22 results on '"Pham Thu, Hang"'
Search Results
2. Impacts of the sectoral composition of growth on poverty reduction in Vietnam
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Pham, Thu Hang and Riedel, James
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- 2019
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3. Performance of the TB-LAMP diagnostic assay in reference laboratories: Results from a multicentre study
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Pham, Thu Hang, Peter, Jonathan, Mello, Fernanda C.Q., Parraga, Tommy, Lan, Nguyen Thi Ngoc, Nabeta, Pamela, Valli, Eloise, Caceres, Tatiana, Dheda, Keertan, Dorman, Susan E., Hillemann, Doris, Gray, Christen M., and Perkins, Mark D.
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- 2018
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4. Mortality and its determinants in antiretroviral treatment-naive HIV-infected children with suspected tuberculosis: an observational cohort study
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Ay, Sao Sarady, Borand, Laurence, Chan, Malen, Chea, Phalla, Dim, Bunnet, Goyet, Sophie, Marcy, Olivier, Men, Nimul Roat, Pheng, Phearavin, Ramsay, Susan, Suom, Sophea, Tarantola, Arnaud, Te, Naisim, Than, Sreymom, Ung, Sovannary, Chhuk, Chorn, Huot, Chantheany, Kath, Sang Han, Khin, Sokoeun, Kim, Peou, Lim, Kim Eng, Lim, Phary, Lim, Vannareth, Nav, Yany, Pich, Boren, Tuy, Sotharin, Ung, Vibol, Chea, Phal, Chhraing, Sengtray, Chuop, Bophal, Hem, Ramy, Heng, Phanoeurn, Huon, Seng Hap, Khum, Sokhorn, Liv, Thear, Ly, Vichea, Moch, Makara, Neou, Leakheana, Rey, Phanith, Sath, Vina, Sun, Nopheavann, Chat, Pheron, Srey, Viso, Chheang, Sitha, Hor, Putchhat, Oum, Manory, Keo, Monorea, Kou, Sokchea, Cheng, Sokleaph, Kerleguer, Alexandra, Gomgnimbou, Michel, Kabore, Antoinette, Millogo, Anselme, Nacro, Boubacar, Nikiema, Zakari, Ouedraogo, Abdul Salam, Saidou, Sawadogo, Nouctara, Moumini, Sangare/Ouattara, Diane Ursule, Sanogo, Bintou, Sib Sié, Edgard, Zingué, Dézémon, Abiguide, Roger Ngoya, Assene Ngo'o, Patrice, Ateba Ndongo, Francis, Balla, Suzanne, Bolyse Mbouchong, Verlaine, Ehongo Amanya, Jean Marie, Eyangoh, Sara, Kaiyven, Afi Leslie, Koki Ndombo, Paul, Kokola Bayanak, Samuel Walter, Mapah Kampaing, Marie Josée, Mangoya, Elizabeth, Mvogo, Minkala, Ndongo, Jean Pierre, Ngassam, Laurence, Nanda, Francine, Ndjantou, Sylviane, Ndongo, Jean Audrey, Njind Nkoum, Marcelle, Njom Lend, Anne Esther, Nkembe, Angeline, Oyanche, Marie Flore, Taguebue, Jean-Voisin, Tejiokem, Mathurin, Tetang-Moyo, Suzy, Zebaze, Sylvie Georgette, Nguyen, Thi Oanh, Nguyen, Thi Ngoc Lan, Quillet, Catherine, Quoc, Khanh Lê, To, My Huong, Tran, Thi Kim Phung, Do, Chau Giang, Nguyen, Duc Bang, Nguyen, Ngo Vi Vi, Nguyen, Thi Hieu, Nguyen, Thi Thanh Thanh, Tran, Ngoc Duong, Vo, Duy An, Dang, Thi Xuan Lan, Do, Thi Kim Phuong, Dang, Thi Thanh Tuyen, Nguyen, Hoang Chau, Pham, Ngoc Tuong Vy, Truong, Huu Khanh, Do, Chau Viet, Huynh, Bich Ngoc, Le, Thi Thanh Thuy, Nguyen, Thi Thu Hiep, Tran, Ngoc Luu, Vu, Thien An, Tran, Huu Loc, Nguyen, Manh Hoang, Nguyen, Ngoc Lan, Van Nguyen, Thi Cao, Pham, Thu Hang, Phan, Dinh Quyen, Vo, Thi Ha, Truong, Xuan Lien, Vu, Xuan Thinh, Blanche, Stéphane, Delacourt, Christophe, Berteloot, Laureline, Carcelain, Guislaine, Godreuil, Sylvain, Fournier-Nicolle, Isabelle, Msellati, Philippe, Truong Huu, Khanh, Do Chau, Viet, Tran Ngoc, Duong, Ateba-Ndongo, Francis, Tetang-Ndiang, Suzie, and Neou, Leakhena
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- 2018
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5. Performance of Xpert MTB/RIF and Alternative Specimen Collection Methods for the Diagnosis of Tuberculosis in HIV-Infected Children
- Author
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PAANTHER study group, Marcy, Olivier, Ung, Vibol, Goyet, Sophie, Borand, Laurence, Msellati, Philippe, Tejiokem, Mathurin, Thi, Ngoc Lan Nguyen, Nacro, Boubacar, Cheng, Sokleaph, Eyangoh, Sara, Pham, Thu Hang, Ouedraogo, Abdoul-Salam, Tarantola, Arnaud, Godreuil, Sylvain, Blanche, Stéphane, and Delacourt, Christophe
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- 2016
6. Mediators of the relationship between perceived social loafing and team performance among university student teams.
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Pham Thu Hang
- Subjects
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PUBLIC universities & colleges , *TEAMS , *PERFORMANCE , *SLACKERS , *COLLEGE students , *QUESTIONNAIRES - Abstract
Perceived social loafing has been found to be negatively related to team performance. However, far too little attention has been paid to the underlying mechanism of this association. The purpose of the present study is to investigate not only the direct relationship between perceived social loafing and team performance but also the indirect relationship between these two variables via mediating roles of the sucker effect/social compensation and social loafer's continuous social loafing. A questionnaire survey was conducted with 360 students of a public university in Vietnam in 2021. The current study confirmed the previous finding that perceived social loafing could negatively influence team performance. The most striking result to emerge from the data was that the sucker effect had no correlation with any other variables while social compensation and social loafer's continuous social loafing were two serial mediators in the relationship between perceived social loafing and team performance. Specifically, when students perceived that their teammates engaged in social loafing, they exerted more effort to compensate for the social loafers, this way of reaction made the social loafers continue putting forth less effort and, in consequence, the overall team performance was low. [ABSTRACT FROM AUTHOR]
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- 2023
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7. Dynamic epigenetic enhancer signatures reveal key transcription factors associated with monocytic differentiation states
- Author
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Pham, Thu-Hang, Benner, Christopher, Lichtinger, Monika, Schwarzfischer, Lucia, Hu, Yuhui, Andreesen, Reinhard, Chen, Wei, and Rehli, Michael
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- 2012
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8. Feasibility of the TBDx automated digital microscopy system for the diagnosis of pulmonary tuberculosis.
- Author
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Pamela Nabeta, Joshua Havumaki, Dang Thi Minh Ha, Tatiana Caceres, Pham Thu Hang, Jimena Collantes, Nguyen Thi Ngoc Lan, Eduardo Gotuzzo, and Claudia M Denkinger
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Medicine ,Science - Abstract
BACKGROUND:Improved and affordable diagnostic or triage tests are urgently needed at the microscopy centre level. Automated digital microscopy has the potential to overcome issues related to conventional microscopy, including training time requirement and inconsistencies in results interpretation. METHODS:For this blinded prospective study, sputum samples were collected from adults with presumptive pulmonary tuberculosis in Lima, Peru and Ho Chi Minh City, Vietnam. TBDx performance was evaluated as a stand-alone and as a triage test against conventional microscopy and Xpert, with culture as the reference standard. Xpert was used to confirm positive cases. FINDINGS:A total of 613 subjects were enrolled between October 2014 and March 2015, with 539 included in the final analysis. The sensitivity of TBDx was 62·2% (95% CI 56·6-67·4) and specificity was 90·7% (95% CI 85·9-94·2) compared to culture. The algorithm assessing TBDx as a triage test achieved a specificity of 100% while maintaining sensitivity. INTERPRETATION:While the diagnostic performance of TBDx did not reach the levels obtained by experienced microscopists in reference laboratories, it is conceivable that it would exceed the performance of less experienced microscopists. In the absence of highly sensitive and specific molecular tests at the microscopy centre level, TBDx in a triage-testing algorithm would optimize specificity and limit overall cost without compromising the number of patients receiving up-front drug susceptibility testing for rifampicin. However, the algorithm would miss over one third of patients compared to Xpert alone.
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- 2017
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9. CCAAT Enhancer-binding Protein β Regulates Constitutive Gene Expression during Late Stages of Monocyte to Macrophage Differentiation
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Pham, Thu-Hang, Langmann, Sabine, Schwarzfischer, Lucia, El Chartouni, Carol, Lichtinger, Monika, Klug, Maja, Krause, Stefan W., and Rehli, Michael
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- 2007
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10. Mechanisms of in vivo binding site selection of the hematopoietic master transcription factor PU.1
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Pham, Thu-Hang, Minderjahn, Julia, Schmidl, Christian, Hoffmeister, Helen, Schmidhofer, Sandra, Chen, Wei, Längst, Gernot, Benner, Christopher, and Rehli, Michael
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- 2013
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11. Rapid and sensitive detection of CpG-methylation using methyl-binding (MB)-PCR
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Gebhard, Claudia, Schwarzfischer, Lucia, Pham, Thu Hang, Andreesen, Reinhard, Mackensen, Andreas, and Rehli, Michael
- Published
- 2006
12. Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter.
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Duy, Phuong Nguyen, Lan, Dai Tran, Pham Thu, Hang, Thi Thu, Huong Phung, Nguyen Thanh, Ha, Pham, Ngoc Phuong, Auguy, Florence, Bui Thi Thu, Huong, Manh, Tran Bao, Cunnac, Sebastien, and Pham, Xuan Hoi
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RICE ,DNA sequencing ,XANTHOMONAS oryzae ,XANTHOMONAS diseases ,DISEASE susceptibility - Abstract
TBR225 is one of the most popular commercial rice varieties in Northern Vietnam. However, this variety is highly susceptible to bacterial leaf blight (BLB), a disease caused by Xanthomonas oryzae pv. oryzae (Xoo) which can lead to important yield losses. OsSWEET14 belongs to the SWEET gene family that encodes sugar transporters. Together with other Clade III members, it behaves as a susceptibility (S) gene whose induction by Asian Xoo Transcription-Activator-Like Effectors (TALEs) is absolutely necessary for disease. In this study, we sought to introduce BLB resistance in the TBR225 elite variety. First, two Vietnamese Xoo strains were shown to up-regulate OsSWEET14 upon TBR225 infection. To investigate if this induction is connected with disease susceptibility, nine TBR225 mutant lines with mutations in the AvrXa7, PthXo3 or TalF TALEs DNA target sequences of the OsSWEET14 promoter were obtained using the CRISPR/Cas9 editing system. Genotyping analysis of T
0 and T1 individuals showed that mutations were stably inherited. None of the examined agronomic traits of three transgene-free T2 edited lines were significantly different from those of wild-type TBR225. Importantly, one of these T2 lines, harboring the largest homozygous 6-bp deletion, displayed decreased OsSWEET14 expression as well as a significantly reduced susceptibility to a Vietnamese Xoo strains and complete resistance to another one. Our findings indicate that CRISPR/Cas9 editing conferred an improved BLB resistance to a Vietnamese commercial elite rice variety. [ABSTRACT FROM AUTHOR]- Published
- 2021
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13. Optimization of preservation solutions to execute testing on cervical smear sample.
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Le, Quang Thanh, Pham, Thanh Hai, Nguyen, Quy Thi Cam, Truong, Quoc Phong, Tam Nguyen, Thi Thanh, and Pham, Thu Hang
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DRY ice ,PROTEIN analysis ,CELL analysis ,FREEZES (Meteorology) ,TESTING laboratories - Abstract
Background: The common methods to preserve cell for protein analyses are in cold condition or treated with freeze solution and packaging in dry ice for shipping. Solution which can preserve cervical cells at room temperature is preferable and cost consuming for laboratory testing. Aims and Objective: Research and optimized the storage and transport solution for cervical sample which can preserve cells at room temperature for laboratory testing. Materials and Methods: In this study, cervical specimens were collected in 3 different preservation solutions. Storage and transport of samples was at ambient or refrigerated temperature. The effect of preservation solution and temperature was check by cell visualization under microscope and protein measurement. Results: Presence of cells were detected in all three solutions. Among those, HEPES solution can preserve the highest number of cells and at room temperature.Conclusion: HEPES solution appeared suitable to preserve cervical cytology specimens at ambient temperature for further laboratory testing at protein and DNA level. [ABSTRACT FROM AUTHOR]
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- 2021
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14. Isolation of Nontuberculous Mycobacteria in Southeast Asian and African Human Immunodeficiency Virus–infected Children With Suspected Tuberculosis.
- Author
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Group, Pediatric Asian African Network for Tuberculosis and HIV Research (PAANTHER) Study, Borand, Laurence, Lauzanne, Agathe de, Dim, Bunnet, Nacro, Boubacar, Inghammar, Malin, Delacourt, Christophe, Godreuil, Sylvain, Blanche, Stéphane, Marcy, Olivier, Nguyen, Ngoc Lan, Cheng, Sokleaph, Pham, Thu Hang, Eyangoh, Sara, Ouedraogo, Abdoul-Salam, Ung, Vibol, Msellati, Philippe, and Tejiokem, Mathurin
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DIAGNOSIS of HIV infections ,TUBERCULOSIS diagnosis ,TUBERCULOSIS risk factors ,SEVERITY of illness index ,MIXED infections ,CHILDREN - Abstract
We enrolled 427 human immunodeficiency virus–infected children (median age, 7.3 years), 59.2% severely immunodeficient, with suspected tuberculosis in Southeast Asian and African settings. Nontuberculous mycobacteria were isolated in 46 children (10.8%); 45.7% of isolates were Mycobacterium avium complex. Southeast Asian origin, age 5–9 years, and severe immunodeficiency were independently associated with nontuberculous mycobacteria isolation. Clinical Trials Registration NCT01331811. [ABSTRACT FROM AUTHOR]
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- 2019
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15. EXPRESSION OF Oryza sativa GALACTINOL SYNTHASE GENE IN MAIZE (Zea may L.).
- Author
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Pham Xuan Hoi, Huynh Thi Thu Hue, Pham Thu Hang, and Nguyen Duy Phuong
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CORN genetics ,RICE ,GENE expression in plants ,GALACTINOL synthase ,ABIOTIC stress ,PLANT adaptation - Abstract
Galactinol synthase (GolS) is a key biological catalyst for the synthesis of the raffinose oligosaccharides (RFOs) which play important roles in abiotic stress adaptation of plants, especially drought tolerance. GolS gene has been isolated on a variety of plants in order to create material resources for generating transgenic plants resistant to adverse environmental factors. In our previous research, we have isolated a GolS gene from drought stress cDNA library of Oryza sativa L. Moctuyen (named OsGolS). In this study, the expression vector pCAM-Rd/OsGolS carrying the isolated OsGolS gene under the control of stress-inducible Rd29A promoter was constructed and introduced into Agrobacterium tumefaciens LBA4404, which was used for maize transformation. PCR and Real-time PCR assay indicated that transgene was integrated in the genome of the regenerated Zea mays plants. Reverse transcription-PCR showed that the OsGolS was transcribed into mRNA in Zea mays and was highly expressed. These results provide a basis for the study of the function of OsGolS in drought responses and for the development of drought stress tolerant crops. [ABSTRACT FROM AUTHOR]
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- 2019
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16. Circulation of influenza B lineages in northern Viet Nam, 2007-2014.
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Le Thi Thanh, Pham Thu Hang, Pham Thi Hien, Nguyen Le Khanh Hang, Nguyen Co Thach, Hoang Vu Mai Phuong, Tran Thu Huong, Nguyen Vu Son, Ngo Huong Giang, and Le Quynh Mai
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INFLUENZA B virus ,SEQUENCE analysis - Abstract
Introduction: Influenza B viruses circulate throughout Viet Nam, and their activities vary by region. There have been two antigenically distinct lineages of influenza B viruses co-circulating in the past 20 years; however, only one lineage is selected as a component of contemporary trivalent seasonal influenza vaccines. To improve the understanding of circulating influenza B lineages and influenza vaccine mismatches, we report the virus lineages circulating in northern Viet Nam over an eight-year period (2007-2014). Methods: Lineages of 331 influenza B viruses were characterized by haemagglutination inhibition assay against standard reference ferret (Yamagata) and sheep (Victoria) antisera. Sequence analysis of the haemagglutinin gene was performed in 64 selected influenza B isolates. Results: The proportion of influenza B lineages changed by year. The Yamagata lineage predominated in 2007, 2008 and 2012; the Victoria lineage predominated in 2009-2014 except 2012. The two lineages showed continuous evolution over time. The Northern Hemisphere's influenza vaccine components were mismatched with the predominant circulating viruses in 2007, 2009 and 2014. Discussion: The seasonality of influenza B activity is more variable in tropical and subtropical regions than in temperate zones. Our data showed a common co-circulation of both influenza B lineages in northern Viet Nam, and it was difficult to predict which one was the predominant lineage. Quadrivalent influenza vaccines containing both lineages may improve the effectiveness of influenza vaccine programmes in the future. [ABSTRACT FROM AUTHOR]
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- 2015
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17. Prospective evaluation of GeneXpert for the diagnosis of HIV-negative pediatric TB cases.
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Do Chau Giang, Tran Ngoc Duong, Dang Thi Minh Ha, Ho Thi Nhan, Wolbers, Marcel, Nguyen Thi Quynh Nhu, Dorothee Heemskerk, Nguyen Dang Quang, Doan Thanh Phuong, Pham Thu Hang, Tran Huu Loc, Nguyen Thi Ngoc Lan, Nguyen Huy Dung, Farrar, Jeremy, and Caws, Maxine
- Subjects
TUBERCULOSIS in children ,HIV infections ,TUBERCULOSIS diagnosis ,SPUTUM examination ,HODGKIN'S disease - Abstract
Background: The GeneXpertMTB/RIF (Xpert) assay is now recommended by WHO for diagnosis of tuberculosis (TB) in children but evaluation data is limited. Methods: One hundred and fifty consecutive HIV negative children (<15 years of age) presenting with suspected TB were enrolled at a TB referral hospital in Ho Chi Minh City, Vietnam. 302 samples including sputum (n = 79), gastric fluid (n = 215), CSF (n = 3), pleural fluid (n = 4) and cervical lymphadenopathic pus (n = 1) were tested by smear, automated liquid culture (Bactec MGIT) and Xpert. Patients were classified retrospectively using the standardised case definition into confirmed, probable, possible, TB unlikely or not TB categories. Test accuracy was evaluated against 2 gold standards: [1] clinical (confirmed, probable and possible TB) and [2] 'confirmed TB' alone. Results: The median age of participants was 18 months [IQR 5-170]. When test results were aggregated by patient, the sensitivity of smear, Xpert and MGIT against clinical diagnosis as the gold standard were 9.2% (n = 12/131) [95%CI 4.2; 14.1], 20.6% (n = 27/131) [95%CI 13.7; 27.5] and 29.0% (n = 38/131) [21.2;36.8], respectively. Specificity 100% (n = 19/19), 94.7% (n = 18/19), 94.7% (n = 18/19), respectively. Xpert was more sensitive than smear (P = <0.001) and less sensitive than MGIT (P = 0.002). Conclusions: The systematic use of Xpert will increase early TB case confirmation in children and represents a major advance but sensitivity of all tests remains unacceptably low. Improved rapid diagnostic tests and algorithm approaches for pediatric TB are still an urgent research priority. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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18. Reduction in the endogenous arginine decarboxylase transcript levels in rice leads to depletion of the putrescine and spermidine pools with no concomitant changes in the expression of downstream genes in the polyamine biosynthetic pathway.
- Author
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Pham Trung-Nghia, Ludovic Bassie, Gehan Safwat, Pham Thu-Hang, Olivia Lepri, Pedro Rocha, Paul Christou, and Teresa Capell
- Subjects
ARGININE ,POLYAMINES ,RICE ,MESSENGER RNA - Abstract
We investigated whether down-regulation of arginine decarboxylase (ADC) activity and concomitant changes in polyamine levels result in changes in the expression of downstream genes in the polyamine pathway. We generated transgenic rice ( Oryza sativa L.) plants in which the rice adc gene was down-regulated by expression of its antisense oat ( Avena sativa L.) ortholog. Plants expressed the oat mRNA adc transcript at different levels. The endogenous transcript was down-regulated in five out of eight plant lineages we studied in detail. Reduction in the steady-state rice adc mRNA levels resulted in a concomitant decrease in ADC activity. The putrescine and spermidine pool was significantly reduced in plants with lower ADC activity. Expression of the rice ornithine decarboxylase ( odc), S-adenosylmethionine decarboxylase ( samdc) and spermidine synthase ( spd syn) transcripts was not affected. We demonstrate that even though levels of the key metabolites in the pathway were compromised, this did not influence steady-state transcription levels of the other genes involved in the pathway. Our results provide an insight into the different regulatory mechanisms that control gene expression in the polyamine biosynthetic pathway in plants by demonstrating that the endogenous pathway is uncoupled from manipulations that modulate polyamine levels by expression of orthologous transgenes. [ABSTRACT FROM AUTHOR]
- Published
- 2003
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19. Genome-Wide Profiling of Epigenetic and Transcription Factor Regulation In Human Macrophage Differentiation
- Author
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Pham, Thu-Hang, Lichtinger, Monika, Benner, Chris, Pape, Sabine, Schwarzfischer, Lucia, Klug, Maja, Gogol-Doering, Andreas, Hu, Yuhui, Andreesen, Reinhard, Chen, Wei, and Rehli, Michael
- Published
- 2010
- Full Text
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20. Isolation of Nontuberculous Mycobacteria in Southeast Asian and African Human Immunodeficiency Virus-infected Children With Suspected Tuberculosis.
- Author
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Borand L, de Lauzanne A, Nguyen NL, Cheng S, Pham TH, Eyangoh S, Ouedraogo AS, Ung V, Msellati P, Tejiokem M, Nacro B, Inghammar M, Dim B, Delacourt C, Godreuil S, Blanche S, and Marcy O
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- Africa epidemiology, Asia, Southeastern epidemiology, Child, Child, Preschool, Clinical Laboratory Techniques, HIV, HIV Infections epidemiology, HIV Infections microbiology, Humans, Immunologic Deficiency Syndromes microbiology, Immunologic Deficiency Syndromes virology, Mycobacterium Infections, Nontuberculous epidemiology, Mycobacterium Infections, Nontuberculous microbiology, Mycobacterium avium Complex isolation & purification, Nontuberculous Mycobacteria classification, Prospective Studies, Tuberculosis diagnosis, Tuberculosis microbiology, HIV Infections complications, Immunologic Deficiency Syndromes epidemiology, Mycobacterium Infections, Nontuberculous diagnosis, Nontuberculous Mycobacteria isolation & purification, Tuberculosis epidemiology
- Abstract
We enrolled 427 human immunodeficiency virus-infected children (median age, 7.3 years), 59.2% severely immunodeficient, with suspected tuberculosis in Southeast Asian and African settings. Nontuberculous mycobacteria were isolated in 46 children (10.8%); 45.7% of isolates were Mycobacterium avium complex. Southeast Asian origin, age 5-9 years, and severe immunodeficiency were independently associated with nontuberculous mycobacteria isolation., Clinical Trials Registration: NCT01331811., (© The Author(s) 2019. Published by Oxford University Press for the Infectious Diseases Society of America.)
- Published
- 2019
- Full Text
- View/download PDF
21. Performance of Xpert MTB/RIF and Alternative Specimen Collection Methods for the Diagnosis of Tuberculosis in HIV-Infected Children.
- Author
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Marcy O, Ung V, Goyet S, Borand L, Msellati P, Tejiokem M, Nguyen Thi NL, Nacro B, Cheng S, Eyangoh S, Pham TH, Ouedraogo AS, Tarantola A, Godreuil S, Blanche S, and Delacourt C
- Subjects
- Adolescent, Bodily Secretions microbiology, Burkina Faso, Cambodia, Cameroon, Child, Child, Preschool, Coinfection, DNA, Bacterial, Female, Humans, Infant, Infant, Newborn, Male, Mycobacterium tuberculosis genetics, Sensitivity and Specificity, Tuberculosis complications, Vietnam, HIV Infections complications, Nucleic Acid Amplification Techniques, Specimen Handling, Tuberculosis diagnosis
- Abstract
Background: The diagnosis of tuberculosis in human immunodeficiency virus (HIV)-infected children is challenging. We assessed the performance of alternative specimen collection methods for tuberculosis diagnosis in HIV-infected children using Xpert MTB/RIF (Xpert)., Methods: HIV-infected children aged ≤13 years with suspected intrathoracic tuberculosis were enrolled in 8 hospitals in Burkina Faso, Cambodia, Cameroon, and Vietnam. Gastric aspirates were taken for children aged <10 years and expectorated sputum samples were taken for children aged ≥10 years (standard samples); nasopharyngeal aspirate and stool were taken for all children, and a string test was performed if the child was aged ≥4 years (alternative samples). All samples were tested with Xpert. The diagnostic accuracy of Xpert for culture-confirmed tuberculosis was analyzed in intention-to-diagnose and per-protocol approaches., Results: Of 281 children enrolled, 272 (96.8%) had ≥1 specimen tested with Xpert (intention-to-diagnose population), and 179 (63.5%) had all samples tested with Xpert (per-protocol population). Tuberculosis was culture-confirmed in 29/272 (10.7%) children. Intention-to-diagnose sensitivities of Xpert performed on all, standard, and alternative samples were 79.3% (95% confidence interval [CI], 60.3-92.0), 72.4% (95% CI, 52.8-87.3), and 75.9% (95% CI, 56.5-89.7), respectively. Specificities were ≥97.5%. Xpert combined on nasopharyngeal aspirate and stool had intention-to-diagnose and per-protocol sensitivities of 75.9% (95% CI, 56.5-89.7) and 75.0% (95% CI, 47.6-92.7), respectively., Conclusions: The combination of nasopharyngeal aspirate and stool sample is a promising alternative to methods usually recommended by national programs. Xpert performed on respiratory and stools samples enables rapid confirmation of tuberculosis diagnosis in HIV-infected children., Clinical Trials Registration: The ANRS (Agence Nationale de Recherche sur le Sida) 12229 PAANTHER (Pediatric Asian African Network for Tuberculosis and HIV Research) 01 study is registered at ClinicalTrials.gov (NCT01331811)., (© The Author 2016. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail journals.permissions@oup.com.)
- Published
- 2016
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22. Genome-wide profiling of CpG methylation identifies novel targets of aberrant hypermethylation in myeloid leukemia.
- Author
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Gebhard C, Schwarzfischer L, Pham TH, Schilling E, Klug M, Andreesen R, and Rehli M
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- Acute Disease, Cell Line, Tumor, DNA, Neoplasm genetics, DNA, Neoplasm metabolism, Gene Expression Profiling, Genome, Human, Humans, Immunoglobulin Fragments chemistry, Immunoglobulin Fragments genetics, Immunoglobulin Fragments immunology, Immunoprecipitation methods, Leukemia, Myeloid metabolism, Oligonucleotide Array Sequence Analysis, Polymerase Chain Reaction, Promoter Regions, Genetic, RNA, Messenger biosynthesis, RNA, Messenger genetics, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins immunology, Reproducibility of Results, U937 Cells, CpG Islands genetics, DNA Methylation, Leukemia, Myeloid genetics
- Abstract
The methylation of CpG islands is associated with transcriptional repression and, in cancer, leads to the abnormal silencing of tumor suppressor genes. Because aberrant hypermethylation may be used as a marker for disease, a sensitive method for the global detection of DNA methylation events is of particular importance. We describe a novel and robust technique, called methyl-CpG immunoprecipitation, which allows the unbiased genome-wide profiling of CpG methylation in limited DNA samples. The approach is based on a recombinant, antibody-like protein that efficiently binds native CpG-methylated DNA. In combination with CpG island microarrays, the technique was used to identify >100 genes with aberrantly methylated CpG islands in three myeloid leukemia cell lines. Interestingly, within all hypermethylation targets, genes involved in transcriptional regulation were significantly overrepresented. More than half of the identified genes were absent in microarray expression studies in either leukemia or normal monocytes, indicating that hypermethylation in cancer may be largely independent of the transcriptional status of the affected gene. Most individually tested genes were also hypermethylated in primary blast cells from acute myeloid leukemia patients, suggesting that our approach can identify novel potential disease markers. The technique may prove useful for genome-wide comparative methylation analysis not only in malignancies.
- Published
- 2006
- Full Text
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