21 results on '"Gillespie, Jessica"'
Search Results
2. Blending Behavioural Theory and Narrative Analysis to Explore the Lived Experience of Obesity and Assess Potential Engagement in a UK Weight Management Service: Theory and Narrative Approaches in Weight Management.
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Gillespie, Jessica, Wright, Hannah, Pinkney, Jonathan, and Lloyd, Helen
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WEIGHT loss ,LOCUS of control ,HEALTH services accessibility ,MEDICAL care use ,LIFESTYLES ,QUALITATIVE research ,SELF-efficacy ,MENTAL health ,REGULATION of body weight ,INTERVIEWING ,EXPERIENCE ,MOTIVATION (Psychology) ,THEMATIC analysis ,ATTITUDE (Psychology) ,HEALTH behavior ,ATTITUDES toward obesity ,CONCEPTUAL structures ,HEALTH promotion ,CHANGE ,OBESITY ,PATIENT participation ,PATIENTS' attitudes ,WEIGHT gain ,SELF-perception - Abstract
Background: Current treatments for people with obesity emphasise the need for person-centred approaches that consider complex biopsychosocial factors and value the lived experience of people when attempting to lose weight. Methods: Narrative interviews (n = 20) were conducted with people living with obesity to explore the causes of their weight gain and their expectations and engagement with treatment at a Weight Management Clinic. A mixed inductive and deductive qualitative analysis identified utterances that represented psychological constructs used to understand self-appraisal and health behaviour. A narrative analysis was used to situate these findings in the context of a participant's life story. Results: Locus of control was a dominant construct evidenced through a person's attributional style and self-efficacy. Transcripts represented a heightened sense of self-understanding and shifts in control, and styles of attribution and efficacy resulted in either stasis or self-actualisation. The Stages of Change model could be applied to narratives to ascertain a patient's motivation to access treatment. Importantly, narrative interviews also allowed for the consideration of how a person's systemic context influenced their weight. Conclusion: Narrative interaction supports both self- and shared understandings of the causes and consequences of obesity for individuals, in a non-blaming or shaming manner. It provides an opportunity to enhance engagement through tailored, person-centred treatments. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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- View/download PDF
3. Characterization of mismatch‐repair/microsatellite instability‐discordant endometrial cancers.
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Riedinger, Courtney J., Esnakula, Ashwini, Haight, Paulina J., Suarez, Adrian A., Chen, Wei, Gillespie, Jessica, Villacres, Alyssa, Chassen, Alexis, Cohn, David E., Goodfellow, Paul J., and Cosgrove, Casey M.
- Abstract
Background: Mismatch‐repair (MMR)/microsatellite instability (MSI) status has therapeutic implications in endometrial cancer (EC). The authors evaluated the concordance of testing and factors contributing to MMR expression heterogeneity. Methods: Six hundred sixty‐six ECs were characterized using immunohistochemistry (IHC), MSI testing, and mut‐L homolog 1 (MLH1) methylation. Select samples underwent whole‐transcriptome analysis and next‐generation sequencing. MMR expression of metastatic/recurrent sites was evaluated. Results: MSI testing identified 27.3% of cases as MSI‐high (n = 182), MMR IHC identified 25.1% cases as MMR‐deficient (n = 167), and 3.8% of cases (n = 25) demonstrated discordant results. A review of IHC staining explained discordant results in 18 cases, revealing subclonal loss of MLH1/Pms 1 homolog 2 (PMS2) (n = 10) and heterogeneous MMR IHC (mut‐S homolog 6 [MSH6], n = 7; MLH1/PMS2, n = 1). MSH6‐associated Lynch syndrome was diagnosed in three of six cases with heterogeneous expression. Subclonal or heterogeneous cases had a 38.9% recurrence rate (compared with 16.7% in complete MMR‐deficient cases and 9% in MMR‐proficient cases) and had abnormal MMR IHC results in all metastatic recurrent sites (n = 7). Tumors with subclonal MLH1/PMS2 demonstrated 74 differentially expressed genes (determined using digital spatial transcriptomics) when stratified by MLH1 expression, including many associated with epithelial–mesenchymal transition. Conclusions: Subclonal/heterogeneous MMR IHC cases showed epigenetic loss in 66.7%, germline mutations in 16.7%, and somatic mutations in 16.7%. MMR IHC reported as intact/deficient missed 21% of cases of Lynch syndrome. EC with subclonal/heterogeneous MMR expression demonstrated a high recurrence rate, and metastatic/recurrent sites were MMR‐deficient. Transcriptional analysis indicated an increased risk for migration/metastasis, suggesting that clonal MMR deficiency may be a driver for tumor aggressiveness. Reporting MMR IHC only as intact/deficient, without reporting subclonal and heterogeneous staining, misses opportunities for biomarker‐directed therapy. Plain Language Summary: Endometrial cancer is the most common gynecologic cancer, and 20%–40% of tumors have a defect in DNA proofreading known as mismatch‐repair (MMR) deficiency.These results can be used to guide therapy.Tests for this defect can yield differing results, revealing heterogeneous (mixed) proofreading capabilities.Tumors with discordant testing results and mixed MMR findings can have germline or somatic defects in MMR genes.Cells with deficient DNA proofreading in tumors with mixed MMR findings have DNA expression profiles linked to more aggressive characteristics and cancer spread.These MMR‐deficient cells may drive tumor behavior and the risk of spreading cancer. Intratumoral heterogeneity, including subclonal and heterogeneous mismatch‐repair (MMR) expression, can yield discordant results from diagnostic assays, such as immunohistochemistry and polymerase chain reaction‐based microsatellite instability testing. Within endometrial cancers, subclonal or heterogeneous MMR expression may be attributed to germline or somatic mutations in MMR proteins, and the authors demonstrate that these tumors are characterized by clonal selection favoring the propagation of MMR deficiency at sites of metastasis or recurrence. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Year One Results from the Multisite Randomized Evaluation of the i3 Scale-Up of Reading Recovery
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May, Henry, Gray, Abigail, Sirinides, Philip, Goldsworthy, Heather, Armijo, Michael, Sam, Cecile, Gillespie, Jessica N., and Tognatta, Namrata
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Reading Recovery (RR) is a short-term, one-to-one intervention designed to help the lowest achieving readers in first grade. This article presents first-year results from the multisite randomized controlled trial (RCT) and implementation study under the $55 million Investing in Innovation (i3) Scale-Up Project. For the 2011-2012 school year, the estimated standardized effect of RR on students' Iowa Tests of Basic Skills (ITBS) Total Reading Scores was 0.69 standard deviations relative to the population of struggling readers eligible for RR under the i3 scale-up and 0.47 standard deviations relative to the nationwide population of all first graders. School-level implementation of RR was, in most respects, faithful to the RR "Standards and Guidelines," and the intensive training provided to new RR teachers was viewed as critical to successful implementation.
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- 2015
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5. TGF-β and CTGF are Mitogenic Output Mediators of Wnt/β-Catenin Signaling in Desmoid Fibromatosis
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Varghese, Sumi, Braggio, Danielle A., Gillespie, Jessica, Toland, Amanda E., Pollock, Raphael, Mayerson, Joel, Scharschmidt, Thomas, and Iwenofu, Obiajulu H.
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- 2017
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6. Functional Analysis of BARD1 Missense Variants in Homology-Directed Repair of DNA Double Strand Breaks
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Lee, Cindy, Banerjee, Tapahsama, Gillespie, Jessica, Ceravolo, Amanda, Parvinsmith, Matthew R., Starita, Lea M., Fields, Stanley, Toland, Amanda E., and Parvin, Jeffrey D.
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- 2015
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7. Reply to "Mismatch repair and microsatellite instability—Recommendation for an optimal test strategy".
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Riedinger, Courtney J., Esnakula, Ashwini, Haight, Paulina J., Suarez, Adrian A., Chen, Wei, Gillespie, Jessica, Villacres, Alyssa, Chassen, Alexis, Cohn, David E., Goodfellow, Paul J., and Cosgrove, Casey M.
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MICROSATELLITE repeats ,HEREDITARY nonpolyposis colorectal cancer - Abstract
This document is a reply to a previous article discussing the significance of tumors with "unusual staining" from mismatch repair (MMR) immunohistochemistry (IHC) in endometrial cancer. The authors agree that ongoing conversation and multiple testing strategies are needed to improve outcomes for patients. They also emphasize the importance of quality assurance in performing and interpreting MMR IHC, including uniform fixation and grossing protocols. The authors acknowledge the potential benefits of primary assessment of MMR IHC staining on biopsy specimens but note that in their cohort, preoperative biopsies were performed outside their institution and MMR IHC was not performed on these specimens. They also discuss the interpretation of MSI testing in endometrial cancer and the use of the Promega panel for clarifying cases that are MSI-low on the National Cancer Institute panel. Further research is needed to define optimal testing for MMR-deficient/MSI endometrial cancer and predict response to immunotherapy. [Extracted from the article]
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- 2024
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8. Inverse gold photonic crystals and conjugated polymer coated opals for functional materials
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Landon, Preston B., Gutierrez, Jose, Ferraris, John P., Martinez, Itzel Lucio, Giridharagopal, Rajiv, Wu, Yi-Chieh, Lee, Sergey, Parikh, Kunjal, Gillespie, Jessica, Ussery, Geoffrey, Karimi, Behzad, Baughman, Ray, Zakhidov, Anvar, and Glosser, R.
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- 2003
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9. Understanding addiction as a method of emotion regulation: Using groups to develop alternative ways of coping.
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Priddy, Sasha, Oyervides, Sonia, and Gillespie, Jessica
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EPIDEMIOLOGY ,CLINICAL psychology ,MENTAL health ,EMOTIONS ,PSYCHOLOGICAL adaptation - Published
- 2018
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10. MAX Mutations in Endometrial Cancer: Clinicopathologic Associations and Recurrent MAX p.His28Arg Functional Characterization.
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Walker, Christopher J., Rush, Craig M., Dama, Paola, O'Hern, Matthew J., Cosgrove, Casey M., Gillespie, Jessica L., Zingarelli, Roman A., Smith, Blair, Stein, Maggie E., Mutch, David G., Shakya, Reena, Chia-Wen Chang, Selvendiran, Karuppaiyah, Song, Jonathan W., Cohn, David E., Goodfellow, Paul J., and Chang, Chia-Wen
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ENDOMETRIAL cancer ,CANCER genetics ,GENETIC mutation ,TRANSCRIPTION factors ,IMMUNOPRECIPITATION ,GENETICS ,AMINO acids ,ANIMAL populations ,ANIMALS ,ARGININE ,CANCER invasiveness ,CELL culture ,DISEASE susceptibility ,EPITHELIAL cells ,GENETIC techniques ,MICE ,PROTEINS ,RESEARCH funding ,ENDOMETRIAL tumors ,HISTIDINE ,PATHOLOGIC neovascularization - Abstract
Background: Genomic studies have revealed that multiple genes are mutated at varying frequency in endometrial cancer (EC); however, the relevance of many of these mutations is poorly understood. An EC-specific recurrent mutation in the MAX transcription factor p.His28Arg was recently discovered. We sought to assess the functional consequences of this hotspot mutation and determine its association with cancer-relevant phenotypes.Methods: MAX was sequenced in 509 endometrioid ECs, and associations between mutation status and clinicopathologic features were assessed. EC cell lines stably expressing MAXH28R were established and used for functional experiments. DNA binding was examined using electrophoretic mobility shift assays and chromatin immunoprecipitation. Transcriptional profiling was performed with microarrays. Murine flank (six to 11 mice per group) and intraperitoneal tumor models were used for in vivo studies. Vascularity of xenografts was assessed by MECA-32 immunohistochemistry. The paracrine pro-angiogenic nature of MAXH28R-expressing EC cells was tested using microfluidic HUVEC sprouting assays and VEGFA enzyme-linked immunosorbent assays. All statistical tests were two-sided.Results: Twenty-two of 509 tumors harbored mutations in MAX, including 12 tumors with the p.His28Arg mutation. Patients with a MAX mutation had statistically significantly reduced recurrence-free survival (hazard ratio = 4.00, 95% confidence interval = 1.15 to 13.91, P = .03). MAXH28R increased affinity for canonical E-box sequences, and MAXH28R-expressing EC cells dramatically altered transcriptional profiles. MAXH28R-derived xenografts statistically significantly increased vascular area compared with MAXWT and empty vector tumors (P = .003 and P = .008, respectively). MAXH28R-expressing EC cells secreted nearly double the levels of VEGFA compared with MAXWT cells (P = .03, .005, and .005 at 24, 48, and 72 hours, respectively), and conditioned media from MAXH28R cells increased sprouting when applied to HUVECs.Conclusion: These data highlight the importance of MAX mutations in EC and point to increased vascularity as one mechanism contributing to clinical aggressiveness of EC. [ABSTRACT FROM AUTHOR]- Published
- 2018
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11. Differential mutation frequencies in metastatic cutaneous squamous cell carcinomas versus primary tumors.
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Yilmaz, Ayse Selen, Ozer, Hatice Gulcin, Gillespie, Jessica L., Allain, Dawn C., Bernhardt, Madison N., Furlan, Karina Colossi, Castro, Leticia T. F., Peters, Sara B., Nagarajan, Priyadharsini, Kang, Stephen Y., Iwenofu, O. Hans, Olencki, Thomas, Teknos, Theodoros N., and Toland, Amanda Ewart
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SQUAMOUS cell carcinoma ,CARCINOMA ,GENETIC mutation ,CANCER invasiveness ,METASTASIS - Abstract
BACKGROUND Exome and targeted sequencing studies have identified potential driver mutations for a variety of tumor types. Cutaneous squamous cell carcinoma (cSCC) is one of the most highly mutated cancers but typically is associated with low rates of metastasis and high survival rates. Nevertheless, metastatic cSCC is a significant health threat; up to 8800 individuals die each year of this disease. METHODS Because it is difficult to predict which cSCCs are more likely to metastasize, and because to the best of the authors' knowledge there are no targeted therapies specifically designated for patients with metastatic cSCC, exome and/or targeted sequencing of 18 metastatic and 10 primary cSCCs was performed to identify mutations that were more frequent in metastatic tumors and might be targeted for therapeutic benefit. The authors compared their results with published sequencing results of an additional 223 primary tumors and 68 metastatic cSCCs. RESULTS The authors identified genes demonstrating higher mutation frequencies in metastatic cSCC compared with primary tumors, including the chromatin remodeling gene lysine methyltransferase 2D ( KMT2D) and the classic skin tumor suppressor tumor protein p53 ( TP53), which was found to be mutated in 54% of primary tumors compared with 85% of metastatic tumors ( P<.0001). CONCLUSIONS These studies appear to uncover potential pathways that are important in metastatic cSCC and that broaden understanding of the biology contributing to aggressive tumor behavior. These results may lead to new therapeutic strategies. Cancer 2017;123:1184-1193. © 2016 American Cancer Society. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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12. Inhibition of LPS-Induced TLR4 Signaling Products in Murine Macrophages by Phenylmethimazole: An Assay Methodology for Screening Potential Phenylmethimazole Analogs.
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Deosarkar, Sudhir P., Bhatt, Pooja, Gillespie, Jessica, Goetz, Douglas J., and McCall, Kelly D.
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MACROPHAGES ,ENZYME-linked immunosorbent assay ,TOLL-like receptors ,LABORATORY mice ,GENES ,PHYSIOLOGY - Abstract
Preclinical Research Phenylmethimazole (C10) is an inhibitor of Toll ‐ like receptor (TLR3 and TLR4) expression and signaling. In this study, we carried out a detailed investigation of the effect of C10 on TLR4 and its molecular signaling products in RAW 264.7 macrophages using quantitative real ‐ time polymerase chain reaction (PCR), ELISA and cell toxicity assays, a set of in vitro assays that may be used to screen future C10 analogs. C10 exhibited an inhibitory effect on TLR4 MyD88 ‐ dependent and MyD88 ‐ independent pathways. Within the TLR4 pathway, C10 inhibited the expression of cytokines, cytokine receptors, kinases, adapter molecules and transcription factors, suggesting a pathway ‐ wide inhibitory effect. We also found that C10 dose ‐ dependently inhibited the expression of TLR4 signaling products, specifically IL ‐ 6, inducible nitric oxide (NO) synthase and IFNβ. Additionally, pre ‐ treatment of RAW 264.7 cells with C10 resulted in protection from lipopolysaccharide (LPS) insults, suggesting C10 may be bound to the target thus exhibiting activity during/following LPS stimulation. Also, dimethyl sulfoxide, the solvent for C10 exhibited inhibitory effect on TLR4 signaling products independent from the effects of C10. Combined, this study enhances understanding of the actions of action on TLR4 signaling pathway providing a path for the development of new C10 analogs for inhibiting TLR expression and signaling. [ABSTRACT FROM AUTHOR]
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- 2014
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13. The Efficacy of Exercise Therapy in Reducing Shoulder Pain Related to Breast Cancer: A Systematic Review.
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Tatham, Barbara, Smith, Jenna, Cheifetz, Oren, Gillespie, Jessica, Snowden, Katie, Temesy, Jessica, and Vandenberk, Lisa
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BREAST tumor treatment ,LYMPHEDEMA ,SHOULDER pain ,RESEARCH methodology evaluation ,HEALTH outcome assessment ,PAIN measurement ,BREAST tumors ,CINAHL database ,EXERCISE ,EXERCISE physiology ,EXERCISE therapy ,EXPERIMENTAL design ,INFORMATION storage & retrieval systems ,MEDICAL databases ,RANGE of motion of joints ,MEDLINE ,MUSCLE strength ,ONLINE information services ,PHYSICAL therapy ,RESEARCH evaluation ,WOMEN'S health ,SYSTEMATIC reviews ,EVIDENCE-based medicine ,DESCRIPTIVE statistics ,DISEASE complications ,EVALUATION ,PREVENTION - Abstract
Purpose: Recent research indicates that physiotherapy interventions, such as exercise and manual therapy, may be effective in decreasing the frequency of side effects linked with breast cancer treatment, including fatigue, pain, nausea, and decreased quality of life. This systematic review aims to determine the efficacy of exercise therapy in reducing shoulder pain related to breast cancer treatment and to identify outcome measures that can be used to assess shoulder pain in this population. Methods: A systematic review of the current literature was conducted using portals such as the Physiotherapy Evidence Database (PEDro), the Cumulative Index to Nursing and Allied Health Literature (CINAHL), PubMed, Ovid MEDLINE (1996 to April 2011), and Allied and Complementary Medicine (AMED) (1985 to April 2011). Databases were searched for relevant studies published up to April 2011. Participants in relevant studies were adults (≥⃒18 years of age) with a primary diagnosis of breast cancer at any point during the treatment of their disease. Results: Six articles were independently appraised by two blinded reviewers. Six studies met the inclusion criteria, each analyzing different types of exercise-shoulder/arm/scapular strengthening/stabilization, postural exercises, general exercises and conditioning, shoulder range-of-motion exercises, and lymphedema exercises-with respect to their efficacy in reducing shoulder pain related to breast cancer treatment. Conclusions: Results suggest that exercise targeting shoulder pain related to breast cancer treatment may be effective. However, definitive conclusions cannot be drawn due to the lack of methodological quality and homogeneity of the studies included. Clinicians should use valid outcome measures, such as the visual analogue scale and brief pain inventory, to evaluate the effectiveness of this treatment. [ABSTRACT FROM AUTHOR]
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- 2013
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14. Botox Therapy for Ischemic Digits.
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Neumeister, Michael W., Chambers, Christopher B., Herron, Margo S., Webb, Kelli, Wietfeldt, Joel, Gillespie, Jessica N., Bueno Jr, Rueben A., and Cooney, Carisa M.
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- 2009
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15. MECHANISMS OF PLEURODESIS: ANALYSIS AT THE CYTOKINE LEVEL
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Hericks, Anthony J., Gillespie, Jessica, Molteni, Agostino, Quinn, Tim, and Herndon, Betty
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- 2008
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16. Differential mutation frequencies in metastatic cutaneous squamous cell carcinomas versus primary tumors.
- Author
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Yilmaz, Ayse Selen, Ozer, Hatice Gulcin, Gillespie, Jessica L, Allain, Dawn C, Bernhardt, Madison N, Furlan, Karina Colossi, Castro, Leticia T F, Peters, Sara B, Nagarajan, Priyadharsini, Kang, Stephen Y, Iwenofu, O Hans, Olencki, Thomas, Teknos, Theodoros N, and Toland, Amanda Ewart
- Subjects
GENES ,METASTASIS ,GENETIC mutation ,RESEARCH funding ,SKIN tumors ,SQUAMOUS cell carcinoma ,TUMOR classification ,SEQUENCE analysis ,TUMOR grading - Abstract
Background: Exome and targeted sequencing studies have identified potential driver mutations for a variety of tumor types. Cutaneous squamous cell carcinoma (cSCC) is one of the most highly mutated cancers but typically is associated with low rates of metastasis and high survival rates. Nevertheless, metastatic cSCC is a significant health threat; up to 8800 individuals die each year of this disease.Methods: Because it is difficult to predict which cSCCs are more likely to metastasize, and because to the best of the authors' knowledge there are no targeted therapies specifically designated for patients with metastatic cSCC, exome and/or targeted sequencing of 18 metastatic and 10 primary cSCCs was performed to identify mutations that were more frequent in metastatic tumors and might be targeted for therapeutic benefit. The authors compared their results with published sequencing results of an additional 223 primary tumors and 68 metastatic cSCCs.Results: The authors identified genes demonstrating higher mutation frequencies in metastatic cSCC compared with primary tumors, including the chromatin remodeling gene lysine methyltransferase 2D (KMT2D) and the classic skin tumor suppressor tumor protein p53 (TP53), which was found to be mutated in 54% of primary tumors compared with 85% of metastatic tumors (P<.0001).Conclusions: These studies appear to uncover potential pathways that are important in metastatic cSCC and that broaden understanding of the biology contributing to aggressive tumor behavior. These results may lead to new therapeutic strategies. Cancer 2017;123:1184-1193. © 2016 American Cancer Society. [ABSTRACT FROM AUTHOR]- Published
- 2016
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17. Association of ESR1 Germline Variants with TP53 Somatic Variants in Breast Tumors in a Genome-wide Study.
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Tjader NP, Beer AJ, Ramroop J, Tai MC, Ping J, Gandhi T, Dauch C, Neuhausen SL, Ziv E, Sotelo N, Ghanekar S, Meadows O, Paredes M, Gillespie JL, Aeilts AM, Hampel H, Zheng W, Jia G, Hu Q, Wei L, Liu S, Ambrosone CB, Palmer JR, Carpten JD, Yao S, Stevens P, Ho WK, Pan JW, Fadda P, Huo D, Teo SH, McElroy JP, and Toland AE
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- Adult, Female, Humans, Middle Aged, Genetic Predisposition to Disease genetics, Polymorphism, Single Nucleotide, White People genetics, Breast Neoplasms genetics, Breast Neoplasms ethnology, Class I Phosphatidylinositol 3-Kinases genetics, Estrogen Receptor alpha genetics, Genome-Wide Association Study, Germ-Line Mutation, Tumor Suppressor Protein p53 genetics
- Abstract
In breast tumors, somatic mutation frequencies in TP53 and PIK3CA vary by tumor subtype and ancestry. Emerging data suggest tumor mutation status is associated with germline variants and genetic ancestry. We aimed to identify germline variants that are associated with somatic TP53 or PIK3CA mutation status in breast tumors. A genome-wide association study was conducted in 2,850 women of European ancestry with breast cancer using TP53 and PIK3CA mutation status (positive or negative) as well as specific functional categories [e.g., TP53 gain-of-function (GOF) and loss-of-function, PIK3CA activating] as phenotypes. Germline variants showing evidence of association were selected for validation analyses and tested in multiple independent datasets. Discovery association analyses found five variants associated with TP53 mutation status with P values <1 × 10-6 and 33 variants with P values <1 × 10-5. Forty-four variants were associated with PIK3CA mutation status with P values <1 × 10-5. In validation analyses, only variants at the ESR1 locus were associated with TP53 mutation status after multiple comparisons corrections. Combined analyses in European and Malaysian populations found ESR1 locus variants rs9383938 and rs9479090 associated with the presence of TP53 mutations overall (P values 2 × 10-11 and 4.6 × 10-10, respectively). rs9383938 also showed association with TP53 GOF mutations (P value 6.1 × 10-7). rs9479090 showed suggestive evidence (P value 0.02) for association with TP53 mutation status in African ancestry populations. No other variants were significantly associated with TP53 or PIK3CA mutation status. Larger studies are needed to confirm these findings and determine if additional variants contribute to ancestry-specific differences in mutation frequency., Significance: Emerging data show ancestry-specific differences in TP53 and PIK3CA mutation frequency in breast tumors suggesting that germline variants may influence somatic mutational processes. This study identified variants near ESR1 associated with TP53 mutation status and identified additional loci with suggestive association which may provide biological insight into observed differences., (© 2024 The Authors; Published by the American Association for Cancer Research.)
- Published
- 2024
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18. Association of ESR1 germline variants with TP53 somatic variants in breast tumors in a genome-wide study.
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Tjader NP, Beer AJ, Ramroop J, Tai MC, Ping J, Gandhi T, Dauch C, Neuhausen SL, Ziv E, Sotelo N, Ghanekar S, Meadows O, Paredes M, Gillespie J, Aeilts A, Hampel H, Zheng W, Jia G, Hu Q, Wei L, Liu S, Ambrosone CB, Palmer JR, Carpten JD, Yao S, Stevens P, Ho WK, Pan JW, Fadda P, Huo D, Teo SH, McElroy JP, and Toland AE
- Abstract
Background: In breast tumors, somatic mutation frequencies in TP53 and PIK3CA vary by tumor subtype and ancestry. HER2 positive and triple negative breast cancers (TNBC) have a higher frequency of TP53 somatic mutations than other subtypes. PIK3CA mutations are more frequently observed in hormone receptor positive tumors. Emerging data suggest tumor mutation status is associated with germline variants and genetic ancestry. We aimed to identify germline variants that are associated with somatic TP53 or PIK3CA mutation status in breast tumors., Methods: A genome-wide association study was conducted using breast cancer mutation status of TP53 and PIK3CA and functional mutation categories including TP53 gain of function (GOF) and loss of function mutations and PIK3CA activating/hotspot mutations. The discovery analysis consisted of 2850 European ancestry women from three datasets. Germline variants showing evidence of association with somatic mutations were selected for validation analyses based on predicted function, allele frequency, and proximity to known cancer genes or risk loci. Candidate variants were assessed for association with mutation status in a multi-ancestry validation study, a Malaysian study, and a study of African American/Black women with TNBC., Results: The discovery Germline x Mutation (GxM) association study found five variants associated with one or more TP53 phenotypes with P values <1×10
-6 , 33 variants associated with one or more TP53 phenotypes with P values <1×10-5 , and 44 variants associated with one or more PIK3CA phenotypes with P values <1×10-5 . In the multi-ancestry and Malaysian validation studies, germline ESR1 locus variant, rs9383938, was associated with the presence of TP53 mutations overall ( P values 6.8×10-5 and 9.8×10-8 , respectively) and TP53 GOF mutations ( P value 8.4×10-6 ). Multiple variants showed suggestive evidence of association with PIK3CA mutation status in the validation studies, but none were significant after correction for multiple comparisons., Conclusions: We found evidence that germline variants were associated with TP53 and PIK3CA mutation status in breast cancers. Variants near the estrogen receptor alpha gene, ESR1, were significantly associated with overall TP53 mutations and GOF mutations. Larger multi-ancestry studies are needed to confirm these findings and determine if these variants contribute to ancestry-specific differences in mutation frequency., Competing Interests: CONFLICTS OF INTEREST HH is on the scientific advisory board for Invitae Genetics, Promega, and Genome Medical and has stock/stock options in Genome Medical and GI OnDemand. None of these are direct conflicts with this study.- Published
- 2023
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19. Rare BRIP1 Missense Alleles Confer Risk for Ovarian and Breast Cancer.
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Moyer CL, Ivanovich J, Gillespie JL, Doberstein R, Radke MR, Richardson ME, Kaufmann SH, Swisher EM, and Goodfellow PJ
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- Adult, Age of Onset, Aged, Alleles, Breast Neoplasms blood, Breast Neoplasms diagnosis, Cohort Studies, DNA Mutational Analysis, Datasets as Topic, Female, Gene Frequency, Genetic Testing, Germ-Line Mutation, HeLa Cells, High-Throughput Nucleotide Sequencing, Humans, Loss of Function Mutation, Middle Aged, Mutation, Missense, Ovarian Neoplasms blood, Ovarian Neoplasms diagnosis, Breast Neoplasms genetics, Fanconi Anemia Complementation Group Proteins genetics, Genetic Predisposition to Disease, Ovarian Neoplasms genetics, RNA Helicases genetics
- Abstract
Germline loss-of-function mutations in BRCA1 interacting protein C-terminal helicase 1 (BRIP1) are associated with ovarian carcinoma and may also contribute to breast cancer risk, particularly among patients who develop disease at an early age. Normal BRIP1 activity is required for DNA interstrand cross-link (ICL) repair and is thus central to the maintenance of genome stability. Although pathogenic mutations have been identified in BRIP1 , genetic testing more often reveals missense variants, for which the impact on molecular function and subsequent roles in cancer risk are uncertain. Next-generation sequencing of germline DNA in 2,160 early-onset breast cancer and 1,199 patients with ovarian cancer revealed nearly 2% of patients carry a very rare missense variant (minor allele frequency < 0.0001) in BRIP1 . This is 3-fold higher than the frequency of all rare BRIP1 missense alleles reported in more than 60,000 individuals of the general population ( P < 0.0001, χ
2 test). Using CRISPR-Cas9 gene editing technology and rescue assays, we functionally characterized 20 of these missense variants, focusing on the altered protein's ability to repair ICL damage. A total of 75% of the characterized variants rendered the protein hypomorph or null. In a clinical cohort of >117,000 patients with breast and ovarian cancer who underwent panel testing, the combined OR associated with BRIP1 hypomorph or null missense carriers compared with the general population was 2.30 (95% confidence interval, 1.60-3.30; P < 0.0001). These findings suggest that novel missense variants within the helicase domain of BRIP1 may confer risk for both breast and ovarian cancer and highlight the importance of functional testing for additional variants. SIGNIFICANCE: Functional characterization of rare variants of uncertain significance in BRIP1 revealed that 75% demonstrate loss-of-function activity, suggesting rare missense alleles in BRIP1 confer risk for both breast and ovarian cancer., (©2019 American Association for Cancer Research.)- Published
- 2020
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20. MAX Mutations in Endometrial Cancer: Clinicopathologic Associations and Recurrent MAX p.His28Arg Functional Characterization.
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Walker CJ, Rush CM, Dama P, O'Hern MJ, Cosgrove CM, Gillespie JL, Zingarelli RA, Smith B, Stein ME, Mutch DG, Shakya R, Chang CW, Selvendiran K, Song JW, Cohn DE, and Goodfellow PJ
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- Aged, Aged, 80 and over, Amino Acid Substitution genetics, Animals, Animals, Outbred Strains, Arginine genetics, Carcinoma, Endometrioid epidemiology, Carcinoma, Endometrioid pathology, Cells, Cultured, Endometrial Neoplasms epidemiology, Endometrial Neoplasms pathology, Female, Genetic Association Studies, Genetic Predisposition to Disease, HEK293 Cells, Histidine genetics, Humans, Mice, Mice, Nude, Middle Aged, Neoplasm Invasiveness, Neovascularization, Pathologic genetics, Neovascularization, Pathologic pathology, Basic Helix-Loop-Helix Leucine Zipper Transcription Factors genetics, Carcinoma, Endometrioid genetics, Codon, Nonsense, Endometrial Neoplasms genetics
- Abstract
Background: Genomic studies have revealed that multiple genes are mutated at varying frequency in endometrial cancer (EC); however, the relevance of many of these mutations is poorly understood. An EC-specific recurrent mutation in the MAX transcription factor p.His28Arg was recently discovered. We sought to assess the functional consequences of this hotspot mutation and determine its association with cancer-relevant phenotypes., Methods: MAX was sequenced in 509 endometrioid ECs, and associations between mutation status and clinicopathologic features were assessed. EC cell lines stably expressing MAXH28R were established and used for functional experiments. DNA binding was examined using electrophoretic mobility shift assays and chromatin immunoprecipitation. Transcriptional profiling was performed with microarrays. Murine flank (six to 11 mice per group) and intraperitoneal tumor models were used for in vivo studies. Vascularity of xenografts was assessed by MECA-32 immunohistochemistry. The paracrine pro-angiogenic nature of MAXH28R-expressing EC cells was tested using microfluidic HUVEC sprouting assays and VEGFA enzyme-linked immunosorbent assays. All statistical tests were two-sided., Results: Twenty-two of 509 tumors harbored mutations in MAX, including 12 tumors with the p.His28Arg mutation. Patients with a MAX mutation had statistically significantly reduced recurrence-free survival (hazard ratio = 4.00, 95% confidence interval = 1.15 to 13.91, P = .03). MAXH28R increased affinity for canonical E-box sequences, and MAXH28R-expressing EC cells dramatically altered transcriptional profiles. MAXH28R-derived xenografts statistically significantly increased vascular area compared with MAXWT and empty vector tumors (P = .003 and P = .008, respectively). MAXH28R-expressing EC cells secreted nearly double the levels of VEGFA compared with MAXWT cells (P = .03, .005, and .005 at 24, 48, and 72 hours, respectively), and conditioned media from MAXH28R cells increased sprouting when applied to HUVECs., Conclusion: These data highlight the importance of MAX mutations in EC and point to increased vascularity as one mechanism contributing to clinical aggressiveness of EC.
- Published
- 2018
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21. Differential expression of miR-1, a putative tumor suppressing microRNA, in cancer resistant and cancer susceptible mice.
- Author
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Fleming JL, Gable DL, Samadzadeh-Tarighat S, Cheng L, Yu L, Gillespie JL, and Toland AE
- Abstract
Mus spretus mice are highly resistant to several types of cancer compared to Mus musculus mice. To determine whether differences in microRNA (miRNA) expression account for some of the differences in observed skin cancer susceptibility between the strains, we performed miRNA expression profiling of skin RNA for over 300 miRNAs. Five miRNAs, miR-1, miR-124a-3, miR-133a, miR-134, miR-206, were differentially expressed by array and/or qPCR. miR-1 was previously shown to have tumor suppressing abilities in multiple tumor types. We found miR-1 expression to be lower in mouse cutaneous squamous cell carcinomas (cSCCs) compared to normal skin. Based on the literature and our expression data, we performed detailed studies on predicted miR-1 targets and evaluated the effect of miR-1 expression on two murine cSCC cell lines, A5 and B9. Following transfection of miR-1, we found decreased mRNA expression of three validated miR-1 targets, Met, Twf1 and Ets1 and one novel target Bag4. Decreased expression of Ets1 was confirmed by Western analysis and by 3' reporter luciferase assays containing wildtype and mutated Ets1 3'UTR. We evaluated the effect of miR-1 on multiple tumor phenotypes including apoptosis, proliferation, cell cycle and migration. In A5 cells, expression of miR-1 led to decreased proliferation compared to a control miR. miR-1 expression also led to increased apoptosis at later time points (72 and 96 h) and to a decrease in cells in S-phase. In summary, we identified five miRNAs with differential expression between cancer resistant and cancer susceptible mice and found that miR-1, a candidate tumor suppressor, has targets with defined roles in tumorigenesis.
- Published
- 2013
- Full Text
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