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Soybean (Glycine max [L.] Merr.) was domesticated from the wild annual progenitor Glycine soja (Sieb. & Zucc.) in the temperate zone of China. Through domestication and improvement, soybean agronomic traits and adaptability have been significantly altered. In this review, we discuss the ways in which genetic changes were selected in soybean to enable adaptation to diverse environmental conditions. Challenges and strategies are discussed for breeding new elite varieties from existing elite varieties. Finally, we propose a strategy to break the current genetic bottleneck in soybean breeding: de novo domestication, which utilizes the excellent genetic resources available in wild soybean and provides a feasible strategy for accelerating the soybean improvement process. Overall, this review serves as a guide to understand the genetic factors that have driven soybean domestication and improvement over thousands of years, promoting future generation of soybean cultivars that are optimized for high yield under stressful environmental conditions. [ABSTRACT FROM AUTHOR]

Soybean (Glycine max) is a typical short‐day plant, but has been widely cultivated in high‐latitude long‐day (LD) regions because of the development of early‐maturing genotypes which are photoperiod‐insensitive. However, some early‐maturing varieties exhibit significant responses to maturity under different daylengths but not for flowering, depicting an evident photoperiodic after‐effect, a poorly understood mechanism. In this study, we investigated the postflowering responses of 11 early‐maturing soybean varieties to various preflowering photoperiodic treatments. We confirmed that preflowering SD conditions greatly promoted maturity and other postflowering developmental stages. Soybean homologs of FLOWERING LOCUS T (FT), including GmFT2a, GmFT3a, GmFT3b and GmFT5a, were highly accumulated in leaves under preflowering SD treatment. More importantly, they maintained a high expression level after flowering even under LD conditions. E1 RNAi and GmFT2a overexpression lines showed extremely early maturity regardless of preflowering SD and LD treatments due to constitutively high levels of floral‐promoting GmFT homolog expression throughout their life cycle. Collectively, our data indicate that high and stable expression of floral‐promoting GmFT homologs play key roles in the maintenance of photoperiodic induction to promote postflowering reproductive development, which confers early‐maturing varieties with appropriate vegetative growth and shortened reproductive growth periods for adaptation to high latitudes. Summary statement: The photoperiodic after‐effect of early‐maturing soybean varieties is caused by the maintenance of high‐level expression of floral‐promoting GmFTs. This phenomenon indicates that maturity exhibits a stronger photoperiod sensitivity than flowering time, which ensures an appropriate vegetative growth and shortened reproductive growth of early‐maturing soybean varieties to adapt to high latitudes with significant changes in photoperiods from long day to short day in the growing season. [ABSTRACT FROM AUTHOR]

Soybean [Glycine max (L.) Merr.] is a short-day (SD) plant that is sensitive to photoperiod, which influences flowering, maturity, and even adaptation. TEOSINTE-BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTOR (TCP) transcription factors have been shown to regulate photoperiodic flowering. However, the roles of TCPs in SD plants such as soybean, rice, and maize remain largely unknown. In this study, we cloned the GmTCP40 gene from soybean and investigated its expression pattern and function. Compared with wild-type (WT) plants, GmTCP40-overexpression plants flowered earlier under long-day (LD) conditions but not under SD conditions. Consistent with this, the overexpression lines showed upregulation of the flowering-related genes GmFT2a, GmFT2b, GmFT5a, GmFT6, GmAP1a, GmAP1b, GmAP1c, GmSOC1a, GmSOC1b, GmFULa, and GmAG under LD conditions. Further investigation revealed that GmTCP40 binds to the GmAP1a promoter and promotes its expression. Analysis of the GmTCP40 haplotypes and phenotypes of soybean accessions demonstrated that one GmTCP40 haplotype (Hap6) may contribute to delayed flowering at low latitudes. Taken together, our findings provide preliminary insights into the regulation of flowering time by GmTCP40 while laying a foundation for future research on other members of the GmTCP family and for efforts to enhance soybean adaptability. [ABSTRACT FROM AUTHOR]

Seed size is a critical agronomic trait that influences the yield and appearance quality of soybeans, making it a primary breeding objective with significant economic value. While the molecular mechanisms that regulate soybean seed size remain largely unknown, several functional molecular targets have been applied in breeding to create larger grain size materials. In this study, we utilized the CRISPR/Cas9 system to induce the targeted mutagenesis of GmEOD1, which encodes the E3 ubiquitin ligase. The resulting homozygous soybean mutant of GmEOD1 exhibited larger seed size and 100-seed weight, with no significant change in the average seed weight per plant. The sum of crude protein and oil content increased significantly in mutants while fatty acid composition remained unchanged. We identified six haplotypes among 156 soybean cultivars, with Hap1 and Hap2 representing the majority of cultivars with relatively higher 100-seed weight, suggesting that sequence variations of GmEOD1 may correlate with seed weight. Transcriptomic analysis across five stages of seed development revealed that stages one–three mainly focused on cell cycle, growth, wall synthesis and modification, photosynthesis, and sugar metabolism; promoting cell growth, reproduction, and carbon accumulation; and providing key intermediates for substance synthesis. Stages four–five focused on polysaccharide catabolism, xylan metabolism, and nutrient pool activity, promoting the accumulation of dry matter, such as sugars, proteins, and lipids in seeds. Weighted gene co-expression network analysis (WGCNA) of modules related to seed size revealed 13 hub genes involved in seed development regulation. This study provides a valuable theoretical basis and excellent opportunities for genetic editing of germplasm cells with subsequent molecular soybean seed size breeding, facilitating easier seed selection to improve soybean quality. [ABSTRACT FROM AUTHOR]

Flowering time and photoperiod sensitivity are fundamental traits that determine soybean adaptation to a given region or a wide range of geographic environments. The General Regulatory Factors (GRFs), also known as 14-3-3 family, are involved in protein–protein interactions in a phosphorylation-dependent manner, thus regulating ubiquitous biological processes, such as photoperiodic flowering, plant immunity and stress response. In this study, 20 soybean GmSGF14 genes were identified and divided into two categories according to phylogenetic relationships and structural characteristics. Real-time quantitative PCR analysis revealed that GmSGF14g, GmSGF14i, GmSGF14j, GmSGF14k, GmSGF14m and GmSGF14s were highly expressed in all tissues compared to other GmSGF14 genes. In addition, we found that the transcript levels of GmSGF14 family genes in leaves varied significantly under different photoperiodic conditions, indicating that their expression responds to photoperiod. To explore the role of GmSGF14 in the regulation of soybean flowering, the geographical distribution of major haplotypes and their association with flowering time in six environments among 207 soybean germplasms were studied. Haplotype analysis confirmed that the GmSGF14mH4 harboring a frameshift mutation in the 14-3-3 domain was associated with later flowering. Geographical distribution analysis demonstrated that the haplotypes related to early flowering were frequently found in high-latitude regions, while the haplotypes associated with late flowering were mostly distributed in low-latitude regions of China. Taken together, our results reveal that the GmSGF14 family genes play essential roles in photoperiodic flowering and geographical adaptation of soybean, providing theoretical support for further exploring the function of specific genes in this family and varietal improvement for wide adaptability. [ABSTRACT FROM AUTHOR]

Cold stress is a major factor influencing the geographical distribution of soybean growth and causes immense losses in productivity. Understanding the molecular mechanisms that the soybean has undergone to survive cold temperatures will have immense value in improving soybean cold tolerance. This review focuses on the molecular mechanisms involved in soybean response to cold. We summarized the recent studies on soybean cold-tolerant quantitative trait loci (QTLs), transcription factors, associated cold-regulated (COR) genes, and the regulatory pathways in response to cold stress. Cold-tolerant QTLs were found to be overlapped with the genomic region of maturity loci of E1, E3, E4, pubescence color locus of T, stem growth habit gene locus of Dt1, and leaf shape locus of Ln, indicating that pleiotropic loci may control multiple traits, including cold tolerance. The C-repeat responsive element binding factors (CBFs) are evolutionarily conserved across species. The expression of most GmDREB1s was upregulated by cold stress and overexpression of GmDREB1B;1 in soybean protoplast, and transgenic Arabidopsis plants can increase the expression of genes with the DRE core motif in their promoter regions under cold stress. Other soybean cold-responsive regulators, such as GmMYBJ1, GmNEK1, GmZF1, GmbZIP, GmTCF1a, SCOF-1 and so on, enhance cold tolerance by regulating the expression of COR genes in transgenic Arabidopsis. CBF-dependent and CBF-independent pathways are cross-talking and work together to activate cold stress gene expression. Even though it requires further dissection for precise understanding, the function of soybean cold-responsive transcription factors and associated COR genes studied in Arabidopsis shed light on the molecular mechanism of cold responses in soybeans and other crops. Furthermore, the findings may also provide practical applications for breeding cold-tolerant soybean varieties in high-latitude and high-altitude regions. [ABSTRACT FROM AUTHOR]

Pseudo-response regulator (PRR) family members serve as key components of the core clock of the circadian clock, and play important roles in photoperiodic flowering, stress tolerance, growth, and the development of plants. In this study, 14 soybean PRR genes were identified, and classified into three groups according to phylogenetic analysis and structural characteristics. Real-time quantitative PCR analysis revealed that 13 GmPRRs exhibited obvious rhythmic expression under long-day (LD) and short-day (SD) conditions, and the expression of 12 GmPRRs was higher under LD in leaves. To evaluate the effects of natural variations in GmPRR alleles on soybean adaptation, we examined the sequences of GmPRRs among 207 varieties collected across China and the US, investigated the flowering phenotypes in six environments, and analyzed the geographical distributions of the major haplotypes. The results showed that a majority of non-synonymous mutations in the coding region were associated with flowering time, and we found that the nonsense mutations resulting in deletion of the CCT domain were related to early flowering. Haplotype analysis demonstrated that the haplotypes associated with early flowering were mostly distributed in Northeast China, while the haplotypes associated with late flowering were mostly cultivated in the lower latitudes of China. Our study of PRR family genes in soybean provides not only an important guide for characterizing the circadian clock-controlled flowering pathway but also a theoretical basis and opportunities to breed varieties with adaptation to specific regions and farming systems. [ABSTRACT FROM AUTHOR]

CONSTANS (CO) plays a critical role in the photoperiodic flowering pathway. However, the function of soybean CO orthologs and the molecular mechanisms in regulating flowering remain largely unknown. This study characterized the natural variations in CO family genes and their association with flowering time and maturity in soybeans. A total of 21 soybean CO family genes (GmCOL s) were cloned and sequenced in 128 varieties covering 14 known maturity groups (MG 0000-MG X from earliest to latest maturity). Regarding the whole genomic region involving these genes, GmCOL1 , GmCOL3 , GmCOL8 , GmCOL9 , GmCOL10 , and GmCOL13 were conserved, and the remaining 15 genes showed genetic variation that was brought about by mutation, namely, all single-nucleotide polymorphisms (SNPs) and insertions-deletions (InDels). In addition, a few genes showed some strong linkage disequilibrium. Point mutations were found in 15 GmCOL genes, which can lead to changes in the potential protein structure. Early flowering and maturation were related to eight genes (GmCOL1 / 3 / 4 / 8 / 13 / 15 / 16 / 19). For flowering and maturation, 11 genes (GmCOL2 / 5 / 6 / 14 / 20 / 22 / 23 / 24 / 25 / 26 / 28) expressed divergent physiognomy. Haplotype analysis indicated that the haplotypes of GmCOL5-Hap2 , GmCOL13-Hap2/3 , and GmCOL28-Hap2 were associated with flowering dates and soybean maturity. This study helps address the role of GmCOL family genes in adapting to diverse environments, particularly when it is necessary to regulate soybean flowering dates and maturity. [ABSTRACT FROM AUTHOR]

Soybean (Glycine max), a typical short‐day plant (SDP) domesticated in temperate regions, has expanded to high latitudes where daylengths are long from soybean emergence to bloom, but rapidly decrease from seed filling to maturity. Cotyledons are well known as the major storage organs in seeds, but it is unclear whether developing cotyledons store flowering substances at filling stage in SD for upcoming seedlings, or instead respond to photoperiod for floral induction after emergence of matured seeds in long‐day (LD). Here, we report that cotyledons accelerate flowering of early‐maturing varieties not resulting from stored floral stimuli but by perceiving photoperiod after emergence. We found that light signal is indispensable to activate cotyledons for floral induction, and flowering promoting gene GmFT2a is required for cotyledon‐dependent floral induction via upregulation of floral identity gene GmAP1. Interestingly, cotyledons are competent to support the entire life cycle of a cotyledon‐only plant to produce seeds, underlying a new photoperiod study system in soybean and other dicots. Taken together, these results demonstrate a substantial role for cotyledons in flowering process, whereby we propose a 'cotyledon‐based self‐reliance' model highlighting floral induction from emergence as a key ecological adaptation for rapid flowering of SDPs grown in LD environments at high latitudes. The cotyledons induce soybean flowering by expressing flowering promoting gene GmFT2a after perceiving light signals at seedling stage. The cotyledon‐dependent floral induction accelerates the flowering of early‐maturing varieties in long‐day and facilitate them adapting to high latitudes. [ABSTRACT FROM AUTHOR]

Abstract Background Safety assessment of genetically modified (GM) food, with regard to allergenic potential of transgene-encoded xenoproteins, typically involves several different methods, evaluation by digestibility being one thereof. However, there are still debates about whether the allergenicity of food allergens is related to their resistance to digestion by the gastric fluid. The disagreements may in part stem from classification of allergens only by their sources, which we believe is inadequate, and the difficulties in achieving identical experimental conditions for studying digestion by simulated gastric fluid (SGF) so that results can be compared. Here, we reclassify allergenic food allergens into alimentary canal-sensitized (ACS) and non-alimentary canal-sensitized (NACS) allergens and use a computational model that simulates gastric fluid digestion to analyze the digestibilities of these two types. Results The model presented in this paper is as effective as SGF digestion experiments, but more stable and reproducible. On the basis of this model, food allergens are satisfactorily classified as ACS and NACS types by their pathways for sensitization; the former are relatively resistant to gastric fluid digestion while the later are relatively labile. Conclusion The results suggest that it is better to classify allergens into ACS and NACS types when understanding the relationship between their digestibility and allergenicity and the digestibility of a target foreign protein is a parameter for evaluating its allergenicity during safety assessments of GM food.

Summary: Flowering time is a critical determinant of the geographic distribution and regional adaptability of soybean (Glycine max) and is strongly regulated by photoperiod and temperature. In this study, quantitative trait locus (QTL) mapping and subsequent candidate gene analysis revealed that GmPRR37, encoding a pseudo‐response regulator protein, is responsible for the major QTL qFT12‐2, which was identified from a population of 308 recombinant inbred lines (RILs) derived from a cross between a very late‐flowering soybean cultivar, 'Zigongdongdou (ZGDD)', and an extremely early‐flowering cultivar, 'Heihe27 (HH27)', in multiple environments. Comparative analysis of parental sequencing data confirmed that HH27 contains a non‐sense mutation that causes the loss of the CCT domain in the GmPRR37 protein. CRISPR/Cas9‐induced Gmprr37‐ZGDD mutants in soybean exhibited early flowering under natural long‐day (NLD) conditions. Overexpression of GmPRR37 significantly delayed the flowering of transgenic soybean plants compared with wild‐type under long photoperiod conditions. In addition, both the knockout and overexpression of GmPRR37 in soybean showed no significant phenotypic alterations in flowering time under short‐day (SD) conditions. Furthermore, GmPRR37 down‐regulated the expression of the flowering‐promoting FT homologues GmFT2a and GmFT5a, and up‐regulated flowering‐inhibiting FT homologue GmFT1a expression under long‐day (LD) conditions. We analysed haplotypes of GmPRR37 among 180 cultivars collected across China and found natural Gmprr37 mutants flower earlier and enable soybean to be cultivated at higher latitudes. This study demonstrates that GmPRR37 controls soybean photoperiodic flowering and provides opportunities to breed optimized cultivars with adaptation to specific regions and farming systems. [ABSTRACT FROM AUTHOR]

Appropriate flowering and maturity time are important for soybean production. Four maturity genes E1, E2, E3 and E4 have been molecularly identified and found to play major roles in the control of flowering and maturity of soybean. Here, to further investigate the effect of different allele combinations of E1-E4, we performed Kompetitive Allele Specific PCR (KASP) assays based on single nucleotide polymorphisms (SNPs) at these four E loci, and genotyped E1-E4 genes across 308 Chinese cultivars with a wide range of maturity groups. In total, twenty-one allele combinations for E1-E4 genes were identified across these Chinese cultivars. Various combinations of mutations at four E loci gave rise to the diversity of flowering and maturity time, which were associated with the adaptation of soybean cultivars to diverse geographic regions and farming systems. In particular, the cultivars with mutations at all four E loci reached flowering and maturity very early, and adapted to high-latitude cold regions. The allele combinations e1-as/e2-ns/e3-tr/E4, E1/e2-ns/E3/E4 and E1/E2/E3/E4 played important roles in the Northeast China, Huang-Huai-Hai (HHH) Rivers Valley and South China regions, respectively. Notably, E1 and E2, especially E2, affected flowering and maturity time of soybean significantly. Our study will be beneficial for germplasm evaluation, cultivar improvement and regionalization of cultivation in soybean production. [ABSTRACT FROM AUTHOR]

Day length has an important influence on flowering and growth habit in many plant species. In crops such as soybean, photoperiod sensitivity determines the geographical range over which a given cultivar can grow and flower. The soybean genome contains ~10 genes homologous to FT, a central regulator of flowering from Arabidopsis thaliana. However, the precise roles of these soybean FTs are not clearly. Here we show that one such gene, GmFT2b, promotes flowering under long‐days (LDs). Overexpression of GmFT2b upregulates expression of flowering‐related genes which are important in regulating flowering time. We propose a 'weight' model for soybean flowering under short‐day (SD) and LD conditions. Furthermore, we examine GmFT2b sequences in 195 soybean cultivars, as well as flowering phenotypes, geographical distributions and maturity groups. We found that Hap3, a major GmFT2b haplotype, is associated with significantly earlier flowering at higher latitudes. We anticipate our assay to provide important resources for the genetic improvement of soybean, including new germplasm for soybean breeding, and also increase our understanding of functional diversity in the soybean FT gene family. In an effort to understand the molecular genetic basis of flowering time in soybean, we have isolated and characterized GmFT2b, a soybean FT gene homolog. We used overexpression and CRISPR/Cas9‐induced targeted gene mutations to show that GmFT2b regulates flowering in soybean, but only under long days. We also sequenced this gene from 195 soybean cultivars in different maturity groups (MGs). Our analysis showed that one GmFT2b haplotype, Hap3, is found only in early‐maturing cultivars in MGs 0–2, and correlates with their ability to flower in environments located at high latitudes in northeastern China. [ABSTRACT FROM AUTHOR]

Summary: Flowering time is a key agronomic trait that directly influences the successful adaptation of soybean (Glycine max) to diverse latitudes and farming systems. GmFT2a and GmFT5a have been extensively identified as flowering activators and integrators in soybean. Here, we identified two quantitative trait loci (QTLs) regions harbouring GmFT2a and GmFT5a, respectively, associated with different genetic effects on flowering under different photoperiods. We analysed the flowering time of transgenic plants overexpressing GmFT2a or GmFT5a, ft2a mutants, ft5a mutants and ft2aft5a double mutants under long‐day (LD) and short‐day (SD) conditions. We confirmed that GmFT2a and GmFT5a are not redundant, they collectively regulate flowering time, and the effect of GmFT2a is more prominent than that of GmFT5a under SD conditions whereas GmFT5a has more significant effects than GmFT2a under LD conditions. GmFT5a, not GmFT2a, was essential for soybean to adapt to high latitude regions. The ft2aft5a double mutants showed late flowering by about 31.3 days under SD conditions and produced significantly increased numbers of pods and seeds per plant compared to the wild type. We speculate that these mutants may have enormous yield potential for the tropics. In addition, we examined the sequences of these two loci in 202 soybean accessions and investigated the flowering phenotypes, geographical distributions and maturity groups within major haplotypes. These results will contribute to soybean breeding and regional adaptability. [ABSTRACT FROM AUTHOR]

Soybean [Glycine max (L.) Merr.] is a photoperiod‐sensitive crop, and the photoperiod response determines the ecological adaptability of soybean genotypes. Critical photoperiod is the dividing daylength between photoperiod sensitivity and photoperiod insensitivity phases and is one of the most important indicators of photoperiod sensitivity. However, the appropriate experimental treatment and calculation method for quantifying the critical photoperiod are poorly documented. To characterize the photoperiod response of genotypes, 72 soybean genotypes belonging to 14 different maturity groups (MG 0000–MG X) were included, and five photoperiod treatments of 12‐, 14‐, 16‐, 18‐, and 20‐h daylength were conducted in the consecutive 3 yr from 2015 to 2017. The piecewise linear regression model based on the median function was used to determine the critical photoperiod. The results showed that the photoperiodic responses of soybean genotypes were significantly different among various MGs. The critical photoperiod of MG 0000 was 16.4 h d−1, whereas those of MG 000 to MG I, MG II to MG III, MG IV, MG V to MG VIII, and MG IX to MG X were 15.7 to 15.8, 15.3, 14.7, 13.4 to 13.7, and ≤12 h d−1, respectively. A significant negative linear relationship between the critical photoperiod and relative maturity group (RMG) was found. It is of particular importance for the quantification of soybean photoperiod response and precise prediction of the developmental process. More importantly, the critical photoperiod obtained in this study will help breeders to synchronize the flowering time of parents from distant geographic origins and break the reproductive isolation among different ecotype cultivars. [ABSTRACT FROM AUTHOR]

The maturity group (MG) system is widely used to group soybean [Glycine max (L.) Merr.] varieties based on their growth periods and photothermal responses. However, there is still no universal standard or quantifiable methodology for MG classification. In this study, phenological traits of 107 Chinese, 4 Far East Russian representative soybean varieties, and 113 North American reference varieties covering 13 MGs were evaluated at eight locations (ranging from 30 to 50° N) in four ecoregions of China for two consecutive years (2014 and 2015). Relative maturity groups (RMGs) were attributed to all the varieties based on the linear regression models. To decimalize the RMG values of the early‐maturing varieties belonging to MGs below 0, negative values were defined for MGs 00, 000, and 0000. The additive main effects and multiplicative interaction (AMMI) model was used to screen 185 standard candidate varieties for MGs 0000 to VIII. This study provided a systematic and quantifiable methodology for RMG identification in soybeans. The methodology is expected to be widely adopted by soybean regionalization and germplasm exchanges throughout the world and will be helpful for characterizing the photothermal sensitivity and adaptability of the given soybean varieties. [ABSTRACT FROM AUTHOR]

Root traits are essential for optimising nutrient and water absorption and anchorage. However, changes in root traits and the contribution of root-to-shoot growth and development of soybean (Glycine max (L.) Merr.) across a century of breeding are poorly documented. In this study, we adopted a grafting technique, using 55 cultivars released in the three main soybean-production regions in China as rootstocks in a pot experiment and 24 cultivars from the Yellow-Huai-Hai Valley (YHH) region as rootstocks in a field experiment, with cv. Zigongdongdou as the common scion. Changes in soybean roots, including dry weight (DW) of roots, lateral root number (LRN) and taproot length (TRL), and their contribution to shoot development and biomass formation, including shoot DW, plant height and node number, were evaluated under optimal conditions in 2011. Aboveground traits declined with year of release in the YHH region and did not vary over time in the northern Heilongjiang province and mid-south Heilongjiang region except for shoot DW. The root traits root DW, LRN and TRL were similar over years of release in the pot and field experiments. The results suggest that the newer cultivars have lesser shoot growth and root capacity but the same amount of root growth as older cultivars. Root traits did not change during selection, suggesting that improvement in soybean root traits should be an aim in future breeding. We adopted a grafting technique using cultivars released from 1929–2006 in China as the rootstock and the cultivar Zigongdongdou as the common scion. We found that the aboveground traits declined with year of release of stock cultivar, while the measured root traits did not change significantly with year of release. This study established a method to study the intact root system and facilitates improvement of soybean root system. [ABSTRACT FROM AUTHOR]

This analysis identified five genes ( I Glyma.13G114100 i , I Glyma.13G114200 i , I Glyma.13G114300 i , I Glyma.13G114400 i and I Glyma.13G114500 i ) were hardly covered by clean reads (sequencing saturation < 0.03), which are located in the previously proposed region for the I ms1 i locus (Yang I et al i ., 2014); in other words, these genes were absent in the I ms1 i mutant bulk. Keywords: soybean; GmMS1; NACK2; CRISPR/Cas9; male sterility 1 EN soybean GmMS1 NACK2 CRISPR/Cas9 male sterility 1 1098 1100 3 06/15/21 20210601 NES 210601 Soybean is a typical photoperiod-sensitive self-pollinated crop. Given the known cytokinesis failure after telophase II of meiosis in I ms1 i mutant plants (Albertsen and Palmer, 1979), I Glyma.13G114200 i was selected as the most likely causal gene for the I ms1 i locus. [Extracted from the article]

Summary: Soybean flowering and maturation are strictly regulated by photoperiod. Photoperiod‐sensitive soybean varieties can undergo flowering reversion when switched from short‐day (SD) to long‐day (LD) conditions, suggesting the presence of a ‘floral‐inhibitor’ under LD conditions. We combined gene expression profiling with a study of transgenic plants and confirmed that GmFT1a, soybean Flowering Locus T (FT) homolog, is a floral inhibitor. GmFT1a is expressed specifically in leaves, similar to the flowering‐promoting FT homologs GmFT2a/5a. However, in Zigongdongdou (ZGDD), a model variety for studying flowering reversion, GmFT1a expression was induced by LD but inhibited by SD conditions. This was unexpected, as it is the complete opposite of the expression of flowering promoters GmFT2a/5a. Moreover, the key soybean maturity gene E1 may up‐regulate GmFT1a expression. It is also notable that GmFT1a expression was conspicuously high in late‐flowering varieties. Transgenic overexpression of GmFT1a delayed flowering and maturation in soybean, confirming that GmFT1a functions as a flowering inhibitor. This discovery highlights the complex impacts of the functional diversification of the FT gene family in soybean, and implies that antagonism between flowering‐inhibiting and flowering‐promoting FT homologs in this highly photoperiod‐sensitive plant may specify vegetative vs reproductive development. [ABSTRACT FROM AUTHOR]

Summary: Flowering is an indication of the transition from vegetative growth to reproductive growth and has considerable effects on the life cycle of soya bean (Glycine max). In this study, we employed the CRISPR/Cas9 system to specifically induce targeted mutagenesis of GmFT2a, an integrator in the photoperiod flowering pathway in soya bean. The soya bean cultivar Jack was transformed with three sgRNA/Cas9 vectors targeting different sites of endogenous GmFT2a via Agrobacterium tumefaciens‐mediated transformation. Site‐directed mutations were observed at all targeted sites by DNA sequencing analysis. T1‐generation soya bean plants homozygous for null alleles of GmFT2a frameshift mutated by a 1‐bp insertion or short deletion exhibited late flowering under natural conditions (summer) in Beijing, China (N39°58′, E116°20′). We also found that the targeted mutagenesis was stably heritable in the following T2 generation, and the homozygous GmFT2a mutants exhibited late flowering under both long‐day and short‐day conditions. We identified some ‘transgene‐clean’ soya bean plants that were homozygous for null alleles of endogenous GmFT2a and without any transgenic element from the T1 and T2 generations. These ‘transgene‐clean’ mutants of GmFT2a may provide materials for more in‐depth research of GmFT2a functions and the molecular mechanism of photoperiod responses in soya bean. They will also contribute to soya bean breeding and regional introduction. [ABSTRACT FROM AUTHOR]

As a new technology for gene editing, the CRISPR (clustered regularly interspaced short palindromic repeat)/Cas (CRISPR-associated) system has been rapidly and widely used for genome engineering in various organisms. In the present study, we successfully applied type II CRISPR/Cas9 system to generate and estimate genome editing in the desired target genes in soybean (Glycine max (L.) Merrill.). The single-guide RNA (sgRNA) and Cas9 cassettes were assembled on one vector to improve transformation efficiency, and we designed a sgRNA that targeted a transgene (bar) and six sgRNAs that targeted different sites of two endogenous soybean genes (GmFEI2 and GmSHR). The targeted DNA mutations were detected in soybean hairy roots. The results demonstrated that this customized CRISPR/Cas9 system shared the same efficiency for both endogenous and exogenous genes in soybean hairy roots. We also performed experiments to detect the potential of CRISPR/Cas9 system to simultaneously edit two endogenous soybean genes using only one customized sgRNA. Overall, generating and detecting the CRISPR/Cas9-mediated genome modifications in target genes of soybean hairy roots could rapidly assess the efficiency of each target loci. The target sites with higher efficiencies can be used for regular soybean transformation. Furthermore, this method provides a powerful tool for root-specific functional genomics studies in soybean. [ABSTRACT FROM AUTHOR]

Photo-thermal sensitivity is a crucial factor that determines the phenology, adaptation and yield production of soybean. However, the change of photo-thermal sensitivity due to a long process of soybean breeding remains unknown. To better understand this unique characteristic of soybean, we sought to evaluate the genetic improvement in photo-thermal sensitivity of 63 widely grown soybean cultivars, spanning 83 years of breeding (1923-2006), from four main subregions in China. Days to the first flower was measured, and photo-thermal sensitivity was calculated. We found that photo-thermal sensitivity of cultivars in the northern Heilongjiang ( NH) region showed a quadratic relationship with year of release. However, photo-thermal sensitivity was negatively correlated with year of release in the Huang-Huai-Hai Valley ( HH) region. There were no significant trends of change found in the mid-southern Heilongjiang ( MSH) and Jilin and Liaoning ( JL) regions. The changing trend of photo-thermal sensitivity was relatively consistent across different environments, particularly in the NH and HH regions (photoperiod, temperature or planting year). The insensitivity to photo-thermal condition provided an advantage for modern cultivars to achieve broad adaptation. [ABSTRACT FROM AUTHOR]

Soybean cultivars are extremely diverse in time to flowering and maturation as a result of various photoperiod sensitivities. The underlying molecular genetic mechanism is not fully clear, however, four maturity loci E1, E2, E3 and E4 have been molecularly identified. In this report, cultivars were selected with various photoperiod sensitivities from different ecological zones, which covered almost all maturity groups (MG) from MG 000 to MG VIII and MG X adapted from latitude N 18° to N 53°. They were planted in the field under natural daylength condition (ND) in Beijing, China or in pots under different photoperiod treatments. Maturity-related traits were then investigated. The four E maturity loci were genotyped at the molecular level. Our results suggested that these four E genes have different impacts on maturity and their allelic variations and combinations determine the diversification of soybean maturity and adaptation to different latitudes. The genetic mechanisms underlying photoperiod sensitivity and adaptation in wild soybean seemed unique from those in cultivated soybean. The allelic combinations and functional molecular markers for the four E loci will significantly assist molecular breeding towards high productivity. [ABSTRACT FROM AUTHOR]

Seed storage oil, in the form of triacylglycerol (TAG), is degraded to provide carbon and energy during germination and early seedling growth by the fatty acid β-oxidation in the peroxisome. Although the pathways for lipid degradation have been uncovered, understanding of the exact involved enzymes in soybean is still limited. Long-chain acyl-CoA synthetase (ACSL) is a critical enzyme that activates free fatty acid released from TAG to form the fatty acyl-CoA. Recent studies have shown the importance of ACSL in lipid degradation and synthesis, but few studies were focused on soybean. In this work, we cloned a ACSL gene from soybean and designated it as GmACSL2. Sequence analysis revealed that GmACSL2 encodes a protein of 733 amino acid residues, which is highly homologous to the ones in other higher plants. Complementation test showed that GmACSL2 could restore the growth of an ACS-deficient yeast strain (YB525). Co-expression assay in Nicotiana benthamiana indicated that GmACSL2 is located at peroxisome. Expression pattern analysis showed that GmACSL2 is highly expressed in germinating seedling and strongly induced 1 day after imbibition, which indicate that GmACSL2 may take part in the seed germination. GmACSL2 overexpression in yeast and soybean hairy root severely reduces the contents of the lipids and fatty acids, compared with controls in both cells, and enhances the β-oxidation efficiency in yeast. All these results suggest that GmACSL2 may take part in fatty acid and lipid degradation. In conclusion, peroxisomal GmACSL2 from Glycine max probably be involved in the lipid degradation during seed germination. [ABSTRACT FROM AUTHOR]

Background: With the migration of human beings, advances of agricultural sciences, evolution of planting patterns and global warming, soybeans have expanded to both tropical and high-latitude cold regions (HCRs). Unlike other regions, HCRs have much more significant and diverse photoperiods and temperature conditions over seasons or across latitudes, and HCR soybeans released there show rich diversity in maturity traits. However, HCR soybeans have not been as well classified into maturity groups (MGs) as other places. Therefore, it is necessary to identify MGs in HCRs and to genotype the maturity loci. Methods: Local varieties were collected from the northern part of Northeast China and the far-eastern region of Russia. Maturity group reference (MGR) soybeans of MGs MG000, MG00, and MG0 were used as references during field experiments. Both local varieties and MGR soybeans were planted for two years (2010-2011) in Heihe (N 50°15′, E 127°27′, H 168.5 m), China. The days to VE (emergence), R1 (beginning bloom) and R7 (beginning maturity) were recorded and statistically analyzed. Furthermore, some varieties were further genotyped at four molecularly-identified maturity loci E1, E2, E3 and E4. Results: The HCR varieties were classified into MG0 or even more early-maturing. In Heihe, some varieties matured much earlier than MG000, which is the most early-maturing known MG, and clustered into a separate group. We designated the group as MG0000, following the convention of MGs. HCR soybeans had relatively stable days to beginning bloom from emergence. The HCR varieties diversified into genotypes of E1, E2, E3 and E4. These loci had different effects on maturity. Conclusion: HCRs diversify early-maturing MGs of soybean. MG0000, a new MG that matures much earlier than known MGs, was developed. HCR soybean breeding should focus more on shortening post-flowering reproductive growth. E1, E2, E3, and E4 function differentially. [ABSTRACT FROM AUTHOR]

Key message: The major insight in this manuscript is that we identified a new flowering regulator, GmSOC1-like, which may participate in the initiation and maintenance of flowering in soybean. Abstract: Flowering is pivotal for the reproductive behavior of plants, and it is regulated by complex and coordinated genetic networks that are fine-tuned by endogenous cues and environmental signals. To better understand the molecular basis of flowering regulation in soybean, we isolated GmSOC1 and GmSOC1- like, two putative soybean orthologs for the Arabidopsis SUPPRESSOR OF OVEREXPRESSION OF CO1/AGAMOUS- LIKE 20 ( SOC1/ AGL20). The expression pattern of GmSOC1- like was analyzed by qRT-PCR in Zigongdongdou, a photoperiod-sensitive soybean cultivar. GmSOC1- like was widely expressed at different levels in most organs of the soybean, with the highest expression in the shoot apex during the early stage of floral transition. In addition, its expression showed a circadian rhythm pattern, with the highest expression at midnight under short-day (SD) condition. Intriguingly, GmSOC1- like was induced 4 days earlier than GmSOC1 during flowering transition in SD, suggesting that GmSOC1 and GmSOC1- like expression might be differentially regulated. However, under long-day (LD) condition, the expression of GmSOC1 and GmSOC1- like decreased gradually in the shoot apex of Zigongdongdou, which is in accordance with the fact that Zigongdongdou maintains vegetative growth in LD. In addition, overexpression of GmSOC1- like stimulated the flowering of Lotus corniculatus cv. supperroot plants. In conclusion, the results of this study indicate that GmSOC1- like may act as a flowering inducer in soybean. [ABSTRACT FROM AUTHOR]