Search

Epigenetic silencing is critical for maintaining germline stem cells in Drosophila ovaries. However, it remains unclear how the differentiation factor, Bag-of-marbles (Bam), counteracts transcriptional silencing. We found that the trimethylation of lysine 36 on histone H3 (H3K36me3), a modification that is associated with gene activation, is enhanced in Bam-expressing cells. H3K36me3 levels were reduced in flies deficient in Bam. Inactivation of the Set2 methyltransferase, which confers the H3K36me3 modification, in germline cells markedly reduced H3K36me3 and impaired differentiation. Genetic analyses revealed that Set2 acts downstream of Bam. Furthermore, orb expression, which is required for germ cell differentiation, was activated by Set2, probably through direct H3K36me3 modification of the orb locus. Our data indicate that H3K36me3-mediated epigenetic regulation is activated by bam, and that this modification facilitates germ cell differentiation, probably through transcriptional activation. This work provides a novel link between Bam and epigenetic transcriptional control.

We study phase imprinting on Bose–Einstein condensates (BECs) with the fast-forward scaling theory revealing a nontrivial scaling property in quantum dynamics. We introduce a wave packet with uniform momentum density (WPUM) which has peculiar properties but is short-lived. The fast-forward scaling theory is applied to derive the driving potential for creation of the WPUMs in a predetermined time. Fast manipulation is essential for the creation of WPUMs because of the instability of the state. We also study loading of a BEC into a predetermined Bloch state in the lowest band from the ground state of a periodic potential. Controlled linear potential is not sufficient for creation of the Bloch state with large wavenumber because the change in the amplitude of the order parameter is not negligible. We derive the exact driving potential for creation of predetermined Bloch states using the obtained theory.

A protocol is proposed for the rapid coherent loading of a Bose-Einstein condensate into the ground state of an optical lattice, without residual excitation associated with the breakdown of adiabaticity. The driving potential required to assist the rapid loading is derived using the fast-forward technique, and generates the ground state in any desired short time. We propose an experimentally feasible loading scheme using a bichromatic lattice potential, which approximates the fast-forward driving potential with high fidelity. [ABSTRACT FROM AUTHOR]

The fast-forward (FF) scheme proposed by Masuda and Nakamura [Proc. R. Soc. A 466, 1135 (2010)] in the context of conservative quantum dynamics can reproduce a quasistatic dynamics in an arbitrarily short time. We apply the FF scheme to the classical stochastic Carnot-like heat engine which is driven by a Brownian particle coupled with a time-dependent harmonic potential and working between the high- (Th) and low- (Tc) temperature heat reservoirs. Concentrating on the underdamped case where momentum degree of freedom is included, we find the explicit expressions for the FF protocols necessary to accelerate both the isothermal and thermally adiabatic processes and obtain the reversible and irreversible works. The irreversible work is shown to consist of two terms with one proportional to and the other inversely proportional to the friction coefficient. The optimal value of efficiency at the maximum power of this engine is found to be ..., respectively, in the cases of strong and weak dissipation. The result is justified for a wide family of time-scaling functions, making the FF protocols very flexible. We also revealed that the accelerated full cycle of the Carnot-like stochastic heat engine cannot be conceivable within the framework of the overdamped case, and the power and efficiency can be evaluated only when the momentum degree of freedom is taken into consideration. [ABSTRACT FROM AUTHOR]

We consider the sine-Gordon equation on metric graphs with simple topologies and derive vertex boundary conditions from the fundamental conservation laws together with successive space-derivatives of sine-Gordon equation. We analytically obtain traveling-wave solutions in the form of standard sine-Gordon solitons such as kinks and antikinks for star and tree graphs. We show that for this case the sine-Gordon equation becomes completely integrable just as in case of a simple 1D chain. This simple analysis provides a cornerstone for the numerical solution of the general case, including a quantification of the vertex scattering. Applications of the obtained results to Josephson junction networks and DNA double helix are discussed. [ABSTRACT FROM AUTHOR]

With use of a variational principle, we investigate a role of breathing width degree of freedom in the effective theory of interacting vortices in a trapped single-component Bose–Einstein condensates in two dimensions, under strong repulsive cubic nonlinearity. For the trial function, we choose a product of two vortex functions, assuming a pair interaction, and employ the amplitude form of each vortex function in the Padé approximation, which accommodates a hallmark of the vortex core. We obtain the Lagrange equation for the interacting vortex-core coordinates coupled with the time-derivative of width and also its Hamilton formalism by having recourse to a non-standard Poisson bracket. By solving the Hamilton equation, we find rapid radial breathing oscillations superposed on the slower rotational motion of vortex cores, consistent with numerical solutions of the Gross–Pitaevskii equation. In higher-energy states of two vortex systems, the breathing width degree of freedom plays the role of a kicking in the kicked rotator, and generates chaos with a structure of sea-urchin needles. The by-products of the present variational approach include: (1) the charge-dependent logarithmic inter-vortex interaction multiplied with a pre-factor, which depends on the scalar product of a pair of core-position vectors; (2) the charge-independent short-range repulsive inter-vortex interaction and spring force. [ABSTRACT FROM AUTHOR]

With use of the scheme of fast forward which realizes quasistatic or adiabatic dynamics in shortened timescale, we investigate a thermally isolated ideal quantum gas confined in a rapidly dilating one-dimensional (1D) cavity with the time-dependent size L=L(t). In the fast-forward variants of equation of states, i.e., Bernoulli's formula and Poisson's adiabatic equation, the force or 1D analog of pressure can be expressed as a function of the velocity (˙L) and acceleration (¨L) of L besides rapidly changing state variables like effective temperature (T) and L itself. The force is now a sum of nonadiabatic (NAD) and adiabatic contributions with the former caused by particles moving synchronously with kinetics of L and the latter by ideal bulk particles insensitive to such a kinetics. The ratio of NAD and adiabatic contributions does not depend on the particle number (N) in the case of the soft-wall confinement, whereas such a ratio is controllable in the case of hard-wall confinement. We also reveal the condition when the NAD contribution overwhelms the adiabatic one and thoroughly changes the standard form of the equilibrium equation of states. [ABSTRACT FROM AUTHOR]