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Abstract This study aims to investigate the effect of wind direction (WD) on thermal and wind sensations, reconsider WS benchmarks, and propose modifications on physiological equivalent temperature (PET) and universal thermal climate index (UTCI) indices to reflect the effects of WD. A total of 1008 interviews were conducted outdoors with concurrent micrometeorological measurements in Tehran, Iran, comparing the preferred, neutral, neutral range, and acceptable ranges of UTCI and PET for subjects exposed to leeward and windward wind directions. The results indicated a deviation of 4.6 °C in neutral PET (nPET) and 4 °C in neutral UTCI (nUTCI) between windward and leeward wind directions. Additionally, the results showed that the subjects undergoing leeward wind direction revealed lower sensitivity to wind speed (WS), PET, and UTCI variations, and showed lower neutral and preferred temperatures/WS, and felt thermally acceptable in a wider gap. The results also disclosed that conducting the surveys neglecting the effects of WD may lead to a complete misunderstanding of the climate. Also, the empirical WS benchmarks were determined using techniques regularly used for thermal analysis. These benchmarks were specified separately for windward and leeward wind directions, knowledge of which may be useful in the planning and design of outdoor environments. Highlights • The effect of wind direction on outdoor thermal and wind sensations was investigated. • The subjects undergoing leeward wind direction revealed lower sensitivity to wind speed, PET, and UTCI variations. • Leeward subjects also had lower neutral and preferred temperatures, and felt thermally acceptable in a wider range. • It was showed that neglecting the effects of wind direction may lead to a complete misunderstanding of the climate. • Equations were proposed for considering the effect of wind direction in UTCI and PET indices. [ABSTRACT FROM AUTHOR]

Understanding spatial language is important in many applications such as geographical information systems, human computer interaction or text-to-scene conversion. Due to the challenges of designing spatial ontologies, the extraction of spatial information from natural language still has to be placed in a well-defined framework. In this work, we propose an ontology which bridges between cognitive–linguistic spatial concepts in natural language and multiple qualitative spatial representation and reasoning models. To make a mapping between natural language and the spatial ontology, we propose a novel global machine learning framework for ontology population. In this framework we consider relational features and background knowledge which originate from both ontological relationships between the concepts and the structure of the spatial language. The advantage of the proposed global learning model is the scalability of the inference, and the flexibility for automatically describing text with arbitrary semantic labels that form a structured ontological representation of its content. The machine learning framework is evaluated with SemEval-2012 and SemEval-2013 data from the spatial role labeling task. [ABSTRACT FROM AUTHOR]

Data-driven approaches are becoming increasingly common as problem-solving tools in many areas of science and technology. In most cases, machine learning models are the key component of these solutions. Often, a solution involves multiple learning models, along with significant levels of reasoning with the models' output and input. However, the current tools are cumbersome not only for domain experts who are not fluent in machine learning but also for machine learning experts who evaluate new algorithms and models on real-world data and develop AI systems. We review key efforts made by various AI communities in providing languages for high-level abstractions over learning and reasoning techniques needed for designing complex AI systems. We classify the existing frameworks based on the type of techniques and their data and knowledge representations, compare the ways the current tools address the challenges of programming real-world applications and highlight some shortcomings and future directions. Our comparison is only qualitative and not experimental since the performance of the systems is not a factor in our study., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Kordjamshidi, Roth and Kersting.)

In this paper, we present a novel strategy for automatic segmentation of biomedical images acquired from bio-engineered nerve tissues exhibiting variable morphological characteristics. Automatic image segmentation is one step towards the end goal of automatic analysis of the impact of various neurotoxic drug treatments on these artificial nerve tissues. We propose a deep learning architecture to perform this task. Our proposed architecture can be seen as a variation of U-Net that helps deal with a small manually annotated training data set. We present promising preliminary results and our human expert analysis shows that in some cases the model is even more precise in detecting the relevant morphological characteristics of the tissue compared to the manually annotated data. In the future, our model can be adapted for end-to-end automatic analysis of treated tissues. Moreover, based on a very small set of annotated data, it provides a reasonable segmentation to be used by human annotators. This will reduce the time of manual annotation significantly and streamline the process of generating a larger manually annotated data set for training our final ideal segmentation model.

Flooding is one of the leading threats of natural disasters to human life and property, especially in densely populated urban areas. Rapid and precise extraction of the flooded areas is key to supporting emergency-response planning and providing damage assessment in both spatial and temporal measurements. Unmanned Aerial Vehicles (UAV) technology has recently been recognized as an efficient photogrammetry data acquisition platform to quickly deliver high-resolution imagery because of its cost-effectiveness, ability to fly at lower altitudes, and ability to enter a hazardous area. Different image classification methods including SVM (Support Vector Machine) have been used for flood extent mapping. In recent years, there has been a significant improvement in remote sensing image classification using Convolutional Neural Networks (CNNs). CNNs have demonstrated excellent performance on various tasks including image classification, feature extraction, and segmentation. CNNs can learn features automatically from large datasets through the organization of multi-layers of neurons and have the ability to implement nonlinear decision functions. This study investigates the potential of CNN approaches to extract flooded areas from UAV imagery. A VGG-based fully convolutional network (FCN-16s) was used in this research. The model was fine-tuned and a k-fold cross-validation was applied to estimate the performance of the model on the new UAV imagery dataset. This approach allowed FCN-16s to be trained on the datasets that contained only one hundred training samples, and resulted in a highly accurate classification. Confusion matrix was calculated to estimate the accuracy of the proposed method. The image segmentation results obtained from FCN-16s were compared from the results obtained from FCN-8s, FCN-32s and SVMs. Experimental results showed that the FCNs could extract flooded areas precisely from UAV images compared to the traditional classifiers such as SVMs. The classification accuracy achieved by FCN-16s, FCN-8s, FCN-32s, and SVM for the water class was 97.52%, 97.8%, 94.20% and 89%, respectively.

We present Saul , a new probabilistic programming language designed to address some of the shortcomings of programming languages that aim at advancing and simplifying the development of AI systems. Such languages need to interact with messy, naturally occurring data, to allow a programmer to specify what needs to be done at an appropriate level of abstraction rather than at the data level, to be developed on a solid theory that supports moving to and reasoning at this level of abstraction and, finally, to support flexible integration of these learning and inference models within an application program. Saul is an object-functional programming language written in Scala that facilitates these by (1) allowing a programmer to learn, name and manipulate named abstractions over relational data; (2) supporting seamless incorporation of trainable (probabilistic or discriminative) components into the program, and (3) providing a level of inference over trainable models to support composition and make decisions that respect domain and application constraints. Saul is developed over a declaratively defined relational data model, can use piecewise learned factor graphs with declaratively specified learning and inference objectives, and it supports inference over probabilistic models augmented with declarative knowledge-based constraints. We describe the key constructs of Saul and exemplify its use in developing applications that require relational feature engineering and structured output prediction.

Background: We aim to automatically extract species names of bacteria and their locations from webpages. This task is important for exploiting the vast amount of biological knowledge which is expressed in diverse natural language texts and putting this knowledge in databases for easy access by biologists. The task is challenging and the previous results are far below an acceptable level of performance, particularly for extraction of localization relationships. Therefore, we aim to design a new system for such extractions, using the framework of structured machine learning techniques., Results: We design a new model for joint extraction of biomedical entities and the localization relationship. Our model is based on a spatial role labeling (SpRL) model designed for spatial understanding of unrestricted text. We extend SpRL to extract discourse level spatial relations in the biomedical domain and apply it on the BioNLP-ST 2013, BB-shared task. We highlight the main differences between general spatial language understanding and spatial information extraction from the scientific text which is the focus of this work. We exploit the text's structure and discourse level global features. Our model and the designed features substantially improve on the previous systems, achieving an absolute improvement of approximately 57 percent over F1 measure of the best previous system for this task., Conclusions: Our experimental results indicate that a joint learning model over all entities and relationships in a document outperforms a model which extracts entities and relationships independently. Our global learning model significantly improves the state-of-the-art results on this task and has a high potential to be adopted in other natural language processing (NLP) tasks in the biomedical domain.

There is a vast amount of scientific literature available from various resources such as the internet. Automating the extraction of knowledge from these resources is very helpful for biologists to easily access this information. This paper presents a system to extract the bacteria and their habitats, as well as the relations between them. We investigate to what extent current techniques are suited for this task and test a variety of models in this regard. We detect entities in a biological text and map the habitats into a given taxonomy. Our model uses a linear chain Conditional Random Field (CRF). For the prediction of relations between the entities, a model based on logistic regression is built. Designing a system upon these techniques, we explore several improvements for both the generation and selection of good candidates. One contribution to this lies in the extended exibility of our ontology mapper that uses an advanced boundary detection and assigns the taxonomy elements to the detected habitats. Furthermore, we discover value in the combination of several distinct candidate generation rules. Using these techniques, we show results that are significantly improving upon the state of art for the BioNLP Bacteria Biotopes task.