodistribution of the labeled melittin in mice by inductively coupled plasma MS analysis of ruthenium., (© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2015
- Full Text
- View/download PDF
25. Optoacoustic spectroscopy for real-time monitoring of strongly light-absorbing solutions in applications to analytical chemistry.
- Author
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Filimonova TA, Volkov DS, Proskurnin MA, and Pelivanov IM
- Abstract
An optoacoustic technique for solutions of strongly light-absorbing analytes at 0.1-0.01 mol l(-1) is proposed. The technique is based on the wide-band forward mode detection of temporal profiles of laser-generated ultrasonic pulses (optoacoustic signals). The leading edge of the signal repeats the distribution of the laser fluence in the medium, which makes it possible to determine its optical absorption and investigate its dynamics during a reaction. The range of light-absorption coefficients starts from 1 to 5 and reaches 10(4) to 10(5) cm(-1). The determination of iron(II) as ferroin shows the possibility of probing 0.1 mol l(-1) of iron(II), which was not previously achieved for this reaction by optical spectroscopy. To further prove the concept, kinetic measurements for ferroin decomposition at the level of 0.1 mol l(-1) and at high pHs are performed. The results are compared with spectrophotometry at lower concentrations and show good reproducibility and accuracy of kinetic constants.
- Published
- 2013
- Full Text
- View/download PDF
26. Improving the dispersity of detonation nanodiamond: differential scanning calorimetry as a new method of controlling the aggregation state of nanodiamond powders.
- Author
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Korobov MV, Volkov DS, Avramenko NV, Belyaeva LA, Semenyuk PI, and Proskurnin MA
- Subjects
- Colloids chemistry, Hot Temperature, Macromolecular Substances chemistry, Materials Testing, Molecular Conformation, Particle Size, Powders, Surface Properties, Calorimetry, Differential Scanning methods, Crystallization methods, Diamond chemistry, Nanostructures chemistry, Nanostructures ultrastructure
- Abstract
Detonation nanodiamond (ND) is a suitable source material to produce unique samples consisting of almost uniform diamond nanocrystals (d = 3-5 nm). Such samples exist in the form of long stable aqueous dispersions with narrow size distribution of diamond particles. The material is finding ever increasing application in biomedicine. The major problem in producing monodispersed diamond colloids lies in the necessity of deagglomeration of detonation soot and/or removing of clusters formed by already isolated core particles in dry powders. To do this one must have an effective method to monitor the aggregation state or dispersity of powders and gels prior to the preparation of aqueous dispersions. In the absence of dispersity control at various stages of preparation the reproducibility of properties of existing ND materials is poor. In this paper we introduce differential scanning calorimetry (DSC) as a new tool capable to distinguish the state of aggregation in dry and wetted ND materials and to follow changes in this state under different types of treatment. Samples with identical X-ray diffraction patterns (XRD) and high resolution transmission electron microscopy (HRTEM) images gave visibly different DSC traces. Strong correlation was found between dynamic light scattering (DLS) data for colloids and DSC parameters for gels and powders of the same material. Based on DSC data we improved dispersity of existing ND materials and isolated samples with the best possible DSC parameters. These were true monodispersed easily dispersible fractions of ND particles with diameters of ca. 3 nm.
- Published
- 2013
- Full Text
- View/download PDF
27. In vivo multispectral photoacoustic and photothermal flow cytometry with multicolor dyes: a potential for real-time assessment of circulation, dye-cell interaction, and blood volume.
- Author
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Proskurnin MA, Zhidkova TV, Volkov DS, Sarimollaoglu M, Galanzha EI, Mock D, Nedosekin DA, and Zharov VP
- Subjects
- Animals, Blood Loss, Surgical, Contrast Media metabolism, Contrast Media pharmacokinetics, Erythrocytes cytology, Flow Cytometry instrumentation, Fluorescent Dyes metabolism, Fluorescent Dyes pharmacokinetics, Gentian Violet analysis, Gentian Violet metabolism, Gentian Violet pharmacokinetics, Hemorheology physiology, Humans, Indocyanine Green analysis, Indocyanine Green metabolism, Indocyanine Green pharmacokinetics, Injections, Intravenous, Kinetics, Methylene Blue analysis, Methylene Blue metabolism, Methylene Blue pharmacokinetics, Mice, Mice, Nude, Molecular Imaging instrumentation, Photoacoustic Techniques instrumentation, Spectrum Analysis, Trypan Blue analysis, Trypan Blue metabolism, Trypan Blue pharmacokinetics, Blood Volume, Contrast Media analysis, Erythrocytes metabolism, Flow Cytometry methods, Fluorescent Dyes analysis, Molecular Imaging methods, Photoacoustic Techniques methods
- Abstract
Recently, photoacoustic (PA) flow cytometry (PAFC) has been developed for in vivo detection of circulating tumor cells and bacteria targeted by nanoparticles. Here, we propose multispectral PAFC with multiple dyes having distinctive absorption spectra as multicolor PA contrast agents. As a first step of our proof-of-concept, we characterized high-speed PAFC capability to monitor the clearance of three dyes (Indocyanine Green [ICG], Methylene Blue [MB], and Trypan Blue [TB]) in an animal model in vivo and in real time. We observed strong dynamic PA signal fluctuations, which can be associated with interactions of dyes with circulating blood cells and plasma proteins. PAFC demonstrated enumeration of circulating red and white blood cells labeled with ICG and MB, respectively, and detection of rare dead cells uptaking TB directly in bloodstream. The possibility for accurate measurements of various dye concentrations including Crystal Violet and Brilliant Green were verified in vitro using complementary to PAFC photothermal (PT) technique and spectrophotometry under batch and flow conditions. We further analyze the potential of integrated PAFC/PT spectroscopy with multiple dyes for rapid and accurate measurements of circulating blood volume without a priori information on hemoglobin content, which is impossible with existing optical techniques. This is important in many medical conditions including surgery and trauma with extensive blood loss, rapid fluid administration, and transfusion of red blood cells. The potential for developing a robust clinical PAFC prototype that is safe for human, and its applications for studying the liver function are further highlighted., (Copyright © 2011 International Society for Advancement of Cytometry.)
- Published
- 2011
- Full Text
- View/download PDF
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