30 results on '"Gómez-Chiarri M"'
Search Results
2. Identification of potential markers of disease resistance in eastern oysters (Crassostrea virginica) by deep analysis of the transcriptome: O-427
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Nikapitiya, C., McDowell, I., Sohn, S. B., and Gómez-Chiarri, M.
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- 2013
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3. Molecular cloning, sequencing and characterization of omp48, the gene encoding for an antigenic outer membrane protein from Aeromonas veronii
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Vázquez-Juárez, R. C., Barrera-Saldaña, H. A., Hernández-Saavedra, N. Y., Gómez-Chiarri, M., and Ascencio, F.
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- 2003
4. Fibronectin (FN) decreases glomerular lesions and synthesis of tumour necrosis factor-alpha (TNF-α), platelet-activating factor (PAF) and FN in proliferative glomerulonephritis.
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Ortíz, A., Alonso, J., Gómez-Chiarri, M., Lerma, J. L., Seron, D., Condom, E., González, E., and Egido, J.
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CONNECTIVE tissues ,KIDNEY diseases ,EXTRACELLULAR matrix ,LEUCOCYTES ,FIBRONECTINS ,GLYCOPROTEINS - Abstract
We have studied the effect of therapy with plasma FN on glomerular synthesis of PAF, TNF - α and FN, in experimental proliferative glomerulonephritis. Glomerular PAF. TNF- α and FN production were increased in rats with nephritis. Peak glomerular PAF production preceded, while peak glomerular TNF-α bioactivity coincided with maximal proteinuria. Rats treated with FN (5 mg/kg per 48 h) for 15 days had less proteinuria, glomerular and interstitial cell infiltration and glomerular PAF. TNF-α and FN synthesis than non-treated rats. In order to characterize further the mechanisms of action of FN. healthy rats were injected with either FN or saline. Peripheral blood mononuclear cells and neutrophils from healthy rats injected with FN secreted less TNF-α and PAF, respectively, than those obtained from saline-treated rats. Our data suggest that the beneficial effect of FN may be related to decreased number of glomerular leucocytes and decreased synthesis of inflammatory mediators and extracellular matrix. [ABSTRACT FROM AUTHOR]
- Published
- 1995
5. Functional plasticity in oyster gut microbiomes along a eutrophication gradient in an urbanized estuary.
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Stevick RJ, Post AF, and Gómez-Chiarri M
- Abstract
Background: Oysters in coastal environments are subject to fluctuating environmental conditions that may impact the ecosystem services they provide. Oyster-associated microbiomes are responsible for some of these services, particularly nutrient cycling in benthic habitats. The effects of climate change on host-associated microbiome composition are well-known, but functional changes and how they may impact host physiology and ecosystem functioning are poorly characterized. We investigated how environmental parameters affect oyster-associated microbial community structure and function along a trophic gradient in Narragansett Bay, Rhode Island, USA. Adult eastern oyster, Crassostrea virginica, gut and seawater samples were collected at 5 sites along this estuarine nutrient gradient in August 2017. Samples were analyzed by 16S rRNA gene sequencing to characterize bacterial community structures and metatranscriptomes were sequenced to determine oyster gut microbiome responses to local environments., Results: There were significant differences in bacterial community structure between the eastern oyster gut and water samples, suggesting selection of certain taxa by the oyster host. Increasing salinity, pH, and dissolved oxygen, and decreasing nitrate, nitrite and phosphate concentrations were observed along the North to South gradient. Transcriptionally active bacterial taxa were similar for the different sites, but expression of oyster-associated microbial genes involved in nutrient (nitrogen and phosphorus) cycling varied throughout the Bay, reflecting the local nutrient regimes and prevailing environmental conditions., Conclusions: The observed shifts in microbial community composition and function inform how estuarine conditions affect host-associated microbiomes and their ecosystem services. As the effects of estuarine acidification are expected to increase due to the combined effects of eutrophication, coastal pollution, and climate change, it is important to determine relationships between host health, microbial community structure, and environmental conditions in benthic communities.
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- 2021
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6. Bacterial Community Dynamics in an Oyster Hatchery in Response to Probiotic Treatment.
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Stevick RJ, Sohn S, Modak TH, Nelson DR, Rowley DC, Tammi K, Smolowitz R, Markey Lundgren K, Post AF, and Gómez-Chiarri M
- Abstract
Larval oysters in hatcheries are susceptible to diseases caused by bacterial pathogens, including Vibrio spp. Previous studies have shown that daily addition of the probiotic Bacillus pumilus RI06-95 to water in rearing tanks increases larval survival when challenged with the pathogen Vibrio coralliilyticus . We propose that the presence of probiotics causes shifts in bacterial community structure in rearing tanks, leading to a net decrease in the relative abundance of potential pathogens. During three trials spanning the 2012-2015 hatchery seasons, larvae, tank biofilm, and rearing water samples were collected from control and probiotic-treated tanks in an oyster hatchery over a 12-day period after spawning. Samples were analyzed by 16S rRNA sequencing of the V4 or V6 regions followed by taxonomic classification, in order to determine bacterial community structures. There were significant differences in bacterial composition over time and between sample types, but no major effect of probiotics on the structure and diversity of bacterial communities (phylum level, Bray-Curtis k = 2, 95% confidence). Probiotic treatment, however, led to a higher relative percent abundance of Oceanospirillales and Bacillus spp. in water and oyster larvae. In the water, an increase in Vibrio spp. diversity in the absence of a net increase in relative read abundance suggests a likely decrease in the abundance of specific pathogenic Vibrio spp., and therefore lower chances of a disease outbreak. Co-occurrence network analysis also suggests that probiotic treatment had a systemic effect on targeted members of the bacterial community, leading to a net decrease in potentially pathogenic species.
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- 2019
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7. From the raw bar to the bench: Bivalves as models for human health.
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Fernández Robledo JA, Yadavalli R, Allam B, Pales Espinosa E, Gerdol M, Greco S, Stevick RJ, Gómez-Chiarri M, Zhang Y, Heil CA, Tracy AN, Bishop-Bailey D, and Metzger MJ
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- Animals, Cell Differentiation, Humans, Immunity, Innate, Models, Animal, Seafood, Animal Shells physiology, Bivalvia immunology, Microbiota immunology, Stem Cells physiology
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Bivalves, from raw oysters to steamed clams, are popular choices among seafood lovers and once limited to the coastal areas. The rapid growth of the aquaculture industry and improvement in the preservation and transport of seafood have enabled them to be readily available anywhere in the world. Over the years, oysters, mussels, scallops, and clams have been the focus of research for improving the production, managing resources, and investigating basic biological and ecological questions. During this decade, an impressive amount of information using high-throughput genomic, transcriptomic and proteomic technologies has been produced in various classes of the Mollusca group, and it is anticipated that basic and applied research will significantly benefit from this resource. One aspect that is also taking momentum is the use of bivalves as a model system for human health. In this review, we highlight some of the aspects of the biology of bivalves that have direct implications in human health including the shell formation, stem cells and cell differentiation, the ability to fight opportunistic and specific pathogens in the absence of adaptive immunity, as source of alternative drugs, mucosal immunity and, microbiome turnover, toxicology, and cancer research. There is still a long way to go; however, the next time you order a dozen oysters at your favorite raw bar, think about a tasty model organism that will not only please your palate but also help unlock multiple aspects of molluscan biology and improve human health., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
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- 2019
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8. The use of -omic tools in the study of disease processes in marine bivalve mollusks.
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Gómez-Chiarri M, Guo X, Tanguy A, He Y, and Proestou D
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- Animals, Bivalvia genetics, Genomics, Host-Pathogen Interactions physiology, Proteomics
- Abstract
Our understanding of disease processes and host-pathogen interactions in model species has benefited greatly from the application of medium and high-throughput genomic, metagenomic, epigenomic, transcriptomic, and proteomic analyses. The rate at which new, low-cost, high-throughput -omic technologies are being developed has also led to an expansion in the number of studies aimed at gaining a better understanding of disease processes in bivalves. This review provides a catalogue of the genetic and -omic tools available for bivalve species and examples of how -omics has contributed to the advancement of marine bivalve disease research, with a special focus in the areas of immunity, bivalve-pathogen interactions, mechanisms of disease resistance and pathogen virulence, and disease diagnosis. The analysis of bivalve genomes and transcriptomes has revealed that many immune and stress-related gene families are expanded in the bivalve taxa examined thus far. In addition, the analysis of proteomes confirms that responses to infection are influenced by epigenetic, post-transcriptional, and post-translational modifications. The few studies performed in bivalves show that epigenetic modifications are non-random, suggesting a role for epigenetics in regulating the interactions between bivalves and their environments. Despite the progress -omic tools have enabled in the field of marine bivalve disease processes, there is much more work to be done. To date, only three bivalve genomes have been sequenced completely, with assembly status at different levels of completion. Transcriptome datasets are relatively easy and inexpensive to generate, but their interpretation will benefit greatly from high quality genome assemblies and improved data analysis pipelines. Finally, metagenomic, epigenomic, proteomic, and metabolomic studies focused on bivalve disease processes are currently limited but their expansion should be facilitated as more transcriptome datasets and complete genome sequences become available for marine bivalve species., (Copyright © 2015 Elsevier Inc. All rights reserved.)
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- 2015
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9. Developing tools for the study of molluscan immunity: The sequencing of the genome of the eastern oyster, Crassostrea virginica.
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Gómez-Chiarri M, Warren WC, Guo X, and Proestou D
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- Animals, Aquaculture, Genomics, Sequence Analysis, DNA, Crassostrea genetics, Crassostrea immunology, Genome, Transcriptome
- Abstract
The eastern oyster, Crassostrea virginica, provides important ecological and economical services, making it the target of restoration projects and supporting a significant fishery/aquaculture industry with landings valued at more than $100 million in 2012 in the United States of America. Due to the impact of infectious diseases on wild, restored, and cultured populations, the eastern oyster has been the focus of studies on host-pathogen interactions and immunity, as well as the target of selective breeding efforts for disease resistant oyster lines. Despite these efforts, relatively little is known about the genetic basis of resistance to diseases or environmental stress, not only in eastern oyster, but also in other molluscan species of commercial interest worldwide. In order to develop tools and resources to assist in the elucidation of the genomic basis of traits of commercial, biological, and ecological interest in oysters, a team of genome and bioinformatics experts, in collaboration with the oyster research community, is sequencing, assembling, and annotating the first reference genome for the eastern oyster and producing an exhaustive transcriptome from a variety of oyster developmental stages and tissues in response to a diverse set of environmentally-relevant stimuli. These transcriptomes and reference genome for the eastern oyster, added to the already available genome and transcriptomes for the Pacific oyster (Crassostrea gigas) and other bivalve species, will be an essential resource for the discovery of candidate genes and markers associated with traits of commercial, biological, and ecologic importance in bivalve molluscs, including those related to host-pathogen interactions and immunity., (Copyright © 2015 Elsevier Ltd. All rights reserved.)
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- 2015
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10. Upregulation in response to infection and antibacterial activity of oyster histone H4.
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Dorrington T, Villamil L, and Gómez-chiarri M
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- Amino Acid Sequence, Animals, Artemia, Base Sequence, Molecular Sequence Data, Ostreidae genetics, Saccharomyces cerevisiae metabolism, Vibrio immunology, Anti-Bacterial Agents pharmacology, Histones metabolism, Histones pharmacology, Ostreidae metabolism, Up-Regulation
- Abstract
Several histones and histone-derived peptides have been shown to have antimicrobial activity and a potential role in innate immune defenses. A histone H4 sequence was identified in a subtractive suppression library containing genes upregulated in American cupped oysters, Crassostrea virginica, in response to challenge with the protozoan parasite Perkinsus marinus. Oyster histone H4 protein levels significantly increased in hemocyte lysates and cell free hemolymph of oysters experimentally challenged with P. marinus. The complete histone H4 coding sequence of C. virginica was cloned into a Saccharomyces cerevisiae yeast expression system and recombinant expression was confirmed using SDS-PAGE analysis and western blot. Delivery of yeast cells expressing recombinant oyster histone H4 into the gut of brine shrimp, Artemia salinas, challenged with a streptomycin resistant strain of Vibrio anguillarum resulted in a significant and dose-dependent decrease in the load of V. anguillarum. Purified recombinant histone H4 showed antimicrobial activity against V. anguillarum and Escherichia coli at micromolar concentrations, but did not affect the viability of P. marinus in culture. These results support the role of histone H4 in the defense of oysters against bacterial infection and validate the use of a novel oyster antimicrobial H4 in a yeast feed-based delivery system for the treatment of bacterial infections in aquaculture applications., (Copyright © 2010 Elsevier Ltd. All rights reserved.)
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- 2011
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11. Survival of eastern oysters Crassostrea virginica from three lines following experimental challenge with bacterial pathogens.
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Gómez-León J, Villamill L, Salger SA, Sallum RH, Remacha-Triviño A, Leavitt DF, and Gómez-Chiarri M
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- Animals, Crassostrea classification, Crassostrea growth & development, Hemocytes microbiology, Larva microbiology, Survival Analysis, Temperature, Time Factors, Crassostrea microbiology, Crassostrea physiology, Vibrio physiology
- Abstract
Shellfish production is often affected by bacterial pathogens that cause high losses in hatcheries and nurseries. We evaluated the relative survival of larvae and juveniles of 3 Crassostrea virginica oyster lines: (1) GHP, a Rhode Island line; (2) NEHY, a line resistant to dermo and multinucleated sphere X diseases; and (3) FLOWERS, a line resistant to Roseovarius oyster disease, experimental challenge with Vibrio spp. isolates RE22 and RE101, causative agents of bacillary necrosis in Pacific oyster larvae, and the type strain of Roseovarius crassostreae, causative agent of Roseovarius oyster disease. All of the isolates were able to induce significant mortalities in oyster larvae and juveniles. Susceptibility to bacterial challenge in larvae was significantly higher at 25 degrees C than at 20 degrees C. Susceptibility decreased with oyster age; mean survival time ranged from 24 h in oyster larvae to more than 6 wk in juveniles. Significant differences in susceptibility to bacterial challenge were observed between oyster lines; NEHY was the most resistant line overall. Extracellular products (ECPs) from Vibrio sp. RE22 and R. crassostreae, as well as viable bacteria, were toxic to hemocytes from the 3 oyster lines, suggesting that ECPs are involved in pathogenesis and that external and mucosal barriers to infection are major contributors to resistance to bacterial challenge. These protocols will be useful in the elucidation of mechanisms of bacterial pathogenesis and resistance to infection in oysters.
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- 2008
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12. Numerical quantification of Perkinsus marinus in the American oyster Crassostrea virginica (Gmelin, 1791) (Mollusca: Bivalvia) by modern stereology.
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Remacha-Triviño A, Borsay-Horowitz D, Dungan C, Gual-Arnau X, Gómez-Leon J, Villamil L, and Gómez-Chiarri M
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- Animals, Eukaryota isolation & purification, Immunohistochemistry, Linear Models, Models, Biological, Crassostrea parasitology, Eukaryota growth & development
- Abstract
Species of Perkinsus are responsible for high mortalities of bivalve molluscs world-wide. Techniques to accurately estimate parasites in tissues are required to improve understanding of perkinsosis. This study quantifies the number and tissue distribution of Perkinsus marinus in Crassostrea virginica by modern stereology and immunohistochemistry. Mean total number of trophozoites were (mean +/- SE) 11.80 +/- 3.91 million and 11.55 +/- 3.88 million for the optical disector and optical fractionator methods, respectively. The mean empirical error between both stereological approaches was 3.8 +/- 1.0%. Trophozoites were detected intracellularly in the following tissues: intestine (30.1%), Leydig tissue (21.3%), hemocytes (14.9%), digestive gland (11.4%), gills (6.1%), connective tissues (5.7%), gonads (4.1%), palps (2.2%), muscle (1.9%), mantle connective (0.8%), pericardium (0.7%), mantle epithelium (0.1%), and heart (0.1%). The remaining 0.6% were found extracellularly. Percentages of trophozoite stages were (mean +/- SE): large, log-phase trophonts, i.e., signet rings, 97.0 +/- 1.2%; meronts, 2.0 +/- 0.9%; clusters of small, log-phase trophonts, i.e., merozoites, 1.0 +/- 0.5%. Levels of infection in hemocytes and Leydig tissue were representative of total parasite intensity. These techniques are a powerful tool to follow parasite distribution and invasion, and to further explore mechanisms of Perkinsus spp. pathogenesis in bivalves.
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- 2008
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13. Fundulus as the premier teleost model in environmental biology: opportunities for new insights using genomics.
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Burnett KG, Bain LJ, Baldwin WS, Callard GV, Cohen S, Di Giulio RT, Evans DH, Gómez-Chiarri M, Hahn ME, Hoover CA, Karchner SI, Katoh F, Maclatchy DL, Marshall WS, Meyer JN, Nacci DE, Oleksiak MF, Rees BB, Singer TD, Stegeman JJ, Towle DW, Van Veld PA, Vogelbein WK, Whitehead A, Winn RN, and Crawford DL
- Abstract
A strong foundation of basic and applied research documents that the estuarine fish Fundulus heteroclitus and related species are unique laboratory and field models for understanding how individuals and populations interact with their environment. In this paper we summarize an extensive body of work examining the adaptive responses of Fundulus species to environmental conditions, and describe how this research has contributed importantly to our understanding of physiology, gene regulation, toxicology, and ecological and evolutionary genetics of teleosts and other vertebrates. These explorations have reached a critical juncture at which advancement is hindered by the lack of genomic resources for these species. We suggest that a more complete genomics toolbox for F. heteroclitus and related species will permit researchers to exploit the power of this model organism to rapidly advance our understanding of fundamental biological and pathological mechanisms among vertebrates, as well as ecological strategies and evolutionary processes common to all living organisms.
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- 2007
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14. Role of nitric oxide in the defenses of Crassostrea virginica to experimental infection with the protozoan parasite Perkinsus marinus.
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Villamil L, Gómez-León J, and Gómez-Chiarri M
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- Animals, Crassostrea metabolism, Nitric Oxide antagonists & inhibitors, Crassostrea immunology, Crassostrea parasitology, Dinoflagellida immunology, Nitric Oxide physiology, Protozoan Infections immunology, Protozoan Infections metabolism
- Abstract
We investigated the role of nitric oxide (NO) in the responses of the Eastern oyster, Crassostrea virginica, to the protozoan parasite Perkinsus marinus, causative agent of Dermo disease. P. marinus induced a slight but significant increase in NO production by oyster hemocytes in vitro, comparable to the increase induced by the immune stimulants phorbol myristrate acetate (PMA) and lipopolysaccharide (LPS). P. marinus also activated the NO response in oysters in vivo, as shown by induction of a protein reacting with a universal NO synthase (NOS) antibody in hemocytes and the presence of high levels of nitrite in plasma. Treatment of experimentally infected oysters with the NOS inhibitor, Nomega-nitro-L-arginine methyl ester (L-NAME) resulted in a transient decrease in NO levels in oyster plasma and a significant increase in the number of parasites at early time points after infection. The NO donor, S-nitroso-N-acetyl-penicillamine (SNAP) caused a significant inhibition in the proliferation of P. marinus cultured cells after 24 h of incubation. These results indicate that NO has a role in decreasing parasite loads at early time points after infection.
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- 2007
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15. The major Aeromonas veronii outer membrane protein: gene cloning and sequence analysis.
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Vázquez-Juárez RC, Gómez-Chiarri M, Barrera-Saldaña H, Hernández N, and Ascencio F
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- Amino Acid Sequence, Bacterial Outer Membrane Proteins chemistry, Base Sequence, Binding Sites, Cloning, Molecular, Cysteine genetics, DNA, Bacterial chemistry, DNA, Bacterial genetics, Hydrophobic and Hydrophilic Interactions, Isoelectric Point, Models, Molecular, Molecular Sequence Data, Molecular Weight, Open Reading Frames, Phenylalanine genetics, Phylogeny, Porins genetics, Proline genetics, Protein Sorting Signals, Protein Structure, Secondary, Sequence Analysis, Sequence Homology, Amino Acid, Aeromonas genetics, Bacterial Outer Membrane Proteins genetics
- Abstract
The gene encoding the major outer membrane protein (OMP) from Aeromonas veronii, Omp38, was cloned and characterized. Sequence analysis revealed an open reading frame of 1,047 nucleotides coding for a primary protein of 349 amino acids with a 20-amino-acid signal peptide at the N-terminal and the consensus sequence Ala-X-Ala (Ala-Asn-Ala) as the signal peptidase I recognition site. The mature protein is composed of 329 amino acids with a calculated molecular mass of 36,327 Da. The degree of identity of the deduced Omp38 amino acid sequence to porins from enteric bacteria (OmpF, PhoE, and OmpC) was only 30%. Nevertheless, Omp38 possesses typical features of Gram-negative porins, including acidic pI, high glycine and low proline content, no cysteine residues, and a carboxy-terminal Phe. On the basis of PhoE-OmpF three-dimensional structure and the Kyte-Doolittle hydrophobicity analysis, it seems likely that Omp38 secondary structure consists of 16 antiparallel beta-strands and 8 loops. Phylogenetic analyses among Omp38 and related porins from Gram-negative bacteria originate well-defined clusters that agree with the taxonomy of the corresponding organisms.
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- 2005
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16. 16S ribosomal DNA sequencing confirms the synonymy of Vibrio harveyi and V. carchariae.
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Gauger EJ and Gómez-Chiarri M
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- Animals, Bacterial Typing Techniques, Base Sequence, Cluster Analysis, Fishes, Molecular Sequence Data, Phylogeny, Sequence Alignment veterinary, Sequence Analysis, DNA, Sequence Homology, Shellfish, Vibrio isolation & purification, DNA, Ribosomal chemistry, RNA, Ribosomal, 16S genetics, Vibrio classification, Vibrio genetics
- Abstract
Seventeen bacterial strains previously identified as Vibrio harveyi (Baumann et al. 1981) or V. carchariae (Grimes et al. 1984) and the type strains of V. harveyi, V. carchariae and V. campbellii were analyzed by 16S ribosomal DNA (rDNA) sequencing. Four clusters were identified in a phylogenetic analysis performed by comparing a 746 base pair fragment of the 16S rDNA and previously published sequences of other closely related Vibrio species. The type strains of V. harveyi and V. carchariae and about half of the strains identified as V. harveyi or V. carchariae formed a single, well-supported cluster designed as 'bona fide' V. harveyi/carchariae. A second more heterogeneous cluster included most other strains and the V. campbellii type strain. Two remaining strains are shown to be more closely related to V. rumoiensis and V. mediterranei. 16S rDNA sequencing has confirmed the homogeneity and synonymy of V. harveyi and V. carchariae. Analysis of API20E biochemical profiles revealed that they are insufficient by themselves to differentiate V. harveyi and V. campbellii strains. 16S rDNA sequencing, however, can be used in conjunction with biochemical techniques to provide a reliable method of distinguishing V. harveyi from other closely related species.
- Published
- 2002
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17. Infectious necrotizing enteritis and mortality caused by Vibrio carchariae in summer flounder Paralichthys dentatus during intensive culture.
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Soffientino B, Gwaltney T, Nelson DR, Specker JL, Mauel M, and Gómez-Chiarri M
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- Abdomen pathology, Anal Canal pathology, Animals, Aquaculture, Base Sequence, DNA Primers chemistry, DNA, Bacterial chemistry, DNA, Bacterial isolation & purification, Disease Outbreaks veterinary, Enteritis microbiology, Enteritis pathology, Fish Diseases mortality, Fish Diseases pathology, Intestines pathology, Lethal Dose 50, Molecular Sequence Data, Necrosis, Phylogeny, Polymerase Chain Reaction veterinary, Rhode Island, Sequence Alignment, Sequence Homology, Nucleic Acid, Vibrio chemistry, Vibrio genetics, Vibrio Infections mortality, Vibrio Infections pathology, Enteritis veterinary, Fish Diseases microbiology, Flounder, Vibrio isolation & purification, Vibrio Infections veterinary
- Abstract
An epizootic causing mortality among cultured summer flounder Paralichthys dentatus occurred in summer of 1998 at a land-based facility on Narragansett Bay, Rhode Island, USA. The disease, flounder infectious necrotizing enteritis (FINE), was characterized by reddening around the anal area, distended abdomens filled with opaque serosanguineous fluid, enteritis and necrosis of the posterior intestine. In extreme cases of the disease, the posterior intestine was detached from the anus and was observed coming out the vent. The intestine of individuals that recovered from the disease ended in a blind-sac; the abdomens of these fish were distended, due to food and water inside the intestinal blind-sac. A bacterium was isolated from ascites fluid and kidney of moribund flounder and identified as the causative agent in challenge experiments. The pathogen was identified as Vibrio carchariae by morphological and biochemical characteristics and sequence of the 16S rRNA. The LD50 estimate was 5 x 10(5) colony-forming units injected intraperitoneally into 100 to 200 g summer flounder.
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- 1999
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18. Evaluation of eukaryotic promoters for the construction of DNA vaccines for aquaculture.
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Gómez-Chiarri M and Chiaverini LA
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- Actins genetics, Animals, Carps genetics, Cytomegalovirus genetics, DNA, Recombinant administration & dosage, DNA, Recombinant genetics, Fish Diseases prevention & control, Fisheries methods, Genes, Reporter, Genes, Viral, Luciferases biosynthesis, Luciferases genetics, Recombinant Fusion Proteins biosynthesis, Recombinant Fusion Proteins genetics, Salmo salar genetics, Thymidine Kinase genetics, Viral Proteins genetics, Aquaculture methods, Immunization veterinary, Promoter Regions, Genetic, Salmo salar metabolism, Vaccines, DNA, Vertebrates genetics
- Abstract
We evaluated fish promoters as an alternative to viral promoters in the construction of DNA vaccines for aquaculture. A carp beta-actin promoter drove expression of the luciferase gene in live fish tissue to levels comparable to the CMVtk promoter.
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- 1999
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19. Isolation and Characterization of an Actin Promoter from the Red Abalone (Haliotis rufescens).
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Gómez-Chiarri M, Kirby VL, and Powers DA
- Abstract
: We have isolated and characterized the 5'-flanking and part of the coding region of an actin gene from the red abalone Haliotis rufescens. There is high sequence homology between the abalone actin coding region and actins from other species. The sequence of this abalone actin is more closely related to vertebrate cytoplasmic actins than to muscle actins. RNase protection assays located the position of the transcription start point 66 bp upstream of the initiation codon. Promoter prediction by neural network located a TATA box 30 bp upstream of the transcription start point. A search with the SIGNAL SCAN program identified several potential transcription factor binding sites in the abalone sequence. These sites include sequences highly conserved in other actin promoters, like several putative CAAT and E boxes and a modified CArG box. Transfection assays with a construct containing the 5' flanking region of the abalone actin coupled to a luciferase reporter gene showed that the promoter is functional in mammalian and fish cell lines, as well as in abalone gonad tissue. Expression vectors constructed with the abalone actin promoter will be useful for gene transfer studies into abalone and other mollusks.
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- 1999
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20. Structural and functional differences in the promoter and 5' flanking region of Ldh-B within and between populations of the teleost Fundulus heteroclitus.
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Schulte PM, Gómez-Chiarri M, and Powers DA
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- Animals, Base Sequence, Genes, Molecular Sequence Data, Phylogeny, Recombination, Genetic, Sequence Homology, Nucleic Acid, Fishes genetics, L-Lactate Dehydrogenase genetics, Promoter Regions, Genetic
- Abstract
We have investigated the mechanisms underlying differences in the transcriptional regulation of lactate dehydrogenase-B (Ldh-B) between northern and southern populations of a teleost fish, Fundulus heteroclitus. A 1-kb region immediately 5' of the gene was sequenced from populations throughout the species range. There were two major allele classes in the sample, one containing alleles from Maine and another containing those from Florida. Populations from intermediate localities contained both allele classes. Some individuals from Georgia had sequences intermediate between the two classes, representing either ancestral alleles or recombinants. Tests of neutrality were applied to determine whether observed variation was consistent with neutral expectations. Significant deviations from neutral expectations were detected for the 5' flanking region, but not for other loci. The functional consequences of flanking sequence variation were assessed by transfection of reporter gene constructs into cultured cells and injection into living fish. Consistent with observed variation in Ldh-B transcription rate between populations, significant differences in reporter gene activity were driven by flanking regions from northern and southern populations both in cell culture and in vivo. This functional differentiation, coupled with departures from neutral expectations, suggests that selection may have acted on the regulation of Ldh-B in F. heteroclitus.
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- 1997
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21. Glomerular up-regulation of EIIIA and V120 fibronectin isoforms in proliferative immune complex nephritis.
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Alonso J, Gómez-Chiarri M, Ortíz A, Serón D, Condom E, López-Armada MJ, Largo R, Barat A, and Egido J
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- Alternative Splicing physiology, Animals, Blotting, Northern, Disease Progression, Female, Fibronectins analysis, Gene Expression physiology, Glomerulonephritis immunology, Immunohistochemistry, Isomerism, Kidney Glomerulus chemistry, Kidney Glomerulus physiopathology, Leukocytes, Mononuclear immunology, RNA Precursors metabolism, RNA Probes, Rats, Rats, Wistar, Ribonucleases, Up-Regulation physiology, Fibronectins chemistry, Fibronectins genetics, Glomerulonephritis metabolism, Kidney Glomerulus metabolism
- Abstract
Fibronectin: (FNs) comprise a family of adhesive glycoproteins that are prominent components of mesangial extracellular matrix and accumulate during glomerular injury. By alternative splicing of an unique mRNA precursor, various FN isoforms can be originated. In rat, three regions of the molecule are involved: EIIIA, EIIIB and V. Because specific FN isoforms are expressed in embryogenesis and wound healing, conditions characterized by cell migration and adhesion, we examined the pattern of FN isoforms in the mild and severe phases of a progressive immune complex proliferative nephritis in rats. We constructed specific probes to analyze the splicing pattern of FN pre-mRNAs by ribonuclease protection assays. FN mRNAs containing EIIIA, EIIIB and V regions increased along, the progression of nephritis, though the increment of EIIIB-FN mRNA was modest. However, different regulation of all these isoforms was observed. The percentage of FN mRNA containing the EIIIA exon versus total FN increased with the severity of the disease, while the percentage of FN mRNA containing the EIIIB exon decreased. Relative V-FN mRNA expression versus total FN mRNA increased only in the severe phase. By means of specific antibodies we also studied the presence of EIIIA, EIIIB and V-FN proteins in the kidney. In the normal glomerutus, EIIIA-FN protein was barely detectable in the mesangium, increasing in the mild phase of nephritis. In the severe phase of nephritis, increased EIIIA-FN was localized in the mesangium, in Bowman's capsule and in crescents. By contrast, EIIIB-FN protein in the glomerulus was absent even in the severe phase. V120-FN protein, an isoform that mediates the attachment of leukocytes through the VLA-4 integrin, was present in the mesangium and glomerular capillary loops in control animals, and increased in the severe phase of nephritis, coinciding with a strong leukocyte infiltration. In conclusion, our results show that during immune glomerular injury there were marked changes in the pattern of FN isoforms expression. Since those isoforms, particularly V120 isoform, are important in cell adhesion and migration, their up-regulation may facilitate the recruitment of cells into the injured glomeruli. The blockade of the interaction between V120-FN and infiltrating leukocytes may represent a new approach to the treatment of nephritis.
- Published
- 1996
- Full Text
- View/download PDF
22. Interferon-inducible protein-10 is highly expressed in rats with experimental nephrosis.
- Author
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Gómez-Chiarri M, Ortiz A, González-Cuadrado S, Serón D, Emancipator SN, Hamilton TA, Barat A, Plaza JJ, González E, and Egido J
- Subjects
- Animals, Base Sequence, Cells, Cultured, Chemokine CXCL10, Doxorubicin, Female, Immunophenotyping, Lymphocyte Activation, Mice, Molecular Sequence Data, Nephrosis chemically induced, RNA, Messenger metabolism, Rats, Rats, Wistar, Time Factors, Chemokines, CXC, Cytokines metabolism, Kidney Glomerulus metabolism, Kidney Tubules metabolism, Nephrosis metabolism
- Abstract
Interferon-inducible protein (IP)-10 is a small glycoprotein member of a family of chemotactic cytokines structurally related to interleukin-8. We have recently described the induction of IP-10 mRNA in mouse mesangial cells stimulated with lipopolysacharide, interferon-gamma, and tumor necrosis factor-alpha. To further evaluate a possible role for this chemokine in renal injury, we have studied IP-10 in an experimental model of nephrosis induced in rats by adriamycin. High levels of glomerular IP-10 mRNA expression and glomerular and tubulointerstitial IP-10 protein were seen on day 21, coinciding with maximal proteinuria, glomerular tumor necrosis factor mRNA expression, and interstitial cellular infiltrates. Maintenance on a low protein diet not only delayed the appearance of proteinuria and interstitial cellular infiltrate but also decreased glomerular IP-10 mRNA expression. Isolated normal glomeruli and cultured glomerular epithelial and mesangial cells from normal rats expressed IP-10 mRNA upon stimulation with 100 U/ml interferon or 1 microgram/ml lipopolysaccharide for 3 hours. IP-10 mRNA expression was also inducible by lipopolysaccharide and cytokines in NRK 49F renal interstitial fibroblasts and, to a lesser extent, in NRK 52E tubular epithelial cells. Furthermore, IP-10 protein was inducible in murine mesangial cells. We conclude that IP-10 is highly inducible in vitro and in vivo in resident glomerular and tubulointerstitial cells. IP-10 may participate in the modulation of renal damage in experimental nephrosis.
- Published
- 1996
23. Fibronectin (FN) decreases glomerular lesions and synthesis of tumour necrosis factor-alpha (TNF-alpha), platelet-activating factor (PAF) and FN in proliferative glomerulonephritis.
- Author
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Ortíz A, Alonso J, Gómez-Chiarri M, Lerma JL, Seron D, Condom E, González E, and Egido J
- Subjects
- Animals, Extracellular Matrix drug effects, Extracellular Matrix metabolism, Glomerular Mesangium drug effects, Glomerular Mesangium metabolism, Kidney cytology, Kidney metabolism, Leukocytes, Mononuclear metabolism, Male, Neutrophils metabolism, Rats, Rats, Wistar, Fibronectins biosynthesis, Fibronectins pharmacology, Glomerulonephritis, Membranoproliferative drug therapy, Glomerulonephritis, Membranoproliferative metabolism, Platelet Activating Factor biosynthesis, Tumor Necrosis Factor-alpha biosynthesis
- Abstract
We have studied the effect of therapy with plasma FN on glomerular synthesis of PAF, TNF-alpha and FN, in experimental proliferative glomerulonephritis. Glomerular PAF, TNF-alpha and FN production were increased in rats with nephritis. Peak glomerular PAF production preceded, while peak glomerular TNF-alpha bioactivity coincided with maximal proteinuria. Rats treated with FN (5 mg/kg per 48 h) for 15 days had less proteinuria, glomerular and interstitial cell infiltration and glomerular PAF, TNF-alpha and FN synthesis than non-treated rats. In order to characterize further the mechanisms of action of FN, healthy rats were injected with either FN or saline. Peripheral blood mononuclear cells and neutrophils from healthy rats injected with FN secreted less TNF-alpha and PAF, respectively, than those obtained from saline-treated rats. Our data suggest that the beneficial effect of FN may be related to decreased number of glomerular leucocytes and decreased synthesis of inflammatory mediators and extracellular matrix.
- Published
- 1995
- Full Text
- View/download PDF
24. Involvement of tumor necrosis factor and platelet-activating factor in the pathogenesis of experimental nephrosis in rats.
- Author
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Gómez-Chiarri M, Ortíz A, Lerma JL, López-Armada MJ, Mampaso F, González E, and Egido J
- Subjects
- Animals, Cell Death, Cells, Cultured, Doxorubicin, Female, Ginkgolides, Kidney Glomerulus cytology, Kidney Glomerulus metabolism, Nephrosis pathology, Nephrosis physiopathology, Proteinuria pathology, Proteinuria physiopathology, Puromycin Aminonucleoside, Rats, Rats, Wistar, Diterpenes, Lactones pharmacology, Nephrosis chemically induced, Platelet Activating Factor physiology, Platelet Membrane Glycoproteins drug effects, Proteinuria chemically induced, Receptors, Cell Surface, Receptors, G-Protein-Coupled, Tumor Necrosis Factor-alpha physiology
- Abstract
Background: The experimental nephrosis induced in rats by adriamycin (ADR) or puromycin aminonucleoside (PA) provide a useful model to study the participation of inflammatory mediators in the pathogenesis of proteinuria., Experimental Design: We have measured tumor necrosis factor (TNF) and platelet-activating factor (PAF) production by glomeruli of rats with nephrosis, as well as the effect of treatment with the PAF antagonist, BN52021. We have also evaluated the in vitro effects of ADR, PA, and PAF on TNF and PAF production, cell viability, and protein synthesis in glomerular mesangial cells and glomerular epithelial cells (GEC) in culture., Results: In ADR nephrosis, the greatest production of PAF was on day 14, preceding maximal proteinuria, whereas the highest levels of TNF where observed on day 21 after ADR injection, the moment at which proteinuria reached maximal levels. In PA nephrosis, glomerular PAF production peaked twice (days 1 and 15), before and after maximal proteinuria (day 11), whereas TNF production peaked from days 2 to 11, and slowly declined until day 21. In both models, treatment with BN52021 induced a striking decrease in proteinuria, as well as a diminution in glomerular TNF and PAF production. Both ADR and PA induced TNF and PAF production in whole glomeruli, glomerular mesangial cells, and GEC in culture. As shown by a 51Cr release assay, ADR and PA were toxic to GEC. This effect was inhibited by PAF antagonists and by anti-TNF antibodies. Whereas TNF was moderately toxic to GEC, PAF had no effect on 51Cr release. TNF toxicity was abolished by anti-TNF antibodies and largely diminished by PAF antagonists., Conclusions: TNF and PAF may participate in the induction of GEC damage and the development of proteinuria in two experimental models of nephrosis in rats.
- Published
- 1994
25. The potential role of inflammatory and fibrogenic cytokines in the glomerular diseases.
- Author
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Ortiz A, Gómez-Chiarri M, Alonso J, Bustos C, Gómez-Guerrero C, López-Armada MJ, Gómez-Garre D, Palacios I, Ruíz-Ortega M, and Gutierrez S
- Subjects
- Animals, Cytokines biosynthesis, Glomerular Mesangium immunology, Glomerular Mesangium metabolism, Glomerulonephritis immunology, Glomerulonephritis therapy, Humans, Inflammation, Interleukin-1 pharmacology, Interleukin-1 physiology, Interleukin-6 pharmacology, Interleukin-6 physiology, Kidney Glomerulus drug effects, Kidney Glomerulus physiopathology, Platelet-Derived Growth Factor pharmacology, Platelet-Derived Growth Factor physiology, Transforming Growth Factor beta pharmacology, Transforming Growth Factor beta physiology, Tumor Necrosis Factor-alpha biosynthesis, Tumor Necrosis Factor-alpha pharmacology, Tumor Necrosis Factor-alpha physiology, Cytokines physiology, Glomerulonephritis physiopathology, Kidney Glomerulus physiology
- Abstract
In recent years increasing evidence has been accumulated on the role of cytokines in mediating glomerular and renal damage. Many such cytokines are released in the inflamed glomeruli by leukocytes and intrinsic glomerular cells. Cytokines not only recruit inflammatory cells into the injured glomeruli, but also induce a variety of responses on glomerular cells that range from a direct toxic effect to shape changes, proliferation, and induction of the release of inflammatory mediators and extracellular matrix, and could promote further glomerular damage. Moreover, exogenous administration of cytokines has induced glomerular injury in healthy animals and has enhanced renal damage in animals with glomerulonephritis. Anti-cytokine strategies have proved to be effective therapeutical alternatives in experimental models of glomerular diseases and may provide a more specific approach to the management of human glomerulonephritis.
- Published
- 1994
26. Expression of IP-10, a lipopolysaccharide- and interferon-gamma-inducible protein, in murine mesangial cells in culture.
- Author
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Gómez-Chiarri M, Hamilton TA, Egido J, and Emancipator SN
- Subjects
- Animals, Cells, Cultured, Chemokine CXCL10, Cycloheximide pharmacology, Cytokines genetics, Dose-Response Relationship, Drug, Glomerular Mesangium cytology, Mice, RNA, Messenger metabolism, Time Factors, Chemokines, CXC, Cytokines metabolism, Glomerular Mesangium metabolism, Interferon-gamma pharmacology, Lipopolysaccharides pharmacology
- Abstract
IP-10 is an early gene induced in multiple cell types by a variety of proinflammatory agents, notably interferons (IFNs) and lipopolysaccharide (LPS). To determine whether this protein might play a role in amplifying immune-mediated glomerular injury, we cultured mouse mesangial cells with several stimuli for various times. Increasing amounts of IFN-gamma (to 100 units/ml) elicited increasing levels of IP-10 messenger RNA (mRNA), sustained to 24 hours, but had no effect on tumor necrosis factor-alpha (TNF-alpha) mRNA. LPS induced transient IP-10 mRNA expression that peaked at 8 hours; TNF-alpha mRNA was also increased. TNF-alpha at doses up to 10 ng/ml and soluble immune complexes up to 150 micrograms/ml antibody evoked 3- to 5-fold increases in IP-10 mRNA expression, much less than the 30- to 70-fold increases seen with IFN-gamma and LPS. We conclude that IFN-gamma, LPS, and other agonists can amplify glomerular immune injury, perhaps via elevated expression of IP-10.
- Published
- 1993
27. Role of tumor necrosis factor-alpha in the pathogenesis of glomerular diseases.
- Author
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Egido J, Gómez-Chiarri M, Ortíz A, Bustos C, Alonso J, Gómez-Guerrero C, Gómez-Garre D, López-Armada MJ, Plaza J, and Gonzalez E
- Subjects
- Animals, Fibrosis, Glomerulonephritis etiology, Glomerulonephritis, Membranoproliferative etiology, Humans, Inflammation etiology, Kidney Diseases pathology, Kidney Glomerulus pathology, Kidney Glomerulus physiopathology, Receptors, Cell Surface physiology, Receptors, Tumor Necrosis Factor, Kidney Diseases etiology, Tumor Necrosis Factor-alpha physiology
- Published
- 1993
28. The intercrine superfamily and renal disease.
- Author
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Gómez-Chiarri M, Ortíz A, Serón D, Gonzalez E, and Egido J
- Subjects
- Animals, Chemokine CXCL10, Cytokines genetics, Humans, Kidney physiopathology, Kidney Diseases pathology, Kidney Glomerulus injuries, RNA, Messenger genetics, Chemokines, CXC, Cytokines physiology, Kidney Diseases etiology
- Published
- 1993
29. [The participation of platelet-activating factor and cytokines in the pathogenesis of glomerular damage].
- Author
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Egido J, Gómez-Chiarri M, Lerma JL, González E, Maestre C, Ortiz A, and Hernando L
- Subjects
- Animals, Glomerulonephritis physiopathology, Glomerulonephritis, Membranoproliferative etiology, Glomerulonephritis, Membranoproliferative physiopathology, Humans, Nephrotic Syndrome etiology, Nephrotic Syndrome physiopathology, Tumor Necrosis Factor-alpha physiology, Cytokines physiology, Glomerulonephritis etiology, Kidney Glomerulus physiopathology, Platelet Activating Factor physiology
- Published
- 1990
30. Evidence suggesting a role for platelet-activating factor (PAF) in experimental nephrotic syndrome.
- Author
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Egido J, Mampaso F, Gómez-Chiarri M, González E, Ortíz A, Lerma JL, Robles A, Braquet P, and Hernando L
- Subjects
- Acetates metabolism, Animals, Doxorubicin, Kidney pathology, Kidney ultrastructure, Kidney Glomerulus metabolism, Male, Platelet Activating Factor antagonists & inhibitors, Proteinuria chemically induced, Proteinuria metabolism, Proteinuria pathology, Rats, Rats, Inbred Strains, Receptors, Cell Surface antagonists & inhibitors, Time Factors, Nephrotic Syndrome physiopathology, Platelet Activating Factor physiology, Platelet Membrane Glycoproteins, Receptors, G-Protein-Coupled
- Abstract
Sprague-Dawley rats injected with a single dose of adriamycin at 7.5 mg/kg/day developed an important and persistent proteinuria from day 14. Animals treated from day 0 to 3 weeks with PAF-receptor antagonists (BN 52021 or alprazolam) did not present (p less than 0.0005) the adriamycin-induced proteinuria or only to a very low extent. Furthermore, epithelial glomerular cells presented in these animals a normal aspect, while in rats injected with adriamycin, but not treated, the epithelial cells showed effacement of foot processes and intensive degenerative changes. By contrast, rats treated with steroids or cyclosporin did not present a significant reduction in proteinuria or improvements in epithelial cell lesions. Rats injected with adriamycin also presented an increase in the number of inflammatory infiltrating cells, chiefly la(+)-reactive cells (OX6+ cells), macrophages (ED1+ cells) and T-cytotoxic/suppressor cells (OX8+ cells). Concomitant administration of PAF-receptor antagonists induced a significant reduction in the number of these cells. Glomerular cells from normal control rats incubated with adriamycin incorporated 3H-acetate into a polar lipid with biological and migratory characteristics on thin-layer chromatography similar to synthetic PAF. On the whole, our data suggest a role for PAF in the pathogenesis of experimental nephrotic syndrome induced by adriamycin.
- Published
- 1990
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