93 results on '"Roy RJ"'
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2. Images in cardiovascular medicine. Serial multimodality assessment of myocardial infarction in mice using magnetic resonance imaging and micro-positron emission tomography provides complementary information on the progression of scar formation.
- Author
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Berr SS, Xu Y, Roy RJ, Kundu B, Williams MB, French BA, Berr, Stuart S, Xu, Yaqin, Roy, R Jack, Kundu, Bijoy, Williams, Mark B, and French, Brent A
- Published
- 2007
3. Methamphetamine-related working memory difficulties underpinned by reduced frontoparietal responses.
- Author
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Roy RJ, Parvaz MA, Wakabayashi KT, Blair RJR, and Hubbard NA
- Subjects
- Humans, Male, Adult, Female, Cross-Sectional Studies, Memory Disorders chemically induced, Memory Disorders physiopathology, Young Adult, Central Nervous System Stimulants pharmacology, Neuropsychological Tests, Brain Mapping methods, Memory, Short-Term drug effects, Methamphetamine, Magnetic Resonance Imaging, Parietal Lobe physiopathology, Parietal Lobe diagnostic imaging, Parietal Lobe drug effects, Amphetamine-Related Disorders physiopathology, Amphetamine-Related Disorders diagnostic imaging, Frontal Lobe diagnostic imaging, Frontal Lobe physiopathology, Frontal Lobe drug effects
- Abstract
Working memory difficulties are common, debilitating, and may pose barriers to recovery for people who use methamphetamine. Yet, little is known regarding the neural dysfunctions accompanying these difficulties. Here, we acquired cross-sectional, functional magnetic resonance imaging while people with problematic methamphetamine-use experience (MA
+ , n = 65) and people without methamphetamine-use experience (MA- , n = 44) performed a parametric n-back task (0-back through 2-back). Performance on tasks administered outside of the scanner, together with n-back performance, afforded to determine a latent dimension of participants' working memory ability. Behavioural results indicated that MA+ participants exhibited lower scores on this dimension compared to MA- participants (d = -1.39, p < .001). Whole-brain imaging results also revealed that MA+ participants exhibited alterations in load-induced responses predominantly in frontoparietal and default-mode areas. Specifically, while the MA- group exhibited monotonic activation increases within frontoparietal areas and monotonic decreases within default-mode areas from 0-back to 2-back, MA+ participants showed a relative attenuation of these load-induced activation patterns (d = -1.55, p < .001). Moreover, increased activations in frontoparietal areas from 0- to 2-back were related to greater working memory ability among MA+ participants (r = .560, p = .004). No such effects were observed for default-mode areas. In sum, reductions in working memory ability were observed alongside load-induced dysfunctions in frontoparietal and default-mode areas for people with problematic methamphetamine-use experience. Among them, load-induced activations within frontoparietal areas were found to have a strong and specific relationship to individual differences in working memory ability, indicating a putative neural signature of the working memory difficulties associated with chronic methamphetamine use., (© 2024 The Author(s). Addiction Biology published by John Wiley & Sons Ltd on behalf of Society for the Study of Addiction.)- Published
- 2024
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4. Progressive Cardiac Metabolic Defects Accompany Diastolic and Severe Systolic Dysfunction in Spontaneously Hypertensive Rat Hearts.
- Author
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Li J, Minczuk K, Huang Q, Kemp BA, Howell NL, Chordia MD, Roy RJ, Patrie JT, Qureshi Z, Kramer CM, Epstein FH, Carey RM, Kundu BK, and Keller SR
- Subjects
- Rats, Animals, Rats, Inbred SHR, Tomography, X-Ray Computed, Rats, Inbred WKY, Glucose, Deoxyglucose, Blood Pressure, Hypertension, Heart Failure
- Abstract
Background Cardiac metabolic abnormalities are present in heart failure. Few studies have followed metabolic changes accompanying diastolic and systolic heart failure in the same model. We examined metabolic changes during the development of diastolic and severe systolic dysfunction in spontaneously hypertensive rats (SHR). Methods and Results We serially measured myocardial glucose uptake rates with dynamic 2-[
18 F] fluoro-2-deoxy-d-glucose positron emission tomography in vivo in 9-, 12-, and 18-month-old SHR and Wistar Kyoto rats. Cardiac magnetic resonance imaging determined systolic function (ejection fraction) and diastolic function (isovolumetric relaxation time) and left ventricular mass in the same rats. Cardiac metabolomics was performed at 12 and 18 months in separate rats. At 12 months, SHR hearts, compared with Wistar Kyoto hearts, demonstrated increased isovolumetric relaxation time and slightly reduced ejection fraction indicating diastolic and mild systolic dysfunction, respectively, and higher (versus 9-month-old SHR decreasing) 2-[18 F] fluoro-2-deoxy-d-glucose uptake rates (Ki). At 18 months, only few SHR hearts maintained similar abnormalities as 12-month-old SHR, while most exhibited severe systolic dysfunction, worsening diastolic function, and markedly reduced 2-[18 F] fluoro-2-deoxy-d-glucose uptake rates. Left ventricular mass normalized to body weight was elevated in SHR, more pronounced with severe systolic dysfunction. Cardiac metabolite changes differed between SHR hearts at 12 and 18 months, indicating progressive defects in fatty acid, glucose, branched chain amino acid, and ketone body metabolism. Conclusions Diastolic and severe systolic dysfunction in SHR are associated with decreasing cardiac glucose uptake, and progressive abnormalities in metabolite profiles. Whether and which metabolic changes trigger progressive heart failure needs to be established.- Published
- 2023
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5. CASSPER is a semantic segmentation-based particle picking algorithm for single-particle cryo-electron microscopy.
- Author
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George B, Assaiya A, Roy RJ, Kembhavi A, Chauhan R, Paul G, Kumar J, and Philip NS
- Subjects
- Animals, Humans, Models, Molecular, Protein Conformation, Semantics, Cryoelectron Microscopy, Deep Learning, Image Processing, Computer-Assisted, Proteins ultrastructure, Single Molecule Imaging
- Abstract
Particle identification and selection, which is a prerequisite for high-resolution structure determination of biological macromolecules via single-particle cryo-electron microscopy poses a major bottleneck for automating the steps of structure determination. Here, we present a generalized deep learning tool, CASSPER, for the automated detection and isolation of protein particles in transmission microscope images. This deep learning tool uses Semantic Segmentation and a collection of visually prepared training samples to capture the differences in the transmission intensities of protein, ice, carbon, and other impurities found in the micrograph. CASSPER is a semantic segmentation based method that does pixel-level classification and completely eliminates the need for manual particle picking. Integration of Contrast Limited Adaptive Histogram Equalization (CLAHE) in CASSPER enables high-fidelity particle detection in micrographs with variable ice thickness and contrast. A generalized CASSPER model works with high efficiency on unseen datasets and can potentially pick particles on-the-fly, enabling data processing automation.
- Published
- 2021
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6. Metformin Improves Cardiac Metabolism and Function, and Prevents Left Ventricular Hypertrophy in Spontaneously Hypertensive Rats.
- Author
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Li J, Minćzuk K, Massey JC, Howell NL, Roy RJ, Paul S, Patrie JT, Kramer CM, Epstein FH, Carey RM, Taegtmeyer H, Keller SR, and Kundu BK
- Subjects
- AMP-Activated Protein Kinases metabolism, Animals, Disease Models, Animal, Fatty Acids metabolism, Glucose metabolism, Hypertension metabolism, Hypertension physiopathology, Hypertrophy, Left Ventricular metabolism, Hypertrophy, Left Ventricular physiopathology, Oxidation-Reduction, Oxidative Stress drug effects, Rats, Inbred SHR, Rats, Inbred WKY, TOR Serine-Threonine Kinases metabolism, Arterial Pressure drug effects, Cardiovascular Agents pharmacology, Energy Metabolism drug effects, Hypertension drug therapy, Hypertrophy, Left Ventricular prevention & control, Metformin pharmacology, Myocardium metabolism, Ventricular Function, Left drug effects, Ventricular Remodeling drug effects
- Abstract
Background In spontaneously hypertensive rats (SHR) we observed profound myocardial metabolic changes during early hypertension before development of cardiac dysfunction and left ventricular hypertrophy. In this study, we evaluated whether metformin improved myocardial metabolic abnormalities and simultaneously prevented contractile dysfunction and left ventricular hypertrophy in SHR. Methods and Results SHR and control Wistar-Kyoto rats were treated with metformin from 2 to 5 months of age, when SHR hearts exhibit metabolic abnormalities and develop cardiac dysfunction and left ventricular hypertrophy. We evaluated the effect of metformin on myocardial glucose uptake rates with dynamic 2-[
18 F] fluoro-2-deoxy-D-glucose positron emission tomography. We used cardiac MRI in vivo to assess the effect of metformin on ejection fraction, left ventricular mass, and end-diastolic wall thickness, and also analyzed metabolites, AMP-activated protein kinase and mammalian target-of-rapamycin activities, and mean arterial blood pressure. Metformin-treated SHR had lower mean arterial blood pressure but remained hypertensive. Cardiac glucose uptake rates, left ventricular mass/tibia length, wall thickness, and circulating free fatty acid levels decreased to normal, and ejection fraction improved in treated SHR. Hearts of treated SHR exhibited increased AMP-activated protein kinase phosphorylation and reduced mammalian target-of-rapamycin activity. Cardiac metabolite profiling demonstrated that metformin decreased fatty acyl carnitines and markers of oxidative stress in SHR. Conclusions Metformin reduced blood pressure, normalized myocardial glucose uptake, prevented left ventricular hypertrophy, and improved cardiac function in SHR. Metformin may exert its effects by normalizing myocardial AMPK and mammalian target-of-rapamycin activities, improving fatty acid oxidation, and reducing oxidative stress. Thus, metformin may be a new treatment to prevent or ameliorate chronic hypertension-induced left ventricular hypertrophy.- Published
- 2020
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7. Equation of state and first principles prediction of the vibrational matrix shift of solid parahydrogen.
- Author
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Ibrahim A, Wang L, Halverson T, Le Roy RJ, and Roy PN
- Abstract
We generate the equation of state (EOS) of solid parahydrogen (para-H
2 ) using a path-integral Monte Carlo (PIMC) simulation based on a highly accurate first-principles adiabatic hindered rotor potential energy curve for the para-H2 dimer. The EOS curves for the fcc and hcp structures of solid para-H2 near the equilibrium density show that the hcp structure is the more stable of the two, in agreement with experiment. To accurately reproduce the structural and energy properties of solid para-H2 , we eliminated by extrapolation the systematic errors associated with the choice of simulation parameters used in the PIMC calculation. We also investigate the temperature dependence of the EOS curves, and the invariance of the equilibrium density with temperature is satisfyingly reproduced. The pressure as a function of density and the compressibility as a function of pressure are both calculated using the obtained EOS and are compared with previous simulation results and experiments. We also report the first ever a priori prediction of a vibrational matrix shift from first-principles two-body potential functions, and its result for the equilibrium state agrees well with experiment.- Published
- 2019
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8. Suppression of Parahydrogen Superfluidity in a Doped Nanoscale Bose Fluid Mixture.
- Author
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Li H, Zhang XL, Zeng T, Le Roy RJ, and Roy PN
- Abstract
Helium (^{4}He) nanodroplets provide a unique environment to observe the microscopic origins of superfluidity. The search for another superfluid substance has been an ongoing quest in the field of quantum fluids. Nearly two decades ago, experiments on doped parahydrogen (p-H_{2}) clusters embedded in ^{4}He droplets displayed anomalous spectroscopic signatures that were interpreted as a sign of the superfluidity of p-H_{2} [S. Grebenev et al., Science 289, 1532 (2000)SCIEAS0036-807510.1126/science.289.5484.1532]. Here, we observe, using first-principles quantum Monte Carlo simulations, a phase separation between a symmetric and localized p-H_{2} core and ^{4}He shells. The p-H_{2} core has minimal superfluid response. These findings are consistent with the recorded spectra but not with their original interpretation, and lead us to conclude that doped p-H_{2} clusters form a nonsuperfluid core in ^{4}He droplets.
- Published
- 2019
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9. Metabolic Changes in Spontaneously Hypertensive Rat Hearts Precede Cardiac Dysfunction and Left Ventricular Hypertrophy.
- Author
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Li J, Kemp BA, Howell NL, Massey J, Mińczuk K, Huang Q, Chordia MD, Roy RJ, Patrie JT, Davogustto GE, Kramer CM, Epstein FH, Carey RM, Taegtmeyer H, Keller SR, and Kundu BK
- Subjects
- Animals, Disease Models, Animal, Disease Progression, Heart Ventricles diagnostic imaging, Heart Ventricles metabolism, Hypertension etiology, Hypertension physiopathology, Hypertrophy, Left Ventricular etiology, Hypertrophy, Left Ventricular physiopathology, Male, Positron-Emission Tomography, Rats, Rats, Inbred SHR, Rats, Inbred WKY, Tomography, X-Ray Computed, Blood Pressure physiology, Heart Ventricles physiopathology, Hypertension metabolism, Hypertrophy, Left Ventricular metabolism, Myocardium pathology, Oxidative Stress, Ventricular Function, Left physiology
- Abstract
Background Sustained pressure overload leads to changes in cardiac metabolism, function, and structure. Both time course and causal relationships between these changes are not fully understood. Therefore, we studied spontaneously hypertensive rats (SHR) during early hypertension development and compared them to control Wistar Kyoto rats. Methods and Results We serially evaluated myocardial glucose uptake rates (Ki) with dynamic 2-[
18 F] fluoro-2-deoxy-D-glucose positron emission tomography, and ejection fraction and left ventricular mass to body weight ratios with cardiac magnetic resonance imaging in vivo, determined glucose uptake and oxidation rates in isolated perfused hearts, and analyzed metabolites, mammalian target of rapamycin activity and endoplasmic reticulum stress in dissected hearts. When compared with Wistar Kyoto rats, SHR demonstrated increased glucose uptake rates (Ki) in vivo, and reduced ejection fraction as early as 2 months of age when hypertension was established. Isolated perfused SHR hearts showed increased glucose uptake and oxidation rates starting at 1 month. Cardiac metabolite analysis at 2 months of age revealed elevated pyruvate, fatty acyl- and branched chain amino acid-derived carnitines, oxidative stress, and inflammation. Mammalian target of rapamycin activity increased in SHR beginning at 2 months. Left ventricular mass to body weight ratios and endoplasmic reticulum stress were elevated in 5 month-old SHR. Conclusions Thus, in a genetic hypertension model, chronic cardiac pressure overload promptly leads to increased myocardial glucose uptake and oxidation, and to metabolite abnormalities. These coincide with, or precede, cardiac dysfunction while left ventricular hypertrophy develops only later. Myocardial metabolic changes may thus serve as early diagnostic markers for hypertension-induced left ventricular hypertrophy.- Published
- 2019
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10. Serial MRI Imaging Reveals Minimal Impact of Ketogenic Diet on Established Liver Tumor Growth.
- Author
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Byrne FL, Hargett SR, Lahiri S, Roy RJ, Berr SS, Caldwell SH, and Hoehn KL
- Abstract
Rodent models of liver tumorigenesis have reproducibly shown that dietary sugar intake is a powerful driver of liver tumor initiation and growth. In contrast, dietary sugar restriction with ketogenic diets or calorie restriction generally prevents liver tumor formation. Ketogenic diet is viewed positively as a therapeutic adjuvant; however, most ketogenic diet studies described to date have been performed in prevention mode rather than treatment mode. Therefore, it remains unclear whether a ketogenic diet can be administered in late stages of disease to stall or reverse liver tumor growth. To model the clinically relevant treatment mode, we administered a ketogenic diet to mice after liver tumor initiation and monitored tumor growth by magnetic resonance imaging (MRI). Male C57BL/6 mice were injected with diethylnitrosamine (DEN) at 2 weeks of age and fed a chow diet until 39 weeks of age, when they underwent MRI imaging to detect liver tumors. Mice were then randomised into two groups and fed either a chow diet or switched to a ketogenic diet from 40⁻48 weeks of age. Serial MRIs were performed at 44 and 48 weeks of age. All mice had tumors at study completion and there were no differences in total tumor burden between diet groups. Although a ketogenic diet has marked protective effects against DEN-induced liver tumourigenesis in this mouse model, these data demonstrate that ketogenic diet cannot stop the progression of established liver tumors.
- Published
- 2018
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11. A novel chronic advanced stage abdominal aortic aneurysm murine model.
- Author
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Lu G, Su G, Davis JP, Schaheen B, Downs E, Roy RJ, Ailawadi G, and Upchurch GR Jr
- Subjects
- Animals, Aorta, Abdominal metabolism, Aortic Aneurysm, Abdominal blood, Aortic Aneurysm, Abdominal pathology, Aortic Rupture chemically induced, Chronic Disease, Cytokines blood, Dilatation, Pathologic, Disease Models, Animal, Disease Progression, Inflammation Mediators blood, Male, Mice, Inbred C57BL, Thrombosis chemically induced, Time Factors, Aminopropionitrile analogs & derivatives, Aorta, Abdominal pathology, Aortic Aneurysm, Abdominal chemically induced, Pancreatic Elastase
- Abstract
Objective: The purpose of this study was to establish a reliable, chronic model of abdominal aortic aneurysm (AAA)., Methods: Wild-type 8-week-old C56BL/6 male mice (n = 120) were equally divided into three groups: (1) BAPN group: 0.2% 3-aminopropionitrile fumarate salt (BAPN) drinking water was provided to mice 2 days before surgery until the end of study. Sham aneurysm induction surgery was performed using 5 μL of heat deactivated elastase. (2) Elastase group: mice were given regular drinking water without BAPN. During aneurysm induction surgery, 5 μL of the active form of elastase (10.3 mg protein/mL, 5.9 U/mg protein) was applied on top of the infrarenal abdominal aorta adventitia for 5 minutes. (3) BAPN+elastase group: mice were given BAPN drinking water and the active form of elastase application, as above. On postoperative days 7, 14, 21, 28, and 100, aortic samples were collected for histology, cytokine array, and gelatin zymography after aortic diameter measurement., Results: Compared with the elastase group, the BAPN+elastase group had a higher AAA formation rate (93% vs 65%; P < .01) with more advanced AAAs (25 of 42 vs 1 of 40 for stage II and III; P < .001). Aneurysms from the BAPN+elastase group demonstrated persistent long-term growth (221.5% ± 36.6%, 285.8% ± 78.6%, and 801% ± 160% on days 21, 28, and 100, respectively; P < .001), with considerable thrombus formation (54%) and rupture (31%) at the advanced stages of AAA development. Cytokine levels (pro-matrix metalloproteinase 9, interleukin-1β, interleukin-6, chemokine [C-C motif] ligand 5, triggering receptor expressed on myeloid cells 1, monocyte chemotactic protein 1, and tissue inhibitor of metalloproteinase 1) in the BAPN+elastase group were higher than in the elastase group on day 7. After day 7, cytokine levels returned to baseline, with the exception of elevated matrix metalloproteinase 2 activity. By histology, CD3-positive T cells in the BAPN+elastase group were elevated on days 28 and 100., Conclusions: A combination of oral BAPN administration and periaortic elastase application induced a chronic, advanced-stage AAA with characteristics of persistent aneurysm growth, thrombus formation, and spontaneous rupture. Future studies should use this model, especially for examining tissue remodeling during the late stages of aneurysm development., (Copyright © 2016 Society for Vascular Surgery. Published by Elsevier Inc. All rights reserved.)
- Published
- 2017
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12. Reviews of Modeling Techniques for Neuromonitoring Depth of Anesthesia.
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Zhang XS, Huang JW, and Roy RJ
- Subjects
- Algorithms, Anesthesiology standards, Fuzzy Logic, Humans, Monitoring, Intraoperative methods, Anesthesia methods, Anesthesia standards, Anesthesiology methods, Intraoperative Neurophysiological Monitoring methods, Models, Biological
- Abstract
This article reviews the various modeling techniques for neuromonitoring depth of anesthesia (DOA). Traditional techniques such as parametric, predictive, optimal, and adaptive modeling; proportional, integral, derivative (PID) modeling; together with modern techniques such as bispectral-based, artificial neural-network-based, fuzzy logic, and neuro-fuzzy modeling, bring us to the current state of the art in DOA neuromonitoring. This article reviews historical information about each of the modern techniques and provides an example demonstrating its implementation; reviews drug pharmacokinetic/pharmacodynamic (PK/PD) and drug interaction PK/PD modeling techniques for a balanced total intravenous anesthesia (TIVA) administration; and discusses the existing technical problems and clinical challenges, suggesting new techniques necessary for the future development of a DOA monitoring and control system.
- Published
- 2017
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13. Full empirical potential curves for the X(1)Σ(+) and A(1)Π states of CH(+) from a direct-potential-fit analysis.
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Cho YS and Le Roy RJ
- Abstract
All available "conventional" absorption/emission spectroscopic data have been combined with photodissociation data and translational spectroscopy data in a global analysis that yields analytic potential energy and Born-Oppenheimer breakdown functions for the X(1)Σ(+) and A(1)Π states of CH(+) and its isotopologues that reproduce all of the data (on average) within their assigned uncertainties. For the ground X(1)Σ(+) state, this fully quantum mechanical "Direct-Potential-Fit" analysis yielded an improved empirical well depth of 𝔇e = 34 362.8(3) cm(-1) and equilibrium bond length of re = 1.128 462 5 (58) Å. For the A(1)Π state, the resulting well depth and equilibrium bond length are 𝔇e = 10 303.7(3) cm(-1) and re = 1.235 896 (14) Å, while the electronic isotope shift from the hydride to the deuteride is ΔTe = - 5.99(±0.08) cm(-1).
- Published
- 2016
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14. Raman Vibrational Shifts of Small Clusters of Hydrogen Isotopologues.
- Author
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Schmidt M, Fernández JM, Faruk N, Nooijen M, Le Roy RJ, Morilla JH, Tejeda G, Montero S, and Roy PN
- Abstract
Raman vibrational shifts of small parahydrogen (pH2), orthodeuterium (oD2), and paratritium (pT2) clusters with respect to the free molecules are calculated by combining a first order perturbation theory approach with Langevin equation Path Integral Ground State (LePIGS) simulations [ J. Phys. Chem. A 2013 , 117 , 7461 ]. Our theoretical predictions are compared to existing cryogenic free jet expansion results for pure (pH2)N clusters [ Phys. Rev. Lett. 2004 , 92 , 223401 ] and to new measurements for (oD2)N clusters reported here. This method has been successfully used before to predict the Raman vibrational shifts of (pH2)N clusters [ J. Chem. Phys. 2014 , 141 , 014310 ]. The 6-D interaction potential of Hinde [ J. Chem. Phys. 2008 , 128 , 154308 ] is reduced to 1-D using the Adiabatic Hindered Rotor approximation to yield effective pair potentials for both molecules being in the ground vibrational state, and for one of them carrying one quantum of vibrational excitation. These reduced 1-D potentials are fitted to a Morse Long Range analytic form for later convenience. Good agreement between experiment and theory is found for the smaller clusters, but significant deviations remain for the larger ones.
- Published
- 2015
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15. Accelerated dual-contrast first-pass perfusion MRI of the mouse heart: development and application to diet-induced obese mice.
- Author
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Naresh NK, Chen X, Roy RJ, Antkowiak PF, Annex BH, and Epstein FH
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- Animals, Contrast Media administration & dosage, Diet, High-Fat, Mice, Mice, Inbred C57BL, Myocardial Ischemia etiology, Myocardial Perfusion Imaging, Obesity complications, Obesity diagnosis, Reproducibility of Results, Sensitivity and Specificity, Fractional Flow Reserve, Myocardial, Image Interpretation, Computer-Assisted methods, Magnetic Resonance Angiography methods, Myocardial Ischemia diagnosis, Myocardial Ischemia physiopathology, Obesity physiopathology
- Abstract
Purpose: Gene-modified mice may be used to elucidate molecular mechanisms underlying abnormal myocardial blow flow (MBF). We sought to develop a quantitative myocardial perfusion imaging technique for mice and to test the hypothesis that myocardial perfusion reserve (MPR) is reduced in a mouse model of diet-induced obesity (DIO)., Methods: A dual-contrast saturation-recovery sequence with ky -t undersampling and a motion-compensated compressed sensing reconstruction algorithm was developed for first-pass MRI on a small-bore 7 Tesla system. Control mice were imaged at rest and with the vasodilators ATL313 and Regadenoson (n = 6 each). In addition, we imaged mice fed a high-fat diet (HFD) for 24 weeks., Results: In control mice, MBF was 5.7 ± 0.8 mL/g/min at rest and it increased to 11.8 ± 0.6 mL/g/min with ATL313 and to 10.4 ± 0.3 mL/g/min with Regadenoson. In HFD mice, we detected normal resting MBF (5.6 ± 0.4 versus 5.0 ± 0.3 on control diet), low MBF at stress (7.7 ± 0.4 versus 10.4 ± 0.3 on control diet, P < 0.05), and reduced MPR (1.4 ± 0.2 versus 2.0 ± 0.3 on control diet, P < 0.05)., Conclusion: Accelerated dual-contrast first-pass MRI with motion-compensated compressed sensing provides spatiotemporal resolution suitable for measuring MBF in free-breathing mice, and detected reduced MPR in DIO mice. These techniques may be used to study molecular mechanisms that underlie abnormal myocardial perfusion., (© 2014 Wiley Periodicals, Inc.)
- Published
- 2015
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16. Dissociation energies and potential energy functions for the ground X (1)Σ(+) and "avoided-crossing" A (1)Σ(+) states of NaH.
- Author
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Walji SD, Sentjens KM, and Le Roy RJ
- Abstract
A direct-potential-fit analysis of all accessible data for the A (1)Σ(+) - X (1)Σ(+) system of NaH and NaD is used to determine analytic potential energy functions incorporating the correct theoretically predicted long-range behaviour. These potentials represent all of the data (on average) within the experimental uncertainties and yield an improved estimate for the ground-state NaH well depth of 𝔇e = 15797.4 (±4.3) cm(-1), which is ∼20 cm(-1) smaller than the best previous estimate. The present analysis also yields the first empirical determination of centrifugal (non-adiabatic) and potential-energy (adiabatic) Born-Oppenheimer breakdown correction functions for this system, with the latter showing that the A-state electronic isotope shift is -1.1(±0.6) cm(-1) going from NaH to NaD.
- Published
- 2015
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17. First-principles prediction of the Raman shifts in parahydrogen clusters.
- Author
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Faruk N, Schmidt M, Li H, Le Roy RJ, and Roy PN
- Abstract
We report a first-principles prediction of the Raman shifts of parahydrogen (pH2) clusters of sizes N = 4-19 and 33, based on path integral ground-state simulations with an ab initio potential energy surface. The Raman shifts are calculated, using perturbation theory, as the average of the difference-potential energy surface between the potential energy surfaces for vibrationally excited and ground-state parahydrogen monomers. The radial distribution of the clusters is used as a weight function in this average. Very good overall agreement with experiment [G. Tejeda, J. M. Fernández, S. Montero, D. Blume, and J. P. Toennies, Phys. Rev. Lett. 92, 223401 (2004)] is achieved for p(H2)(2-8,13,33). A number of different pair potentials are employed for the calculation of the radial distribution functions. We find that the Raman shifts are sensitive to slight variations in the radial distribution functions.
- Published
- 2014
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18. Ultracold heteronuclear mixture of ground and excited state atoms.
- Author
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Khramov A, Hansen A, Dowd W, Roy RJ, Makrides C, Petrov A, Kotochigova S, and Gupta S
- Abstract
We report on the realization of an ultracold mixture of lithium atoms in the ground state and ytterbium atoms in an excited metastable (3P2) state. Such a mixture can support broad magnetic Feshbach resonances which may be utilized for the production of ultracold molecules with an electronic spin degree of freedom, as well as novel Efimov trimers. We investigate the interaction properties of the mixture in the presence of an external magnetic field and find an upper limit for the background interspecies two-body inelastic decay coefficient of K2'<3×10(-12) cm3/s for the 3P2 mJ=-1 substate. We calculate the dynamic polarizabilities of the Yb(3P2) magnetic substates for a range of wavelengths, and find good agreement with our measurements at 1064 nm. Our calculations also allow the identification of magic frequencies where Yb ground and metastable states are identically trapped and the determination of the interspecies van der Waals coefficients.
- Published
- 2014
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19. Accurate analytic potential and Born-Oppenheimer breakdown functions for MgH and MgD from a direct-potential-fit data analysis.
- Author
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Henderson RD, Shayesteh A, Tao J, Haugen CC, Bernath PF, and Le Roy RJ
- Abstract
New high-resolution visible Fourier transform emission spectra of the A (2)Π → X (2)Σ(+) and B' (2)Σ(+) → X (2)Σ(+) systems of (24)MgD and of the B' (2)Σ(+) → X (2)Σ(+) systems of (25,26)MgD and (25,26)MgH have been combined with earlier results for (24)MgH in a multi-isotopologue direct-potential-fit analysis to yield improved analytic potential energy and Born-Oppenheimer breakdown functions for the ground X (2)Σ(+) state of MgH. Vibrational levels of the ground state of (24)MgD were observed up to v" = 15, which is bound by only 30.6 ± 0.10 cm(-1). Including deuteride and minor magnesium isotopologue data allowed us also to determine the adiabatic Born-Oppenheimer breakdown effects in this molecule. The fitting procedure used the recently developed Morse/Long-Range (MLR) potential energy function, whose asymptotic behavior incorporates the correct inverse-power form. A spin-splitting radial correction function to take account of the (2)Σ spin-rotation interaction was also determined. Our refined value for the ground-state dissociation energy of the dominant isotopologue ((24)MgH) is D(e) = 11,104.25 ± 0.8 cm (-1), in which the uncertainty also accounts for the model dependence of the fitted D(e) values for a range of physically acceptable fits. We were also able to determine the marked difference in the well depths of (24)MgH and (24)MgD (with the deuteride potential curve being 7.58 ± 0.30 cm(-1) deeper than that of the hydride) as well as smaller well-depth differences for the minor (25,26)Mg isotopologues. This analytic potential function also predicts that the highest bound level of (24)MgD is v" = 16 and that it is bound by only 2.73 ± 0.10 cm(-1).
- Published
- 2013
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20. Analytic Morse/long-range potential energy surfaces and predicted infrared spectra for CO-H2 dimer and frequency shifts of CO in (para-H2)N N = 1-20 clusters.
- Author
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Li H, Zhang XL, Le Roy RJ, and Roy PN
- Abstract
A five-dimensional ab initio potential energy surface (PES) for CO-H2 that explicitly incorporates dependence on the stretch coordinate of the CO monomer has been calculated. Analytic four-dimensional PESs are obtained by least-squares fitting vibrationally averaged interaction energies for vCO = 0 and 1 to the Morse/long-range potential function form. These fits to 30,206 points have root-mean-square (RMS) deviations of 0.087 and 0.082 cm(-1), and require only 196 parameters. The resulting vibrationally averaged PESs provide good representations of the experimental infrared data: for infrared transitions of para H2-CO and ortho H2-CO, the RMS discrepancies are only 0.007 and 0.023 cm(-1), which are almost in the same accuracy as those values of 0.010 and 0.018 cm(-1) obtained from full six-dimensional ab initio PESs of V12 [P. Jankowski, A. R. W. McKellar, and K. Szalewicz, Science 336, 1147 (2012)]. The calculated infrared band origin shift associated with the fundamental of CO is -0.179 cm(-1) for para H2-CO, which is the same value as that extrapolated experimental value, and slightly better than the value of -0.176 cm(-1) obtained from V12 PESs. With these potentials, the path integral Monte Carlo algorithm and a first order perturbation theory estimate are used to simulate the CO vibrational band origin frequency shifts of CO in (para H2)N-CO clusters for N = 1-20. The predicted vibrational frequency shifts are in excellent agreement with available experimental observations. Comparisons are also made between these model potentials.
- Published
- 2013
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21. A new six-dimensional potential energy surface for H2-N2O and its adiabatic-hindered-rotor treatment.
- Author
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Wang L, Xie D, Le Roy RJ, and Roy PN
- Abstract
A six-dimensional ab initio potential energy surface (PES) for H2-N2O which explicitly includes the symmetric and asymmetric vibrational coordinates Q1 and Q3 of N2O is calculated at the coupled-cluster singles and doubles with noniterative inclusion of connected triple level using an augmented correlation-consistent polarized-valence quadruple-zeta basis set together with midpoint bond functions. Four-dimensional intermolecular PESs are then obtained by fitting the vibrationally averaged interactions energies for υ3(N2O) = 0 and 1 to the Morse∕long-range analytical form. In the fits, fixing the long-range parameters at theoretical values smoothes over the numerical noise in the ab initio points in the long-range region of the potential. Using the adiabatic hindered-rotor approximation, two-dimensional PESs for hydrogen-N2O complexes with different isotopomers of hydrogen are generated by averaging the 4D PES over the rotation of the hydrogen molecule within the complex. The band-origin shifts for the hydrogen-N2O dimers calculated using both the 4D PESs and the angle-averaged 2D PESs are all in good agreement with each other and with the available experimental observations. The predicted infrared transition frequencies for para-H2-N2O and ortho-D2-N2O are also consistent with the observed spectra.
- Published
- 2013
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22. On the analytical representation of free energy profiles with a Morse/long-range model: application to the water dimer.
- Author
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Tritzant-Martinez Y, Zeng T, Broom A, Meiering E, Le Roy RJ, and Roy PN
- Subjects
- Computer Simulation, Monte Carlo Method, Models, Molecular, Thermodynamics, Water chemistry
- Abstract
We investigate the analytical representation of potentials of mean force (pmf) using the Morse/long-range (MLR) potential approach. The MLR method had previously been used to represent potential energy surfaces, and we assess its validity for representing free-energies. The advantage of the approach is that the potential of mean force data only needs to be calculated in the short to medium range region of the reaction coordinate while the long range can be handled analytically. This can result in significant savings in terms of computational effort since one does not need to cover the whole range of the reaction coordinate during simulations. The water dimer with rigid monomers whose interactions are described by the commonly used TIP4P model [W. Jorgensen and J. Madura, Mol. Phys. 56, 1381 (1985)] is used as a test case. We first calculate an "exact" pmf using direct Monte Carlo (MC) integration and term such a calculation as our gold standard (GS). Second, we compare this GS with several MLR fits to the GS to test the validity of the fitting procedure. We then obtain the water dimer pmf using metadynamics simulations in a limited range of the reaction coordinate and show how the MLR treatment allows the accurate generation of the full pmf. We finally calculate the transition state theory rate constant for the water dimer dissociation process using the GS, the GS MLR fits, and the metadynamics MLR fits. Our approach can yield a compact, smooth, and accurate analytical representation of pmf data with reduced computational cost.
- Published
- 2013
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23. Glucose regulation of load-induced mTOR signaling and ER stress in mammalian heart.
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Sen S, Kundu BK, Wu HC, Hashmi SS, Guthrie P, Locke LW, Roy RJ, Matherne GP, Berr SS, Terwelp M, Scott B, Carranza S, Frazier OH, Glover DK, Dillmann WH, Gambello MJ, Entman ML, and Taegtmeyer H
- Subjects
- Animals, Humans, In Vitro Techniques, Male, Rats, Rats, Sprague-Dawley, Signal Transduction, Endoplasmic Reticulum Stress physiology, Glucose physiology, Heart physiology, TOR Serine-Threonine Kinases physiology
- Abstract
Background: Changes in energy substrate metabolism are first responders to hemodynamic stress in the heart. We have previously shown that hexose-6-phosphate levels regulate mammalian target of rapamycin (mTOR) activation in response to insulin. We now tested the hypothesis that inotropic stimulation and increased afterload also regulate mTOR activation via glucose 6-phosphate (G6P) accumulation., Methods and Results: We subjected the working rat heart ex vivo to a high workload in the presence of different energy-providing substrates including glucose, glucose analogues, and noncarbohydrate substrates. We observed an association between G6P accumulation, mTOR activation, endoplasmic reticulum (ER) stress, and impaired contractile function, all of which were prevented by pretreating animals with rapamycin (mTOR inhibition) or metformin (AMPK activation). The histone deacetylase inhibitor 4-phenylbutyrate, which relieves ER stress, also improved contractile function. In contrast, adding the glucose analogue 2-deoxy-d-glucose, which is phosphorylated but not further metabolized, to the perfusate resulted in mTOR activation and contractile dysfunction. Next we tested our hypothesis in vivo by transverse aortic constriction in mice. Using a micro-PET system, we observed enhanced glucose tracer analog uptake and contractile dysfunction preceding dilatation of the left ventricle. In contrast, in hearts overexpressing SERCA2a, ER stress was reduced and contractile function was preserved with hypertrophy. Finally, we examined failing human hearts and found that mechanical unloading decreased G6P levels and ER stress markers., Conclusions: We propose that glucose metabolic changes precede and regulate functional (and possibly also structural) remodeling of the heart. We implicate a critical role for G6P in load-induced mTOR activation and ER stress.
- Published
- 2013
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24. A new four-dimensional ab initio potential energy surface for N2O-He and vibrational band origin shifts for the N2O-He(N) clusters with N = 1-40.
- Author
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Wang L, Xie D, Le Roy RJ, and Roy PN
- Subjects
- Algorithms, Monte Carlo Method, Surface Properties, Vibration, Helium chemistry, Nitrous Oxide chemistry, Quantum Theory
- Abstract
A new four-dimensional ab initio potential energy surface for N(2)O-He is constructed at the CCSD(T) level with an aug-cc-pVQZ basis set together with bond functions. The vibrational coordinates Q(1) and Q(3) of N(2)O are explicitly included, due to the strong coupling between the symmetric and asymmetric stretches of N(2)O. A global potential energy surface is obtained by fitting the original potential points to a four-dimensional Morse∕long range (MLR) analytical form. In the fitting, the ab initio noise in the long range region of the potential is smoothed over by theoretically fixed long range parameters. Two-dimensional intermolecular potentials for both the ground and the excited υ(3) states of N(2)O are then constructed by vibrationally averaging the four-dimensional potential. Based on the two-dimensional potentials, we use the path integral Monte Carlo algorithm to calculate the vibrational band origin shifts for the N(2)O-He(N) clusters using a first order perturbation theory estimate. The calculated shifts agree reasonably well with the experimental values and reproduce the evolution tendency from dimer to large clusters.
- Published
- 2012
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25. Persistent molecular superfluid response in doped para-hydrogen clusters.
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Raston PL, Jäger W, Li H, Le Roy RJ, and Roy PN
- Abstract
Direct observation of superfluid response in para-hydrogen (p-H(2)) remains a challenge because of the need for a probe that would not induce localization and a resultant reduction in superfluid fraction. Earlier work [H. Li, R. J. Le Roy, P.-N. Roy, and A. R. W. McKellar, Phys. Rev. Lett. 105, 133401 (2010)] has shown that carbon dioxide can probe the effective inertia of p-H(2) although larger clusters show a lower superfluid response due to localization. It is shown here that the lighter carbon monoxide probe molecule allows one to measure the effective inertia of p-H(2) clusters while maintaining a maximum superfluid response with respect to dopant rotation. Microwave spectroscopy and a theoretical analysis based on Feynman path-integral simulations are used to support this conclusion.
- Published
- 2012
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26. A nonpeptide angiotensin II type 2 receptor agonist does not attenuate postmyocardial infarction left ventricular remodeling in mice.
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Jehle AB, Xu Y, Dimaria JM, French BA, Epstein FH, Berr SS, Roy RJ, Kemp BA, Carey RM, and Kramer CM
- Subjects
- Angiotensin II Type 1 Receptor Blockers pharmacology, Animals, Benzimidazoles pharmacology, Biphenyl Compounds, Coronary Occlusion complications, Disease Models, Animal, Magnetic Resonance Imaging, Male, Mice, Mice, Inbred C57BL, Myocardial Infarction physiopathology, Myocardial Reperfusion Injury drug therapy, Myocardial Reperfusion Injury physiopathology, Tetrazoles pharmacology, Time Factors, Myocardial Infarction drug therapy, Receptor, Angiotensin, Type 2 agonists, Ventricular Remodeling drug effects
- Abstract
Cardiac overexpression of the angiotensin II type 2 receptor (AT2 R) attenuates left ventricular (LV) remodeling after myocardial infarction (MI) in transgenic mice. We hypothesized that a novel nonpeptide AT2 R agonist, compound 21 (C21), would attenuate post-MI LV remodeling. Fifty-nine mice were studied for 28 days after 1-hour surgical occlusion-reperfusion of the left anterior descending coronary artery. Immediately thereafter, 23 mice received 0.3 mg·kg·d of C21 via Alzet osmotic minipump, 16 received 10 mg·kg·d of the AT1 R antagonist candesartan in drinking water, and 20 were untreated controls. Cardiac magnetic resonance imaging measured ejection fraction (EF), LV end-systolic, and end-diastolic volumes (ESVI and EDVI) indexed to weight serially post MI. Infarct size was measured on day 1 by late gadolinium-enhanced cardiac magnetic resonance imaging. At baseline, heart rate, blood pressure, EDVI, ESVI, and EF were similar between groups. Mean infarct size (42%-45% of LV mass) was similar between groups. C21-treated animals demonstrated adverse LV remodeling (increased EDVI and ESVI at all post-MI time points) compared with control. Candesartan therapy preserved left ventricular EF at day 28 compared with the C21-treated group. Thus, direct stimulation of the AT2 R by C21 at 0.3 mg·kg·d does not attenuate post-MI LV remodeling in reperfused MI in mice.
- Published
- 2012
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27. Three-dimensional phase contrast angiography of the mouse aortic arch using spiral MRI.
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Janiczek RL, Blackman BR, Roy RJ, Meyer CH, Acton ST, and Epstein FH
- Subjects
- Animals, Humans, Image Enhancement methods, Imaging, Three-Dimensional methods, Mathematics, Mice, Mice, Inbred C57BL, Mice, Transgenic, Shear Strength, Aorta, Thoracic anatomy & histology, Magnetic Resonance Imaging, Cine methods
- Abstract
Atherosclerosis is a complex disease whose spatial distribution is hypothesized to be influenced by the local hemodynamic environment. The use of transgenic mice provides a mechanism to study the relationship between hemodynamic forces, most notably wall shear stress (WSS), and the molecular factors that influence the disease process. Phase contrast MRI using rectilinear trajectories has been used to measure boundary conditions for use in computational fluid dynamic models. However, the unique flow environment of the mouse precludes use of standard imaging techniques in complex, curved flow regions such as the aortic arch. In this article, two-dimensional and three-dimensional spiral cine phase contrast sequences are presented that enable measurement of velocity profiles in curved regions of the mouse vasculature. WSS is calculated directly from the spatial velocity gradient, enabling WSS calculation with a minimal set of assumptions. In contrast to the outer radius of the aortic arch, the inner radius has a lower time-averaged longitudinal WSS (7.06 ± 0.76 dyne/cm(2) vs. 18.86 ± 1.27 dyne/cm(2) ; P < 0.01) and higher oscillatory shear index (0.14 ± 0.01 vs. 0.08 ± 0.01; P < 0.01). This finding is in agreement with humans, where WSS is lower and more oscillatory along the inner radius, an atheroprone region, than the outer radius, an atheroprotective region., (Copyright © 2011 Wiley Periodicals, Inc.)
- Published
- 2011
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28. Rapid, accurate calculation of the s-wave scattering length.
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Meshkov VV, Stolyarov AV, and Le Roy RJ
- Abstract
Transformation of the conventional radial Schrödinger equation defined on the interval r ∈ [0, ∞) into an equivalent form defined on the finite domain y(r) ∈ [a, b] allows the s-wave scattering length a(s) to be exactly expressed in terms of a logarithmic derivative of the transformed wave function φ(y) at the outer boundary point y = b, which corresponds to r = ∞. In particular, for an arbitrary interaction potential that dies off as fast as 1/r(n) for n ≥ 4, the modified wave function φ(y) obtained by using the two-parameter mapping function r(y; ̄r,β) = ̄r[1 + 1/β tan(πy/2)] has no singularities, and a(s) = ̄r[1 + 2/πβ 1/φ(1) dφ(1)/dy]. For a well bound potential with equilibrium distance r(e), the optimal mapping parameters are ̄r ≈ r(e) and β ≈ n/2 - 1. An outward integration procedure based on Johnson's log-derivative algorithm [J. Comp. Phys. 13, 445 (1973)] combined with a Richardson extrapolation procedure is shown to readily yield high precision a(s)-values both for model Lennard-Jones (2n, n) potentials and for realistic published potentials for the Xe-e(-), Cs(2)(aΣ(u)(+)(3)), and (3, 4)He(2)(XΣ(g)(+)(1)) systems. Use of this same transformed Schrödinger equation was previously shown [V. V. Meshkov et al., Phys. Rev. A 78, 052510 (2008)] to ensure the efficient calculation of all bound levels supported by a potential, including those lying extremely close to dissociation., (© 2011 American Institute of Physics)
- Published
- 2011
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29. "Adiabatic-hindered-rotor" treatment of the parahydrogen-water complex.
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Zeng T, Li H, Le Roy RJ, and Roy PN
- Abstract
Inspired by a recent successful adiabatic-hindered-rotor treatment for parahydrogen pH(2) in CO(2)-H(2) complexes [H. Li, P.-N. Roy, and R. J. Le Roy, J. Chem. Phys. 133, 104305 (2010); H. Li, R. J. Le Roy, P.-N. Roy, and A. R. W. McKellar, Phys. Rev. Lett. 105, 133401 (2010)], we apply the same approximation to the more challenging H(2)O-H(2) system. This approximation reduces the dimension of the H(2)O-H(2) potential from 5D to 3D and greatly enhances the computational efficiency. The global minimum of the original 5D potential is missing from the adiabatic 3D potential for reasons based on solution of the hindered-rotor Schrödinger equation of the pH(2). Energies and wave functions of the discrete rovibrational levels of H(2)O-pH(2) complexes obtained from the adiabatic 3D potential are in good agreement with the results from calculations with the full 5D potential. This comparison validates our approximation, although it is a relatively cruder treatment for pH(2)-H(2)O than it is for pH(2)-CO(2). This adiabatic approximation makes large-scale simulations of H(2)O-pH(2) systems possible via a pairwise additive interaction model in which pH(2) is treated as a point-like particle. The poor performance of the diabatically spherical treatment of pH(2) rotation excludes the possibility of approximating pH(2) as a simple sphere in its interaction with H(2)O., (© 2011 American Institute of Physics)
- Published
- 2011
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30. Theoretical and experimental study of weakly bound CO2-(pH2)2 trimers.
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Li H, McKellar AR, Le Roy RJ, and Roy PN
- Abstract
The infrared spectrum of CO(2)-(pH(2))(2) trimers is predicted by performing exact basis-set calculations on a global potential energy surface defined as the sum of accurately known two-body pH(2)-CO(2) (J. Chem. Phys. 2010, 132, 214309) and pH(2)-pH(2) potentials (J. Chem. Phys. 2008, 129, 094304). These results are compared with new spectroscopic measurements for this species, for which 13 transitions are now assigned. A reduced-dimension treatment of the pH(2) rotation has been employed by applying the hindered-rotor averaging technique of Li, Roy, and Le Roy (J. Chem. Phys. 2010, 133, 104305). Three-body effects and the quality of the potential are discussed. A new technique for displaying the three-dimensional pH(2) density in the body-fixed frame is used, and shows that in the ground state the two pH(2) molecules are localized much more closely together than is the case for the two He atoms in the analogous CO(2)-(He)(2) species. A clear tunneling splitting is evident for the torsional motion of the two pH(2) molecules on a ring about the CO(2) molecular axis, in contrast to the case of CO(2)-(He)(2) where a more regular progression of vibrational levels reflects the much lower torsional barrier.
- Published
- 2011
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31. Molecular superfluid: nonclassical rotations in doped para-hydrogen clusters.
- Author
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Li H, Le Roy RJ, Roy PN, and McKellar AR
- Abstract
Clusters of para-hydrogen (pH₂) have been predicted to exhibit superfluid behavior, but direct observation of this phenomenon has been elusive. Combining experiments and theoretical simulations, we have determined the size evolution of the superfluid response of pH₂ clusters doped with carbon dioxide (CO₂). Reduction of the effective inertia is observed when the dopant is surrounded by the pH₂ solvent. This marks the onset of molecular superfluidity in pH₂. The fractional occupation of solvation rings around CO₂ correlates with enhanced superfluid response for certain cluster sizes.
- Published
- 2010
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32. An "adiabatic-hindered-rotor" treatment allows para-H(2) to be treated as if it were spherical.
- Author
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Li H, Roy PN, and Le Roy RJ
- Subjects
- Surface Properties, Hydrogen chemistry, Quantum Theory
- Abstract
In para-H(2)-{molecule} interactions, the common assumption that para-H(2) may be treated as a spherical particle is often substantially in error. For example, quantum mechanical eigenvalues on a full four-dimensional (4D) potential energy surface for para H(2)-{linear molecule} species often differ substantially from those calculated from the corresponding two-dimensional (2D) surface obtained by performing a simple spherical average over the relative orientations of the H(2) moiety. However, use of an "adiabatic-hindered-rotor" approximation can yield an effective 2D surface whose spectroscopic properties are an order of magnitude closer to those yielded by a full 4D treatment.
- Published
- 2010
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33. Analytic Morse/long-range potential energy surfaces and predicted infrared spectra for CO2-H2.
- Author
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Li H, Roy PN, and Le Roy RJ
- Subjects
- Spectrophotometry, Infrared, Surface Properties, Vibration, Carbon Dioxide chemistry, Computer Simulation, Hydrogen chemistry, Quantum Theory
- Abstract
Five-dimensional ab initio potential energy surfaces (PESs) for CO(2)-H(2) that explicitly incorporate dependence on the Q(3) asymmetric-stretch normal-mode coordinate of the CO(2) monomer and are parametrically dependent on its Q(1) symmetric-stretch coordinate have been calculated. Analytic four-dimensional PESs are obtained by least-squares fitting vibrationally averaged interaction energies for v(3)(CO(2)) = 0, and 1 to the Morse/long-range potential function form. These fits to 23,113 points have root-mean-square (rms) deviations of 0.143 and 0.136 cm(-1), and require only 167 parameters. The resulting vibrationally averaged PESs provide good representations of the experimental infrared data: for infrared transitions of para- and ortho-H(2)-CO(2), the rms discrepancies are only 0.004 and 0.005 cm(-1), respectively. The calculated infrared band origin shifts associated with the nu(3) fundamental of CO(2) are -0.179 and -0.092 cm(-1) for para-H(2)-CO(2) and ortho-H(2)-CO(2), in good agreement with the (extrapolated) experimental values of -0.198 and -0.096 cm(-1).
- Published
- 2010
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34. Accurate analytic potentials for Li(2)(X (1)Sigma(g) (+)) and Li(2)(A (1)Sigma(u) (+)) from 2 to 90 A, and the radiative lifetime of Li(2p).
- Author
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Le Roy RJ, Dattani NS, Coxon JA, Ross AJ, Crozet P, and Linton C
- Abstract
Extensions of the recently introduced "Morse/long-range" (MLR) potential function form allow a straightforward treatment of a molecular state for which the inverse-power long-range potential changes character with internuclear separation. Use of this function in a direct-potential-fit analysis of a combination of new fluorescence data for (7,7)Li(2), (6,6)Li(2), and (6,7)Li(2) with previously reported data for the A((1)Sigma(u) (+)) and X((1)Sigma(g) (+)) states yields accurate, fully analytic potentials for both states, together with the analytic "adiabatic" Born-Oppenheimer breakdown radial correction functions which are responsible for the difference between the interaction potentials and well depths for the different isotopologues. This analysis yields accurate well depths of D(e)=8516.709(+/-0.004) and 8516.774(+/-0.004) cm(-1) and scattering lengths of 18.11(+/-0.05) and 23.84(+/-0.05) A for the ground-states of (7,7)Li(2) and (6,6)Li(2), respectively, as well as improved atomic radiative lifetimes of tau(2p)=27.1018(+/-0.0014) ns for (7)Li(2p) and 27.1024(+/-0.0014) ns for (6)Li(2p).
- Published
- 2009
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35. Predicted bound states and microwave spectrum of N2-He van der Waals complexes.
- Author
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Li H, Le Roy RJ, and McCourt FR
- Abstract
Numerical calculations show that four modern potential energy surfaces for N(2)-He all support 18 bound intermolecular states for the homonuclear isotopologues (14,14)N(2)-(4)He and (15,15)N(2)-(4)He, and 12 (or 13, for one surface) truly bound states for (14,15)N(2)-He. This contradicts a recent statement [Patel et al., J. Chem. Phys. 119, 909 (2003)] that one of these surfaces supports no bound states, and it yields predictions for 27 allowed pure rotational transitions among the truly bound states of the homonuclear isotopologues of this complex.
- Published
- 2009
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36. Path-integral Monte Carlo simulation of nu3 vibrational shifts for CO2 in (He)n clusters critically tests the He-CO2 potential energy surface.
- Author
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Li H, Blinov N, Roy PN, and Le Roy RJ
- Abstract
Path-integral Monte Carlo simulations of the nu(3) vibrational band origin frequency shifts of CO(2) in (He)(n) clusters for n=1-40 show that although only the asymmetric-stretch mode of CO(2) is being excited, the effect of the associated change in the average value of Q(1) cannot be ignored. When this fourth degree of freedom is taken into account, the resulting predicted vibrational frequency shifts are in excellent agreement with experiment across this whole range of cluster size. It is also shown that the quality of predictions obtained from simulations on a given potential energy surface can depend significantly on the choice of the analytic function used to represent it.
- Published
- 2009
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37. Pathways and reduced-dimension five-dimensional potential energy surface for the reactions H3+ + CO-->H2+HCO+ and H3+ + CO-->H2+HOC+.
- Author
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Li H, Hirano T, Amano T, and Le Roy RJ
- Abstract
To obtain theoretical insight regarding the stability and formation dynamics of the interstellar ions HCO(+) and HOC(+), stationary points and the associated vibrational frequencies on the full nine-dimensional potential energy surface for the electronic ground state have been calculated using coupled-cluster theory with both single and double substitutions (CCSD). The energetics were refined with a higher-level coupled-cluster method CCSD(T), with core-valence electron correlation treated at the complete basis set limit. To elucidate the formation mechanism and internal relaxation processes, the reaction paths for the reactions H(3) (+)+CO-->H(2)+HCO(+) and H(3) (+)+CO-->H(2)+HOC(+) were calculated at the second-order Moller-Plesset (MP2) level, and corresponding single-point energies were obtained at the higher CCSD(T)/aug-cc-pVTZ level. Based on the analysis of the main reaction processes, a reduced-dimension five-dimensional potential energy surface for this system was constructed from 128 440 ab initio points calculated at the CCSD(T)/aug-cc-pVTZ level.
- Published
- 2008
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38. Analytic three-dimensional 'MLR' potential energy surface for CO(2)-He, and its predicted microwave and infrared spectra.
- Author
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Li H and Le Roy RJ
- Abstract
A three-dimensional, analytic potential energy surface for CO(2)-He that explicitly incorporates its dependence on the Q(3) asymmetric-stretch normal-mode coordinate of the CO(2) monomer has been obtained by least-squares fitting new ab initio interaction energies to a new three-dimensional Morse/Long-Range (3D-MLR) potential function form. This fit to 2832 points has a root-mean-square (RMS) deviation of 0.032 cm(-1) and requires only 55 parameters. The resulting pure ab initio potential provides a good representation of the experimental microwave and infrared data: for 51 pseudo microwave and 49 infrared transitions the RMS discrepancies are 0.0110 and 0.0445 cm(-1), respectively. Scaling this surface using only two morphing parameters yields an order of magnitude better agreement with experiments, with RMS discrepancies of only 0.0025 and 0.0038 cm(-1), respectively. The calculated infrared band origin shift associated with the nu(3) fundamental of CO(2) is 0.109 cm(-1), in good agreement with the (extrapolated) experimental value of 0.095 cm(-1).
- Published
- 2008
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39. Ground state potential energy curve and dissociation energy of MgH.
- Author
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Shayesteh A, Henderson RD, Le Roy RJ, and Bernath PF
- Abstract
New high-resolution visible emission spectra of the MgH molecule have been recorded with high signal-to-noise ratios using a Fourier transform spectrometer. Many bands of the A 2Pi-->X 2Sigma+ and B' 2Sigma+-->X 2Sigma+ electronic transitions of 24MgH were analyzed; the new data span the v' = 0-3 levels of the A 2Pi and B'2Sigma+ excited states and the v''=0-11 levels of the X 2Sigma+ ground electronic state. The vibration-rotation energy levels of the perturbed A 2Pi and B' 2Sigma+ states were fitted as individual term values, while those of the X 2Sigma+ ground state were fitted using the direct-potential-fit approach. A new analytic potential energy function that imposes the theoretically correct attractive potential at long-range, and a radial Hamiltonian that includes the spin-rotation interaction were employed, and a significantly improved value for the ground state dissociation energy of MgH was obtained. The v''=11 level of the X 2Sigma+ ground electronic state was found to be the highest bound vibrational level of 24MgH, lying only about 13 cm(-1) below the dissociation asymptote. The equilibrium dissociation energy for the X 2Sigma+ ground state of 24MgH has been determined to be De=11104.7+/-0.5 cm(-1) (1.37681+/-0.00006 eV), whereas the zero-point energy (v''=0) is 739.11+/-0.01 cm(-1). The zero-point dissociation energy is therefore D0=10365.6+/-0.5 cm(-1) (1.28517+/-0.00006 eV). The uncertainty in the new experimental dissociation energy of MgH is more than 2 orders of magnitude smaller than that for the best value available in the literature. MgH is now the only hydride molecule other than H2 itself for which all bound vibrational levels of the ground electronic state are observed experimentally and for which the dissociation energy is determined with subwavenumber accuracy.
- Published
- 2007
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40. Interaction between bradykinin subtype 2 and angiotensin II type 2 receptors during post-MI left ventricular remodeling.
- Author
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Isbell DC, Voros S, Yang Z, DiMaria JM, Berr SS, French BA, Epstein FH, Bishop SP, Wang H, Roy RJ, Kemp BA, Matsubara H, Carey RM, and Kramer CM
- Subjects
- Animals, Blood Pressure, Cardiomegaly metabolism, Cardiomegaly pathology, Cardiomegaly physiopathology, Cell Size, Collagen metabolism, Disease Models, Animal, Heart Rate, Magnetic Resonance Imaging, Cine, Mice, Mice, Inbred C57BL, Mice, Knockout, Mice, Transgenic, Myocardial Infarction complications, Myocardial Infarction pathology, Myocardial Infarction physiopathology, Myocardium pathology, Myocytes, Cardiac pathology, Receptor, Angiotensin, Type 2 genetics, Receptor, Bradykinin B2 deficiency, Receptor, Bradykinin B2 genetics, Stroke Volume, Time Factors, Ventricular Pressure, Cardiomegaly etiology, Myocardial Infarction metabolism, Myocardium metabolism, Receptor, Angiotensin, Type 2 metabolism, Receptor, Bradykinin B2 metabolism, Ventricular Remodeling
- Abstract
Angiotensin II type 2 receptor (AT(2)R) overexpression (AT(2)TG) attenuates left ventricular remodeling in a mouse model of anterior myocardial infarction (MI). We hypothesized that the beneficial effects of cardiac AT(2)TG are mediated via the bradykinin subtype 2 receptor (B(2)R). Fourteen transgenic mice overexpressing the AT(2)R (AT(2)TG mice), 10 mice with a B(2)R deletion (B(2)KO mice), 13 AT(2)TG mice with B(2)R deletion (AT(2)TG/B(2)KO mice), and 11 wild-type (WT) mice were studied. All mice were on a C57BL/6 background. Mice were studied by cardiac magnetic resonance imaging at baseline and days 1, 7, and 28 after MI induced by 1 h of occlusion of the left anterior descending artery followed by reperfusion. Short-axis images from apex to base were used to compare ventricular volumes and ejection fraction (EF). At baseline, end-diastolic volume index (EDVI) and end-systolic volume index (ESVI) were lower and EF higher in AT(2)TG mice compared with the other three strains. Infarct size was similar between groups. No differences were observed in global remodeling parameters at day 28 between AT(2)TG and AT(2)TG/B(2)KO mice; however, EDVI and ESVI were lower and EF higher in both transgenic groups than in WT or B(2)KO mice. Both strains lacking B(2)R demonstrated increased collagen content and less hypertrophy in adjacent noninfarcted regions at day 28. Attenuation of postinfarct remodeling by overexpression of AT(2)R is not directly mediated via a B(2)R pathway. However, B(2)R does appear to have a role in the smaller cavity size and hyperdynamic function observed at baseline in AT(2)TG mice and in limiting collagen deposition during postinfarct remodeling.
- Published
- 2007
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41. Multi-parameter in vivo cardiac magnetic resonance imaging demonstrates normal perfusion reserve despite severely attenuated beta-adrenergic functional response in neuronal nitric oxide synthase knockout mice.
- Author
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Vandsburger MH, French BA, Helm PA, Roy RJ, Kramer CM, Young AA, and Epstein FH
- Subjects
- Adrenergic beta-Agonists pharmacology, Animals, Blood Pressure physiology, Cardiac Volume drug effects, Cardiac Volume physiology, Coronary Circulation drug effects, Coronary Circulation physiology, Dobutamine pharmacology, Heart Ventricles enzymology, Heart Ventricles pathology, Magnetic Resonance Angiography, Magnetic Resonance Imaging, Cine, Male, Mice, Mice, Inbred C57BL, Mice, Knockout, Phenotype, Piperidines pharmacology, Purinergic P1 Receptor Agonists, Systole, Vasodilation drug effects, Ventricular Dysfunction, Left pathology, Nitric Oxide Synthase Type I physiology, Ventricular Dysfunction, Left enzymology
- Abstract
Aims: The role of neuronal nitric oxide synthase (nNOS) in regulating contractile function remains controversial, and in regulating myocardial perfusion is uninvestigated. We used magnetic resonance imaging (MRI) to phenotype nNOS(-/-) and wild-type (WT) mice regarding left ventricular (LV) structure, baseline function, beta-adrenergic responsiveness, and perfusion reserve., Methods and Results: Cine MRI showed higher LV mass to end-diastolic volume ratio (2.3 +/- 0.2 mg/microL nNOS(-/-) vs. 1.7 +/- 0.1 mg/microL WT; P=0.032) and LV ejection fraction (64.9 +/- 2.1% nNOS(-/-) vs. 55.8 +/- 1.1% WT; P = 0.003) in nNOS(-/-). Myocardial tagging demonstrated similar baseline systolic circumferential strain (Ecc) in nNOS(-/-) and WT. With dobutamine, the normal change in Ecc was nearly absent in nNOS(-/-) (-0.5 +/- 0.3% nNOS(-/-) vs. -2.2 +/- 0.3% WT; P = 0.001), and the systolic strain rate (dEcc/dt) response to dobutamine seen in WT was reduced in nNOS(-/-) (-29 +/- 13%/s nNOS(-/-) vs. -106+/-16%/s WT; P = 0.001). Diastolic strain rate increased significantly with dobutamine only in WT. Arterial spin labelling showed that baseline perfusion and perfusion reserve with either dobutamine or an adenosine receptor agonist are normal in nNOS(-/-)., Conclusion: MRI provides non-invasive in vivo evidence that nNOS does not play a role in basal contractile function or myocardial perfusion, but is required for increasing cardiac inotropy and lusitropy upon beta-adrenergic stimulation.
- Published
- 2007
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42. Spectroscopic properties of MgH2, MgD2, and MgHD calculated from a new ab initio potential energy surface.
- Author
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Li H and Le Roy RJ
- Abstract
A three-dimensional potential energy surface for the ground electronic state of MgH2 has been constructed from 9030 symmetry-unique ab initio points calculated using the icMRCI+Q method with aug-cc-pVnZ basis sets for n=3, 4, and 5, with core-electron correlation calculated at the MR-ACPF level of theory using cc-pCVnZ basis sets, with both calculations being extrapolated to the complete basis set limit. Calculated spectroscopic constants of MgH2 and MgD2 are in excellent agreement with recent experimental results: for four bands of MgH2 and one band of MgD2 the root-mean-square (rms) band origin discrepancies were only 0.44 and 0.06 cm(-1), respectively, and the rms relative discrepancies in the inertial rotational constants (B[v]) were only 0.0196% and 0.0058%, respectively. Spectroscopic constants for MgHD were predicted using the same potential surface.
- Published
- 2007
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43. Quadrupole moment function and absolute infrared quadrupolar intensities for N2.
- Author
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Li H and Le Roy RJ
- Abstract
High level ab initio methods have been used to calculate values of the quadrupole moment of the ground X (1)Sigmag+ state of N2 on a dense radial mesh spanning the interval of 0.8-12.1 a.u. Detailed convergence tests indicate that the resulting equilibrium values of the quadrupole moment Theta(e)=-1.1273 a.u. and its first radial derivative dTheta(R)/dR/e=0.9604 a.u. have absolute uncertainties of 0.3% and 0.8%, respectively, and are more accurate than the best experimental values of these quantities. The calculated quadrupole moment function, together with a recently reported accurate analytic empirical potential energy function [Le Roy et al., J. Chem. Phys. 125, 164310 (2006)], is used to generate values of the radial matrix elements determining the absolute intensities of infrared vibration-rotation transitions of ground-state N2, which take full account of vibration-rotation interactions. These results should improve the reliability of the interpretations of N2 contributions to infrared atmospheric spectra.
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- 2007
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44. A full analytic potential energy curve for the a 3 Sigma+ state of KLi from a limited vibrational data set.
- Author
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Salami H, Ross AJ, Crozet P, Jastrzebski W, Kowalczyk P, and Le Roy RJ
- Abstract
Fourier transform spectra of near-infrared laser-induced fluorescence in (39)K(6)Li show transitions to high vibrational levels of both the X (1)Sigma(+) and a (3)Sigma(+) electronic states. These include 147 transitions into six vibrational levels of the a (3)Sigma(+) state, which lie between 7 and 88 cm(-1) below the dissociation asymptote. Unfortunately, their energies span less than 30% of the well depth. However, fitting those data to eigenvalues of analytical model potential functions whose outer limbs incorporate the theoretically predicted long-range form, V(R) approximately D-C(6)R(6)-C(8)R(8), yields complete, plausible potential curves for this state. The best fits converge to remarkably similar solutions which indicate that D(e)=287(+/-4) cm(-1) and R(e)=4.99(+/-0.09) A for the a (3)Sigma(+) state of KLi, with omega(e)=47.3(+/-1.4) and 44.2(+/-1.5) cm(-1) for (39)K(6)Li and (39)K(7)Li, respectively. Properties of the resulting potential are similar to those of a published ab initio potential and are consistent with those of the analogous states of Li(2), K(2), Na(2), and NaK.
- Published
- 2007
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45. An accurate analytic potential function for ground-state N2 from a direct-potential-fit analysis of spectroscopic data.
- Author
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Le Roy RJ, Huang Y, and Jary C
- Abstract
Two types of combined-isotopologue analysis have been performed on an extensive spectroscopic data set for ground-state N2 involving levels up to v=19, which is bound by half the well depth. Both a conventional Dunham-type analysis and a direct-potential-fit (DPF) analysis represent the data within (on average) the estimated experimental uncertainties. However, the Dunham-type parameters do not yield realistic predictions outside the range of the data used in the analysis, while the potential function obtained from the DPF treatment yields quantum mechanical accuracy over the data region and realistic predictions of the energies and properties of unobserved higher vibrational levels. Our DPF analysis also introduces a compact new analytic potential function form which incorporates the two leading inverse-power terms in the long-range potential.
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- 2006
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46. An accurate ab initio potential energy surface and calculated spectroscopic constants for BeH2, BeD2, and BeHD.
- Author
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Li H and Le Roy RJ
- Abstract
A three-dimensional potential energy surface for the ground electronic state of BeH(2) has been determined by three-dimensional spline interpolation over 6864 symmetry-unique ab initio points calculated at the icMRCI/aug-cc-pV5Z level and corrected for core-electron correlation computed at the MR-ACPF/cc-pCV5Z level. Calculated spectroscopic constants of BeH(2) and BeD(2) are in excellent agreement with recent experimental results: for 11 bands of BeH(2) and 5 bands of BeD(2) the root mean square (rms) band origin discrepancies were only 0.15(+/-0.09) and 0.46(+/-0.19) cm(-1), respectively, and the rms relative discrepancies in the inertial rotational constants (B([v])) were only 0.028% and 0.023%, respectively. Spectral constants for BeHD were predicted using the same potential surface. The effect of different interpolation methods on predicted potential function values and on the calculated level energies and spectroscopic constants has been examined.
- Published
- 2006
- Full Text
- View/download PDF
47. Direct-potential-fit analysis of new infrared and UV/visible A 1Sigma+-X 1Sigma+ emission spectra of AgH and AgD.
- Author
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Le Roy RJ, Appadoo DR, Anderson K, Shayesteh A, Gordon IE, and Bernath PF
- Abstract
New high-resolution infrared and UV/visible spectra of (107)AgH, (109)AgH, (107)AgD, and (109)AgD have been recorded with a Fourier transform spectrometer. The new line positions are combined with published microwave and older electronic A (1)Sigma(+)-X (1)Sigma(+) data and used, first in a decoupled analysis of the X state alone, and then in a global multi-isotopologue analysis which yields comprehensive descriptions of both the X (1)Sigma(+) and A (1)Sigma(+) states of all four isotopologues of AgH. While the A state was long believed to be heavily perturbed, it is shown that its irregular spectrum merely reflects an unusual potential function shape. A direct fit of all data to appropriate radial Hamiltonians yields analytic potential-energy functions and Born-Oppenheimer breakdown radial functions for the ground X (1)Sigma(+) and A (1)Sigma(+) states.
- Published
- 2005
- Full Text
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48. Black blood gradient echo cine magnetic resonance imaging of the mouse heart.
- Author
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Berr SS, Roy RJ, French BA, Yang Z, Gilson W, Kramer CM, and Epstein FH
- Subjects
- Animals, Blood, Image Processing, Computer-Assisted methods, Mice, Mice, Inbred C57BL, Heart anatomy & histology, Image Enhancement methods, Magnetic Resonance Imaging, Cine methods
- Abstract
A black blood gradient echo sequence for multiphase cardiac MRI of the mouse heart was implemented on a 4.7-T scanner and compared to a conventional bright blood sequence. Black blood was achieved using the double inversion recovery technique. Ten mice were imaged using both the bright and the black blood sequences, and 2 of the mice were additionally imaged using bright and black blood sequences modified to perform myocardial tagging. Manual planimetry of the images was performed by two independent observers to detect the endocardial and epicardial borders and subsequently to compute chamber volumes and myocardial mass. Weight of the excised left ventricle was used as a gold standard for myocardial mass. Bland-Altman analysis demonstrated reduced interobserver variability for the measurement of cardiac volumes using the black blood sequence compared to the bright blood sequence (95% confidence interval was -0.89-0.73 microL for black blood versus -1.86-1.28 microL for bright blood). Also, Bland-Altman analysis showed that the black blood sequence provides improved accuracy for the measurement of myocardial mass compared to the bright blood sequence (average difference between MRI versus weight was 0.9 microg for black blood and -11.2 microg for bright blood, P < 0.01). For myocardial tagging, qualitative assessment demonstrated improved endocardial border definition using the black blood sequence. Black blood cine MRI in mice provides reduced interobserver variability and improved accuracy for the measurement of myocardial volumes and mass compared to the conventional bright blood technique., (Copyright 2005 Wiley-Liss, Inc.)
- Published
- 2005
- Full Text
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49. A reliable new three-dimensional potential energy surface for H(2)-Kr.
- Author
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Wei H, Le Roy RJ, Wheatley R, and Meath WJ
- Abstract
An improved three-dimensional potential energy surface for the H(2)-Kr system is determined from a direct fit of new infrared spectroscopic data for H(2)-Kr and D(2)-Kr to a potential energy function form based on the exchange-Coulomb model for the intermolecular interaction energy. These fits require repetitive, highly accurate simulations of the observed spectra, and both the strength of the potential energy anisotropy and the accuracy of the new data make the "secular equation perturbation theory" method used in previous analyses of H(2)-(rare gas) spectra inadequate for the present work. To address this problem, an extended version of the "iterative secular equation" method was developed which implements direct Hellmann-Feynman theorem calculation of the partial derivatives of eigenvalues with respect to parameters of the Hamiltonian which are required for the fits.
- Published
- 2005
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50. Isotope effects and Born-Oppenheimer breakdown in excited singlet states of the lithium dimer.
- Author
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Adohi-Krou A, Martin F, Ross AJ, Linton C, and Le Roy RJ
- Abstract
Observation of infrared electronic transitions involving the 1 (1)Deltag state of 7Li2 has instigated an investigation of Born-Oppenheimer breakdown in four singlet electronic states correlating with (2s+2s), (2s+2p), and (2p+2p) lithium atoms. The 1 (1)Deltag state, which correlates at long range with (2p+2p) atoms, has been observed in emission from the (5p) (1)Piu Rydberg state and in 1 (1)Deltag-B (1)Piu bands, in both instances following optical-optical double-resonance excitation. The latter transition was observed previously for the lighter isotopomer, 6Li2 [C. Linton, F. Martin, P. Crozet, A. J. Ross, and R. Bacis, J. Mol. Spectrosc. 158, 445 (1993)]. By analyzing multiple-isotopomer data for several electronic systems simultaneously, we have determined the electronic isotope shifts and the leading vibrational and/or rotational Born-Oppenheimer breakdown terms for the X (1)Sigmag+, A (1)Sigmau+, B (1)Piu, and 1 (1)Deltag states of the lithium dimer. This paper also reports Fourier transform measurements of the B-X absorption spectra of 6Li2 and 7Li2, which were required to better define the bottom portion of the B (1)Piu state potential., ((c) 2004 American Institute of Physics)
- Published
- 2004
- Full Text
- View/download PDF
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