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The number of non-native invasive pests and pathogens has increased dramatically in recent years, with disastrous consequences for the health of forests worldwide. Multiple studies have shown that mixed forests may suffer less damage from insect pests than single species forest. This “associational resistance” can be notably explained by the fact that heterospecific neighbours make it more difficult for herbivores to locate and then exploit their host tree. However, the validity of these findings in the case of non-native, invasive pests and pathogens remains to be demonstrated. In this study, we monitored over two hundred Douglas firs in pure and mixed plots of a tree diversity experiment to assess the damage from the non-native gall midge Contarinia pseudotsugae and the non-native needle cast Nothophaeocryptopus gaeumannii. The probability of Swiss needle-cast infection was lower in Douglas fir trees surrounded by heterospecific neighbours. Gall midge damage was lower on Douglas firs surrounded by taller neighbours, consistent with the hypothesis of reduced host Apparency. Douglas fir trees that were more damaged by C. pseudotsugae were also more often infected by N. gaeumannii. Our study thus provides partial support of the associational resistance hypothesis of mixed forests against exotic pests and pathogens. Promoting forest species diversity at the stand level could, therefore, offer interesting prospects for reducing the impact of biological invasions, especially those involving both pests and pathogens.

Summary: Adipose tissue plays a central role in age-related diseases. While RNAseq protocols exist for many tissues, few data have been generated with this technology to explore gene expression in adipocytes, particularly during aging. Here, we present a protocol to analyze the transcriptional changes that occur in adipose tissue during normal and accelerated aging in mouse models. We describe steps for genotyping, diet control, euthanasia, and dissection. We then detail RNA purification and genome-wide data generation and analysis.For complete details on the use and execution of this protocol, please refer to De Cauwer et al. (2022) iScience. Sep 16;25(10):105149. : Publisher’s note: Undertaking any experimental protocol requires adherence to local institutional guidelines for laboratory safety and ethics.

The natural enemies hypothesis predicts that the abundance and diversity of antagonists such as predators and parasitoids of herbivores increases with the diversity of plants, which can lead to more effective top-down control of insect herbivores. However, although the hypothesis has received large support in agricultural systems, fewer studies have been conducted in forest ecosystems and a comprehensive synthesis of previous research is still lacking.We conducted a meta-analysis of 65 publications comparing the diversity, abundance or activity of various groups of natural enemies (including birds, bats, spiders and insect parasitoids) in pure vs. mixed forest stands. We tested the effects of forest biome, natural enemy taxon and type of study (managed vs experimental forest).We found a significant positive effect of forest tree diversity on natural enemy abundance and diversity but not on their activity. The effect of tree diversity on natural enemies was stronger towards lower latitudes but was not contingent on the natural enemy taxon level.Overall, our study contributes toward a better understanding of the “natural enemies hypothesis” in forest systems and provides new insights about the mechanisms involved. Furthermore, we outline potential avenues for strengthening forest resistance to the growing threat of herbivorous insects.

Summary: Age-related diseases are major concern in developed countries. To avoid disabilities that accompany increased lifespan, pharmaceutical approaches are considered. Therefore, appropriate animal models are required for a better understanding of aging processes and potential in vivo assays to evaluate the impact of molecules that may delay the occurrence of age-related diseases. Few mouse models exhibiting pathological aging exist, but currently, none of them reproducibly mimics human diseases like osteoporosis, cognitive dysfunctions or sarcopenia that can be seen in some, but not all, elders. Here, we describe the premature aging phenotypes of Dicer-deficient mature animals, which exhibit an overall deterioration of many organs and tissues (skin, heart, and adipose tissue) ultimately leading to a significant reduction of their lifespan. Molecular characterization of transcriptional responses focused on the adipose tissue suggested that both canonical and non-canonical functions of DICER are involved in this process and highlight potential actionable pathways to revert it.

Insect herbivory is an important component of forest ecosystems functioning and can affect tree growth and survival. Tree diversity is known to influence insect herbivory in natural forest, with most studies reporting a decrease in herbivory with increasing tree diversity. Urban ecosystems, on the other hand, differ in many ways from the forest ecosystem and the drivers of insect herbivory in cities are still debated. We monitored 48 urban trees from five species – three native and two exotic – in three parks of Montreal (Canada) for leaf insect herbivory and predator activity on artificial larvae, and linked herbivory with both predation and tree diversity in the vicinity of focal trees. Leaf insect herbivory decreased with increasing tree diversity and with increasing predator attack rate. Our findings indicate that tree diversity is a key determinant of multitrophic interactions between trees, herbivores and predators in urban environments and that managing tree diversity could contribute to pest control in cities.

There has been accumulating evidence for effects of tree species composition on herbivory with many examples of lower damage by specialist feeders in tree species rich forests. In a joint study in five Central and Southeastern European countries, we studied the effect of tree species richness on infestation intensity of the oak lace bug, Corythucha arcuata (Say) (Heteroptera, Tingidae), an invasive pest on oak trees that has spread rapidly across the Balkan Peninsula and Central Europe. Intensity of infestation by C. arcuata on oaks was assessed on three or four study plots with high (pure stands) and three or four plots with low percentage of oak (mixed stands) in each country. Ordinal regression analysis showed that intensity of infestation of trees by C. arcuata differed between countries; no significant effect of stand type (mixed or pure) on infestation levels was detected. When analysing the percentage of trees in the highest infestation class, stand type had a significant effect with more intensive infestation in pure stands. We conclude that mixed stands will not prevent severe infestation but may help mitigating the impact of established C. arcuata populations. [ABSTRACT FROM AUTHOR]

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The number of non-native invasive pests and pathogens has increased dramatically in recent years, with disastrous consequences for the health of forests worldwide. Multiple studies have shown that mixed forests may suffer less damage from insect pests than single species forest. This "associational resistance" can be notably explained by the fact that heterospecific neighbours make it more difficult for herbivores to locate and then exploit their host tree. However, the validity of these findings in the case of nonnative, invasive pests and pathogens remains to be demonstrated. In this study, we monitored over two hundred Douglas firs in pure and mixed plots of a tree diversity experiment to assess the damage from the non-native gall midge Contarinia pseudotsugae and the non-native needle cast Nothophaeocryptopus gaeumannii. The probability of Swiss needle-cast infection was lower in Douglas fir trees surrounded by heterospecific neighbours. Gall midge damage was lower on Douglas firs surrounded by taller neighbours, consistent with the hypothesis of reduced host Apparency. Douglas fir trees that were more damaged by C. pseudotsugae were also more often infected by N. gaeumannii. Our study thus provides partial support of the associational resistance hypothesis of mixed forests against exotic pests and pathogens. Promoting forest species diversity at the stand level could, therefore, offer interesting prospects for reducing the impact of biological invasions, especially those involving both pests and pathogens. [ABSTRACT FROM AUTHOR]

A new three-scale model to describe the coupling between pH-dependent flows and transient ion transport, including adsorption phenomena in kaolinite clays, is proposed. The kaolinite is characterized by three separate nano/micro and macroscopic length scales. The pore (micro)-scale is characterized by micro-pores saturated by an aqueous solution containing four monovalent ions and charged solid particles surrounded by thin electrical double layers. The movement of the ions is governed by the Nernst-Planck equations, and the influence of the double layers upon the flow is dictated by the Helmholtz-Smoluchowski slip boundary condition on the tangential velocity. In addition, an adsorption interface condition for the Na+ transportis postulated to capture its retention in the electrical double layer. Thetwo-scalenano/micro model including salt adsorption and slip boundary condition is homogenized to the Darcy scale and leads to the derivation of macroscopic governing equations. One of the notable features of the three-scale model is there construction of the constitutive law of effective partition coefficient that governs the sodium adsorption in the double layer. To illustrate the feasibility of the three-scale model in simulating soil decontamination by electrokinetics, the macroscopic model is discretized by the finite volume method and the desalination of a kaolinite sample by electrokinetics is simulated.Neste artigo propomos um modelo em três escalas para descrever o acoplamento entre o fluxo eletroosmótico e o transporte de íons incluindo fenômenos de adsorção em uma caulinita. A argila é caracterizada por três escalas nano/micro e macroscópica. A escala microscópica é constituída por micro-poros saturados por uma solução aquosa contendo quatro íons monovalentes e partículas sólidas carregadas eletricamente circundadas por uma dupla camada elétrica fina. O movimento dos íons é governado pelas equações de Nernst-Planck e a influência da dupla camada sobre o fluxo aquoso é modelada por uma condição de contorno de deslizamento da componente tangencial do campo de velocidade (condição de Helmholtz-Smoluchowski). Além disso, uma condição de adsorção na interface fluido-sólido para os íons Na+ é postulada capturando a retenção do sódio na dupla camada elétrica. O modelo em duas escalas nano/micro incluindo a adsorção do sal e a condição de deslizamento da velocidade é homogeneizado levando a derivação das equações macroscópicas na escala de Darcy. Um dos aspectos inovadores do modelo em três escalas é a reconstrução da lei constitutiva para o coeficiente de partição que governa a adsorção do Na+ na dupla camada elétrica. Para ilustrar as potencialidades do modelo em três escalas na simulação da eletroremediação de solos argilosos, o modelo macroscópico é discretizado utilizando o método de volumes finitos no intuito de simular a dessalinização de uma amostra de caulinita por técnica de eletrocinética.

Following chemotherapy, a mediastinal germ cell tumor can lead to a mature teratoma that is composed of tissues derived from all three germ layers. Although teratoma is usually curable, in rare cases it can give rise to various somatic tumors and exceptionally it undergoes melanocytic neuroectodermal tumor (MNT) transformation, a process that is not well-described. We report a patient with a postchemotherapy thymic teratoma associated with an MNT component who, 10 years later, additionally presented a vertebral metastasis corresponding to an anaplastic MNT. Using exome sequencing of the mature teratoma, the MNT and its metastatic vertebral anaplastic MNT components, we identified 19 somatic mutations shared by at least two components. Six mutations were common to all three components, and three of them were located in the known cancer-related genes KRAS (p.E63K), TP53 (p.P222X), and POLQ (p.S447P). Gene set enrichment analysis revealed that the melanoma tumorigenesis pathway was enriched in mutated genes including the four major driver genes KRAS, TP53, ERBB4, and KDR, indicating that these genes may be involved in the development of the anaplastic MNT transformation of the teratoma. To our knowledge, this is the first molecular study realized on MNT. Understanding the clinicopathological and molecular characteristics of these tumors is essential to better understand their development and to improve therapeutics. [ABSTRACT FROM AUTHOR]

The G2019S mutation in the multidomain protein leucine-rich repeat kinase 2 (LRRK2) is one of the most frequently identified genetic causes of Parkinson's disease (PD). Clinically, LRRK2(G2019S) carriers with PD and idiopathic PD patients have a very similar disease with brainstem and cortical Lewy pathology (α-synucleinopathy) as histopathological hallmarks. Some patients have Tau pathology. Enhanced kinase function of the LRRK2(G2019S) mutant protein is a prime suspect mechanism for carriers to develop PD but observations in LRRK2 knock-out, G2019S knock-in and kinase-dead mutant mice suggest that LRRK2 steady-state abundance of the protein also plays a determining role. One critical question concerning the molecular pathogenesis in LRRK2(G2019S) PD patients is whether α-synuclein (aSN) has a contributory role. To this end we generated mice with high expression of either wildtype or G2019S mutant LRRK2 in brainstem and cortical neurons. High levels of these LRRK2 variants left endogenous aSN and Tau levels unaltered and did not exacerbate or otherwise modify α-synucleinopathy in mice that co-expressed high levels of LRRK2 and aSN in brain neurons. On the contrary, in some lines high LRRK2 levels improved motor skills in the presence and absence of aSN-transgene-induced disease. Therefore, in many neurons high LRRK2 levels are well tolerated and not sufficient to drive or exacerbate neuronal α-synucleinopathy.

Hosting both tsunami earthquakes and slow slip events at shallow depth, the northern Hikurangi margin has motivated strong research efforts over the last two decades to better understand the relation between fluid pressure and fault mechanical behavior. Recently, IODP Expeditions 372 and 375 drilled, cored, and logged the basin entering this subduction zone providing a unique opportunity to characterize initial hydrogeological and petrophysical properties that drive seismic hazards along the margin. We inventory bound and interstitial fluid contents and assess the compaction state of the heterogeneous incoming sequence by correcting shipboard total connected porosity from the bound water content that typically characterizes clay‐rich sediments. By combining mercury injection capillary pressure, nuclear magnetic resonance, and nitrogen gas adsorption, we further document the evolution of pore structure with increasing depth. We also compare porosity data at the logging and sample scales. Both logging and laboratory data evidence contrasted porosity, pore structure, and fluid distribution across the entering section. Shallow macroporous siliciclastic units show very low bound water content and undergo compaction‐induced dewatering as they are normally consolidated during burial. In contrast, mesoporous volcaniclastic Hikurangi Plateau facies are characterized by high potential for bound water release from smectite, zeolite, and opal dehydration at greater depths. They mostly exhibit very low permeability except potentially in uncemented highly porous intervals where the décollement may initiate. Macroporous to mesoporous pelagic carbonates sandwiched in between exhibit mixed behavior and may also host the future décollement, similarly to the southern part of the margin. Key Points: The Northern Hikurangi margin input section is characterized by contrasted fluid distribution, pore structure, and potential for excess pore pressure buildupIt is essential to use corrected porosity instead of apparent porosity in clay‐rich sediments and altered oceanic crustThe future décollement may develop in the lower part of pelagic carbonates or at the top of volcaniclastic facies of the Hikurangi Plateau [ABSTRACT FROM AUTHOR]

This study describes experimental research on two-phase flow displacement using Magnetic Resonance Imaging (MRI) techniques. The overall purpose of this investigation is to determine kinetics process of phase trapping during (water-oil) two-phase flow, the front deformation and the phases saturation propagation along a vertical model. In these water flooding experiments, the porous medium model consists of packed beads of polystyrene (0.4 mm < dp < 0.6 mm) or sand grains (0.02 mm < dp < 0.50 mm). In order to conduct high accuracy experiments, a Nuclear Magnetic Resonance (NMR) spectrometer operating at 14 T (corresponding to a 600 MHz 1H resonance) equipped with an imaging device was used. With this equipment we can measure and visualize the two-phase flow in a vertical model of porous medium under ambient conditions. The obtained results have shown that the oil saturation profile is strongly influenced by the material properties such as the phase wetting, the sample porosity and permeability as well as the injection rate. The influence of flow velocity on the residual oil saturation was also studied. The experimental results allow an essential understanding of immiscible fluid displacement in two different types of porous medium that differ from each other mainly by the effects of wettability. [ABSTRACT FROM AUTHOR]

In the battle against the illicit drugs market, methodologies have been developed by forensic laboratories to address the determination of the origin and dismantlement of the trafficking route for various target molecules such as heroin and cocaine. These drug profiling methods are not straightforward, especially when the target molecules are synthetic and very pure, resulting in poorly informative impurity profiles, e.g. new psychoactive substances and cutting agents. A tool based on the determination of intramolecular isotopic profiles has been developed to provide origin discrimination with a new way to profile seized cutting agents and heroin samples. Whereas stable isotope analyses by mass spectrometry give the bulk isotopic composition, nuclear magnetic resonance gives direct access to the position‐specific isotope content at natural abundance. This report shows how both 13C NMR spectrometry and 13C, 15N MS might provide complementary and valuable information to link seized caffeine and paracetamol to their origin. Here, isotopic ratio monitoring by 13C NMR (irm‐13C NMR) offers additional benefits over irm‐MS in its capability to determine a detailed isotopic profile, leading to a better method to distinguish different caffeine and paracetamol batches. [ABSTRACT FROM AUTHOR]

• Ixodes ticks are more abundant in forests than in other types of habitat. • This difference is greater with mixed forests than with deciduous forests. • Exophilic Ixodes abundance is positively correlated with the abundance of ungulates. With increasing deforestation, questions are being raised about the risk of zoonotic disease to humans. To better assess the role of forest in the emergence of tick-borne diseases, we conducted a meta-analysis of the scientific literature to compare the abundance or diversity of ticks between forest and open habitats (natural or anthropogenic) and a meta-regression to test how tick abundance is influenced by the abundance of their vertebrate hosts in forest habitats. We found that Ixodes ticks were on average more abundant in forests than in any other non-forested habitats, the difference being more pronounced with mixed deciduous- coniferous than with deciduous forests. At the forest scale, exophilic Ixodes tick abundance was positively influenced by the abundance of their ungulate hosts. Our results suggest that mixed forests represent the habitats with the highest level of tick hazard. However, more studies are needed to assess the risk of transmission of tick-borne diseases in forests, which also depends on the prevalence of pathogens and the exposure of people. [ABSTRACT FROM AUTHOR]

The G2019S mutation in the multidomain protein leucine-rich repeat kinase 2 (LRRK2) is one of the most frequently identified genetic causes of Parkinson's disease (PD). Clinically, LRRK2(G2019S) carriers with PD and idiopathic PD patients have a very similar disease with brainstem and cortical Lewy pathology (α-synucleinopathy) as histopathological hallmarks. Some patients have Tau pathology. Enhanced kinase function of the LRRK2(G2019S) mutant protein is a prime suspect mechanism for carriers to develop PD but observations in LRRK2 knock-out, G2019S knock-in and kinase-dead mutant mice suggest that LRRK2 steady-state abundance of the protein also plays a determining role. One critical question concerning the molecular pathogenesis in LRRK2(G2019S) PD patients is whether α-synuclein (aSN) has a contributory role. To this end we generated mice with high expression of either wildtype or G2019S mutant LRRK2 in brainstem and cortical neurons. High levels of these LRRK2 variants left endogenous aSN and Tau levels unaltered and did not exacerbate or otherwise modify α-synucleinopathy in mice that co-expressed high levels of LRRK2 and aSN in brain neurons. On the contrary, in some lines high LRRK2 levels improved motor skills in the presence and absence of aSN-transgene-induced disease. Therefore, in many neurons high LRRK2 levels are well tolerated and not sufficient to drive or exacerbate neuronal α-synucleinopathy. [ABSTRACT FROM AUTHOR]

A novel vegetable oil-based polyamine issued from grapeseed oil (GSO) was prepared using cysteamine chloride (CAHC) by thiol-ene coupling (TEC). The structure of the polyamine oil (AGSO) was carefully examined using a large range of chemical analyses (FTIR, 1H NMR and 13C NMR, LC-MS...). The effects of the amination of GSO on the vegetable oil properties were also studied using viscosimetry. Then, AGSO was employed as a novel curing agent for bio-based epoxy resin. The thermal crosslinking reaction between AGSO and epoxidized linseed oil (ELO) was studied by DSC and rheology. This study also dealt with the definition of the thermomechanical properties of the final material obtained by the mixing and curing of AGSO with ELO in stoichiometric proportions. © 2011 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2011 [ABSTRACT FROM AUTHOR]

In part I (Lima et al., Transp Porous Media, 2009), a three-scale model governing the movement of an aqueous saline solution containing four monovalent species (Na, H, Cl, OH) in kaolinite clays was derived. Unlike purely macroscopic approaches, the novelty of the formulation relied on the double averaging of the nanoscopic electro- chemistry of particle/electrolyte solution interface ruled by the electrical double layer coupled with protonation/deprotonation reactions. The passage from the nano to the micro (pore)-scale gave rise to ion-sorbed concentrations and slip velocity at the solid/fluid interface which are coupled with the microscopic Stokes problem and Nernst–Planck equations governing the hydrodynamics and ion transport in the micropores. Application of a formal homogenization procedure led to macroscopic governing equations with effective electro-chemical parameters, such as retardation coefficients, electro-osmotic permeability, and electric conductivity. In this study, we reconstruct the constitutive laws of the macroscopic coefficients by solving the nano and microscopic closure problems. New generalized isotherms for Na and H − OH sorption are build-up based on a perturbation approach and the limitations of classical Freundlich isotherm for modeling ion sorption at the solid/fluid interface are discussed. The macroscopic governing equations are discretized by the finite volume method and numerical simulations of a transient electroosmosis experiment for desalination of a clay sample by electrokinetics are presented. [ABSTRACT FROM AUTHOR]

A new three-scale model to describe the coupling between electro-chemistry and hydrodynamics in non-swelling kaolinite clays in steady-state conditions is proposed. The medium is characterized by three separate nano-micro and macroscopic length scales. At the pore (micro)-scale the portrait of the clay consists of micro-pores saturated by an aqueous solution containing four monovalent ions (Na+, H+, Cl−, OH−) and charged solid particles surrounded by thin electrical double layers. The movement of the ions is governed by the Nernst–Planck equations and the influence of the double layers upon the hydrodynamics is modeled by a slip boundary condition in the tangential velocity governed by the Stokes problem. To capture the correct form of the interface condition we invoke the nanoscopic modeling of the thin electrical double layer based on Poisson–Boltzmann problem with varying surface charge density ruled by the protonation/deprotonation reactions which occur at the surface of the particles. The two-scale nano/micro model is homogenized to the macroscale leading to a precise derivation of effective governing equations. The macroscopic model is discretized by the finite volume method and applied to numerically simulate desalination of a clay sample induced by an external electrical field generated by the placement of electrodes. Numerical results indicate strong pH-dependence of the electrokinetics. [ABSTRACT FROM AUTHOR]