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Your search keyword '"Varga, Torda"' showing total 20 results
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20 results on '"Varga, Torda"'

2. Phylogenomics, divergence times and notes of orders in Basidiomycota

Author

He, Mao-Qiang, Cao, Bin, Liu, Fei, Boekhout, Teun, Denchev, Teodor T., Schoutteten, Nathan, Denchev, Cvetomir M., Kemler, Martin, Gorjón, Sergio P., Begerow, Dominik, Valenzuela, Ricardo, Davoodian, Naveed, Niskanen, Tuula, Vizzini, Alfredo, Redhead, Scott A., Ramírez-Cruz, Virginia, Papp, Viktor, Dudka, Vasiliy A., Dutta, Arun Kumar, García-Sandoval, Ricardo, Liu, Xin-Zhan, Kijpornyongpan, Teeratas, Savchenko, Anton, Tedersoo, Leho, Theelen, Bart, Trierveiler-Pereira, Larissa, Wu, Fang, Zamora, Juan Carlos, Zeng, Xiang-Yu, Zhou, Li-Wei, Liu, Shi-Liang, Ghobad-Nejhad, Masoomeh, Giachini, Admir J., Li, Guo-Jie, Kakishima, Makoto, Olariaga, Ibai, Haelewaters, Danny, Sulistyo, Bobby, Sugiyama, Junta, Svantesson, Sten, Yurkov, Andrey, Alvarado, Pablo, Antonín, Vladimír, da Silva, André Felipe, Druzhinina, Irina, Gibertoni, Tatiana B., Guzmán-Dávalos, Laura, Justo, Alfredo, Karunarathna, Samantha C., Galappaththi, Mahesh C. A., Toome-Heller, Merje, Hosoya, Tsuyoshi, Liimatainen, Kare, Márquez, Rodrigo, Mešić, Armin, Moncalvo, Jean-Marc, Nagy, László G., Varga, Torda, Orihara, Takamichi, Raymundo, Tania, Salcedo, Isabel, Silva-Filho, Alexandre G. S., Tkalčec, Zdenko, Wartchow, Felipe, Zhao, Chang-Lin, Bau, Tolgor, Cabarroi-Hernández, Milay, Cortés-Pérez, Alonso, Decock, Cony, De Lange, Ruben, Weiss, Michael, Menolli, Jr., Nelson, Nilsson, R. Henrik, Fan, Yu-Guang, Verbeken, Annemieke, Gafforov, Yusufjon, Meiras-Ottoni, Angelina, Mendes-Alvarenga, Renato L., Zeng, Nian-Kai, Wu, Qi, Hyde, Kevin D., Kirk, Paul M., and Zhao, Rui-Lin

Published
2024
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3. Megaphylogeny resolves global patterns of mushroom evolution

Author

Varga, Torda, Krizsán, Krisztina, Földi, Csenge, Dima, Bálint, Sánchez-García, Marisol, Sánchez-Ramírez, Santiago, Szöllősi, Gergely J, Szarkándi, János G, Papp, Viktor, Albert, László, Andreopoulos, William, Angelini, Claudio, Antonín, Vladimír, Barry, Kerrie W, Bougher, Neale L, Buchanan, Peter, Buyck, Bart, Bense, Viktória, Catcheside, Pam, Chovatia, Mansi, Cooper, Jerry, Dämon, Wolfgang, Desjardin, Dennis, Finy, Péter, Geml, József, Haridas, Sajeet, Hughes, Karen, Justo, Alfredo, Karasiński, Dariusz, Kautmanova, Ivona, Kiss, Brigitta, Kocsubé, Sándor, Kotiranta, Heikki, LaButti, Kurt M, Lechner, Bernardo E, Liimatainen, Kare, Lipzen, Anna, Lukács, Zoltán, Mihaltcheva, Sirma, Morgado, Louis N, Niskanen, Tuula, Noordeloos, Machiel E, Ohm, Robin A, Ortiz-Santana, Beatriz, Ovrebo, Clark, Rácz, Nikolett, Riley, Robert, Savchenko, Anton, Shiryaev, Anton, Soop, Karl, Spirin, Viacheslav, Szebenyi, Csilla, Tomšovský, Michal, Tulloss, Rodham E, Uehling, Jessie, Grigoriev, Igor V, Vágvölgyi, Csaba, Papp, Tamás, Martin, Francis M, Miettinen, Otto, Hibbett, David S, and Nagy, László G

Subjects
Biological Sciences, Ecology, Evolutionary Biology, Agaricales, Genetic Variation, Genome, Fungal, Phylogeny, Evolutionary biology, Environmental management
Abstract

Mushroom-forming fungi (Agaricomycetes) have the greatest morphological diversity and complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles in the ecosystem, including wood decomposers, pathogens or mycorrhizal mutualists. Despite the importance of mushroom-forming fungi, large-scale patterns of their evolutionary history are poorly known, in part due to the lack of a comprehensive and dated molecular phylogeny. Here, using multigene and genome-based data, we assemble a 5,284-species phylogenetic tree and infer ages and broad patterns of speciation/extinction and morphological innovation in mushroom-forming fungi. Agaricomycetes started a rapid class-wide radiation in the Jurassic, coinciding with the spread of (sub)tropical coniferous forests and a warming climate. A possible mass extinction, several clade-specific adaptive radiations and morphological diversification of fruiting bodies followed during the Cretaceous and the Paleogene, convergently giving rise to the classic toadstool morphology, with a cap, stalk and gills (pileate-stipitate morphology). This morphology is associated with increased rates of lineage diversification, suggesting it represents a key innovation in the evolution of mushroom-forming fungi. The increase in mushroom diversity started during the Mesozoic-Cenozoic radiation event, an era of humid climate when terrestrial communities dominated by gymnosperms and reptiles were also expanding.

Published
2019

6. Author Correction: Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria

Author

Sipos, György, Prasanna, Arun N, Walter, Mathias C, O’Connor, Eoin, Bálint, Balázs, Krizsán, Krisztina, Kiss, Brigitta, Hess, Jaqueline, Varga, Torda, Slot, Jason, Riley, Robert, Bóka, Bettina, Rigling, Daniel, Barry, Kerrie, Lee, Juna, Mihaltcheva, Sirma, LaButti, Kurt, Lipzen, Anna, Waldron, Rose, Moloney, Nicola M, Sperisen, Christoph, Kredics, László, Vágvölgyi, Csaba, Patrignani, Andrea, Fitzpatrick, David, Nagy, István, Doyle, Sean, Anderson, James B, Grigoriev, Igor V, Güldener, Ulrich, Münsterkötter, Martin, and Nagy, László G

Subjects
Biological Sciences, Genetics, Ecology, Evolutionary biology, Environmental management
Abstract

In the version of this Article originally published, it was incorrectly stated that "16,687 protein-coding genes were inferred for the most recent common ancestor (MRCA) of Armillaria"; the value was incorrect and it should have read "15,787". This has now been corrected.

Published
2018

9. Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria

Author

Sipos, György, Prasanna, Arun N, Walter, Mathias C, O’Connor, Eoin, Bálint, Balázs, Krizsán, Krisztina, Kiss, Brigitta, Hess, Jaqueline, Varga, Torda, Slot, Jason, Riley, Robert, Bóka, Bettina, Rigling, Daniel, Barry, Kerrie, Lee, Juna, Mihaltcheva, Sirma, LaButti, Kurt, Lipzen, Anna, Waldron, Rose, Moloney, Nicola M, Sperisen, Christoph, Kredics, László, Vágvölgyi, Csaba, Patrignani, Andrea, Fitzpatrick, David, Nagy, István, Doyle, Sean, Anderson, James B, Grigoriev, Igor V, Güldener, Ulrich, Münsterkötter, Martin, and Nagy, László G

Subjects
Microbiology, Biological Sciences, Bioinformatics and Computational Biology, Genetics, Human Genome, Biotechnology, Armillaria, Fungal Proteins, Genome, Fungal, Proteomics, Sequence Analysis, RNA, Species Specificity, Transcriptome, Ecology, Evolutionary biology, Environmental management
Abstract

Armillaria species are both devastating forest pathogens and some of the largest terrestrial organisms on Earth. They forage for hosts and achieve immense colony sizes via rhizomorphs, root-like multicellular structures of clonal dispersal. Here, we sequenced and analysed the genomes of four Armillaria species and performed RNA sequencing and quantitative proteomic analysis on the invasive and reproductive developmental stages of A. ostoyae. Comparison with 22 related fungi revealed a significant genome expansion in Armillaria, affecting several pathogenicity-related genes, lignocellulose-degrading enzymes and lineage-specific genes expressed during rhizomorph development. Rhizomorphs express an evolutionarily young transcriptome that shares features with the transcriptomes of both fruiting bodies and vegetative mycelia. Several genes show concomitant upregulation in rhizomorphs and fruiting bodies and share cis-regulatory signatures in their promoters, providing genetic and regulatory insights into complex multicellularity in fungi. Our results suggest that the evolution of the unique dispersal and pathogenicity mechanisms of Armillaria might have drawn upon ancestral genetic toolkits for wood-decay, morphogenesis and complex multicellularity.

Published
2017

11. Correction to: FungalTraits: a user friendly traits database of fungi and fungus-like stramenopiles

Author

Põlme, Sergei, Abarenkov, Kessy, Henrik Nilsson, R., Lindahl, Björn D., Clemmensen, Karina Engelbrecht, Kauserud, Havard, Nguyen, Nhu, Kjøller, Rasmus, Bates, Scott T., Baldrian, Petr, Frøslev, Tobias Guldberg, Adojaan, Kristjan, Vizzini, Alfredo, Suija, Ave, Pfister, Donald, Baral, Hans-Otto, Järv, Helle, Madrid, Hugo, Nordén, Jenni, Liu, Jian-Kui, Pawlowska, Julia, Põldmaa, Kadri, Pärtel, Kadri, Runnel, Kadri, Hansen, Karen, Larsson, Karl-Henrik, Hyde, Kevin David, Sandoval-Denis, Marcelo, Smith, Matthew E., Toome-Heller, Merje, Wijayawardene, Nalin N., Menolli, Jr., Nelson, Reynolds, Nicole K., Drenkhan, Rein, Maharachchikumbura, Sajeewa S. N., Gibertoni, Tatiana B., Læssøe, Thomas, Davis, William, Tokarev, Yuri, Corrales, Adriana, Soares, Adriene Mayra, Agan, Ahto, Machado, Alexandre Reis, Argüelles-Moyao, Andrés, Detheridge, Andrew, de Meiras-Ottoni, Angelina, Verbeken, Annemieke, Dutta, Arun Kumar, Cui, Bao-Kai, Pradeep, C. K., Marín, César, Stanton, Daniel, Gohar, Daniyal, Wanasinghe, Dhanushka N., Otsing, Eveli, Aslani, Farzad, Griffith, Gareth W., Lumbsch, Thorsten H., Grossart, Hans-Peter, Masigol, Hossein, Timling, Ina, Hiiesalu, Inga, Oja, Jane, Kupagme, John Y., Geml, József, Alvarez-Manjarrez, Julieta, Ilves, Kai, Loit, Kaire, Adamson, Kalev, Nara, Kazuhide, Küngas, Kati, Rojas-Jimenez, Keilor, Bitenieks, Krišs, Irinyi, László, Nagy, László G., Soonvald, Liina, Zhou, Li-Wei, Wagner, Lysett, Aime, M. Catherine, Öpik, Maarja, Mujica, María Isabel, Metsoja, Martin, Ryberg, Martin, Vasar, Martti, Murata, Masao, Nelsen, Matthew P., Cleary, Michelle, Samarakoon, Milan C., Doilom, Mingkwan, Bahram, Mohammad, Hagh-Doust, Niloufar, Dulya, Olesya, Johnston, Peter, Kohout, Petr, Chen, Qian, Tian, Qing, Nandi, Rajasree, Amiri, Rasekh, Perera, Rekhani Hansika, dos Santos Chikowski, Renata, Mendes-Alvarenga, Renato L., Garibay-Orijel, Roberto, Gielen, Robin, Phookamsak, Rungtiwa, Jayawardena, Ruvishika S., Rahimlou, Saleh, Karunarathna, Samantha C., Tibpromma, Saowaluck, Brown, Shawn P., Sepp, Siim-Kaarel, Mundra, Sunil, Luo, Zhu-Hua, Bose, Tanay, Vahter, Tanel, Netherway, Tarquin, Yang, Teng, May, Tom, Varga, Torda, Li, Wei, Coimbra, Victor Rafael Matos, de Oliveira, Virton Rodrigo Targino, de Lima, Vitor Xavier, Mikryukov, Vladimir S., Lu, Yongzhong, Matsuda, Yosuke, Miyamoto, Yumiko, Kõljalg, Urmas, and Tedersoo, Leho

Published
2021
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12. FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

Author

Põlme, Sergei, Abarenkov, Kessy, Henrik Nilsson, R., Lindahl, Björn D., Clemmensen, Karina Engelbrecht, Kauserud, Havard, Nguyen, Nhu, Kjøller, Rasmus, Bates, Scott T., Baldrian, Petr, Frøslev, Tobias Guldberg, Adojaan, Kristjan, Vizzini, Alfredo, Suija, Ave, Pfister, Donald, Baral, Hans-Otto, Järv, Helle, Madrid, Hugo, Nordén, Jenni, Liu, Jian-Kui, Pawlowska, Julia, Põldmaa, Kadri, Pärtel, Kadri, Runnel, Kadri, Hansen, Karen, Larsson, Karl-Henrik, Hyde, Kevin David, Sandoval-Denis, Marcelo, Smith, Matthew E., Toome-Heller, Merje, Wijayawardene, Nalin N., Menolli, Jr., Nelson, Reynolds, Nicole K., Drenkhan, Rein, Maharachchikumbura, Sajeewa S. N., Gibertoni, Tatiana B., Læssøe, Thomas, Davis, William, Tokarev, Yuri, Corrales, Adriana, Soares, Adriene Mayra, Agan, Ahto, Machado, Alexandre Reis, Argüelles-Moyao, Andrés, Detheridge, Andrew, de Meiras-Ottoni, Angelina, Verbeken, Annemieke, Dutta, Arun Kumar, Cui, Bao-Kai, Pradeep, C. K., Marín, César, Stanton, Daniel, Gohar, Daniyal, Wanasinghe, Dhanushka N., Otsing, Eveli, Aslani, Farzad, Griffith, Gareth W., Lumbsch, Thorsten H., Grossart, Hans-Peter, Masigol, Hossein, Timling, Ina, Hiiesalu, Inga, Oja, Jane, Kupagme, John Y., Geml, József, Alvarez-Manjarrez, Julieta, Ilves, Kai, Loit, Kaire, Adamson, Kalev, Nara, Kazuhide, Küngas, Kati, Rojas-Jimenez, Keilor, Bitenieks, Krišs, Irinyi, Laszlo, Nagy, László G., Soonvald, Liina, Zhou, Li-Wei, Wagner, Lysett, Aime, M. Catherine, Öpik, Maarja, Mujica, María Isabel, Metsoja, Martin, Ryberg, Martin, Vasar, Martti, Murata, Masao, Nelsen, Matthew P., Cleary, Michelle, Samarakoon, Milan C., Doilom, Mingkwan, Bahram, Mohammad, Hagh-Doust, Niloufar, Dulya, Olesya, Johnston, Peter, Kohout, Petr, Chen, Qian, Tian, Qing, Nandi, Rajasree, Amiri, Rasekh, Perera, Rekhani Hansika, dos Santos Chikowski, Renata, Mendes-Alvarenga, Renato L., Garibay-Orijel, Roberto, Gielen, Robin, Phookamsak, Rungtiwa, Jayawardena, Ruvishika S., Rahimlou, Saleh, Karunarathna, Samantha C., Tibpromma, Saowaluck, Brown, Shawn P., Sepp, Siim-Kaarel, Mundra, Sunil, Luo, Zhu-Hua, Bose, Tanay, Vahter, Tanel, Netherway, Tarquin, Yang, Teng, May, Tom, Varga, Torda, Li, Wei, Coimbra, Victor Rafael Matos, de Oliveira, Virton Rodrigo Targino, de Lima, Vitor Xavier, Mikryukov, Vladimir S., Lu, Yongzhong, Matsuda, Yosuke, Miyamoto, Yumiko, Kõljalg, Urmas, and Tedersoo, Leho

Published
2020
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18. Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales.

Author

Wu, Gang, Miyauchi, Shingo, Morin, Emmanuelle, Kuo, Alan, Drula, Elodie, Varga, Torda, Kohler, Annegret, Feng, Bang, Cao, Yang, Lipzen, Anna, Daum, Christopher, Hundley, Hope, Pangilinan, Jasmyn, Johnson, Jenifer, Barry, Kerrie, LaButti, Kurt, Ng, Vivian, Ahrendt, Steven, Min, Byoungnam, and Choi, In‐Geol

Subjects
PLANT enzymes, GENES, GENE families, OXIDOREDUCTASES, LIGNOCELLULOSE, LACCASE, LIPASES
Abstract

Summary: We aimed to identify genomic traits of transitions to ectomycorrhizal ecology within the Boletales by comparing the genomes of 21 symbiotrophic species with their saprotrophic brown‐rot relatives.Gene duplication rate is constant along the backbone of Boletales phylogeny with large loss events in several lineages, while gene family expansion sharply increased in the late Miocene, mostly in the Boletaceae.Ectomycorrhizal Boletales have a reduced set of plant cell‐wall‐degrading enzymes (PCWDEs) compared with their brown‐rot relatives. However, the various lineages retain distinct sets of PCWDEs, suggesting that, over their evolutionary history, symbiotic Boletales have become functionally diverse. A smaller PCWDE repertoire was found in Sclerodermatineae. The gene repertoire of several lignocellulose oxidoreductases (e.g. laccases) is similar in brown‐rot and ectomycorrhizal species, suggesting that symbiotic Boletales are capable of mild lignocellulose decomposition. Transposable element (TE) proliferation contributed to the higher evolutionary rate of genes encoding effector‐like small secreted proteins, proteases, and lipases. On the other hand, we showed that the loss of secreted CAZymes was not related to TE activity but to DNA decay.This study provides novel insights on our understanding of the mechanisms influencing the evolutionary diversification of symbiotic boletes. [ABSTRACT FROM AUTHOR]

Published
2022
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19. Five years investigation of female and male genotypes in périgord black truffle ( Tuber melanosporum Vittad.) revealed contrasted reproduction strategies.

Author

De la Varga, Herminia, Le Tacon, François, Lagoguet, Mélanie, Todesco, Flora, Varga, Torda, Miquel, Igor, Barry ‐ Etienne, Dominique, Robin, Christophe, Halkett, Fabien, Martin, Francis, and Murat, Claude

Subjects
TRUFFLES, ASCOMYCETES, ECTOMYCORRHIZAL fungi, FUNGAL reproduction, ASCOSPORES, GENOTYPES
Abstract

The Périgord black truffle ( Tuber melanosporum Vittad.) is a heterothallic ascomycete that establishes ectomycorrhizal symbiosis with trees and shrubs. Small-scale genetic structures of female genotypes in truffle orchards are known, but it has not yet been studied in male genotypes. In this study, our aim was to characterize the small-scale genetic structure of both male and female genotypes over five years in an orchard to better understand the T. melanosporum sexual reproduction strategy, male genotype dynamics, and origins. Two-hundred forty-one ascocarps, 475 ectomycorrhizas, and 20 soil cores were harvested and genotyped using microsatellites and mating type genes. Isolation by distance analysis revealed pronounced small-scale genetic structures for both female and male genotypes. The genotypic diversity was higher for male than female genotypes with numerous small size genotypes suggesting an important turnover due to ascospore recruitment. Larger and perennial female and male genotypes were also detected. Only three genotypes (1.5%) were found as both female and male genotypes (hermaphrodites) while most were detected only as female or male genotype (dioecy). Our results suggest that germinating ascospores act as male genotypes, but we also proposed that soil mycelium could be a reservoir of male genotypes. [ABSTRACT FROM AUTHOR]

Published
2017
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20. Changes of hypogeous funga in the Carpathian-Pannonian region in the past centuries.

Author

BRATEK, ZOLTÁN, MERÉNYI, ZSOLT, and VARGA, TORDA

Subjects
HYPOGEOUS fungi, DISTRIBUTION (Probability theory), SPECIES, TRUFFLES, TAXONOMY
Abstract

The exploration of hypogeous fungi in the Carpathian-Pannonian region speeded up in the past decades, owing to the widespread of truffle hunting with dogs. As a result, not only several new species were found in the region, but our view of the frequency of truffles also changed fundamentally. It became evident that Tuber aestivum, T. brumale, T. macrosporum, T. magnatum, T. mesentericum and Mattirolomyces terfezioides can be collected in commercial quantity. Among the dog preferred hypogeous fungi (DPH) several species, earlier believed to be rare like Octaviania asterosperma and Stephensia bombycina, also occurred. The taxonomic alterations and revisions brought about changes in the list of hypogeous fungi, and further changes are expected from molecular taxonomy research on a number of genera at present. [ABSTRACT FROM AUTHOR]

Published
2013
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