31 results on '"Koppitz, M"'
Search Results
2. X-RAY STRUCTURE OF MPS1 IN COMPLEX WITH COMPOUND 16
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Marquardt, T., primary, Holton, S.J., additional, Schulze, V.K., additional, Klar, U., additional, Kosemund, D., additional, Siemeister, G., additional, Bader, B., additional, Prechtl, S., additional, Briem, H., additional, Schirok, H., additional, Bohlmann, R., additional, Nguyen, D., additional, Fernandez-Montalvan, A., additional, Boemer, U., additional, Eberspaecher, U., additional, Brands, M., additional, Nussbaum, F., additional, and Koppitz, M., additional
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- 2020
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3. X-RAY STRUCTURE OF MPS1 IN COMPLEX WITH COMPOUND 41
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Holton, S.J., primary, Schulze, V.K., additional, Klar, U., additional, Kosemund, D., additional, Siemeister, G., additional, Bader, B., additional, Prechtl, S., additional, Briem, H., additional, Marquardt, T., additional, Schirok, H., additional, Bohlmann, R., additional, Nguyen, D., additional, Fernandez-Montalvan, A., additional, Boemer, U., additional, Eberspaecher, U., additional, Brands, M., additional, Nussbaum, F., additional, and Koppitz, M., additional
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- 2020
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4. X-RAY STRUCTURE OF MPS1 IN COMPLEX WITH COMPOUND 46
- Author
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Marquardt, T., primary, Holton, S.J., additional, Schulze, V.K., additional, Klar, U., additional, Kosemund, D., additional, Siemeister, G., additional, Bader, B., additional, Prechtl, S., additional, Briem, H., additional, Schirok, H., additional, Bohlmann, R., additional, Nguyen, D., additional, Fernandez-Montalvan, A., additional, Boemer, U., additional, Eberspaecher, U., additional, Brands, M., additional, Nussbaum, F., additional, and Koppitz, M., additional
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- 2020
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5. Lipoconjugates: structure—activity studies for pheromone analogues of Ustilago maydis with varied lipophilicity
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KOPPITZ, M., SPELLIG, T., KAHMANN, R., and KESSLER, H.
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- 1996
6. Development of urokinase-derived peptide analogues as potential therapeutic agents to block tumor invasion and metastasis
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Goretzki, L., Koppitz, M., Wilhelm, O., Weidle, U., Bognackl, J., Rettenberger, P., Kessler, H., Magdolen, V., Schmitt, M., and Graeff, H.
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- 1995
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7. P.2.b.018 - Nitric oxide-related biomarkers for depression-induced cardiovascular risk
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Amouzadeh-Ghadikolai, O., Baranyi, A., Rothenhäusler, H.B., Theokas, S., Robier, C., Baranyi, M., Koppitz, M., Reicht, G., Hlade, P., and Meinitzer, A.
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- 2016
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8. Characterization of novel MPS1 inhibitors with preclinical anticancer activity.
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Jemaà, M, Galluzzi, L, Kepp, O, Senovilla, L, Brands, M, Boemer, U, Koppitz, M, Lienau, P, Prechtl, S, Schulze, V, Siemeister, G, Wengner, A M, Mumberg, D, Ziegelbauer, K, Abrieu, A, Castedo, M, Vitale, I, and Kroemer, G
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KINASES ,CANCER cell proliferation ,XENOGRAFTS ,HISTONES ,ANAPHASE - Abstract
Monopolar spindle 1 (MPS1), a mitotic kinase that is overexpressed in several human cancers, contributes to the alignment of chromosomes to the metaphase plate as well as to the execution of the spindle assembly checkpoint (SAC). Here, we report the identification and functional characterization of three novel inhibitors of MPS1 of two independent structural classes, N-(4-{2-[(2-cyanophenyl)amino][1,2,4]triazolo[1,5-a]pyridin-6-yl}phenyl)-2-phenylacetamide (Mps-BAY1) (a triazolopyridine), N-cyclopropyl-4-{8-[(2-methylpropyl)amino]-6-(quinolin-5-yl)imidazo[1,2-a]pyrazin-3-yl}benzamide (Mps-BAY2a) and N-cyclopropyl-4-{8-(isobutylamino)imidazo[1,2-a]pyrazin-3-yl}benzamide (Mps-BAY2b) (two imidazopyrazines). By selectively inactivating MPS1, these small inhibitors can arrest the proliferation of cancer cells, causing their polyploidization and/or their demise. Cancer cells treated with Mps-BAY1 or Mps-BAY2a manifested multiple signs of mitotic perturbation including inefficient chromosomal congression during metaphase, unscheduled SAC inactivation and severe anaphase defects. Videomicroscopic cell fate profiling of histone 2B-green fluorescent protein-expressing cells revealed the capacity of MPS1 inhibitors to subvert the correct timing of mitosis as they induce a premature anaphase entry in the context of misaligned metaphase plates. Hence, in the presence of MPS1 inhibitors, cells either divided in a bipolar (but often asymmetric) manner or entered one or more rounds of abortive mitoses, generating gross aneuploidy and polyploidy, respectively. In both cases, cells ultimately succumbed to the mitotic catastrophe-induced activation of the mitochondrial pathway of apoptosis. Of note, low doses of MPS1 inhibitors and paclitaxel (a microtubular poison) synergized at increasing the frequency of chromosome misalignments and missegregations in the context of SAC inactivation. This resulted in massive polyploidization followed by the activation of mitotic catastrophe. A synergistic interaction between paclitaxel and MPS1 inhibitors could also be demonstrated in vivo, as the combination of these agents efficiently reduced the growth of tumor xenografts and exerted superior antineoplastic effects compared with either compound employed alone. Altogether, these results suggest that MPS1 inhibitors may exert robust anticancer activity, either as standalone therapeutic interventions or combined with microtubule-targeting chemicals. [ABSTRACT FROM AUTHOR]
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- 2013
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9. Quantitative assessment of interaction of urokinase-type plasminogen activator and its receptor (CD87) by use of a solid-phase uPA-ligand binding assay
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Goretzki, L., Bognacki, J., Koppitz, M., Rettenberger, P., Magdolen, V., Creutzburg, S., Hammelburger, J., Weidle, U.H., Wilhelm, O., Kessler, H., Graeff, H., and Schmitt, M.
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- 1997
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10. On the effect of carrier gas on growth conditions in MOCVD reactors; Raman study of local temperature
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Koppitz, M., Vestavik, O., Pletschen, W., Mircea, A., Heyen, M., and Richter, W.
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- 1984
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11. ChemInform Abstract: Synthesis of Unnatural Lipophilic N-(9H-Fluoren-9-ylmethoxy)carbonyl- Substituted α-Amino Acids and Their Incorporation into Cylic RGD- Peptides: A Structure-Activity Study.
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KOPPITZ, M., HUENGES, M., GRATIAS, R., KESSLER, H., GOODMAN, S. L., and JONCZYK, A.
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- 1997
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12. New AI-algorithms on smartphones to detect skin cancer in a clinical setting-A validation study.
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Kränke T, Tripolt-Droschl K, Röd L, Hofmann-Wellenhof R, Koppitz M, and Tripolt M
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- Humans, Female, Aged, Smartphone, Prospective Studies, Algorithms, Neural Networks, Computer, Sensitivity and Specificity, Melanoma pathology, Skin Neoplasms diagnosis, Skin Neoplasms pathology
- Abstract
Background and Objectives: The incidence of skin cancer is rising worldwide and there is medical need to optimize its early detection. This study was conducted to determine the diagnostic and risk-assessment accuracy of two new diagnosis-based neural networks (analyze and detect), which comply with the CE-criteria, in evaluating the malignant potential of various skin lesions on a smartphone. Of note, the intention of our study was to evaluate the performance of these medical products in a clinical setting for the first time., Methods: This was a prospective, single-center clinical study at one tertiary referral center in Graz, Austria. Patients, who were either scheduled for preventive skin examination or removal of at least one skin lesion were eligible for participation. Patients were assessed by at least two dermatologists and by the integrated algorithms on different mobile phones. The lesions to be recorded were randomly selected by the dermatologists. The diagnosis of the algorithm was stated as correct if it matched the diagnosis of the two dermatologists or the histology (if available). The histology was the reference standard, however, if both clinicians considered a lesion as being benign no histology was performed and the dermatologists were stated as reference standard., Results: A total of 238 patients with 1171 lesions (86 female; 36.13%) with an average age of 66.19 (SD = 17.05) was included. Sensitivity and specificity of the detect algorithm were 96.4% (CI 93.94-98.85) and 94.85% (CI 92.46-97.23); for the analyze algorithm a sensitivity of 95.35% (CI 93.45-97.25) and a specificity of 90.32% (CI 88.1-92.54) were achieved., Discussion: The studied neural networks succeeded analyzing the risk of skin lesions with a high diagnostic accuracy showing that they are sufficient tools in calculating the probability of a skin lesion being malignant. In conjunction with the wide spread use of smartphones this new AI approach opens the opportunity for a higher early detection rate of skin cancer with consecutive lower epidemiological burden of metastatic cancer and reducing health care costs. This neural network moreover facilitates the empowerment of patients, especially in regions with a low density of medical doctors., Registration: Approved and registered at the ethics committee of the Medical University of Graz, Austria (Approval number: 30-199 ex 17/18)., Competing Interests: Michael Koppitz and Michael Tripolt share a company founded after finishing the study to produce a consumer-usable early skin cancer detection app. This does not alter our adherence to PLOS ONE policies on sharing data and materials. The remaining authors have no conflicts of interest to declare., (Copyright: © 2023 Kränke et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2023
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13. Treating Cancer by Spindle Assembly Checkpoint Abrogation: Discovery of Two Clinical Candidates, BAY 1161909 and BAY 1217389, Targeting MPS1 Kinase.
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Schulze VK, Klar U, Kosemund D, Wengner AM, Siemeister G, Stöckigt D, Neuhaus R, Lienau P, Bader B, Prechtl S, Holton SJ, Briem H, Marquardt T, Schirok H, Jautelat R, Bohlmann R, Nguyen D, Fernández-Montalván AE, Bömer U, Eberspaecher U, Brüning M, Döhr O, Raschke M, Kreft B, Mumberg D, Ziegelbauer K, Brands M, von Nussbaum F, and Koppitz M
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- Animals, Antineoplastic Agents chemistry, Antineoplastic Agents pharmacology, Cell Cycle Proteins antagonists & inhibitors, Cell Line, Tumor, Dogs, Female, HT29 Cells, HeLa Cells, Humans, M Phase Cell Cycle Checkpoints physiology, Male, Microsomes, Liver drug effects, Microsomes, Liver metabolism, Protein Serine-Threonine Kinases antagonists & inhibitors, Protein Structure, Tertiary, Protein-Tyrosine Kinases antagonists & inhibitors, Rats, Rats, Wistar, Spindle Apparatus metabolism, Treatment Outcome, Antineoplastic Agents metabolism, Cell Cycle Proteins metabolism, Drug Delivery Systems methods, Drug Discovery methods, M Phase Cell Cycle Checkpoints drug effects, Protein Serine-Threonine Kinases metabolism, Protein-Tyrosine Kinases metabolism, Spindle Apparatus drug effects
- Abstract
Inhibition of monopolar spindle 1 (MPS1) kinase represents a novel approach to cancer treatment: instead of arresting the cell cycle in tumor cells, cells are driven into mitosis irrespective of DNA damage and unattached/misattached chromosomes, resulting in aneuploidy and cell death. Starting points for our optimization efforts with the goal to identify MPS1 inhibitors were two HTS hits from the distinct chemical series "triazolopyridines" and "imidazopyrazines". The major initial issue of the triazolopyridine series was the moderate potency of the HTS hits. The imidazopyrazine series displayed more than 10-fold higher potencies; however, in the early project phase, this series suffered from poor metabolic stability. Here, we outline the evolution of the two hit series to clinical candidates BAY 1161909 and BAY 1217389 and reveal how both clinical candidates bind to the ATP site of MPS1 kinase, while addressing different pockets utilizing different binding interactions, along with their synthesis and preclinical characterization in selected in vivo efficacy models.
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- 2020
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14. Damage Incorporated: Discovery of the Potent, Highly Selective, Orally Available ATR Inhibitor BAY 1895344 with Favorable Pharmacokinetic Properties and Promising Efficacy in Monotherapy and in Combination Treatments in Preclinical Tumor Models.
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Lücking U, Wortmann L, Wengner AM, Lefranc J, Lienau P, Briem H, Siemeister G, Bömer U, Denner K, Schäfer M, Koppitz M, Eis K, Bartels F, Bader B, Bone W, Moosmayer D, Holton SJ, Eberspächer U, Grudzinska-Goebel J, Schatz C, Deeg G, Mumberg D, and von Nussbaum F
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- Administration, Oral, Animals, Antineoplastic Agents chemistry, Antineoplastic Combined Chemotherapy Protocols pharmacology, Ataxia Telangiectasia Mutated Proteins chemistry, Ataxia Telangiectasia Mutated Proteins metabolism, Biological Availability, Carboplatin administration & dosage, Cell Line, Tumor, Cell Proliferation drug effects, Crystallography, X-Ray, Cytochrome P-450 CYP2C8 Inhibitors chemistry, Cytochrome P-450 CYP2C8 Inhibitors pharmacology, DNA Repair drug effects, Dogs, Drug Discovery, Drug Screening Assays, Antitumor, Drug Stability, Female, Humans, Mice, SCID, Microsomes, Liver drug effects, Morpholines chemistry, Pyrazoles chemistry, Rats, Wistar, Structure-Activity Relationship, Xenograft Model Antitumor Assays, Antineoplastic Agents administration & dosage, Antineoplastic Agents pharmacokinetics, Ataxia Telangiectasia Mutated Proteins antagonists & inhibitors, Morpholines administration & dosage, Morpholines pharmacokinetics, Pyrazoles administration & dosage, Pyrazoles pharmacokinetics
- Abstract
The ATR kinase plays a key role in the DNA damage response by activating essential signaling pathways of DNA damage repair, especially in response to replication stress. Because DNA damage and replication stress are major sources of genomic instability, selective ATR inhibition has been recognized as a promising new approach in cancer therapy. We now report the identification and preclinical evaluation of the novel, clinical ATR inhibitor BAY 1895344. Starting from quinoline 2 with weak ATR inhibitory activity, lead optimization efforts focusing on potency, selectivity, and oral bioavailability led to the discovery of the potent, highly selective, orally available ATR inhibitor BAY 1895344, which exhibited strong monotherapy efficacy in cancer xenograft models that carry certain DNA damage repair deficiencies. Moreover, combination treatment of BAY 1895344 with certain DNA damage inducing chemotherapy resulted in synergistic antitumor activity. BAY 1895344 is currently under clinical investigation in patients with advanced solid tumors and lymphomas (NCT03188965).
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- 2020
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15. Discovery of BAY-298 and BAY-899: Tetrahydro-1,6-naphthyridine-Based, Potent, and Selective Antagonists of the Luteinizing Hormone Receptor Which Reduce Sex Hormone Levels in Vivo.
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Wortmann L, Lindenthal B, Muhn P, Walter A, Nubbemeyer R, Heldmann D, Sobek L, Morandi F, Schrey AK, Moosmayer D, Günther J, Kuhnke J, Koppitz M, Lücking U, Röhn U, Schäfer M, Nowak-Reppel K, Kühne R, Weinmann H, and Langer G
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- Administration, Oral, Animals, Biological Availability, Dose-Response Relationship, Drug, ERG1 Potassium Channel metabolism, Female, Granulosa Cells drug effects, High-Throughput Screening Assays, Humans, Male, Mice, Microsomes, Liver drug effects, Ovulation drug effects, Ovulation genetics, Progesterone blood, Rats, Wistar, Receptors, FSH antagonists & inhibitors, Receptors, LH metabolism, Structure-Activity Relationship, Testosterone blood, Estradiol blood, Naphthyridines chemistry, Receptors, LH antagonists & inhibitors
- Abstract
The human luteinizing hormone receptor (hLH-R) is a member of the glycoprotein hormone family of G-protein-coupled receptors (GPCRs), activated by luteinizing hormone (hLH) and essentially involved in the regulation of sex hormone production. Thus, hLH-R represents a valid target for the treatment of sex hormone-dependent cancers and diseases (polycystic ovary syndrome, uterine fibroids, endometriosis) as well as contraception. Screening of the Bayer compound library led to the discovery of tetrahydrothienopyridine derivatives as novel, small-molecule (SMOL) hLH-R inhibitors and to the development of BAY-298, the first nanomolar hLH-R antagonist reducing sex hormone levels in vivo. Further optimization of physicochemical, pharmacokinetic, and safety parameters led to the identification of BAY-899 with an improved in vitro profile and proven efficacy in vivo. BAY-298 and BAY-899 serve as valuable tool compounds to study hLH-R signaling in vitro and to interfere with the production of sex hormones in vivo.
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- 2019
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16. Discovery and optimization of pyridyl-cycloalkyl-carboxylic acids as inhibitors of microsomal prostaglandin E synthase-1 for the treatment of endometriosis.
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Koppitz M, Bräuer N, Ter Laak A, Irlbacher H, Rotgeri A, Coelho AM, Walter D, Steinmeyer A, Zollner TM, Peters M, and Nagel J
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- Animals, Carboxylic Acids chemical synthesis, Carboxylic Acids chemistry, Disease Models, Animal, Dose-Response Relationship, Drug, Endometriosis metabolism, Enzyme Inhibitors chemical synthesis, Enzyme Inhibitors chemistry, Female, Humans, Inflammation drug therapy, Inflammation metabolism, Mice, Molecular Docking Simulation, Molecular Structure, Pain drug therapy, Pain metabolism, Prostaglandin-E Synthases metabolism, Rats, Structure-Activity Relationship, Carboxylic Acids pharmacology, Drug Discovery, Endometriosis drug therapy, Enzyme Inhibitors pharmacology, Prostaglandin-E Synthases antagonists & inhibitors
- Abstract
Here we report on novel and potent pyridyl-cycloalkyl-carboxylic acid inhibitors of microsomal prostaglandin E synthase-1 (PTGES). PTGES produces, as part of the prostaglandin pathway, prostaglandin E2 which is a well-known driver for pain and inflammation. This fact together with the observed upregulation of PTGES during inflammation suggests that blockade of the enzyme might provide a beneficial treatment option for inflammation related conditions such as endometriosis. Compound 5a, a close analogue of the screening hit, potently inhibited PTGES in vitro, displayed excellent PK properties in vitro and in vivo and demonstrated efficacy in a CFA-induced pain model in mice and in a rat dyspareunia endometriosis model and was therefore selected for further studies., (Copyright © 2019 Elsevier Ltd. All rights reserved.)
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- 2019
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17. Mucolytic Effectiveness of Tyloxapol in Chronic Obstructive Pulmonary Disease - A Double-Blind, Randomized Controlled Trial.
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Koppitz M, Eschenburg C, Salzmann E, Rosewich M, Schubert R, and Zielen S
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- Administration, Inhalation, Aged, Double-Blind Method, Expectorants adverse effects, Female, Forced Expiratory Volume drug effects, Humans, Inflammation physiopathology, Male, Middle Aged, Polyethylene Glycols adverse effects, Pulmonary Disease, Chronic Obstructive physiopathology, Sputum drug effects, Treatment Outcome, Expectorants administration & dosage, Inflammation drug therapy, Polyethylene Glycols administration & dosage, Pulmonary Disease, Chronic Obstructive drug therapy
- Abstract
Objective: Mucoactive drugs should increase the ability to expectorate sputum and, ideally, have anti-inflammatory properties. The aim of the study was to evaluate the mucolytic activity of Tyloxapol compared to saline (0.9%) in COPD., Design: A randomized, placebo-controlled, double-blinded crossover, clinical trial was carried out. Patients were randomly assigned to either inhale 5 ml Tyloxapol 1% or saline 0.9% solution three times daily for 3 weeks and vice versa for another 3 weeks. 28 patients (18 male, 10 female, 47 to 73 years old, median age 63.50) were screened, 21 were treated and 19 patients completed the study per protocol., Results: A comparison of the two treatment phases showed that the primary endpoint sputum weight was statistically significant higher when patients inhaled Tyloxapol (mean 4.03 g, 95% CI: 2.34-5.73 g at week 3) compared to saline (mean 2.63 g, 95% CI: 1.73-3.53 g at week 3). The p-value at three weeks of treatment was 0.041 between treatment arms. Sputum cells decreased during the Tyloxapol treatment after 3 weeks, indicating that Tyloxapol might have some anti-neutrophilic properties. Lung function parameters (FVC, FEV1, RV, and RV/TLC) remained stable during the study, and no treatment effect was shown. Interestingly, there was a mean increase in all inflammatory cytokines (IL-1β, IL-6, and IL-8) during the saline treatment from day 1 to week 3, whereas during the Tyloxapol treatment, all cytokines decreased. Due to the small sample size and the large individual variation in sputum cytokines, these differences were not significant. However, analyses confirmed that Tyloxapol has significant anti-inflammatory properties in vitro. Despite the high number of inhalations (more than 1000), only 27 adverse events (20 during the Tyloxapol and seven during saline) were recorded. Eleven patients experienced AEs under Tyloxapol and six under saline treatment, which indicates that inhalation of saline or Tyloxapol is a very safe procedure., Conclusion: Our study demonstrated that inhalation of Tyloxapol by patients with COPD is safe and superior to saline and has some anti-inflammatory effects., Trial Registration: ClinicalTrials.gov NCT02515799.
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- 2016
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18. Understanding the angle-independent photon harvesting in organic homo-tandem solar cells.
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Mertens A, Mescher J, Bahro D, Koppitz M, and Colsmann A
- Abstract
The effective device photo current of organic tandem solar cells is independent of the angle of light incidence up to 65°. This feature renders these devices particularly suitable for stationary applications where they receive mainly indirect light. In a combined experimental and simulative study, we develop a fundamental understanding of the causal absorption and charge generation mechanisms in organic homo-tandem solar cells. A 3-terminal tandem device architecture is used to measure the optoelectronic properties of both subcells individually. The analysis of the angle dependent external quantum efficiencies of the subcells and the tandem device reveal an internal balancing of the wavelength dependent subcell currents elucidating the low sensitivity of the tandem device properties on the angle of incidence.
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- 2016
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19. Novel Mps1 Kinase Inhibitors with Potent Antitumor Activity.
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Wengner AM, Siemeister G, Koppitz M, Schulze V, Kosemund D, Klar U, Stoeckigt D, Neuhaus R, Lienau P, Bader B, Prechtl S, Raschke M, Frisk AL, von Ahsen O, Michels M, Kreft B, von Nussbaum F, Brands M, Mumberg D, and Ziegelbauer K
- Subjects
- Animals, Antineoplastic Agents chemistry, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Cell Line, Tumor, Cell Proliferation drug effects, Disease Models, Animal, Drug Discovery, Drug Evaluation, Preclinical, Enzyme Activation drug effects, Female, Humans, Male, Mice, Mitosis drug effects, Protein Kinase Inhibitors chemistry, Rats, Tumor Burden drug effects, Xenograft Model Antitumor Assays, Antineoplastic Agents pharmacology, Cell Cycle Proteins antagonists & inhibitors, Protein Kinase Inhibitors pharmacology, Protein Serine-Threonine Kinases antagonists & inhibitors, Protein-Tyrosine Kinases antagonists & inhibitors
- Abstract
Monopolar spindle 1 (Mps1) has been shown to function as the key kinase that activates the spindle assembly checkpoint (SAC) to secure proper distribution of chromosomes to daughter cells. Here, we report the structure and functional characterization of two novel selective Mps1 inhibitors, BAY 1161909 and BAY 1217389, derived from structurally distinct chemical classes. BAY 1161909 and BAY 1217389 inhibited Mps1 kinase activity with IC50 values below 10 nmol/L while showing an excellent selectivity profile. In cellular mechanistic assays, both Mps1 inhibitors abrogated nocodazole-induced SAC activity and induced premature exit from mitosis ("mitotic breakthrough"), resulting in multinuclearity and tumor cell death. Both compounds efficiently inhibited tumor cell proliferation in vitro (IC50 nmol/L range). In vivo, BAY 1161909 and BAY 1217389 achieved moderate efficacy in monotherapy in tumor xenograft studies. However, in line with its unique mode of action, when combined with paclitaxel, low doses of Mps1 inhibitor reduced paclitaxel-induced mitotic arrest by the weakening of SAC activity. As a result, combination therapy strongly improved efficacy over paclitaxel or Mps1 inhibitor monotreatment at the respective MTDs in a broad range of xenograft models, including those showing acquired or intrinsic paclitaxel resistance. Both Mps1 inhibitors showed good tolerability without adding toxicity to paclitaxel monotherapy. These preclinical findings validate the innovative concept of SAC abrogation for cancer therapy and justify clinical proof-of-concept studies evaluating the Mps1 inhibitors BAY 1161909 and BAY 1217389 in combination with antimitotic cancer drugs to enhance their efficacy and potentially overcome resistance. Mol Cancer Ther; 15(4); 583-92. ©2016 AACR., (©2016 American Association for Cancer Research.)
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- 2016
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20. Nitric Oxide-Related Biological Pathways in Patients with Major Depression.
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Baranyi A, Amouzadeh-Ghadikolai O, Rothenhäusler HB, Theokas S, Robier C, Baranyi M, Koppitz M, Reicht G, Hlade P, and Meinitzer A
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- Adult, Arginase metabolism, Arginine analogs & derivatives, Arginine metabolism, Biological Availability, Case-Control Studies, Demography, Female, Humans, Male, Middle Aged, Psychometrics, Depressive Disorder, Major metabolism, Nitric Oxide metabolism, Signal Transduction
- Abstract
Background: Major depression is a well-known risk factor for cardiovascular diseases and increased mortality following myocardial infarction. However, biomarkers of depression and increased cardiovascular risk are still missing. The aim of this prospective study was to evaluate, whether nitric-oxide (NO) related factors for endothelial dysfunction, such as global arginine bioavailability, arginase activity, L-arginine/ADMA ratio and the arginine metabolites asymmetric dimethylarginine (ADMA) and symmetric dimethylarginine (SDMA) might be biomarkers for depression-induced cardiovascular risk., Methods: In 71 in-patients with major depression and 48 healthy controls the Global Arginine Bioavailability Ratio (GABR), arginase activity (arginine/ornithine ratio), the L-arginine/ADMA ratio, ADMA, and SDMA were determined by high-pressure liquid chromatography. Psychiatric and laboratory assessments were obtained at baseline at the time of in-patient admittance and at the time of hospital discharge., Results: The ADMA concentrations in patients with major depression were significantly elevated and the SDMA concentrations were significantly decreased in comparison with the healthy controls. Even after a first improvement of depression, ADMA and SDMA levels remained nearly unchanged. In addition, after a first improvement of depression at the time of hospital discharge, a significant decrease in arginase activity, an increased L-arginine/ADMA ratio and a trend for increased global arginine bioavailability were observed., Conclusions: Our study results are evidence that in patients with major depression ADMA and SDMA might be biomarkers to indicate an increased cardiovascular threat due to depression-triggered NO reduction. GABR, the L-arginine/ADMA ratio and arginase activity might be indicators of therapy success and increased NO production after remission.
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- 2015
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21. Maximizing efficiency in the production of compound libraries.
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Koppitz M
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- Chromatography, High Pressure Liquid, Magnetics, Mass Spectrometry, Microwaves, Molecular Structure, Software, Solvents, Combinatorial Chemistry Techniques instrumentation, Combinatorial Chemistry Techniques methods
- Abstract
Efficiency is one of the most important criteria in departments responsible for the production of compounds in a library format. Consequently, this was a key factor in the initial design of our automated medicinal chemistry department, established some years ago. Nonetheless, we were able to improve and optimize our workflows and processes constantly. Here, we outline our current setup, from design to submission of libraries, and discuss which procedures and techniques appear to be useful for us and which ones turned out to be less effective. The aim of the manuscript is not to present individualized and tailor-made solutions in our laboratory but rather to describe approaches (often executed with commercial equipment) which might be of relevance for a broader readership working in this field.
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- 2008
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22. Recoil velocities from equal-mass binary-black-hole mergers.
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Koppitz M, Pollney D, Reisswig C, Rezzolla L, Thornburg J, Diener P, and Schnetter E
- Abstract
The final evolution of a binary-black-hole system gives rise to a recoil velocity if an asymmetry is present in the emitted gravitational radiation. Measurements of this effect for nonspinning binaries with unequal masses have pointed out that kick velocities approximately 175 km/s can be reached for a mass ratio approximately 0.36. However, a larger recoil can be obtained for equal-mass binaries if the asymmetry is provided by the spins. Using two independent methods we show that the merger of such binaries yields velocities as large as approximately 440 km/s for black holes having unequal spins that are antialigned and parallel to the orbital angular momentum.
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- 2007
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23. Automated medicinal chemistry.
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Koppitz M and Eis K
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- Combinatorial Chemistry Techniques instrumentation, Combinatorial Chemistry Techniques methods, Combinatorial Chemistry Techniques trends, Drug Design, Pharmaceutical Preparations chemical synthesis, Pharmaceutical Preparations chemistry
- Abstract
With the advent of high throughput technologies in biological screening in the 1980s, providing sufficient numbers of small molecules for screening became a bottleneck in the drug discovery process. Combinatorial chemistry was the first attempt by chemists to address this issue. However, since its first applications, combinatorial chemistry has evolved rapidly into diverse fields. This review will focus on the evolution and the current status of what we refer to today as automated medicinal chemistry.
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- 2006
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24. Gravitational-wave extraction from an inspiraling configuration of merging black holes.
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Baker JG, Centrella J, Choi DI, Koppitz M, and van Meter J
- Abstract
We present new ideas for evolving black holes through a computational grid without excision, which enable accurate and stable evolutions of binary black hole systems with the accurate determination of gravitational waveforms directly from the wave zone region. Rather than excising the black hole interiors, our approach follows the "puncture" treatment of black holes, but utilizing a new gauge condition which allows the black holes to move successfully through the computational domain. We apply these techniques to an inspiraling binary, modeling the radiation generated during the final plunge and ringdown. We demonstrate convergence of the waveforms and good conservation of mass-energy, with just over 3% of the system's mass converted to gravitational radiation.
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- 2006
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25. Maximizing automation in LC/MS high-throughput analysis and purification.
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Koppitz M, Brailsford A, and Wenz M
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- Automation, Chemistry, Pharmaceutical instrumentation, Chemistry, Pharmaceutical methods, Pharmaceutical Preparations analysis, Software, Time Factors, Chromatography, Liquid methods, Combinatorial Chemistry Techniques methods, Spectrometry, Mass, Electrospray Ionization methods
- Abstract
Here, we describe a system for LC/MS-based analysis and purification of compounds aiming at the minimization of manual interference in the overall process. Key elements of the concept are automated identification of the target compounds, automated assignment of optimized preparative gradients for purification of the target compounds, and automated purity assessment of fractions with subsequent pooling of validated product fractions. Additional support is provided by an automated solvent and waste management system. One person can easily process 100-200 compounds on a 150-mg scale per day on that system, while still the maximization of purity and yield after purification is guaranteed. Reduced demands with respect to purity or yield can lead to significantly higher throughput numbers.
- Published
- 2005
- Full Text
- View/download PDF
26. Structure investigation of amphiphilic cyclopeptides in isotropic and anisotropic environments-A model study simulating peptide-membrane interactions.
- Author
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Koppitz M, Mathä B, and Kessler H
- Subjects
- Carbon Tetrachloride pharmacology, Chloroform pharmacology, Magnetic Resonance Spectroscopy, Models, Molecular, Protein Conformation, Sodium Dodecyl Sulfate pharmacology, Solvents, Cell Membrane chemistry, Peptides, Cyclic chemistry
- Abstract
It has been proposed that the membrane allows a much more efficient binding of certain small or medium-sized amphiphilic messenger molecules to their receptor, not only by accumulation of the drug, but also by induction of orientations and conformations that are much more favorable for receptor docking than structures adopted in isotropic phases. A series of eight amphiphilic cyclic peptides containing lipophilic (L-alpha-aminodecanoic acid = Ada, L-alpha-aminohexadecanoic acid = Ahd, Nhdg = N-hexadecylglycine) and hydrophilic (Lys, Asp) amino acids were synthesized and examined by means of NMR spectroscopy and molecular dynamics (MD) simulations in isotropic (CDCl3) and membrane-mimicking anisotropic (SDS/H2O) solvents to study the influence of the environment on their individual conformations. NMR data of cyclo(-Gly1-D-Asp2-Ahd3-Ahd4-Asp5-Gly6+ ++-) (C4), cyclo(-Lys1-D-Pro2-Lys3-Ada4-Pro5-Ada6-) (C5) and cyclo(-Lys1-Pro2-Lys3-Ada4-D-Pro5-Ada6-) (C6) clearly indicate that those compounds are too rigid to perform a conformational change upon transition from an isotropic to an anisotropic environment. On the other hand, the experimental data of cyclo (-Gly1-Asp2-Ahd3-Ahd4-Asp5-Gly6-) (C1), cyclo(-Asp1-Ala2-Nhdg3-Ala4-D-Asp5-) (C7), and cyclo(-D-Asp1-Ala2-Nhdg3-Ala4-Asp5-) (C8) suggest highly flexible unstructured molecules in both environments. However, for cyclo(-Asp1-Asp2-Gly3-Ahd4-Ahd5-Gly6-) (C2) we observed a structure inducing effect of a membrane-like environment. The compound populates three different conformations in SDS/H2O, whereas in CDCI3 no preferred conformation can be detected. cyclo(-D-Asp1-Asp2-Gly3-Ahd4-Ahd5-Gly6-) (C3) clearly exhibits two different conformations with a shifted beta,beta-turn motif in CDCI3 and SDS/H2O solutions. The conformational change could be reproduced in a restraint-free MD simulation using the biphasic membrane mimetic CCl4/H2O. Our results give clear evidence that membrane interactions may not only lead to structure inductions, but can also induce major conformational changes in compounds already exhibiting a defined structure in isotropic solution.
- Published
- 1999
- Full Text
- View/download PDF
27. Formation of oligonucleotide-PNA-chimeras by template-directed ligation.
- Author
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Koppitz M, Nielsen PE, and Orgel LE
- Subjects
- Directed Molecular Evolution, Electrophoresis, Polyacrylamide Gel, Templates, Genetic, DNA chemistry, Evolution, Molecular, Nucleic Acids chemistry, Oligodeoxyribonucleotides chemistry, Oligonucleotides chemistry, Peptides chemistry
- Abstract
DNA sequences have previously been reported to act as templates for the synthesis of PNA, and vice versa. A continuous evolutionary transition from an informational replicating system based on one polymer to a system based on the other would be facilitated if it were possible to form chimeras, that is molecules that contain monomers of both types. Here we show that ligation to form chimeras proceeds efficiently both on PNA and on DNA templates. The efficiency of ligation is primarily determined by the number of backbone bonds at the ligation site and the relative orientation of template and substrate strands. The most efficient reactions result in the formation of chimeras with ligation junctions resembling the structures of the backbones of PNA and DNA and with antiparallel alignment of both components of the chimera with the template, that is, ligations involving formation of 3'-phosphoramidate and 5'-ester bonds. However, double helices involving PNA are stable both with antiparallel and parallel orientation of the two strands. Ligation on PNA but not on DNA templates is, therefore, sometimes possible on templates with reversed orientation. The relevance of these findings to discussions of possible transitions between genetic systems is discussed.
- Published
- 1998
- Full Text
- View/download PDF
28. A simple procedure for constructing 5'-amino-terminated oligodeoxynucleotides in aqueous solution.
- Author
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Bruick RK, Koppitz M, Joyce GF, and Orgel LE
- Subjects
- Base Sequence, DNA chemical synthesis, DNA Ligases, Electrophoresis, Polyacrylamide Gel, Ethyldimethylaminopropyl Carbodiimide, Indicators and Reagents, Oligodeoxyribonucleotides chemistry, Solutions, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Templates, Genetic, Water, Oligodeoxyribonucleotides chemical synthesis, Thymidine analogs & derivatives
- Abstract
A rapid method for the synthesis of oligodeoxynucleotides (ODNs) terminated by 5'-amino-5'-deoxythymidine is described. A 3'-phosphorylated ODN (the donor) is incubated in aqueous solution with 5'-amino- 5'-deoxythymidine in the presence of N-(3-dimethylaminopropyl)-N'-ethylcarbodiimide hydrochloride (EDC), extending the donor by one residue via a phosphoramidate bond. Template- directed ligation of the extended donor and an acceptor ODN, followed by acid hydrolysis, yields the acceptor ODN extended by a single 5'-amino-5'-deoxythymidine residue at its 5'terminus.
- Published
- 1997
- Full Text
- View/download PDF
29. Inhibition of the interaction of urokinase-type plasminogen activator (uPA) with its receptor (uPAR) by synthetic peptides.
- Author
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Bürgle M, Koppitz M, Riemer C, Kessler H, König B, Weidle UH, Kellermann J, Lottspeich F, Graeff H, Schmitt M, Goretzki L, Reuning U, Wilhelm O, and Magdolen V
- Subjects
- Amino Acid Sequence, Chromatography, High Pressure Liquid, Flow Cytometry, Humans, Ligands, Mass Spectrometry, Molecular Sequence Data, Peptides chemical synthesis, Peptides isolation & purification, Receptors, Cell Surface metabolism, Receptors, Urokinase Plasminogen Activator, Tumor Cells, Cultured, Urokinase-Type Plasminogen Activator metabolism, Peptides pharmacology, Receptors, Cell Surface antagonists & inhibitors, Urokinase-Type Plasminogen Activator antagonists & inhibitors
- Abstract
Focusing of the serine protease urokinase-type plasminogen activator (uPA) to the cell surface via interaction with its specific receptor (uPAR, CD87) is an important step for tumor cell invasion and metastasis. The ability of a synthetic peptide derived from the uPAR-binding region of uPA (comprising amino acids 16-32 of uPA; uPA(16-32)) to inhibit binding of fluorescently labeled uPA to uPAR on human promyeloid U937 cells was assessed by quantitative flow cytofluorometric analysis (FACS) and compared to the inhibitory capacities of other synthetic peptides known to interfere with uPA/uPAR-interaction. An about 3000-fold molar excess of uPA(16-32) resulted in 50% inhibition of pro-uPA binding to cell surface-associated uPAR. Using a solid-phase uPA-ligand binding assay employing recombinant soluble uPAR coated to microtiter plates, the minimal binding region of wild-type uPA was determined. The linear peptide uPA(19-31) and its more stable disulfide-bridged cyclic form (cyclo(19,31)uPA(19-31)) displayed uPAR-binding activity whereas other peptides such as uPA(18-30), uPA(20-32) or uPA(20-30) did not react with uPAR. Cyclic peptide derivatives of cyclo(19,31)uPA(19-31) in which certain amino acids were deleted and/or replaced by other amino acids as well as uPAR-derived wild-type peptides did also not inhibit uPA/uPAR-interaction. Therefore, the present investigations identified cyclo(19,31)uPA(19-31) as a potential lead structure for the development of uPA-peptide analogues to block uPA/uPAR-interaction.
- Published
- 1997
- Full Text
- View/download PDF
30. Systematic mutational analysis of the receptor-binding region of the human urokinase-type plasminogen activator.
- Author
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Magdolen V, Rettenberger P, Koppitz M, Goretzki L, Kessler H, Weidle UH, König B, Graeff H, Schmitt M, and Wilhelm O
- Subjects
- Amino Acid Sequence, Animals, Binding Sites genetics, Escherichia coli genetics, Humans, Molecular Sequence Data, Mutagenesis, Site-Directed, Papio, Peptide Fragments chemistry, Peptide Fragments genetics, Peptide Fragments metabolism, Point Mutation, Protein Structure, Secondary, Receptors, Urokinase Plasminogen Activator, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Saccharomyces cerevisiae genetics, Sequence Deletion, Urokinase-Type Plasminogen Activator chemistry, Receptors, Cell Surface metabolism, Urokinase-Type Plasminogen Activator genetics, Urokinase-Type Plasminogen Activator metabolism
- Abstract
The amino-terminal fragment of human uPA (ATF; amino acids 1-135), which contains the binding site for the uPA receptor (uPAR, CD87) was expressed in the yeast Saccharomyces cerevisiae. Recombinant yeast ATF, modified and extended by an amino-terminal in-frame insertion of a His6 tract, was purified from total protein extracts by nickel chelate affinity chromatography and shown to be functionally active since it efficiently competes with uPA for binding to cell-surface-associated uPAR. The ATF expression plasmid served as a template for the construction of a series of site-directed mutants in order to define those amino acids that are important for binding to uPAR. All mutant ATF proteins but one (deletion of Ser26) were expressed in a stable form (about 20-30 ng/mg total protein) and the binding capacity of each mutant was tested by a uPA-ligand binding assay employing recombinant uPAR immobilized to a microtiter plate. Each of the 11 amino acids of loop B of the binding region of uPA (amino acids 20-30) were individually substituted with alanine. Lys23, Tyr24, Phe25, IIe28, and Trp30 were important determinants for uPAR binding. A systematic alanine scan was also performed with chemically synthesized linear peptides spanning amino acids 14-32 of ATF. Comparable results to those with the yeast ATF mutants were obtained. In a different set of experiments, those amino acids of the uPAR-binding region of uPA that are only conserved between man and baboon but not in other species were altered: whereas substitution of Thr18 by alanine or Asn32 by serine had hardly any effect, replacement of Asn22 by tyrosine and Trp30 by arginine (both positions are strictly conserved in other mammals) led to ATF variants incapable of interacting with human uPAR. Deletion of either Val20, Ser21, Lys23, His29 or Val20 plus Ser21, respectively, also generated non-reactive ATF mutants. Finally, Lys23 in ATF was substituted with certain amino acids: whereas the replacement of Lys23 by alanine, histidine or glutamine generated ATF variants with moderate uPAR-binding activity, the introduction of a negatively charged amino acid (exchange of Lys23 by glutamic acid) completely abolished uPAR-binding activity. The results presented for the ATF mutants and uPA-derived peptides may provide clues necessary to establish the nature of the physical interaction of uPA with its receptor and may help to develop uPA-derived peptide analogues as potential therapeutic agents to block tumor cell-associated uPA/uPAR interaction.
- Published
- 1996
- Full Text
- View/download PDF
31. A competitive chromogenic assay to study the functional interaction of urokinase-type plasminogen activator with its receptor.
- Author
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Rettenberger P, Wilhelm O, Oi H, Weidle UH, Goretzki L, Koppitz M, Lottspeich F, König B, Pessara U, and Kramer MD
- Subjects
- Amino Acid Sequence, Animals, Antibodies, Monoclonal, CHO Cells, Chromogenic Compounds, Cricetinae, Escherichia coli metabolism, Humans, Molecular Sequence Data, Plasmids genetics, Receptors, Cell Surface antagonists & inhibitors, Receptors, Cell Surface chemistry, Receptors, Urokinase Plasminogen Activator, Recombinant Proteins chemistry, Recombinant Proteins metabolism, Recombinant Proteins pharmacology, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae metabolism, Urokinase-Type Plasminogen Activator chemistry, Urokinase-Type Plasminogen Activator pharmacology, Receptors, Cell Surface metabolism, Urokinase-Type Plasminogen Activator metabolism
- Abstract
Urokinase-type plasminogen activator (uPA) converts plasminogen to plasmin which degrades various extracellular matrix components. uPA is focused to the cell surface via binding to a specific receptor (uPAR, also termed CD87). uPAR-bound uPA mediates pericellular proteolysis in a variety of biological processes, e.g. cell migration, tissue remodeling and tumor invasion. We have developed a competitive microtiter plate-based chromogenic assay which allows the analysis of uPA/uPAR interaction. The plates are coated with recombinant uPAR expressed in Chinese hamster ovary (CHO) cells. Proteolytically active uPA (HMW-uPA) is added to the microtiter plate-attached uPAR. The amount of receptor-bound uPA is then determined indirectly via addition of plasminogen, which is activated to plasmin, followed by cleavage of a plasmin-specific chromogenic substrate. Substances interfering with binding of HMW-uPA to uPAR diminish the generation of plasmin, as indicated by a reduction of cleaved chromogenic substrate. This assay was used to analyze the inhibitory capacity of a variety of proteins and peptides, respectively, on the uPA/uPAR interaction: i) uPAR and uPAR-variants expressed in CHO cells, yeast or E. coli, ii) the aminoterminal fragment (ATF) of human uPA or yeast recombinant pro-uPA, iii) synthetic peptides derived from the sequence of the uPAR-binding region of uPA, and iv) antibodies directed against uPAR. This assay may be helpful in identifying uPA and uPAR analogues or antagonists which efficiently block uPA/uPAR interaction.
- Published
- 1995
- Full Text
- View/download PDF
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