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As coastal ecosystems become widely recognized for their capacity to sequester carbon (blue carbon), standard accounting methodologies for the generation of carbon credits are being developed. To ensure the applicability of these standards across blue carbon ecosystems, we investigated organic carbon provenance and burial in salt marshes and seagrass meadows of an arid, upwelling‐dominated Eastern Pacific lagoon. We found low carbon density in benthic sediments of Bahía de San Quintín (5.9 ± 0.5 mg C cm−3), only marginally higher in Zostera marina beds (6.9 ± 0.5 mg C cm−3), likely due to remineralization and hydrodynamically driven export of seagrass material, resulting in low carbon burial rates (4.5 ± 2.5 g C m−2 yr−1). Sediment organic carbon is mainly controlled by the fraction of fine sediment and its source is largely allochthonous, although sources differ spatially. Salt marshes at San Quintín derive 40% of their organic matter from autochthonous material and exhibit higher carbon burial rates (up to 414.7 ± 28.6 g C m−2 yr−1) and sediment carbon densities (32.0 ± 0.7 mg C cm−3) compared to benthic sediments. This study emphasizes the connectivity of blue carbon habitats with marsh plant detritus supplementing benthic carbon burial and incorporation of detrital eelgrass in marsh sediments. Our findings highlight the importance of allochthonous organic matter for carbon sequestration in blue carbon habitats, suggesting standard accounting practices that deduct allochthonous organic matter would miss the full potential for carbon burial. [ABSTRACT FROM AUTHOR]

The spatial analysis of biota, particulate organic matter, and sediments for stable isotopes of carbon (δ13C), nitrogen (δ15N), and sulfur (δ34S) have proved useful for identifying patterns in productivity, nutrient pollution, and relationships between biological and physiochemical variables at the local and global scales. Yet such approaches are rarely applied to studies of lagoon or estuarine metabolism. Focusing on Bahía San Quintín, a heterotrophic seagrass-dominated lagoon on the Pacific coast of Baja California, México, we report on spatial patterns in surficial sediment CNS stable isotopic ratios as tracers of lagoon biogeochemical function. Stable nitrogen isotopes highlighted potential spatial variability in the balance between denitrification and nitrogen-fixation within the lagoon and identified an association between elevated δ15N levels and oyster culture, suggesting that oyster presence may be enhancing N2 production. Spatial patterns in δ34S covaried with sediment particle size, underlining the importance of sediment texture in determining the depth of sub-oxic-anoxic redox zones. Sediment carbon stable isotope ratios highlighted the lack of incorporation of seagrass carbon into seagrass meadow sediments, thus emphasizing the importance of phytoplankton or microphytobenthos for carbon accumulation in seagrass meadows. This report highlights the value of sediment isotopic values in corroborating spatial patterns in estuarine metabolism or macronutrient processing identified from chamber or flux-based studies. Stable isotope mapping can provide a useful addition to assessment of estuarine metabolism, or act as a stand-alone tool for generating hypotheses, identifying the influence of spatial gradients, and/or suggesting prime locations for investigation of microbial abundance or function. [ABSTRACT FROM AUTHOR]