15 results on '"Govaerts, Jannes"'
Search Results
2. Author Correction: A spatial architecture-embedding HLA signature to predict clinical response to immunotherapy in renal cell carcinoma
- Author
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Kinget, Lisa, Naulaerts, Stefan, Govaerts, Jannes, Vanmeerbeek, Isaure, Sprooten, Jenny, Laureano, Raquel S., Dubroja, Nikolina, Shankar, Gautam, Bosisio, Francesca M., Roussel, Eduard, Verbiest, Annelies, Finotello, Francesca, Ausserhofer, Markus, Lambrechts, Diether, Boeckx, Bram, Wozniak, Agnieszka, Boon, Louis, Kerkhofs, Johan, Zucman-Rossi, Jessica, Albersen, Maarten, Baldewijns, Marcella, Beuselinck, Benoit, and Garg, Abhishek D.
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- 2024
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- View/download PDF
3. Circulating biomarkers at diagnosis correlate with distant metastases of early luminal-like breast cancer
- Author
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Lambrechts, Yentl, Garg, Abhishek D., Floris, Giuseppe, Punie, Kevin, Neven, Patrick, Nevelsteen, Ines, Govaerts, Jannes, Richard, François, Laenen, Annouschka, Desmedt, Christine, Wildiers, Hans, and Hatse, Sigrid
- Published
- 2023
- Full Text
- View/download PDF
4. Single cell dynamics of tumor specificity vs bystander activity in CD8+ T cells define the diverse immune landscapes in colorectal cancer
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Borràs, Daniel Morales, Verbandt, Sara, Ausserhofer, Markus, Sturm, Gregor, Lim, Jinyeong, Verge, Gil Arasa, Vanmeerbeek, Isaure, Laureano, Raquel S., Govaerts, Jannes, Sprooten, Jenny, Hong, Yourae, Wall, Rebecca, De Hertogh, Gert, Sagaert, Xavier, Bislenghi, Gabriele, D’Hoore, André, Wolthuis, Albert, Finotello, Francesca, Park, Woong-Yang, Naulaerts, Stefan, Tejpar, Sabine, and Garg, Abhishek D.
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- 2023
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- View/download PDF
5. Trial watch: anticancer vaccination with dendritic cells.
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Borges, Francisca, Laureano, Raquel S., Vanmeerbeek, Isaure, Sprooten, Jenny, Demeulenaere, Octavie, Govaerts, Jannes, Kinget, Lisa, Saraswat, Saurabh, Beuselinck, Benoit, De Vleeschouwer, Steven, Clement, Paul, De Smet, Frederik, Sorg, Rüdiger V., Datsi, Angeliki, Vigneron, Nathalie, Naulaerts, Stefan, and Garg, Abhishek D.
- Abstract
Dendritic cells (DCs) are critical players at the intersection of innate and adaptive immunity, making them ideal candidates for anticancer vaccine development. DC-based immunotherapies typically involve isolating patient-derived DCs, pulsing them with tumor-associated antigens (TAAs) or tumor-specific antigens (TSAs), and utilizing maturation cocktails to ensure their effective activation. These matured DCs are then reinfused to elicit tumor-specific T-cell responses. While this approach has demonstrated the ability to generate potent immune responses, its clinical efficacy has been limited due to the immunosuppressive tumor microenvironment. Recent efforts have focused on enhancing the immunogenicity of DC-based vaccines, particularly through combination therapies with T cell-targeting immunotherapies. This Trial Watch summarizes recent advances in DC-based cancer treatments, including the development of new preclinical and clinical strategies, and discusses the future potential of DC-based vaccines in the evolving landscape of immuno-oncology. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
6. The cell stress and immunity cycle in cancer: Toward next generation of cancer immunotherapy.
- Author
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Laureano, Raquel S., Vanmeerbeek, Isaure, Sprooten, Jenny, Govaerts, Jannes, Naulaerts, Stefan, and Garg, Abhishek D.
- Subjects
CELL communication ,CELLULAR immunity ,IMMUNITY ,IMMUNOTHERAPY ,CANCER cells - Abstract
Summary: The cellular stress and immunity cycle is a cornerstone of organismal homeostasis. Stress activates intracellular and intercellular communications within a tissue or organ to initiate adaptive responses aiming to resolve the origin of this stress. If such local measures are unable to ameliorate this stress, then intercellular communications expand toward immune activation with the aim of recruiting immune cells to effectively resolve the situation while executing tissue repair to ameliorate any damage and facilitate homeostasis. This cellular stress‐immunity cycle is severely dysregulated in diseased contexts like cancer. On one hand, cancer cells dysregulate the normal cellular stress responses to reorient them toward upholding growth at all costs, even at the expense of organismal integrity and homeostasis. On the other hand, the tumors severely dysregulate or inhibit various components of organismal immunity, for example, by facilitating immunosuppressive tumor landscape, lowering antigenicity, and increasing T‐cell dysfunction. In this review we aim to comprehensively discuss the basis behind tumoral dysregulation of cellular stress‐immunity cycle. We also offer insights into current understanding of the regulators and deregulators of this cycle and how they can be targeted for conceptualizing successful cancer immunotherapy regimen. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
7. Single cell dynamics of tumor specificity vs bystander activity in CD8+ T cells define the diverse immune landscapes in colorectal cancer.
- Author
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Borràs, Daniel Morales, Verbandt, Sara, Ausserhofer, Markus, Sturm, Gregor, Lim, Jinyeong, Verge, Gil Arasa, Vanmeerbeek, Isaure, Laureano, Raquel S., Govaerts, Jannes, Sprooten, Jenny, Hong, Yourae, Wall, Rebecca, De Hertogh, Gert, Sagaert, Xavier, Bislenghi, Gabriele, D'Hoore, André, Wolthuis, Albert, Finotello, Francesca, Park, Woong-Yang, and Naulaerts, Stefan
- Subjects
GUT microbiome ,T cells ,T cell receptors ,COLORECTAL cancer ,TUMOR classification ,IMMUNE checkpoint proteins - Abstract
CD8
+ T cell activation via immune checkpoint blockade (ICB) is successful in microsatellite instable (MSI) colorectal cancer (CRC) patients. By comparison, the success of immunotherapy against microsatellite stable (MSS) CRC is limited. Little is known about the most critical features of CRC CD8+ T cells that together determine the diverse immune landscapes and contrasting ICB responses. Hence, we pursued a deep single cell mapping of CRC CD8+ T cells on transcriptomic and T cell receptor (TCR) repertoire levels in a diverse patient cohort, with additional surface proteome validation. This revealed that CRC CD8+ T cell dynamics are underscored by complex interactions between interferon-γ signaling, tumor reactivity, TCR repertoire, (predicted) TCR antigen-specificities, and environmental cues like gut microbiome or colon tissue-specific 'self-like' features. MSI CRC CD8+ T cells showed tumor-specific activation reminiscent of canonical 'T cell hot' tumors, whereas the MSS CRC CD8+ T cells exhibited tumor unspecific or bystander-like features. This was accompanied by inflammation reminiscent of 'pseudo-T cell hot' tumors. Consequently, MSI and MSS CRC CD8+ T cells showed overlapping phenotypic features that differed dramatically in their TCR antigen-specificities. Given their high discriminating potential for CD8+ T cell features/specificities, we used the single cell tumor-reactive signaling modules in CD8+ T cells to build a bulk tumor transcriptome classification for CRC patients. This "Immune Subtype Classification" (ISC) successfully distinguished various tumoral immune landscapes that showed prognostic value and predicted immunotherapy responses in CRC patients. Thus, we deliver a unique map of CRC CD8+ T cells that drives a novel tumor immune landscape classification, with relevance for immunotherapy decision-making. [ABSTRACT FROM AUTHOR]- Published
- 2023
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8. Multiomics and spatial mapping characterizes human CD8+ T cell states in cancer.
- Author
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Naulaerts, Stefan, Datsi, Angeliki, Borras, Daniel M., Antoranz Martinez, Asier, Messiaen, Julie, Vanmeerbeek, Isaure, Sprooten, Jenny, Laureano, Raquel S., Govaerts, Jannes, Panovska, Dena, Derweduwe, Marleen, Sabel, Michael C., Rapp, Marion, Ni, Weiming, Mackay, Sean, Van Herck, Yannick, Gelens, Lendert, Venken, Tom, More, Sanket, and Bechter, Oliver
- Subjects
T cells ,T cell receptors ,MULTIOMICS ,CANCER cells ,CELL death ,IMMUNOLOGIC memory ,DENDRITIC cells - Abstract
Clinically relevant immunological biomarkers that discriminate between diverse hypofunctional states of tumor-associated CD8
+ T cells remain disputed. Using multiomics analysis of CD8+ T cell features across multiple patient cohorts and tumor types, we identified tumor niche–dependent exhausted and other types of hypofunctional CD8+ T cell states. CD8+ T cells in "supportive" niches, like melanoma or lung cancer, exhibited features of tumor reactivity–driven exhaustion (CD8+ TEX ). These included a proficient effector memory phenotype, an expanded T cell receptor (TCR) repertoire linked to effector exhaustion signaling, and a cancer-relevant T cell–activating immunopeptidome composed of largely shared cancer antigens or neoantigens. In contrast, "nonsupportive" niches, like glioblastoma, were enriched for features of hypofunctionality distinct from canonical exhaustion. This included immature or insufficiently activated T cell states, high wound healing signatures, nonexpanded TCR repertoires linked to anti-inflammatory signaling, high T cell–recognizable self-epitopes, and an antiproliferative state linked to stress or prodeath responses. In situ spatial mapping of glioblastoma highlighted the prevalence of dysfunctional CD4+ :CD8+ T cell interactions, whereas ex vivo single-cell secretome mapping of glioblastoma CD8+ T cells confirmed negligible effector functionality and a promyeloid, wound healing–like chemokine profile. Within immuno-oncology clinical trials, anti–programmed cell death protein 1 (PD-1) immunotherapy facilitated glioblastoma's tolerogenic disparities, whereas dendritic cell (DC) vaccines partly corrected them. Accordingly, recipients of a DC vaccine for glioblastoma had high effector memory CD8+ T cells and evidence of antigen-specific immunity. Collectively, we provide an atlas for assessing different CD8+ T cell hypofunctional states in immunogenic versus nonimmunogenic cancers. Interrogating T cells: Responses to cancer immunotherapy regimens depend on a number of factors, including the T cells and the cancer cells themselves. Here, Naulaerts et al. compared CD8+ T cell phenotypes across multiple cancer types to identify features that associated with those tumors. CD8+ T cells in immunogenic cancers such as melanoma and lung adenocarcinoma tended to have traditional exhaustion signatures. In contrast, CD8+ T cells in glioblastoma were enriched for a distinct hypofunctional state. The authors investigated clinical trial data to further highlight these differences and also showed that a dendritic cell vaccine may correct the hypofunctional CD8+ T cell state observed in glioblastoma. Together, these results provide insight into CD8+ T cell phenotypes in the context of human cancer. —CM [ABSTRACT FROM AUTHOR]- Published
- 2023
- Full Text
- View/download PDF
9. Trial watch: chemotherapy-induced immunogenic cell death in oncology.
- Author
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Sprooten, Jenny, Laureano, Raquel S., Vanmeerbeek, Isaure, Govaerts, Jannes, Naulaerts, Stefan, Borras, Daniel M., Kinget, Lisa, Fucíková, Jitka, Špíšek, Radek, Jelínková, Lenka Palová, Kepp, Oliver, Kroemer, Guido, Krysko, Dmitri V., Coosemans, An, Vaes, Rianne D.W., De Ruysscher, Dirk, De Vleeschouwer, Steven, Wauters, Els, Smits, Evelien, and Tejpar, Sabine
- Subjects
CELL death ,TYPE I interferons ,CHEMOTHERAPY complications ,IMMUNE response ,CANCER cells - Abstract
Immunogenic cell death (ICD) refers to an immunologically distinct process of regulated cell death that activates, rather than suppresses, innate and adaptive immune responses. Such responses culminate into T cell-driven immunity against antigens derived from dying cancer cells. The potency of ICD is dependent on the immunogenicity of dying cells as defined by the antigenicity of these cells and their ability to expose immunostimulatory molecules like damage-associated molecular patterns (DAMPs) and cytokines like type I interferons (IFNs). Moreover, it is crucial that the host's immune system can adequately detect the antigenicity and adjuvanticity of these dying cells. Over the years, several well-known chemotherapies have been validated as potent ICD inducers, including (but not limited to) anthracyclines, paclitaxels, and oxaliplatin. Such ICD-inducing chemotherapeutic drugs can serve as important combinatorial partners for anti-cancer immunotherapies against highly immuno-resistant tumors. In this Trial Watch, we describe current trends in the preclinical and clinical integration of ICD-inducing chemotherapy in the existing immuno-oncological paradigms. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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10. The Interface of Tumour-Associated Macrophages with Dying Cancer Cells in Immuno-Oncology.
- Author
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Vanmeerbeek, Isaure, Govaerts, Jannes, Laureano, Raquel S., Sprooten, Jenny, Naulaerts, Stefan, Borras, Daniel M., Laoui, Damya, Mazzone, Massimiliano, Van Ginderachter, Jo A., and Garg, Abhishek D.
- Subjects
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CANCER cell proliferation , *CANCER cells , *MACROPHAGES , *TUMOR microenvironment , *CELL death , *TUMOR growth - Abstract
Tumour-associated macrophages (TAMs) are essential players in the tumour microenvironment (TME) and modulate various pro-tumorigenic functions such as immunosuppression, angiogenesis, cancer cell proliferation, invasion and metastasis, along with resistance to anti-cancer therapies. TAMs also mediate important anti-tumour functions and can clear dying cancer cells via efferocytosis. Thus, not surprisingly, TAMs exhibit heterogeneous activities and functional plasticity depending on the type and context of cancer cell death that they are faced with. This ultimately governs both the pro-tumorigenic and anti-tumorigenic activity of TAMs, making the interface between TAMs and dying cancer cells very important for modulating cancer growth and the efficacy of chemo-radiotherapy or immunotherapy. In this review, we discuss the interface of TAMs with cancer cell death from the perspectives of cell death pathways, TME-driven variations, TAM heterogeneity and cell-death-inducing anti-cancer therapies. We believe that a better understanding of how dying cancer cells influence TAMs can lead to improved combinatorial anti-cancer therapies, especially in combination with TAM-targeting immunotherapies. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
11. Trial watch: Dendritic cell (DC)-based immunotherapy for cancer.
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Laureano, Raquel S., Sprooten, Jenny, Vanmeerbeerk, Isaure, Borras, Daniel M., Govaerts, Jannes, Naulaerts, Stefan, Berneman, Zwi N., Beuselinck, Benoit, Bol, Kalijn F., Borst, Jannie, Coosemans, an, Datsi, Angeliki, Fučíková, Jitka, Kinget, Lisa, Neyns, Bart, Schreibelt, Gerty, Smits, Evelien, Sorg, Rüdiger V., Spisek, Radek, and Thielemans, Kris
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DENDRITIC cells ,IMMUNOTHERAPY ,CANCER vaccines ,IMMUNE response ,T cells - Abstract
Dendritic cell (DC)-based vaccination for cancer treatment has seen considerable development over recent decades. However, this field is currently in a state of flux toward niche-applications, owing to recent paradigm-shifts in immuno-oncology mobilized by T cell-targeting immunotherapies. DC vaccines are typically generated using autologous (patient-derived) DCs exposed to tumor-associated or -specific antigens (TAAs or TSAs), in the presence of immunostimulatory molecules to induce DC maturation, followed by reinfusion into patients. Accordingly, DC vaccines can induce TAA/TSA-specific CD8
+ /CD4+ T cell responses. Yet, DC vaccination still shows suboptimal anti-tumor efficacy in the clinic. Extensive efforts are ongoing to improve the immunogenicity and efficacy of DC vaccines, often by employing combinatorial chemo-immunotherapy regimens. In this Trial Watch, we summarize the recent preclinical and clinical developments in this field and discuss the ongoing trends and future perspectives of DCbased immunotherapy for oncological indications. [ABSTRACT FROM AUTHOR]- Published
- 2022
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12. Relation between circulating biomarkers at diagnosis of early luminal-like breast cancer and subsequent risk of distant metastases.
- Author
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Lambrechts, Yentl, Garg, Abhishek, Floris, Giuseppe, Punie, Kevin, Neven, Patrick, Nevelsteen, Ines, Govaerts, Jannes, Richard, François, Laenen, Annouschka, Desmedt, Christine, Wildiers, Hans, and Hatse, Sigrid
- Published
- 2023
- Full Text
- View/download PDF
13. Targeting conserved TIM3+VISTA+ tumor-associated macrophages overcomes resistance to cancer immunotherapy.
- Author
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Vanmeerbeek, Isaure, Naulaerts, Stefan, Sprooten, Jenny, Laureano, Raquel S., Govaerts, Jannes, Trotta, Rosa, Pretto, Samantha, Shikang Zhao, Cafarello, Sarah Trusso, Verelst, Joren, Jacquemyn, Maarten, Pociupany, Martyna, Boon, Louis, Schlenner, Susan M., Tejpar, Sabine, Daelemans, Dirk, Mazzone, Massimiliano, and Garg, Abhishek D.
- Subjects
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REGULATORY T cells , *T cells , *TYPE I interferons , *IMMUNOTHERAPY , *CANCER cells , *MACROPHAGES , *TUMOR suppressor genes - Abstract
Despite the success of immunotherapy, overcoming immunoresistance in cancer remains challenging. We identified a unique niche of tumor-associated macrophages (TAMs), coexpressing T cell immunoglobulin and mucin domain-containing 3 (TIM3) and V-domain immunoglobulin suppressor of T cell activation (VISTA), that dominated human and mouse tumors resistant to most of the currently used immunotherapies. TIM3+VISTA+ TAMs were sustained by IL-4-enriching tumors with low (neo)antigenic and T cell-depleted features. TIM3+VISTA+ TAMs showed an anti-inflammatory and protumorigenic phenotype coupled with inability to sense type I interferon (IFN). This was established with cancer cells succumbing to immunogenic cell death (ICD). Dying cancer cells not only triggered autocrine type I IFNs but also exposed HMGB1/VISTA that engaged TIM3/VISTA on TAMs to suppress paracrine IFN-responses. Accordingly, TIM3/VISTA blockade synergized with paclitaxel, an ICD-inducing chemotherapy, to repolarize TIM3+VISTA+ TAMs to proinflammatory TAMs that killed cancer cells via tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) signaling. We propose targeting TIM3+VISTA+ TAMs to overcome immunoresistant tumors. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
14. Lymph node and tumor-associated PD-L1 + macrophages antagonize dendritic cell vaccines by suppressing CD8 + T cells.
- Author
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Sprooten J, Vanmeerbeek I, Datsi A, Govaerts J, Naulaerts S, Laureano RS, Borràs DM, Calvet A, Malviya V, Kuballa M, Felsberg J, Sabel MC, Rapp M, Knobbe-Thomsen C, Liu P, Zhao L, Kepp O, Boon L, Tejpar S, Borst J, Kroemer G, Schlenner S, De Vleeschouwer S, Sorg RV, and Garg AD
- Subjects
- Humans, Animals, Mice, CD8-Positive T-Lymphocytes, B7-H1 Antigen, Macrophages, Dendritic Cells, Lymph Nodes metabolism, Glioblastoma, Vaccines metabolism
- Abstract
Current immunotherapies provide limited benefits against T cell-depleted tumors, calling for therapeutic innovation. Using multi-omics integration of cancer patient data, we predict a type I interferon (IFN) response
HIGH state of dendritic cell (DC) vaccines, with efficacious clinical impact. However, preclinical DC vaccines recapitulating this state by combining immunogenic cancer cell death with induction of type I IFN responses fail to regress mouse tumors lacking T cell infiltrates. Here, in lymph nodes (LNs), instead of activating CD4+ /CD8+ T cells, DCs stimulate immunosuppressive programmed death-ligand 1-positive (PD-L1+ ) LN-associated macrophages (LAMs). Moreover, DC vaccines also stimulate PD-L1+ tumor-associated macrophages (TAMs). This creates two anatomically distinct niches of PD-L1+ macrophages that suppress CD8+ T cells. Accordingly, a combination of PD-L1 blockade with DC vaccines achieves significant tumor regression by depleting PD-L1+ macrophages, suppressing myeloid inflammation, and de-inhibiting effector/stem-like memory T cells. Importantly, clinical DC vaccines also potentiate T cell-suppressive PD-L1+ TAMs in glioblastoma patients. We propose that a multimodal immunotherapy and vaccination regimen is mandatory to overcome T cell-depleted tumors., Competing Interests: Declaration of interests A.D.G. received honoraria/funding from Boehringer Ingelheim, Miltenyi Biotec, Novigenix, SOTIO, and IsoPlexis., (Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.)- Published
- 2024
- Full Text
- View/download PDF
15. Multiomics and spatial mapping characterizes human CD8 + T cell states in cancer.
- Author
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Naulaerts S, Datsi A, Borras DM, Antoranz Martinez A, Messiaen J, Vanmeerbeek I, Sprooten J, Laureano RS, Govaerts J, Panovska D, Derweduwe M, Sabel MC, Rapp M, Ni W, Mackay S, Van Herck Y, Gelens L, Venken T, More S, Bechter O, Bergers G, Liston A, De Vleeschouwer S, Van Den Eynde BJ, Lambrechts D, Verfaillie M, Bosisio F, Tejpar S, Borst J, Sorg RV, De Smet F, and Garg AD
- Subjects
- Humans, CD8-Positive T-Lymphocytes, Multiomics, Receptors, Antigen, T-Cell metabolism, Glioblastoma metabolism, Lung Neoplasms
- Abstract
Clinically relevant immunological biomarkers that discriminate between diverse hypofunctional states of tumor-associated CD8
+ T cells remain disputed. Using multiomics analysis of CD8+ T cell features across multiple patient cohorts and tumor types, we identified tumor niche-dependent exhausted and other types of hypofunctional CD8+ T cell states. CD8+ T cells in "supportive" niches, like melanoma or lung cancer, exhibited features of tumor reactivity-driven exhaustion (CD8+ TEX ). These included a proficient effector memory phenotype, an expanded T cell receptor (TCR) repertoire linked to effector exhaustion signaling, and a cancer-relevant T cell-activating immunopeptidome composed of largely shared cancer antigens or neoantigens. In contrast, "nonsupportive" niches, like glioblastoma, were enriched for features of hypofunctionality distinct from canonical exhaustion. This included immature or insufficiently activated T cell states, high wound healing signatures, nonexpanded TCR repertoires linked to anti-inflammatory signaling, high T cell-recognizable self-epitopes, and an antiproliferative state linked to stress or prodeath responses. In situ spatial mapping of glioblastoma highlighted the prevalence of dysfunctional CD4+ :CD8+ T cell interactions, whereas ex vivo single-cell secretome mapping of glioblastoma CD8+ T cells confirmed negligible effector functionality and a promyeloid, wound healing-like chemokine profile. Within immuno-oncology clinical trials, anti-programmed cell death protein 1 (PD-1) immunotherapy facilitated glioblastoma's tolerogenic disparities, whereas dendritic cell (DC) vaccines partly corrected them. Accordingly, recipients of a DC vaccine for glioblastoma had high effector memory CD8+ T cells and evidence of antigen-specific immunity. Collectively, we provide an atlas for assessing different CD8+ T cell hypofunctional states in immunogenic versus nonimmunogenic cancers.- Published
- 2023
- Full Text
- View/download PDF
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