655 results on '"Oksanen, P."'
Search Results
2. Retrieving Yang–Mills–Higgs fields in Minkowski space from active local measurements
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Chen, Xi, Lassas, Matti, Oksanen, Lauri, and Paternain, Gabriel P.
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- 2024
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3. Gambling Motives and Offshore Gambling: A Finnish Population Study
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Hagfors, Heli, Oksanen, Atte, and Salonen, Anne H.
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- 2024
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4. Optimal Approximation of Unique Continuation
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Burman, Erik, Nechita, Mihai, and Oksanen, Lauri
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- 2024
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5. Stable Recovery of Coefficients in an Inverse Fault Friction Problem
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de Hoop, Maarten V., Lassas, Matti, Lu, Jinpeng, and Oksanen, Lauri
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- 2024
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6. Does job stress mediate the risk of work disability due to common mental disorders among social workers compared with other health and social care, education, and non-human service professionals? A prospective cohort study of public sector employees in Finland
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Otso Rantonen, Jenni Ervasti, Kristina Alexanderson, Tuula Oksanen, Ville Aalto, Ellenor Mittendorfer-Rutz, and Paula Salo
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stress ,sick leave ,job strain ,job stress ,education ,sickness absence ,prospective cohort study ,finland ,work disability ,mental disorder ,social worker ,public sector employee ,effort-reward imbalance ,social care ,non-human service professional ,human service profession ,counterfactual mediation analysis ,Public aspects of medicine ,RA1-1270 - Abstract
OBJECTIVE: This study aimed to investigate (i) the risk of work disability (>10-day sickness absence spell or disability pension) due to common mental disorders (CMD) among social workers compared with other health and social care, education, and non-human service professionals and (ii) whether the risk was mediated by job stress. METHODS: A cohort of 16 306 public sector professionals in Finland was followed using survey data from baseline (2004 or if not available, 2008) on job stress [job strain or effort-reward imbalance (ERI)] and register data on work disability due to CMD from baseline through 2011. A Cox proportional hazards model was used to analyze the risk of work disability due to CMD between three occupation-pairs in a counterfactual setting, controlling for age, sex, job contract, body mass index, alcohol risk use, smoking, and physical inactivity. RESULTS: Social workers’ job stress was at higher level only when compared to education professionals. Thus, the mediation hypothesis was analyzed comparing social workers to education professionals. Social workers had a higher risk of work disability due to CMD compared with education professionals [hazard ratio (HR) 2.08, 95% confidence interval (CI) 1.58–2.74]. This HR was partly mediated by job strain (24%) and ERI (12%). Social workers had a higher risk of work disability than non-human service professionals (HR 1.54, 95% CI 1.13–2.09), but not compared with other health and social care professionals. CONCLUSIONS: Job stress partly mediated the excess risk of work disability among social workers only in comparison with education professionals.
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- 2024
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7. Online communities come with real-world consequences for individuals and societies
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Atte Oksanen, Magdalena Celuch, Reetta Oksa, and Iina Savolainen
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Psychology ,BF1-990 ,Social Sciences - Abstract
Abstract Online communities have become a central part of the internet. Understanding what motivates users to join these communities, and how they affect them and others, spans various psychological domains, including organizational psychology, political and social psychology, and clinical and health psychology. We focus on online communities that are exemplary for three domains: work, hate, and addictions. We review the risks that emerge from these online communities but also recognize the opportunities that work and behavioral addiction communities present for groups and individuals. With the continued evolution of online spheres, online communities are likely to have an increasingly significant role in all spheres of life, ranging from personal to professional and from individual to societal. Psychological research provides critical insights into understanding the formation of online communities, and the implications for individuals and society. To counteract risks, it needs to identify opportunities for prevention and support.
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- 2024
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8. Online communities come with real-world consequences for individuals and societies
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Oksanen, Atte, Celuch, Magdalena, Oksa, Reetta, and Savolainen, Iina
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- 2024
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9. The circular economy of electric vehicle batteries: a Finnish case study
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Rönkkö, Pasi, Majava, Jukka, Hyvärinen, Tatu, Oksanen, Ilari, Tervonen, Pekka, and Lassi, Ulla
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- 2024
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10. Pathways to School Shooting Subculture: Re-thinking Theory Across Strain, Imitation, and Digital Mediation
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Mizrahi-Werner, Jonatan, Diederichsen, Martine Bech, Ilsøe, Benjamin Schou, Demant, Jakob, and Oksanen, Atte
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- 2024
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11. Treatment sequencing and impact of number of treatment lines on survival in follicular lymphoma: A national population‐based study
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Tove Wästerlid, Caroline E. Dietrich, Anna Oksanen, Linn Deleskog Spångberg, Björn E Wahlin, Gunilla Enblad, Per‐Ola Andersson, Eva Kimby, and Karin E. Smedby
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follicular lymphoma ,POD24 ,population‐based ,treatment sequencing ,Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Abstract Follicular lymphoma (FL) is a clinically heterogeneous disease. The need for treatment, treatment sequencing, number of treatment lines, and its association with survival have not been described in a population‐based setting. We identified all patients diagnosed with FL in the Swedish Lymphoma register from 2007 to 2014, followed until 2020, with detailed data on progression/relapse, transformation, and 2nd and further lines of therapy. During a median follow‐up of 6.8 years, 1226 patients (69%) received 1st systemic treatment, 358 patients (20%) were managed with watch‐and‐wait (WaW) only, and 188 (10%) patients were treated with radiotherapy and did not require additional therapy during the study period. Among patients starting systemic treatment, 496 (40%), 224 (18%), and 88 (7%) received 2nd‐, 3rd‐, or 4th‐line therapy, respectively. The 10‐year cause‐specific cumulative incidence of transformation was 13%. Among patients managed with 1st line R‐single, R‐CHOP, or BR, 54%, 33%, and 29% required 2nd line, respectively. The cumulative probability of starting subsequent treatment within 2 years was 26% after 1st line and 35% after 2nd line treatment. Two‐year OS following 1st, 2nd, 3rd, and 4th line systemic treatment was 84%, 70%, 52%, and 36%, respectively, and remained similar when excluding transformations. We conclude that a substantial proportion of FL patients can be managed with WaW for a long period of time, while patients who require multiple treatment lines constitute a group with a large clinical unmet need. These results constitute valuable real‐world reference data for FL.
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- 2024
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12. Craniofacial fractures sustained under the influence of alcohol: what are the differences between the sexes?
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Hanna Thorén, Klaus Virtanen, Erkka Oksanen, Miika Toivari, Auli Suominen, Tero Puolakkainen, and Johanna Snäll
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Facial fracture ,trauma ,alcohol ,intoxication ,Dentistry ,RK1-715 - Abstract
Objective: To identify mechanisms and types of injuries in patients having sustained craniofacial fractures under the influence of alcohol, and to compare the frequencies of them between males and females. Materials and methods: Patients included were adults who had been diagnosed with craniofacial fractures at Töölö Hospital Emergency Department, Helsinki University Hospital, Finland, and who had been under the influence of alcohol at the time of injury. The primary outcome variables were assault-related and fall-related injury mechanisms. The secondary outcome variables were other injury mechanisms, time of accident, type of craniofacial fracture and severity of facial fracture. The primary predictor variable was sex. The control variable was age at the time of injury. The statistical modelling was executed using logistic regression. Results: Of the total of 2,859 patients with craniofacial fractures, 1,014 patients (35.5%) fulfilled the inclusion criteria. Males predominated (84.6%). Assault (38.0%) was the most frequent aetiology. Compared to the odds of females, males had 2.8 times greater odds for assault, 2.4 times greater odds for isolated cranial fracture and 1.7 times greater odds for a facial injury severity score of ≥ 3. Females had 2.0 times greater odds for any fall compared to the odds of males. Conclusions: Particularly male patients are frequently under the influence of alcohol at the time of injury, predisposing them to assault and severe facial fractures more often than females. Codes of practice on how to identify unhealthy alcohol use and how to intervene are recommended.
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- 2024
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13. From wildlife to humans: The global distribution of Trichinella species and genotypes in wildlife and wildlife-associated human trichinellosis
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Cody J. Malone, Antti Oksanen, Samson Mukaratirwa, Rajnish Sharma, and Emily Jenkins
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Epidemiology ,Foodborne disease ,Trichinella ,Trichinellosis ,Zoonotic disease ,Zoology ,QL1-991 - Abstract
Zoonotic nematodes of the genus Trichinella are foodborne parasites that have a global distribution in wild carnivores and omnivores, with spillover and spillback into domestic livestock and people, with concomitant trade and health consequences. Historically, most human cases were linked to domestic pigs infected with Trichinella spiralis, but under current high biosecurity swine production in many countries, wildlife have become a more important source of human trichinellosis. The aim of this review is to update the global distribution of Trichinella species and genotypes reported in wildlife, as well as reported human outbreaks from the consumption of wildlife. Using several online databases and by “snowballing” references, hundreds of reports of Trichinella spp. in wildlife published between January 1991 and December 2023 provide an important update to the host and geographic range for each of the recognized 13 species/genotypes, grouped by continent. Surveillance effort was highest in Europe and North America, while Africa, Asia, Oceania, Central and South America have had limited surveillance, in some instances with human cases serving as sentinels of transmission in a region. Dozens of human outbreaks are described, with wild boars (Sus scrofa) being the most frequently implicated wildlife species in human outbreaks globally. Bears are an important source of infection in North America, for wildlife tourism, and importation of bear meat has also been implicated in multicountry outbreaks. The largest study limitation was the dearth of molecular identification of larvae in both wildlife surveillance studies and human outbreaks, particulary in under-studied regions. We highlight the need for enhanced molecular epidemiological approaches to outbreaks of this important foodborne parasite, and emphasize the need for a One Health approach to manage Trichinella spp. which transmit among terrestrial and marine wildlife (including migratory birds), pigs, horses, and people, often across large geographic scales and borders.
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- 2024
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14. Tracking Chlamydia – Host interactions and antichlamydial activity in Caenorhabditis elegans
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Inés Reigada, Karmen Kapp, Theresa Kaudela, María García Soria, Timo Oksanen, and Leena Hanski
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Pathogen-host interaction ,Phytomedicine ,Non-genetic antimicrobial resistance ,Schisandra chinensis ,Dibenzocyclooctadiene lignan ,Bacterial persistence ,Therapeutics. Pharmacology ,RM1-950 - Abstract
The fading efficacy of antibiotics is a growing global health concern due to its life-threatening consequences and increased healthcare costs. Non-genetic mechanisms of antimicrobial resistance, such as those employed by Chlamydia pneumoniae and Chlamydia trachomatis, complicate treatment as these bacteria can enter a non-replicative, persistent state under stress, evading antibiotics and linking to inflammatory conditions. Understanding chlamydial persistence at the molecular level is challenging, and new models for studying Chlamydia-host interactions in vivo are urgently needed. Caenorhabditis elegans offers an alternative given its immune system and numerous orthologues of human genes. This study established C. elegans as an in vivo model for chlamydial infection. Both Chlamydia species reduced the worm's lifespan, their DNA being detectable at three- and six-days post-infection. Azithromycin at its MIC (25 nM) failed to prevent the infection-induced lifespan reduction, indicating a persister phenotype. In contrast, the methanolic extract of Schisandra chinensis berries showed anti-chlamydial activity both in vitro (in THP-1 macrophages) and in vivo, significantly extending the lifespan of infected C. elegans and reducing the bacterial load. Moreover, S. chinensis increased the transcriptional activity of SKN-1 in the worms, but was unable to impact the bacterial load or lifespan in a sek-1 defective C. elegans strain. In summary, this study validated C. elegans as a chlamydial infection model and showcased S. chinensis berries' in vivo anti-chlamydial potential, possibly through SEK/SKN-1 signaling modulation.
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- 2024
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15. Many human pharmaceuticals are weak inhibitors of the cytochrome P450 system in rainbow trout (Oncorhynchus mykiss) liver S9 fractions
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Tea Pihlaja, Timo Oksanen, Netta Vinkvist, and Tiina Sikanen
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cytochrome P450 ,enzyme inhibition ,pharmaceuticals ,rainbow trout ,ecotoxicology ,bioaccumulation ,Toxicology. Poisons ,RA1190-1270 - Abstract
IntroductionPharmaceutical residues are widely detected in aquatic environment and can be taken up by nontarget species such as fish. The cytochromes P450 (CYP) represent an important detoxification mechanism in fish, like in humans. In the present study, we assessed the correlation of the substrate selectivities of rainbow trout CYP1A and CYP3A homologues with those of human, through determination of the half-maximal inhibitory concentrations (IC50) of a total sixteen human pharmaceuticals toward CYP1A-like ethoxyresorufin O-deethylase (EROD) and CYP3A-like 7-benzyloxy-4-trifluoromethylcoumarin O-debenzylase (BFCOD) in rainbow trout (Oncorhynchus mykiss) liver S9 fractions (RT-S9).MethodsThe inhibitory impacts (IC50) of atomoxetine, atorvastatin, azelastine, bimatoprost, clomethiazole, clozapine, desloratadine, disulfiram, esomeprazole, felbinac, flecainide, orphenadrine, prazosin, quetiapine, sulpiride, and zolmitriptan toward the EROD and BFCOD activities in RT-S9 were determined using the IC50 shift assay, capable of identifying time-dependent inhibitors (TDI). Additionally, the nonspecific binding of the test pharmaceuticals to RT-S9 was assessed using equilibrium dialysis.ResultsMost test pharmaceuticals were moderate to weak inhibitors of both EROD and BFCOD activity in RT-S9, even if most are noninhibitors of human CYP1A or CYP3A. Only bimatoprost, clomethiazole, felbinac, sulpiride, and zolmitriptan did not inhibit either activity in RT-S9. EROD inhibition was generally stronger than that of BFCOD and some substances (atomoxetine, flecainide, and prazosin) inhibited selectively only EROD activity. The strongest EROD inhibition was detected with azelastine and esomeprazole (unbound IC50 of 3.8 ± 0.5 µM and 3.0 ± 0.8 µM, respectively). None of the test substances were TDIs of BFCOD, but esomeprazole was a TDI of EROD. Apart from clomethiazole and disulfiram, the nonspecific binding of the test pharmaceuticals to the RT-S9 was extensive (unbound fractions
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- 2024
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16. Four principles to establish a universal virus taxonomy
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Simmonds, Peter, Adriaenssens, Evelien M, Zerbini, F Murilo, Abrescia, Nicola GA, Aiewsakun, Pakorn, Alfenas-Zerbini, Poliane, Bao, Yiming, Barylski, Jakub, Drosten, Christian, Duffy, Siobain, Duprex, W Paul, Dutilh, Bas E, Elena, Santiago F, García, Maria Laura, Junglen, Sandra, Katzourakis, Aris, Koonin, Eugene V, Krupovic, Mart, Kuhn, Jens H, Lambert, Amy J, Lefkowitz, Elliot J, Łobocka, Małgorzata, Lood, Cédric, Mahony, Jennifer, Meier-Kolthoff, Jan P, Mushegian, Arcady R, Oksanen, Hanna M, Poranen, Minna M, Reyes-Muñoz, Alejandro, Robertson, David L, Roux, Simon, Rubino, Luisa, Sabanadzovic, Sead, Siddell, Stuart, Skern, Tim, Smith, Donald B, Sullivan, Matthew B, Suzuki, Nobuhiro, Turner, Dann, Van Doorslaer, Koenraad, Vandamme, Anne-Mieke, Varsani, Arvind, and Vasilakis, Nikos
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Infectious Diseases ,Infection ,Humans ,Bacteriophages ,Metagenomics ,Phylogeny ,Viruses ,Biological Sciences ,Agricultural and Veterinary Sciences ,Medical and Health Sciences ,Developmental Biology - Abstract
A universal taxonomy of viruses is essential for a comprehensive view of the virus world and for communicating the complicated evolutionary relationships among viruses. However, there are major differences in the conceptualisation and approaches to virus classification and nomenclature among virologists, clinicians, agronomists, and other interested parties. Here, we provide recommendations to guide the construction of a coherent and comprehensive virus taxonomy, based on expert scientific consensus. Firstly, assignments of viruses should be congruent with the best attainable reconstruction of their evolutionary histories, i.e., taxa should be monophyletic. This fundamental principle for classification of viruses is currently included in the International Committee on Taxonomy of Viruses (ICTV) code only for the rank of species. Secondly, phenotypic and ecological properties of viruses may inform, but not override, evolutionary relatedness in the placement of ranks. Thirdly, alternative classifications that consider phenotypic attributes, such as being vector-borne (e.g., "arboviruses"), infecting a certain type of host (e.g., "mycoviruses," "bacteriophages") or displaying specific pathogenicity (e.g., "human immunodeficiency viruses"), may serve important clinical and regulatory purposes but often create polyphyletic categories that do not reflect evolutionary relationships. Nevertheless, such classifications ought to be maintained if they serve the needs of specific communities or play a practical clinical or regulatory role. However, they should not be considered or called taxonomies. Finally, while an evolution-based framework enables viruses discovered by metagenomics to be incorporated into the ICTV taxonomy, there are essential requirements for quality control of the sequence data used for these assignments. Combined, these four principles will enable future development and expansion of virus taxonomy as the true evolutionary diversity of viruses becomes apparent.
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- 2023
17. Perceptions of Assistive Robots at Work: An Experimental Approach to Social Influence
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Latikka, Rita, Savela, Nina, and Oksanen, Atte
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- 2023
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18. High genetic diversity of Echinococcus canadensis G10 in northeastern Asia: is it the region of origin?
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Marion Wassermann, Francis Addy, Ludmila Kokolova, Innokentiy Okhlopkov, Sarah Leibrock, Jenny Oberle, Antti Oksanen, and Thomas Romig
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eastern Russia ,Echinococcus canadensis G10 ,Echinococcus multilocularis ,high genetic diversity of G10 ,Biochemistry ,QD415-436 ,Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
Echinococcus canadensis consists of 4 genotypes: G6, G7, G8 and G10. While the first 2 predominantly infect domestic animals, the latter are sylvatic in nature involving mainly wolves and cervids as hosts and can be found in the northern temperate to Arctic latitudes. This circumstance makes the acquisition of sample material difficult, and little information is known about their genetic structure. The majority of specimens analysed to date have been from the European region, comparatively few from northeast Asia and Alaska. In the current study, Echinococcus spp. from wolves and intermediate hosts from the Republic of Sakha in eastern Russia were examined. Echinococcus canadensis G10 was identified in 15 wolves and 4 cervid intermediate hosts. Complete mitochondrial cytochrome c oxidase subunit 1 (cox1) sequences were obtained from 42 worm and cyst specimens from Sakha and, for comparison, from an additional 13 G10 cysts from Finland. For comparative analyses of the genetic diversity of G10 of European and Asian origin, all available cox1 sequences from GenBank were included, increasing the number of sequences to 99. The diversity found in northeast Asia was by far higher than in Europe, suggesting that the geographic origin of E. canadensis (at least of G10) might be northeast Asia.
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- 2024
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19. Dethroning Mineral King: Daniel P. Selmi: Dawn at Mineral King Valley. The Sierra Club, the Disney Company, and the rise of environmental law. Chicago: The University of Chicago Press, 2022, xiv + 347 pp, $30.00 HB
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Oksanen, Markku
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- 2023
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20. High-volume evacuation mitigates viral aerosol spread in dental procedures
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Rasmus Malmgren, Hanna Välimaa, Lotta Oksanen, Enni Sanmark, Petra Nikuri, Paavo Heikkilä, Jani Hakala, Aleksi Ahola, Simeoni Yli-Urpo, Ville Palomäki, Eija Asmi, Svetlana Sofieva, Antti Rostedt, Sirpa Laitinen, Martin Romantschuk, Tarja Sironen, Nina Atanasova, Susanna Paju, and Laura Lahdentausta-Suomalainen
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Medicine ,Science - Abstract
Abstract Dental healthcare personnel (DHCP) are subjected to microbe-containing aerosols and splatters in their everyday work. Safer work conditions must be developed to ensure the functioning of the healthcare system. By simulating dental procedures, we aimed to compare the virus-containing aerosol generation of four common dental instruments, and high-volume evacuation (HVE) in their mitigation. Moreover, we combined the detection of infectious viruses with RT-qPCR to form a fuller view of virus-containing aerosol spread in dental procedures. The air–water syringe produced the highest number of aerosols. HVE greatly reduced aerosol concentrations during procedures. The air–water syringe spread infectious virus-containing aerosols throughout the room, while other instruments only did so to close proximity. Additionally, infectious viruses were detected on the face shields of DHCP. Virus genomes were detected throughout the room with all instruments, indicating that more resilient viruses might remain infectious and pose a health hazard. HVE reduced the spread of both infectious viruses and viral genomes, however, it did not fully prevent them. We recommend meticulous use of HVE, a well-fitting mask and face shields in dental procedures. We advise particular caution when operating with the air–water syringe. Due to limited repetitions, this study should be considered a proof-of-concept report.
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- 2023
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21. A stability estimate for data assimilation subject to the heat equation with initial datum
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Burman, Erik, Delay, Guillaume, Ern, Alexandre, and Oksanen, Lauri
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Mathematics ,QA1-939 - Abstract
This paper studies the unique continuation problem for the heat equation. We prove a so-called conditional stability estimate for the solution. We are interested in local estimates that are Hölder stable with the weakest possible norms of data on the right-hand side. Such an estimate is useful for the convergence analysis of computational methods dealing with data assimilation. We focus on the case of a known solution at initial time and in some subdomain but that is unknown on the boundary. To the best of our knowledge, this situation has not yet been studied in the literature.
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- 2023
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22. Inline Raman Spectroscopy Provides Versatile Molecular Monitoring for Platelet Extracellular Vesicle Purification with Anion-Exchange Chromatography
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Heikki Saari, Heli Marttila, Minna M. Poranen, Hanna M. Oksanen, Jacopo Zini, and Saara Laitinen
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extracellular vesicles ,Raman spectroscopy ,inline analytics ,ion-exchange chromatography ,platelets ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Extracellular vesicles (EVs) are relatively recently discovered biological nanoparticles that mediate intercellular communication. The development of new methods for the isolation and characterization of EVs is crucial to support further studies on these small and structurally heterogenous vesicles. New scalable production methods are also needed to meet the needs of future therapeutic applications. A reliable inline detection method for the EV manufacturing process is needed to ensure reproducibility and to identify any possible variations in real time. Here, we demonstrate the use of an inline Raman detector in conjunction with anion exchange chromatography for the isolation of EVs from human platelets. Anion-exchange chromatography can be easily coupled with multiple inline detectors and provides an alternative to size-based methods for separating EVs from similar-sized impurities, such as lipoprotein particles. Raman spectroscopy enabled us to identify functional groups in EV samples and trace EVs and impurities in different stages of the process. Our results show a notable separation of impurities from the EVs during anion-exchange chromatography and demonstrate the power of inline Raman spectroscopy. Compared to conventional EV analysis methods, the inline Raman approach does not require hands-on work and can provide detailed, real-time information about the sample and the purification process.
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- 2024
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23. Virus-Host Interactions and Genetic Diversity of Antarctic Sea Ice Bacteriophages
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Demina, Tatiana A, Luhtanen, Anne-Mari, Roux, Simon, and Oksanen, Hanna M
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Microbiology ,Biological Sciences ,Ecology ,Genetics ,Infectious Diseases ,2.1 Biological and endogenous factors ,Aetiology ,2.2 Factors relating to the physical environment ,Infection ,Life Below Water ,Antarctic Regions ,Bacteriophages ,Genetic Variation ,Host Microbial Interactions ,Ice Cover ,Seawater ,Antarctic virus ,infection cycle ,metagenomics ,sea ice ,virus genome ,Biochemistry and cell biology ,Medical microbiology - Abstract
Although we know the generally appreciated significant roles of microbes in sea ice and polar waters, detailed studies of virus-host systems from such environments have been so far limited by only a few available isolates. Here, we investigated infectivity under various conditions, infection cycles, and genetic diversity of the following Antarctic sea ice bacteriophages: Paraglaciecola Antarctic GD virus 1 (PANV1), Paraglaciecola Antarctic JLT virus 2 (PANV2), Octadecabacter Antarctic BD virus 1 (OANV1), and Octadecabacter Antarctic DB virus 2 (OANV2). The phages infect common sea ice bacteria belonging to the genera Paraglaciecola or Octadecabacter. Although the phages are marine and cold-active, replicating at 0°C to 5°C, they all survived temporal incubations at ≥30°C and remained infectious without any salts or supplemented only with magnesium, suggesting a robust virion assembly maintaining integrity under a wide range of conditions. Host recognition in the cold proved to be effective, and the release of progeny viruses occurred as a result of cell lysis. The analysis of viral genome sequences showed that nearly one-half of the gene products of each virus are unique, highlighting that sea ice harbors unexplored virus diversity. Based on predicted genes typical for tailed double-stranded DNA phages, we suggest placing the four studied viruses in the class Caudoviricetes. Searching against viral sequences from metagenomic assemblies, we revealed that related viruses are not restricted to Antarctica but are also found in distant marine environments. IMPORTANCE Very little is known about sea ice microbes despite the significant role played by sea ice in the global oceans as well as microbial input into biogeochemical cycling. Studies on the sea ice viruses have been typically limited to -omics-based approaches and microscopic examinations of sea ice samples. To date, only four cultivable viruses have been isolated from Antarctic sea ice. Our study of these unique isolates advances the understanding of the genetic diversity of viruses in sea ice environments, their interactions with host microbes, and possible links to other biomes. Such information contributes to more accurate future sea ice biogeochemical models.
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- 2022
24. High-volume evacuation mitigates viral aerosol spread in dental procedures
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Malmgren, Rasmus, Välimaa, Hanna, Oksanen, Lotta, Sanmark, Enni, Nikuri, Petra, Heikkilä, Paavo, Hakala, Jani, Ahola, Aleksi, Yli-Urpo, Simeoni, Palomäki, Ville, Asmi, Eija, Sofieva, Svetlana, Rostedt, Antti, Laitinen, Sirpa, Romantschuk, Martin, Sironen, Tarja, Atanasova, Nina, Paju, Susanna, and Lahdentausta-Suomalainen, Laura
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- 2023
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25. Associations between accumulating job stressors, workplace social capital, and psychological distress on work-unit level: a cross-sectional study
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Nikunlaakso, Risto, Reuna, Kaisa, Oksanen, Tuula, and Laitinen, Jaana
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- 2023
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26. Genotyped functional screening of soluble Fab clones enables in-depth analysis of mutation effects
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Oksanen, Sami, Saarinen, Roope, Korkiakoski, Anttoni, Lamminmäki, Urpo, and Huovinen, Tuomas
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- 2023
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27. Screening autism-associated environmental factors in differentiating human neural progenitors with fractional factorial design-based transcriptomics
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Arora, Abishek, Becker, Martin, Marques, Cátia, Oksanen, Marika, Li, Danyang, Mastropasqua, Francesca, Watts, Michelle Evelyn, Arora, Manish, Falk, Anna, Daub, Carsten Oliver, Lanekoff, Ingela, and Tammimies, Kristiina
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- 2023
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28. A survey for antibodies against Fasciola hepatica in cattle and sheep in Finland indicates a low level of exposure
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Gröning, Heini, Oksanen, Antti, Skrzypczak, Teresa, and Autio, Tiina
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- 2023
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29. Circular RNAs arising from synaptic host genes during human neuronal differentiation are modulated by SFPQ RNA-binding protein
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Watts, Michelle E., Oksanen, Marika, Lejerkrans, Sanna, Mastropasqua, Francesca, Gorospe, Myriam, and Tammimies, Kristiina
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- 2023
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30. Virtual visits at the Helsinki Head and Neck Center during the COVID-19 pandemic: patient safety incidents and the experiences of patients and staff
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Tolvi, Morag, Oksanen, Lotta-Maria, Lehtonen, Lasse, Geneid, Ahmed, Männikkö, Pia, Ruokonen, Hellevi, Majander, Anna, Arminen, Susan, and Aaltonen, Leena-Maija
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- 2023
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31. Correction to: Changes to virus taxonomy and the ICTV Statutes ratifed by the International Committee on Taxonomy of Viruses (2023)
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Zerbini, Francisco Murilo, Siddell, Stuart G., Lefkowitz, Elliot J., Mushegian, Arcady R., Adriaenssens, Evelien M., Alfenas‑Zerbini, Poliane, Dempsey, Donald M., Dutilh, Bas E., García, María Laura, Hendrickson, R. Curtis, Junglen, Sandra, Krupovic, Mart, Kuhn, Jens H., Lambert, Amy J., Łobocka, Małgorzata, Oksanen, Hanna M., Robertson, David L., Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Smith, Donald B., Suzuki, Nobuhiro, Van Doorslaer, Koenraad, Vandamme, Anne‑Mieke, and Varsani, Arvind
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- 2023
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32. Associations of inflammatory polyarthritis with clinical and radiological findings of temporomandibular disorders
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Sari Oksanen, Kirsi Sipilä, Markku Heliövaara, Anna Liisa Suominen, and Sisko Huumonen
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Temporomandibular disorders ,polyarthritis ,arthritis ,rheumatoid ,biomarkers ,Dentistry ,RK1-715 - Abstract
Objective: To evaluate the association of different forms of inflammatory polyarthritis with clinical signs of temporomandibular disorders (TMD) and radiological findings in temporomandibular joint (TMJ), based on a nationwide health survey in Finland. The aim was also to assess the presence of clinical and radiological TMD findings in subjects with increased risk for developing rheumatoid arthritis (RA). Material and methods: Anationally representative sample included 6331 Finnish adults who participated in the Health 2000 Survey (BRIF8901). Subjects were examined for signs of TMD, findings in panoramic radiograph of TMJ, musculoskeletal health and serology (rheumatoid factor, RF, and anti-cyclic citrullinated peptide, aCCP). Results: Sixty-four percent of seronegative RAand 60% of seropositive RAsubjects had at least one sign of TMD. While adjusting for confounding factors (gender, age, dentures and smoking history), RAwas significantly associated with crepitation and abnormal radiological findings in TMJ. Seronegative RAwas also associated with restricted mouth opening. Systemic autoimmunity associated with RA(“at risk of RA”) was not associated with clinical or radiological TMD findings. Conclusions: Clinical and radiological findings of TMD are more prevalent among subjects with inflammatory polyarthritis than among the population in general in the Finnish adult population.
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- 2024
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33. Reciprocal of the CPT theorem
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Luis Álvarez-Gaumé, Moshe M. Chaichian, Markku A. Oksanen, and Anca Tureanu
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Physics ,QC1-999 - Abstract
The CPT theorem originally proven by Lüders and Pauli ensures the equality of masses, lifetimes, magnetic moments and cross sections of any particle and its antiparticle. We show that in a Lorentz invariant quantum field theory described by its Lagrangian, CPT-violating interaction alone does not split the masses of an elementary particle and its antiparticle but breaks only the equality of lifetimes, magnetic moments and cross sections. However, CPT violation in the mass term of a field in the Lagrangian, which can be attributed to be due to the size of the particle described by a form factor, breaks only the equality of masses. Also it is shown that the two separate effects of CPT violation in the interaction terms or in the mass term do not mix due to higher quantum corrections and remain distinguishable. Thus, we urge the experimentalists to search for such observable effects concerning differences in the masses, magnetic moments, lifetimes and cross sections between the elementary or bound state particles and their antiparticles. In the case of CPT violation only in the mass term, besides the difference in the masses of elementary bound state particles and their antiparticles, there will be also an extremely tiny difference in the lifetimes of bound states due to the difference in their phase spaces. From the details of calculations, it appears that the separate effects of the CPT violation described above are quite general, neither depending on how the nonlocality is achieved, nor depending on what this violation is due to: due to T violation, as considered in the present work, which can be attributed to a cosmological direction of time; to CP or to both T and CP violations. The latter two cases satisfy the Sakharov's conditions for explaining the baryon asymmetry in the Universe.
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- 2024
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34. Do We Trust Artificially Intelligent Assistants at Work? An Experimental Study
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Anica Cvetkovic, Nina Savela, Rita Latikka, and Atte Oksanen
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Psychology ,BF1-990 ,Information technology ,T58.5-58.64 - Abstract
The fourth industrial revolution is bringing artificial intelligence (AI) into various workplaces, and many businesses worldwide are already capitalizing on AI assistants. Trust is essential for the successful integration of AI into organizations. We hypothesized that people have higher trust in human assistants than AI assistants and that people trust AI assistants more if they have more control over their activities. To test our hypotheses, we utilized a survey experiment with 828 participants from Finland. Results showed that participants would rather entrust their schedule to a person than to an AI assistant. Having control increased trust in both human and AI assistants. The results of this study imply that people in Finland still have higher trust in traditional workplaces where people, rather than smart machines, perform assisting work. The findings are of relevance for designing trustworthy AI assistants, and they should be considered when integrating AI technology into organizations.
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- 2024
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35. Hate and Harassment in Academia: The Rising Concern of the Online Environment
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Oksanen, Atte, Celuch, Magdalena, Latikka, Rita, Oksa, Reetta, and Savela, Nina
- Abstract
Hostile online communication is a global concern. Academic research and teaching staff are among those professionals who routinely give public comments and are thus vulnerable to online attacks. This social psychological and criminological study investigated online harassment victimization among university researchers and teachers. Survey participants (N = 2,492) were university research and teaching staff members from five major universities in Finland. Victimization was assessed with a 20-item inventory. The study included a wide range of both background and general measures on well-being at work. Participants also took part in an online experiment involving a death threat targeting a colleague. Results showed that 30% of the participants reported being victims of online harassment during the prior 6 months. Victims were more often senior staff members, minority group members, and from the social sciences and humanities. Those active in traditional or social media were much more likely to be targeted. Victims reported higher psychological distress, lower generalized trust, and lower perceived social support at work than non-victims. Individuals who were targeted by a colleague from their work community reported higher post-traumatic stress disorder scores and a higher impact of perceived online harassment on their work compared to other victims. In the experimental part of the study, participants reported more anxiety when a close colleague received a death threat. Participants also recommended more countermeasures to a close colleague than to an unknown person from the same research field. Results indicate that online harassment compromises well-being at work in academia. There is an urgent need to find ways of preventing online harassment, both in workplaces and in society at large.
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- 2022
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36. Associations between accumulating job stressors, workplace social capital, and psychological distress on work-unit level: a cross-sectional study
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Risto Nikunlaakso, Kaisa Reuna, Tuula Oksanen, and Jaana Laitinen
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Work stress ,Psychological distress ,Social capital ,Interaction ,Work-units ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Psychosocial job stressor studies usually examine one exposure at a time and focus on individual workers. In this study we examined the accumulation of work stressors in work units and its association with psychological distress (PD) on work-unit level. We also investigated whether high workplace social capital modifies the effect. Methods We examined survey responses from 813 Finnish health and social services (HSS) work units, comprising 9 502 employees, in a cross-sectional study design. The survey was conducted in 2021. We calculated odds ratios for the association between accumulating job stressors and PD. We also analyzed the interaction between work stressors and the effect modification of high workplace social capital. Results We found that HSS work units with high percentage of employees having high job demands and low rewards (OR 7.2, 95% CI 3.7, 13.8) have an increased risk of higher PD in the work unit. We also found indication of high social capital possibly modifying the effect of job stressors on PD. The results suggest that accumulated job stressors are associated with PD on work unit level, with excess risk for PD compared to the stressors acting separately. Conclusions The results indicate that the effect of accumulating job stressors should be further studied on work-unit level. Participatory organizational-level and work-unit level interventions to tackle job stressors and to improve workplace social capital are warranted.
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- 2023
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37. Genotyped functional screening of soluble Fab clones enables in-depth analysis of mutation effects
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Sami Oksanen, Roope Saarinen, Anttoni Korkiakoski, Urpo Lamminmäki, and Tuomas Huovinen
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Medicine ,Science - Abstract
Abstract Monoclonal antibodies (mAbs) and their fragments are widely used in therapeutics, diagnostics and basic research. Although display methods such as phage display offer high-throughput, affinities of individual antibodies need to be accurately measured in soluble format. We have developed a screening platform capable of providing genotyped functional data from a total of 9216 soluble, individual antigen binding fragment (Fab) clones by employing next-generation sequencing (NGS) with hierarchical indexing. Full-length, paired variable domain sequences (VL–VH) are linked to functional screening data, enabling in-depth analysis of mutation effects. The platform was applied to four phage display-selected scFv/Fab screening projects and one site-saturation VH affinity maturation project. Genotyped functional screening simultaneously enabled the identification of affinity improving mutations in the VH domain of Fab 49A3 recognizing Dengue virus non-structural protein 1 (NS1) serotype 2 and informed on VH residue positions which cannot be changed from wild-type without decreasing the affinity. Genotype-based identification revealed to us the extent of intraclonal signal variance inherent to single point screening data, a phenomenon often overlooked in the field. Moreover, genotyped screening eliminated the redundant selection of identical genotypes for further study and provided a new analysis tool to evaluate the success of phage display selections and remaining clonal diversity in the screened repertoires.
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- 2023
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38. Initial fluid resuscitation guided by the Parkland formula leads to high fluid volumes in the first 72 h, increasing mortality and the risk for kidney injury
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Laura Lindahl, Tuomas Oksanen, Andrew Lindford, and Tero Varpula
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Fluid resuscitation ,Parkland formula ,Over resuscitation ,Acute kidney injury ,Burn resuscitation protocol ,Dermatology ,RL1-803 ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Background: Our Burn center has used the Parkland formula (4 ml/kg/TBSA%) adjusted by physiological parameters to guide fluid resuscitation in burn patients. Our main objective was to examine fluid resuscitation in patients with major burn injury and its effect on mortality, need for renal replacement therapy (RRT) and the length of stay (LOS) in the Intensive Care Unit (ICU). Further aims were to determine which factors were associated with fluid resuscitation volumes during the first 24 h, and whether these fluid volumes had an association with the volumes infused during the next 48 h. Methods: This retrospective observational study accrued patients (N = 46) admitted to the Helsinki Burn Center between 2016 and 2018 with burn injuries ≥ 20% TBSA. The national intensive care registry and the electronic patient record system provided data on fluid infusions, urine output, laboratory measurements, presence of inhalation injury, surgical procedures within 72 h from injury, patient demographics, need for renal replacement therapy and mortality. Patients were divided into groups based on infused fluid volumes and univariate regressions were performed to identify factors associated with fluid volumes. Results: 48% of the patients received fluids more than 6 ml/kg/TBSA% during the first 24 h. 35% of the patients received fluid volumes exceeding the Ivy index (250 ml/kg/d) and was associated with higher TBSA%, SOFA and SAPS scores as well as increased mortality and need for RRT. Higher lactate and lower base excess were associated with higher fluid volumes. Urine output had no association with the resuscitation volumes. Larger resuscitation volumes during the first 24 h were associated with larger fluid volumes given also during the next 48 h. Higher cumulative fluid volume in 0–72 h resulted in increased need of RRT and higher ICU mortality. Conclusion: Using the Parkland formula and adjusting the infusion based on physiological parameters leads to over resuscitation in many of the patients. It seems that the more fluids are given during the initial resuscitation phase, the more fluids are also administered during the subsequent phase. Higher cumulative fluid volumes are associated with RRT requirements and higher mortality. We postulate that starting fluid resuscitation with a lower infusion rate could be beneficial, as it may lead to smaller cumulative fluid volumes during the first 72 h, leading to reduced mortality and kidney injury.
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- 2023
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39. Changes in work-related stressors before and during the COVID-19 pandemic: differences by gender and parental status
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Backhaus, Insa, Hoven, Hanno, Bambra, Clare, Oksanen, Tuula, Rigó, Mariann, di Tecco, Cristina, Iavicoli, Sergio, and Dragano, Nico
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- 2023
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40. Working conditions during the COVID-19 pandemic in primary and tertiary healthcare: a comparative cross-sectional study
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Ida Aulanko, Enni Sanmark, Lotta Oksanen, Sampo Oksanen, Laura Lahdentausta, Anne Kivimäki, Susanna Paju, Milla Pietiäinen, Pirkko Pussinen, and Ahmed Geneid
- Subjects
covid-19 ,sars-cov-2 ,pandemics ,health personnel ,surveys and questionnaires ,cross-sectional studies ,Medicine - Abstract
Objectives The COVID-19 pandemic has globally affected healthcare workers’ (HCWs) health and wellbeing. Most studies on COVID-19 have focused on tertiary healthcare. The aim of this study was to increase the knowledge on the effects of the pandemic on working conditions in tertiary and primary healthcare. Material and Methods The comparative cross-sectional study consisted of an online questionnaire sent to HCWs of the City of Helsinki (primary healthcare) and Helsinki University Hospital (tertiary healthcare). Altogether 1580 HCWs with direct patient contact participated in the study: 895 from tertiary and 685 from primary healthcare. Statistical analysis used SPSS 25 from IBM. The tests used were the χ 2 test, Fisher’s exact test, and binary logistic regression analysis. Results Primary HCWs were less likely to treat COVID-19 patients (OR = 0.45, 95% CI: 0.37–0.56). However, both groups reported a similar number of COVID-19 infections, primary HCWs 4.9% and tertiary HCWs 5.0%, and workrelated quarantine was significantly more prevalent (OR = 1.96, 95% CI: 1.38–2.79) among primary HCWs. In addition, work-related wellbeing was poorer among primary HCWs than tertiary HCWs in terms of feeling more stressed at work (OR = 3.20, 95% CI: 2.55–4.02), not recovering from work (OR = 0.49, 95% CI: 0.39–0.62), reported mental wellbeing below normal levels (OR: 1.59, 95% CI: 1.26–2.00), and increased working hours (OR = 1.63, 95% CI: 1.25–2.12). Conclusions The study demonstrates how the pandemic has affected the wellbeing and working conditions of not only tertiary but also less studied primary HCWs. The authors’ findings suggest that the challenges identified during the COVID-19 pandemic in the health and wellbeing of healthcare workers are even greater in primary care than in tertiary care. Int J Occup Med Environ Health. 2023;36(1):139–50
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- 2023
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41. Black box of phage-bacterium interactions: exploring alternative phage infection strategies.
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Mäntynen, Sari, Laanto, Elina, Oksanen, Hanna M, Poranen, Minna M, and Díaz-Muñoz, Samuel L
- Subjects
bacteriophage ,carrier state ,chronic infection ,phage infection ,pseudolysogeny ,Rare Diseases ,Infectious Diseases ,2.1 Biological and endogenous factors ,Infection ,Biochemistry and Cell Biology ,Microbiology ,Immunology - Abstract
The canonical lytic-lysogenic binary has been challenged in recent years, as more evidence has emerged on alternative bacteriophage infection strategies. These infection modes are little studied, and yet they appear to be more abundant and ubiquitous in nature than previously recognized, and can play a significant role in the ecology and evolution of their bacterial hosts. In this review, we discuss the extent, causes and consequences of alternative phage lifestyles, and clarify conceptual and terminological confusion to facilitate research progress. We propose distinct definitions for the terms 'pseudolysogeny' and 'productive or non-productive chronic infection', and distinguish them from the carrier state life cycle, which describes a population-level phenomenon. Our review also finds that phages may change their infection modes in response to environmental conditions or the physiological state of the host cell. We outline known molecular mechanisms underlying the alternative phage-host interactions, including specific genetic pathways and their considerable biotechnological potential. Moreover, we discuss potential implications of the alternative phage lifestyles for microbial biology and ecosystem functioning, as well as applied topics such as phage therapy.
- Published
- 2021
42. Buzzword ISOBUS
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Brodie, Samuel, Oksanen, Timo, and Auernhammer, Hermann
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- 2023
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43. A survey for antibodies against Fasciola hepatica in cattle and sheep in Finland indicates a low level of exposure
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Heini Gröning, Antti Oksanen, Teresa Skrzypczak, and Tiina Autio
- Subjects
Bovine ,Bulk tank milk ,ELISA ,Liver fluke ,Ovine ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background Fasciolosis is a parasitic infection caused by the liver fluke Fasciola hepatica that can have a major economic impact on livestock industry. The prevalence of the disease has recently been increasing in many North European countries. The objective of this study was to determine the prevalence of antibody against F. hepatica in Finnish cattle herds and sheep flocks during 2019 by using a commercial enzyme-linked immunosorbent assay (ELISA). Randomly selected bulk tank milk samples were obtained from 660 dairy herds. Blood samples were collected at slaughterhouses from 1944 suckler cows from 309 herds and from 1120 sheep from 95 flocks. Results Antibodies against F. hepatica were found in 0.45% (95% confidence interval (CI): 0.15–1.33) of the dairy herds and 0.97% (95% CI: 0.33–2.82) of the suckler cow herds. The seropositive herds were located in eastern and central Finland. None of the sampled sheep flocks tested had antibodies against F. hepatica (95% CI: 0–3.89). The results of the assays were compared with meat inspection data received from the slaughterhouses. All positive herds also had liver condemnations due to F. hepatica based on the meat inspection reports. Conclusions Compared to other North European countries, the prevalence of fasciolosis in Finland can be considered low, and according to meat inspection reports, there are no indications of the prevalence increasing in Finland.
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- 2023
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44. Screening autism-associated environmental factors in differentiating human neural progenitors with fractional factorial design-based transcriptomics
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Abishek Arora, Martin Becker, Cátia Marques, Marika Oksanen, Danyang Li, Francesca Mastropasqua, Michelle Evelyn Watts, Manish Arora, Anna Falk, Carsten Oliver Daub, Ingela Lanekoff, and Kristiina Tammimies
- Subjects
Medicine ,Science - Abstract
Abstract Research continues to identify genetic variation, environmental exposures, and their mixtures underlying different diseases and conditions. There is a need for screening methods to understand the molecular outcomes of such factors. Here, we investigate a highly efficient and multiplexable, fractional factorial experimental design (FFED) to study six environmental factors (lead, valproic acid, bisphenol A, ethanol, fluoxetine hydrochloride and zinc deficiency) and four human induced pluripotent stem cell line derived differentiating human neural progenitors. We showcase the FFED coupled with RNA-sequencing to identify the effects of low-grade exposures to these environmental factors and analyse the results in the context of autism spectrum disorder (ASD). We performed this after 5-day exposures on differentiating human neural progenitors accompanied by a layered analytical approach and detected several convergent and divergent, gene and pathway level responses. We revealed significant upregulation of pathways related to synaptic function and lipid metabolism following lead and fluoxetine exposure, respectively. Moreover, fluoxetine exposure elevated several fatty acids when validated using mass spectrometry-based metabolomics. Our study demonstrates that the FFED can be used for multiplexed transcriptomic analyses to detect relevant pathway-level changes in human neural development caused by low-grade environmental risk factors. Future studies will require multiple cell lines with different genetic backgrounds for characterising the effects of environmental exposures in ASD.
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- 2023
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45. Circular RNAs arising from synaptic host genes during human neuronal differentiation are modulated by SFPQ RNA-binding protein
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Michelle E. Watts, Marika Oksanen, Sanna Lejerkrans, Francesca Mastropasqua, Myriam Gorospe, and Kristiina Tammimies
- Subjects
Circular RNA ,SFPQ ,Neuronal differentiation ,Genetic variation ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background Circular RNA (circRNA) molecules, generated through non-canonical back-splicing of exon-exon junctions, have recently been implicated in diverse biological functions including transcriptional regulation and modulation of protein interactions. CircRNAs are emerging as a key component of the complex neural transcriptome implicated in brain development. However, the specific expression patterns and functions of circRNAs in human neuronal differentiation have not been explored. Results Using total RNA sequencing analysis, we identified expressed circRNAs during the differentiation of human neuroepithelial stem (NES) cells into developing neurons and discovered that many circRNAs originated from host genes associated with synaptic function. Interestingly, when assessing population data, exons giving rise to circRNAs in our dataset had a higher frequency of genetic variants. Additionally, screening for RNA-binding protein sites identified enrichment of Splicing Factor Proline and Glutamine Rich (SFPQ) motifs in increased circRNAs, several of which were reduced by SFPQ knockdown and enriched in SFPQ ribonucleoprotein complexes. Conclusions Our study provides an in-depth characterisation of circRNAs in a human neuronal differentiation model and highlights SFPQ as both a regulator and binding partner of circRNAs elevated during neuronal maturation.
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- 2023
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46. Virtual visits at the Helsinki Head and Neck Center during the COVID-19 pandemic: patient safety incidents and the experiences of patients and staff
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Morag Tolvi, Lotta-Maria Oksanen, Lasse Lehtonen, Ahmed Geneid, Pia Männikkö, Hellevi Ruokonen, Anna Majander, Susan Arminen, and Leena-Maija Aaltonen
- Subjects
Virtual visits ,Patient safety ,Patient satisfaction ,Staff satisfaction ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background During the COVID-19 pandemic, health care had to find new ways to care for patients while reducing infection transmission. The role of telemedicine role has grown exponentially. Methods A questionnaire on experiences and satisfaction was sent to the staff of the Head and Neck Center of Helsinki University Hospital and to otorhinolaryngology patients treated remotely between March and June 2020. Additionally, patient safety incident reports were examined for incidents involving virtual visits. Results Staff (response rate 30.6%, (n = 116)) opinions seemed to be quite polarized. In general, staff felt virtual visits were useful for select groups of patients and certain situations, and beneficial in addition to face-to-face visits, not instead of them. Patients (response rate 11.7%, (n = 77)) gave positive feedback on virtual visits, with savings in time (average 89 min), distance travelled (average 31.4 km) and travel expenses (average 13.84€). Conclusions While telemedicine was implemented during the COVID-19 pandemic to ensure patient treatment, its usefulness after the pandemic must be examined. Evaluation of treatment pathways is critical to ensure that quality of care is upheld while new treatment protocols are introduced. Telemedicine offers the opportunity to save environmental, temporal, and monetary resources. Nonetheless, the appropriate use of telemedicine is essential, and clinicians must be offered the option to examine and treat patients face-to-face.
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- 2023
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47. Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2023)
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Zerbini, Francisco Murilo, Siddell, Stuart G., Lefkowitz, Elliot J., Mushegian, Arcady R., Adriaenssens, Evelien M., Alfenas‑Zerbini, Poliane, Dempsey, Donald M., Dutilh, Bas E., García, María Laura, Hendrickson, R. Curtis, Junglen, Sandra, Krupovic, Mart, Kuhn, Jens H., Lambert, Amy J., Łobocka, Małgorzata, Oksanen, Hanna M., Robertson, David L., Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Smith, Donald B., Suzuki, Nobuhiro, Van Doorslaer, Koenraad, Vandamme, Anne‑Mieke, and Varsani, Arvind
- Published
- 2023
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48. Design considerations of a perception system in functional safety operated and highly automated mobile machines
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Changjoo Lee, Simon Schätzle, Stefan Andreas Lang, and Timo Oksanen
- Subjects
Highly automated agricultural machine ,Perception system ,Perception sensor ,Safety of the intended functionality ,Design considerations ,Evaluation ,Agriculture (General) ,S1-972 ,Agricultural industries ,HD9000-9495 - Abstract
Safe and reliable environmental perception is crucial for the highly automated or even autonomous operation of agriculture machines. However, despite the growing importance of robust perception systems, there is a lack of research on developing a generalized approach to designing and assessing their functional safety and reliability. This article describes the design and verification for the implementation of a functionally safe and reliable perception in a generalized manner. The normative references, ISO 25119, ISO 21448, and ISO 18497, which pertain to the functional safety design of highly automated mobile machines and vehicles, are introduced. This article explains the concept and considerations for designing a perception system. A new criterion ''perception density'' is proposed as a new standard unit to evaluate the spatial resolution of different types of perception sensors. To verify the performance of perception sensors, test scenarios were designed to address practical working conditions, including obstacles to be detected, foreseeable obscurity, test sites, and various lighting conditions. The test results were analysed and evaluated in light of the predetermined design considerations, and the perception sensors were quasi-numerically evaluated using the evaluation procedure.
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- 2023
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49. Shifting pattern of gut microbiota in pregnant women two decades apart – an observational study
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Samuli Rautava, Marta Selma-Royo, Teo Oksanen, Maria Carmen Collado, and Erika Isolauri
- Subjects
Fecal short-chain fatty acids ,gut microbiota ,obesity ,overweight ,pregnancy ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
ABSTRACTBackground: Past decades have witnessed a decrease in environmental biodiversity. We hypothesized a similar decrease in indigenous gut microbiota diversity, which may have contributed to the obesity epidemic.Objective: To investigate the changes in the composition and function of the gut microbiota in pregnant women over a period of 20 years.Study design: Altogether 124 pregnant women (41 overweight and matched 83 normal weight) pregnant in 1997, 2007 or 2017 were included in the study. The gut microbiota composition was assessed from fecal samples obtained at 32 weeks of gestation by 16S rRNA gene sequencing. Fecal short chain fatty acid (SCFA) profiles were measured by gas chromatography mass spectrometry (GC-MS).Results: Distinct gut microbiota profiles were detected in pregnant women from 1997, 2007 and 2017 (PERMANOVA Bray-Curtis R2 = 0.029, p = 0.001). The women pregnant in 1997 exhibited significantly higher microbiota richness and diversity as compared to those pregnant in 2007 and 2017. The total concentration of fecal SCFAs was significantly higher in the pregnant women in 1997 compared to those in 2007 and 2017. Significant differences in gut microbiota composition between normal weight and overweight women were manifest in 1997 but not in 2007 or 2017.Conclusions: The decrease in intestinal microbiota richness and diversity over two decades occurred in parallel with the decline in biodiversity in our natural surroundings. It appears that the gut microbiota of pregnant women has changed over time to a composition typical for overweight individuals.
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- 2023
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50. Deficiency of the Heterogeneous Nuclear Ribonucleoprotein U locus leads to delayed hindbrain neurogenesis
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Francesca Mastropasqua, Marika Oksanen, Cristina Soldini, Shemim Alatar, Abishek Arora, Roberto Ballarino, Maya Molinari, Federico Agostini, Axel Poulet, Michelle Watts, Ielyzaveta Rabkina, Martin Becker, Danyang Li, Britt-Marie Anderlid, Johan Isaksson, Karl Lundin Remnelius, Mohsen Moslem, Yannick Jacob, Anna Falk, Nicola Crosetto, Magda Bienko, Emanuela Santini, Anders Borgkvist, Sven Bölte, and Kristiina Tammimies
- Subjects
hnrnpu ,neurodevelopmental disorders ,neurogenesis ,hindbrain ,hic-sequencing ,rna-sequencing ,Science ,Biology (General) ,QH301-705.5 - Published
- 2023
- Full Text
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