50 results on '"Falconet, Denis"'
Search Results
2. Cytoklepty in the plankton: A host strategy to optimize the bioenergetic machinery of endosymbiotic algae
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Uwizeye, Clarisse, Brisbin, Margaret Mars, Gallet, Benoit, Chevalier, Fabien, LeKieffre, Charlotte, Schieber, Nicole L, Falconet, Denis, Wangpraseurt, Daniel, Schertel, Lukas, Stryhanyuk, Hryhoriy, Musat, Niculina, Mitarai, Satoshi, Schwab, Yannick, Finazzi, Giovanni, and Decelle, Johan
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Plant Biology ,Biological Sciences ,Ecology ,Carbon Cycle ,Cell Division ,Cell Nucleus ,Energy Metabolism ,Haptophyta ,Microalgae ,Mitochondria ,Photosynthesis ,Plankton ,Plastids ,Symbiosis ,symbiosis ,oceanic plankton ,photosynthesis  ,3D electron microscopy ,single-cell transcriptomics ,photosynthesis - Abstract
Endosymbioses have shaped the evolutionary trajectory of life and remain ecologically important. Investigating oceanic photosymbioses can illuminate how algal endosymbionts are energetically exploited by their heterotrophic hosts and inform on putative initial steps of plastid acquisition in eukaryotes. By combining three-dimensional subcellular imaging with photophysiology, carbon flux imaging, and transcriptomics, we show that cell division of endosymbionts (Phaeocystis) is blocked within hosts (Acantharia) and that their cellular architecture and bioenergetic machinery are radically altered. Transcriptional evidence indicates that a nutrient-independent mechanism prevents symbiont cell division and decouples nuclear and plastid division. As endosymbiont plastids proliferate, the volume of the photosynthetic machinery volume increases 100-fold in correlation with the expansion of a reticular mitochondrial network in close proximity to plastids. Photosynthetic efficiency tends to increase with cell size, and photon propagation modeling indicates that the networked mitochondrial architecture enhances light capture. This is accompanied by 150-fold higher carbon uptake and up-regulation of genes involved in photosynthesis and carbon fixation, which, in conjunction with a ca.15-fold size increase of pyrenoids demonstrates enhanced primary production in symbiosis. Mass spectrometry imaging revealed major carbon allocation to plastids and transfer to the host cell. As in most photosymbioses, microalgae are contained within a host phagosome (symbiosome), but here, the phagosome invaginates into enlarged microalgal cells, perhaps to optimize metabolic exchange. This observation adds evidence that the algal metamorphosis is irreversible. Hosts, therefore, trigger and benefit from major bioenergetic remodeling of symbiotic microalgae with potential consequences for the oceanic carbon cycle. Unlike other photosymbioses, this interaction represents a so-called cytoklepty, which is a putative initial step toward plastid acquisition.
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- 2021
3. Morphological bases of phytoplankton energy management and physiological responses unveiled by 3D subcellular imaging
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Uwizeye, Clarisse, Decelle, Johan, Jouneau, Pierre-Henri, Flori, Serena, Gallet, Benoit, Keck, Jean-Baptiste, Bo, Davide Dal, Moriscot, Christine, Seydoux, Claire, Chevalier, Fabien, Schieber, Nicole L., Templin, Rachel, Allorent, Guillaume, Courtois, Florence, Curien, Gilles, Schwab, Yannick, Schoehn, Guy, Zeeman, Samuel C., Falconet, Denis, and Finazzi, Giovanni
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- 2021
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4. A Palmitic Acid Elongase Affects Eicosapentaenoic Acid and Plastidial Monogalactosyldiacylglycerol Levels in Nannochloropsis
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Dolch, Lina-Juana, Rak, Camille, Perin, Giorgio, Tourcier, Guillaume, Broughton, Richard, Leterrier, Marina, Morosinotto, Tomas, Tellier, Frédérique, Faure, Jean-Denis, Falconet, Denis, Jouhet, Juliette, Sayanova, Olga, Beaudoin, Frédéric, and Maréchal, Eric
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- 2017
5. Turnover rates in microorganisms by laser ablation electrospray ionization mass spectrometry and pulse-chase analysis
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Stopka, Sylwia A., Mansour, Tarek R., Shrestha, Bindesh, Maréchal, Éric, Falconet, Denis, and Vertes, Akos
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- 2016
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6. A chemical screen identifies two novel small compounds that alter Arabidopsis thaliana pollen tube growth
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Laggoun, Ferdousse, Dardelle, Flavien, Dehors, Jérémy, Falconet, Denis, Driouich, Azeddine, Rochais, Christophe, Dallemagne, Patrick, Lehner, Arnaud, and Mollet, Jean-Claude
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- 2019
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7. Deciphering silver nanoparticle fate in liver up to biliary excretion using HepG2/C3A spheroids in scenarios mimicking different exposure pathways.
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Rekik, Yousr, Tardillo Suárez, Vanessa, Sharma, Vikas Raj, Chevallet, Mireille, Gallet, Benoit, Falconet, Denis, Charbonnier, Peggy, Kieffer, Isabelle, Tucoulou, Rémi, Jouneau, Pierre-Henri, Veronesi, Giulia, and Deniaud, Aurélien
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- 2023
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8. 3D‐reconstructions of zygospores in Zygnema vaginatum (Charophyta) reveal details of cell wall formation, suggesting adaptations to extreme habitats.
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Permann, Charlotte, Pichrtová, Martina, Šoljaková, Tereza, Herburger, Klaus, Jouneau, Pierre‐Henri, Uwizeye, Clarisse, Falconet, Denis, Marechal, Eric, and Holzinger, Andreas
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ZYGOTES ,FOCUSED ion beams ,CHAROPHYTA ,TRANSMISSION electron microscopy ,SCANNING electron microscopy - Abstract
The streptophyte green algal class Zygnematophyceae is the immediate sister lineage to land plants. Their special form of sexual reproduction via conjugation might have played a key role during terrestrialization. Thus, studying Zygnematophyceae and conjugation is crucial for understanding the conquest of land. Moreover, sexual reproduction features are important for species determination. We present a phylogenetic analysis of a field‐sampled Zygnema strain and analyze its conjugation process and zygospore morphology, both at the micro‐ and nanoscale, including 3D‐reconstructions of the zygospore architecture. Vegetative filament size (26.18 ± 1.07 μm) and reproductive features allowed morphological determination of Zygnema vaginatum, which was combined with molecular analyses based on rbcL sequencing. Transmission electron microscopy (TEM) depicted a thin cell wall in young zygospores, while mature cells exhibited a tripartite wall, including a massive and sculptured mesospore. During development, cytological reorganizations were visualized by focused ion beam scanning electron microscopy (FIB‐SEM). Pyrenoids were reorganized, and the gyroid cubic central thylakoid membranes, as well as the surrounding starch granules, degraded (starch granule volume: 3.58 ± 2.35 μm3 in young cells; 0.68 ± 0.74 μm3 at an intermediate stage of zygospore maturation). Additionally, lipid droplets (LDs) changed drastically in shape and abundance during zygospore maturation (LD/cell volume: 11.77% in young cells; 8.79% in intermediate cells, 19.45% in old cells). In summary, we provide the first TEM images and 3D‐reconstructions of Zygnema zygospores, giving insights into the physiological processes involved in their maturation. These observations help to understand mechanisms that facilitated the transition from water to land in Zygnematophyceae. [ABSTRACT FROM AUTHOR]
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- 2023
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9. Energetic coupling between plastids and mitochondria drives C[O.sub.2] assimilation in diatoms
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Bailleul, Benjamin, Berne, Nicolas, Murik, Omer, Petroutsos, Dimitris, Prihoda, Judit, Tanaka, Atsuko, Villanova, Valeria, Bligny, Richard, Flori, Serena, Falconet, Denis, Krieger-Liszkay, Anja, Santabarbara, Stefano, Rappaport, Fabrice, Joliot, Pierre, Tirichine, Leila, Falkowski, Paul G., Cardol, Pierre, Bowler, Chris, and Finazzi, Giovanni
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Diatoms -- Research ,Mitochondria -- Physiological aspects ,Photosynthesis -- Research ,Phytochemistry -- Research ,Botanical research ,Plastids -- Physiological aspects ,Environmental issues ,Science and technology ,Zoology and wildlife conservation - Abstract
Diatoms are one of the most ecologically successful classes of photosynthetic marine eukaryotes in the contemporary oceans. Over the past 30 million years, they have helped to moderate Earth's climate [...]
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- 2015
10. Mitochondrial activity and biogenesis during resurrection of Haberlea rhodopensis.
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Ivanova, Aneta, O′Leary, Brendan, Signorelli, Santiago, Falconet, Denis, Moyankova, Daniela, Whelan, James, Djilianov, Dimitar, and Murcha, Monika W.
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MITOCHONDRIA ,RESPIRATORY measurements ,RESURRECTION ,MESSENGER RNA ,PLANT mitochondria ,MITOCHONDRIAL proteins - Abstract
Summary: Haberlea rhodopensis is a resurrection plant that can tolerate extreme and prolonged periods of desiccation with a rapid restoration of physiological function upon rehydration. Specialized mechanisms are required to minimize cellular damage during desiccation and to maintain integrity for rapid recovery following rehydration.In this study we used respiratory activity measurements, electron microscopy, transcript, protein and blue native‐PAGE analysis to investigate mitochondrial activity and biogenesis in fresh, desiccated and rehydrated detached H. rhodopensis leaves.We demonstrate that unlike photosynthesis, mitochondrial respiration was almost immediately activated to levels of fresh tissue upon rehydration. The abundance of transcripts and proteins involved in mitochondrial respiration and biogenesis were at comparable levels in fresh, desiccated and rehydrated tissues. Blue native‐PAGE analysis revealed fully assembled and equally abundant OXPHOS complexes in mitochondria isolated from fresh, desiccated and rehydrated detached leaves. We observed a high abundance of alternative respiratory components which correlates with the observed high uncoupled respiration capacity in desiccated tissue.Our study reveals that during desiccation of vascular H. rhodopensis tissue, mitochondrial composition is conserved and maintained at a functional state allowing for an almost immediate activation to full capacity upon rehydration. Mitochondria‐specific mechanisms were activated during desiccation which probably play a role in maintaining tolerance. [ABSTRACT FROM AUTHOR]
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- 2022
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11. Proteomics Evidence of a Systemic Response to Desiccation in the Resurrection Plant Haberlea rhodopensis.
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Mladenov, Petko, Zasheva, Diana, Planchon, Sébastien, Leclercq, Céline C., Falconet, Denis, Moyet, Lucas, Brugière, Sabine, Moyankova, Daniela, Tchorbadjieva, Magdalena, Ferro, Myriam, Rolland, Norbert, Renaut, Jenny, Djilianov, Dimitar, and Deng, Xin
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DROUGHT tolerance ,PROTEOMICS ,HEAT shock proteins ,CELL preservation ,METABOLISM - Abstract
Global warming and drought stress are expected to have a negative impact on agricultural productivity. Desiccation-tolerant species, which are able to tolerate the almost complete desiccation of their vegetative tissues, are appropriate models to study extreme drought tolerance and identify novel approaches to improve the resistance of crops to drought stress. In the present study, to better understand what makes resurrection plants extremely tolerant to drought, we performed transmission electron microscopy and integrative large-scale proteomics, including organellar and phosphorylation proteomics, and combined these investigations with previously published transcriptomic and metabolomics data from the resurrection plant Haberlea rhodopensis. The results revealed new evidence about organelle and cell preservation, posttranscriptional and posttranslational regulation, photosynthesis, primary metabolism, autophagy, and cell death in response to desiccation in H. rhodopensis. Different protective intrinsically disordered proteins, such as late embryogenesis abundant (LEA) proteins, thaumatin-like proteins (TLPs), and heat shock proteins (HSPs), were detected. We also found a constitutively abundant dehydrin in H. rhodopensis whose phosphorylation levels increased under stress in the chloroplast fraction. This integrative multi-omics analysis revealed a systemic response to desiccation in H. rhodopensis and certain targets for further genomic and evolutionary studies on DT mechanisms and genetic engineering towards the improvement of drought tolerance in crops. [ABSTRACT FROM AUTHOR]
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- 2022
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12. GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts
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Aubourg, Sébastien, Brunaud, Véronique, Bruyère, Clémence, Cock, Mark, Cooke, Richard, Cottet, Annick, Couloux, Arnaud, Déhais, Patrice, Deléage, Gilbert, Duclert, Aymeric, Echeverria, Manuel, Eschbach, Aimée, Falconet, Denis, Filippi, Ghislain, Gaspin, Christine, Geourjon, Christophe, Grienenberger, Jean-Michel, Houlné, Guy, Jamet, Elisabeth, Lechauve, Frédéric, Leleu, Olivier, Leroy, Philippe, Mache, Régis, Meyer, Christian, Nedjari, Hafed, Negrutiu, Ioan, Orsini, Valérie, Peyretaillade, Eric, Pommier, Cyril, Raes, Jeroen, Risler, Jean-Loup, Rivière, Stéphane, Rombauts, Stéphane, Rouzé, Pierre, Schneider, Michel, Schwob, Philippe, Small, Ian, Soumayet-Kampetenga, Ghislain, Stankovski, Darko, Toffano, Claire, Tognolli, Michael, Caboche, Michel, and Lecharny, Alain
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- 2005
13. Expression of the chlorophyll-a/b-protein multigene family in pea (Pisum sativum L.): Evidence for distinct developmental responses
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White, Michael J., Fristensky, Brian W., Falconet, Denis, Childs, Lisa C., Watson, John C., Alexander, Laura, Roe, Bruce A., and Thompson, William F.
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- 1992
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14. Nucleotide sequence ofCab-8, a new type I gene encoding a chlorophylla/b-binding protein of LHC II inPisum
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Alexander, Laura, Falconet, Denis, Fristensky, Brian W., White, Michael J., Watson, John C., Roe, Bruce A., and Thompson, William F.
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- 1991
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15. Nucleotide sequence ofCab-215, a Type II gene encoding a photosystem II chlorophylla/b-binding protein inPisum
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Falconet, Denis, White, Michael J., Fristensky, Brian W., Dobres, Michael S., and Thompson, William F.
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- 1991
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16. Mixotrophic growth of the extremophile Galdieria sulphuraria reveals the flexibility of its carbon assimilation metabolism.
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Curien, Gilles, Lyska, Dagmar, Guglielmino, Erika, Westhoff, Phillip, Janetzko, Janina, Tardif, Marianne, Hallopeau, Clément, Brugière, Sabine, Dal Bo, Davide, Decelle, Johan, Gallet, Benoit, Falconet, Denis, Carone, Michele, Remacle, Claire, Ferro, Myriam, Weber, Andreas P.M., and Finazzi, Giovanni
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CARBON metabolism ,BIOLOGICAL fitness ,HOT springs ,RESPIRATION ,BIOMASS production ,EXTREME environments ,HETEROTROPHIC respiration ,RESPIRATION in plants - Abstract
Summary: Galdieriasulphuraria is a cosmopolitan microalga found in volcanic hot springs and calderas. It grows at low pH in photoautotrophic (use of light as a source of energy) or heterotrophic (respiration as a source of energy) conditions, using an unusually broad range of organic carbon sources. Previous data suggested that G. sulphuraria cannot grow mixotrophically (simultaneously exploiting light and organic carbon as energy sources), its photosynthetic machinery being repressed by organic carbon.Here, we show that G. sulphuraria SAG21.92 thrives in photoautotrophy, heterotrophy and mixotrophy. By comparing growth, biomass production, photosynthetic and respiratory performances in these three trophic modes, we show that addition of organic carbon to cultures (mixotrophy) relieves inorganic carbon limitation of photosynthesis thanks to increased CO2 supply through respiration. This synergistic effect is lost when inorganic carbon limitation is artificially overcome by saturating photosynthesis with added external CO2.Proteomic and metabolic profiling corroborates this conclusion suggesting that mixotrophy is an opportunistic mechanism to increase intracellular CO2 concentration under physiological conditions, boosting photosynthesis by enhancing the carboxylation activity of Ribulose‐1,5‐bisphosphate carboxylase‐oxygenase (Rubisco) and decreasing photorespiration.We discuss possible implications of these findings for the ecological success of Galdieria in extreme environments and for biotechnological applications. [ABSTRACT FROM AUTHOR]
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- 2021
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17. Consequences of Mixotrophy on Cell Energetic Metabolism in Microchloropsis gaditana Revealed by Genetic Engineering and Metabolic Approaches.
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Bo, Davide Dal, Magneschi, Leonardo, Bedhomme, Mariette, Billey, Elodie, Deragon, Etienne, Storti, Mattia, Menneteau, Mathilde, Richard, Christelle, Rak, Camille, Lapeyre, Morgane, Lembrouk, Mehdi, Conte, Melissa, Gros, Valérie, Tourcier, Guillaume, Giustini, Cécile, Falconet, Denis, Curien, Gilles, Allorent, Guillaume, Petroutsos, Dimitris, and Laeuffer, Frédéric
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CELL metabolism ,GENETIC engineering ,ENERGY management ,ORGANIC compounds ,FATTY acids ,LYSOGENY ,ALGAL growth - Abstract
Algae belonging to the Microchloropsis genus are promising organisms for biotech purposes, being able to accumulate large amounts of lipid reserves. These organisms adapt to different trophic conditions, thriving in strict photoautotrophic conditions, as well as in the concomitant presence of light plus reduced external carbon as energy sources (mixotrophy). In this work, we investigated the mixotrophic responses of Microchloropsis gaditana (formerly Nannochloropsis gaditana). Using the Biolog growth test, in which cells are loaded into multiwell plates coated with different organic compounds, we could not find a suitable substrate for Microchloropsis mixotrophy. By contrast, addition of the Lysogeny broth (LB) to the inorganic growth medium had a benefit on growth, enhancing respiratory activity at the expense of photosynthetic performances. To further dissect the role of respiration in Microchloropsis mixotrophy, we focused on the mitochondrial alternative oxidase (AOX), a protein involved in energy management in other algae prospering in mixotrophy. Knocking-out the AOX1 gene by transcription activator-like effector nuclease (TALE-N) led to the loss of capacity to implement growth upon addition of LB supporting the hypothesis that the effect of this medium was related to a provision of reduced carbon. We conclude that mixotrophic growth in Microchloropsis is dominated by respiratory rather than by photosynthetic energetic metabolism and discuss the possible reasons for this behavior in relationship with fatty acid breakdown via β-oxidation in this oleaginous alga. [ABSTRACT FROM AUTHOR]
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- 2021
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18. A multifaceted analysis reveals two distinct phases of chloroplast biogenesis during de-etiolation in Arabidopsis.
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Pipitone, Rosa, Eicke, Simona, Pfister, Barbara, Glauser, Gaetan, Falconet, Denis, Uwizeye, Clarisse, Pralon, Thibaut, Zeeman, Samuel C., Kessler, Felix, and Demarsy, Emilie
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- 2021
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19. RGD-dependent growth of maize calluses and immunodetection of an integrin-like protein
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Labouré, Anne-Marie, Faik, Ahmed, Mandaron, Paul, and Falconet, Denis
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- 1999
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20. Extensive mitochondrial DNA variation in somatic tissue cultures initiated from wheat immature embryos
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Rode, André, Hartmann, Caroline, Falconet, Denis, Lejeune, Bernard, Quétier, Françis, Benslimane, Abdelali, Henry, Yves, and de Buyser, Jacques
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- 1987
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21. Nucleotide sequence and determination of the extremities of the 26S ribosomal RNA gene in wheat mitochondria: evidence for sequence rearrangements in the ribosomal genes of higher plants
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Falconet, Denis, Sevignac, Mireille, and Quétier, Francis
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- 1988
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22. Wheat mitochondrial 26S ribosomal RNA gene has no intron and is present in multiple copies arising by recombination
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Falconet, Denis, Delorme, Sylvie, Lejeune, Bernard, Sévignac, Mireille, Delcher, Evelyne, Bazetoux, Suzette, and Quétier, Francis
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- 1985
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23. Multiple FtsZ2 isoforms involved in chloroplast division and biogenesis are developmentally associated with thylakoid membranes in Arabidopsis
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Karamoko, Mohamed, El-Kafafi, El-Sayed, Mandaron, Paul, Lerbs-Mache, Silva, and Falconet, Denis
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- 2011
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24. Coccomyxa actinabiotis sp. nov. (Trebouxiophyceae, Chlorophyta), a new green microalga living in the spent fuel cooling pool of a nuclear reactor.
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Rivasseau, Corinne, Farhi, Emmanuel, Compagnon, Estelle, Gouvion Saint Cyr, Diane, Lis, Robert, Falconet, Denis, Kuntz, Marcel, Atteia, Ariane, Couté, Alain, and Müller, K.
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GREEN algae ,PLANT ecology ,IONIZING radiation ,GENOMES ,PHYLOGENY ,ALGAE - Abstract
Life can thrive in extreme environments where inhospitable conditions prevail. Organisms which resist, for example, acidity, pressure, low or high temperature, have been found in harsh environments. Most of them are bacteria and archaea. The bacterium Deinococcus radiodurans is considered to be a champion among all living organisms, surviving extreme ionizing radiation levels. We have discovered a new extremophile eukaryotic organism that possesses a resistance to ionizing radiations similar to that of D. radiodurans. This microorganism, an autotrophic freshwater green microalga, lives in a peculiar environment, namely the cooling pool of a nuclear reactor containing spent nuclear fuels, where it is continuously submitted to nutritive, metallic, and radiative stress. We investigated its morphology and its ultrastructure by light, fluorescence and electron microscopy as well as its biochemical properties. Its resistance to UV and gamma radiation was assessed. When submitted to different dose rates of the order of some tens of mGy · h
−1 to several thousands of Gy · h−1 , the microalga revealed to be able to survive intense gamma-rays irradiation, up to 2,000 times the dose lethal to human. The nuclear genome region spanning the genes for small subunit ribosomal RNA-Internal Transcribed Spacer ( ITS) 1-5.8S rRNA- ITS2-28S rRNA (beginning) was sequenced (4,065 bp). The phylogenetic position of the microalga was inferred from the 18S rRNA gene. All the revealed characteristics make the alga a new species of the genus Coccomyxa in the class Trebouxiophyceae, which we name Coccomyxa actinabiotis sp. nov. [ABSTRACT FROM AUTHOR]- Published
- 2016
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25. Ultrastructure of the Periplastidial Compartment of the Diatom Phaeodactylum tricornutum.
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Flori, Serena, Jouneau, Pierre-Henri, Finazzi, Giovanni, Maréchal, Eric, and Falconet, Denis
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PHAEODACTYLUM tricornutum ,DIATOMS ,ULTRASTRUCTURE (Biology) ,RED algae ,SYMBIOSIS ,PLASTIDS ,ENDOPLASMIC reticulum - Abstract
Diatoms contain a secondary plastid that derives from a red algal symbiont. This organelle is limited by four membranes. The two outermost membranes are the chloroplast endoplasmic reticulum membrane (cERM), which is continuous with the host outer nuclear envelope, and the periplastidial membrane (PPM). The two innermost membranes correspond to the outer and inner envelope membranes (oEM and iEM) of the symbiont's chloroplast. Between the PPM and oEM lies a minimized symbiont cytoplasm, the periplastidial compartment (PPC). In Phaeodactylum tricornutum , PPC-resident proteins are localized in “blob-like-structures”, which remain associated with plastids after cell disruption. We analyzed disrupted Phaeodactylum cells by focused ion beam scanning electron microscopy, revealing the presence of a vesicular network (VN) in the PPC, at a location consistent with blob-like structures. Presence of a VN in the PPC was confirmed in intact cells. Additionally, direct membrane contacts were observed between the PPM and nuclear inner envelope membrane at the level of the chloroplast-nucleus isthmus. This study provides insights into the PPC ultrastructure and opens perspectives on the function of this residual cytoplasm of red algal origin. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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26. Energetic coupling between plastids and mitochondria drives CO2 assimilation in diatoms.
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Bailleul, Benjamin, Berne, Nicolas, Murik, Omer, Petroutsos, Dimitris, Prihoda, Judit, Tanaka, Atsuko, Villanova, Valeria, Bligny, Richard, Flori, Serena, Falconet, Denis, Krieger-Liszkay, Anja, Santabarbara, Stefano, Rappaport, Fabrice, Joliot, Pierre, Tirichine, Leila, Falkowski, Paul G., Cardol, Pierre, Bowler, Chris, and Finazzi, Giovanni
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PLASTIDS ,MITOCHONDRIA ,DIATOMS ,CARBON dioxide ,ABSORPTION ,LITHOSPHERE ,CARBON fixation ,ADENOSINE triphosphatase - Abstract
Diatoms are one of the most ecologically successful classes of photosynthetic marine eukaryotes in the contemporary oceans. Over the past 30 million years, they have helped to moderate Earth's climate by absorbing carbon dioxide from the atmosphere, sequestering it via the biological carbon pump and ultimately burying organic carbon in the lithosphere. The proportion of planetary primary production by diatoms in the modern oceans is roughly equivalent to that of terrestrial rainforests. In photosynthesis, the efficient conversion of carbon dioxide into organic matter requires a tight control of the ATP/NADPH ratio which, in other photosynthetic organisms, relies principally on a range of plastid-localized ATP generating processes. Here we show that diatoms regulate ATP/NADPH through extensive energetic exchanges between plastids and mitochondria. This interaction comprises the re-routing of reducing power generated in the plastid towards mitochondria and the import of mitochondrial ATP into the plastid, and is mandatory for optimized carbon fixation and growth. We propose that the process may have contributed to the ecological success of diatoms in the ocean. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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27. Adjustments of embryonic photosynthetic activity modulate seed fitness in Arabidopsis thaliana.
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Allorent, Guillaume, Osorio, Sonia, Ly Vu, Joseph, Falconet, Denis, Jouhet, Juliette, Kuntz, Marcel, Fernie, Alisdair R., Lerbs‐Mache, Silva, Macherel, David, Courtois, Florence, and Finazzi, Giovanni
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ARABIDOPSIS thaliana ,PHOTOSYNTHESIS ,CHLOROPLASTS ,PLASTIDS ,BRASSICACEAE - Abstract
In this work, we dissect the physiological role of the transient photosynthetic stage observed in developing seeds of Arabidopsis thaliana., By combining biochemical and biophysical approaches, we demonstrate that despite similar features of the photosynthetic apparatus, light absorption, chloroplast morphology and electron transport are modified in green developing seeds, as a possible response to the peculiar light environment experienced by them as a result of sunlight filtration by the pericarp. In particular, enhanced exposure to far-red light, which mainly excites photosystem I, largely enhances cyclic electron flow around this complex at the expenses of oxygen evolution., Using pharmacological, genetic and metabolic analyses, we show that both linear and cyclic electron flows are important during seed formation for proper germination timing. Linear flow provides specific metabolites related to oxygen and water stress responses. Cyclic electron flow possibly adjusts the ATP to NADPH ratio to cope with the specific energy demand of developing seeds., By providing a comprehensive scenario of the characteristics, function and consequences of embryonic photosynthesis on seed vigour, our data provide a rationale for the transient building up of a photosynthetic machinery in seeds. [ABSTRACT FROM AUTHOR]
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- 2015
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28. Metabolic transformation of microalgae due to light acclimation and genetic modifications followed by laser ablation electrospray ionization mass spectrometry with ion mobility separation.
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Stopka, Sylwia A., Shrestha, Bindesh, Maréchal, Éric, Falconet, Denis, and Vertes, Akos
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MICROALGAE ,LASER ablation ,ELECTROSPRAY ionization mass spectrometry ,ION mobility spectroscopy ,PHYTOPLANKTON ,METABOLITE synthesis ,SUSTAINABLE chemistry - Abstract
Metabolic profiling of various microalga species and their genetic variants, grown under varied environmental conditions, has become critical to accelerate the exploration of phytoplankton biodiversity and biology. The accumulation of valuable metabolites, such as glycerolipids, is also sought in microalgae for biotechnological applications ranging from food, feed, medicine, cosmetics to bioenergy and green chemistry. In this report we describe the direct analysis of metabolites and lipids in small cell populations of the green alga Chlamydomonas reinhardtii, using laser ablation electrospray ionization (LAESI) mass spectrometry (MS) coupled with ion mobility separation (IMS). These microorganisms are capable of redirecting energy storage pathways from starch to neutral lipids depending on environmental conditions and nutrient availability. Metabolite and lipid productions were monitored in wild type (WT), and genetically modified C. reinhardtii strains with an impaired starch pathway. Lipids, such as triacylglycerols (TAG) and diacylglyceryl-N,N,N-trimethylhomoserine (DGTS), were monitored over time under altered light conditions. More than 200 ions related to metabolites, e.g., arginine, cysteine, serine, palmitate, chlorophyll a, chlorophyll b, etc., were detected. The lipid profiles at different light intensities for strains with impaired starch pathway (Sta1 and Sta6) contained 26 glycerolipids, such as DGTS, monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol (DGDG), as well as 33 TAG species. Results were obtained over a 72 hour time period under high and low light conditions for the WT species and the two mutants. Our results indicate that LAESI-IMS-MS can be utilized for the rapid analysis of increased TAG production at elevated light intensities. Compared to WT, the Sta6 strain showed 2.5 times higher lipid production at 72 hours under high light conditions. The results demonstrate our ability to rapidly observe numerous changes in metabolite and lipid levels in microalgal population. These capabilities are expected to facilitate the exploration of genetically altered microalgal strains for biofuel production. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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29. The selective biotin tagging and thermolysin proteolysis of chloroplast outer envelope proteins reveals information on protein topology and association into complexes.
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Hardré, Hélène, Kuhn, Lauriane, Albrieux, Catherine, Jouhet, Juliette, Michaud, Morgane, Seigneurin-Berny, Daphné, Falconet, Denis, Block, Maryse A., and Maréchal, Eric
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BIOTIN synthase ,BIOTIN metabolism ,TRANSFERASE regulation ,TRANSFERASE genetics ,MASS spectrometry - Abstract
The understanding of chloroplast function requires the precise localization of proteins in each of its sub-compartments. High-sensitivity mass spectrometry has allowed the inventory of proteins in thylakoid, stroma, and envelope fractions. Concerning membrane association, proteins can be either integral or peripheral or even soluble proteins bound transiently to a membrane complex. We sought a method providing information at the surface of the outer envelope membrane (OEM), based on specific tagging with biotin or proteolysis using thermolysin, a non-membrane permeable protease. To evaluate this method, envelope, thylakoid, and stroma proteins were separated by two-dimensional electrophoresis and analyzed by immunostaining and mass spectrometry. A short selection of proteins associated to the chloroplast envelope fraction was checked after superficial treatments of intact chloroplasts. We showed that this method could allow the characterization of OEM embedded proteins facing the cytosol, as well as peripheral and soluble proteins associated via tight or lose interactions. Some stromal proteins were associated with biotinylated spots and analyzes are still needed to determine whether polypeptides were tagged prior import or if they co-migrated with OEM proteins. This method also suggests that some proteins associated with the inner envelope membrane (IEM) might need the integrity of a trans-envelope (IEM-OEM) protein complex (e.g., division ring-forming components) or at least an intact OEM partner. Following this evaluation, proteomic analyzes should be refined and the putative role of inter-membrane space components stabilizing trans-envelope complexes demonstrated. For future comprehensive studies, perspectives include the dynamic analyses of OEM proteins and IEM-OEM complexes in various physiological contexts and using virtually any other purified membrane organelle. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
30. Chemical inhibitors of monogalactosyldiacylglycerol synthases in Arabidopsis thaliana.
- Author
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Botté, Cyrille Y, Deligny, Michael, Roccia, Aymeric, Bonneau, Anne-Laure, Saïdani, Nadia, Hardré, Hélène, Aci, Samia, Yamaryo-Botté, Yoshiki, Jouhet, Juliette, Dubots, Emmanuelle, Loizeau, Karen, Bastien, Olivier, Bréhélin, Laurent, Joyard, Jacques, Cintrat, Jean-Christophe, Falconet, Denis, Block, Maryse A, Rousseau, Bernard, Lopez, Roman, and Maréchal, Eric
- Subjects
CHEMICAL inhibitors ,ARABIDOPSIS ,LIPID synthesis ,PLANT cells & tissues ,DIGLYCERIDES ,PHOSPHOLIPIDS - Abstract
Monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol (DGDG) are the main lipids in photosynthetic membranes in plant cells. They are synthesized in the envelope surrounding plastids by MGD and DGD galactosyltransferases. These galactolipids are critical for the biogenesis of photosynthetic membranes, and they act as a source of polyunsaturated fatty acids for the whole cell and as phospholipid surrogates in phosphate shortage. Based on a high-throughput chemical screen, we have characterized a new compound, galvestine-1, that inhibits MGDs in vitro by competing with diacylglycerol binding. Consistent effects of galvestine-1 on Arabidopsis thaliana include root uptake, circulation in the xylem and mesophyll, inhibition of MGDs in vivo causing a reduction of MGDG content and impairment of chloroplast development. The effects on pollen germination shed light on the contribution of galactolipids to pollen-tube elongation. The whole-genome transcriptional response of Arabidopsis points to the potential benefits of galvestine-1 as a unique tool to study lipid homeostasis in plants. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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- View/download PDF
31. An Oil Hyper-Accumulator Mutant Highlights Peroxisomal ATP Import as a Regulatory Step for Fatty Acid Metabolism in Aurantiochytrium limacinum.
- Author
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Deragon, Etienne, Schuler, Martin, Aiese Cigliano, Riccardo, Dellero, Younès, Si Larbi, Gregory, Falconet, Denis, Jouhet, Juliette, Maréchal, Eric, Michaud, Morgane, Amato, Alberto, and Rébeillé, Fabrice
- Subjects
RNA sequencing ,FATTY acids ,RECOMBINANT DNA ,DELETION mutation ,PHENOTYPES ,UNSATURATED fatty acids ,PETROLEUM - Abstract
Thraustochytrids are marine protists that naturally accumulate triacylglycerol with long chains of polyunsaturated fatty acids, such as ω3-docosahexaenoic acid (DHA). They represent a sustainable response to the increasing demand for these "essential" fatty acids (FAs). Following an attempt to transform a strain of Aurantiochytrium limacinum, we serendipitously isolated a clone that did not incorporate any recombinant DNA but contained two to three times more DHA than the original strain. Metabolic analyses indicated a deficit in FA catabolism. However, whole transcriptome analysis did not show down-regulation of genes involved in FA catabolism. Genome sequencing revealed extensive DNA deletion in one allele encoding a putative peroxisomal adenylate transporter. Phylogenetic analyses and yeast complementation experiments confirmed the gene as a peroxisomal adenylate nucleotide transporter (AlANT1), homologous to yeast ScANT1 and plant peroxisomal adenylate nucleotide carrier AtPNC genes. In yeast and plants, a deletion of the peroxisomal adenylate transporter inhibits FA breakdown and induces FA accumulation, a phenotype similar to that described here. In response to this metabolic event, several compensatory mechanisms were observed. In particular, genes involved in FA biosynthesis were upregulated, also contributing to the high FA accumulation. These results support AlANT1 as a promising target for enhancing DHA production in Thraustochytrids. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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- View/download PDF
32. An active ribonucleotide reductase from Arabidopsis thaliana.
- Author
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Sauge-Merle, Sandrine, Falconet, Denis, and Fontecave, Marc
- Subjects
- *
ARABIDOPSIS thaliana , *RIBOSOMES - Abstract
Examines the characterization of an active ribonucleotide reductase (RNR) from Arabidopsis thaliana. Reduction of ribonucleotide; Presence of iron-radical center; Similarity between mammalian and A. thaliana RNR.
- Published
- 1999
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33. A plant surface protein sharing structural properties with animal integrins.
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Faik, Ahmed, Labouré, Anne Marie, Gulino, Danielle, Mandaron, Paul, and Falconet, Denis
- Subjects
PROTOPLASTS ,MONOCLONAL antibodies ,IMMUNOGLOBULINS - Abstract
Using a polyclonal antibody (P23) generated against the human platelet integrin αIIbβ3 and a FITC-conjugate secondary antibody, fluorescence is observed at the surface of protoplasts isolated from Arabidopsis thaliana and Rubus fruticosus. Arabidopsis thaliana cells grown in suspension culture containing P23 and glycylarginylglycylaspartylserine (GRGDS), a synthetic peptide containing the RGD sequence found in many extracellular matrix adhesive proteins demonstrated aberrant cell wall/plasma membrane interactions and organization. When glycoproteins from these plants, purified on a concanavalin A Sepharose 4B, were subjected to SDS/PAGE and Western blotting, under reduced and non-reduced conditions, immunoblots probed with P23 revealed bands in both species. A shift in electrophoretic mobility is observed to different apparent molecular mass when no reducing agent is present. When purified by immunoaffinity chromatography on anti-αIIbβ3 Sepharose or Sepharose linked to the synthetic peptide D-Arg-Gly-Asp-Trp, the major antigenic components detected migrate at 30 kDa and 60 kDa in the first experiment and 60 kDa in the second one. Only the 60-kDa component is immunodetected with antibodies specific for either the β3 platelet chain or the αIIb polypeptide, suggesting the presence of two polypeptides co-migrating. To address more precisely the structure of this complex in plants, competition assays were performed. A significant inhibition is observed with CS3 a monoclonal antibody that interacts with the complexed form αIIbβ3 but not the dissociated subunits. Further structural similarities with the animal αIIbβ3 complex is demonstrated with Western blotting detection after plant glycoproteins immunoprecipitation with CS3 in absence or presence of 5 mM EDTA to dissociate the complex. We also present data on the characterization of a polyclonal antibody, named AcAt2, raised against Arabidopsis glycocoproteins... [ABSTRACT FROM AUTHOR]
- Published
- 1998
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34. Nucleotide sequence of Cab-8, a new type I gene encoding a chlorophyll a/b-binding protein of LHC II in Pisum.
- Author
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Alexander, Laura, Falconet, Denis, Fristensky, Brian, White, Michael, Watson, John, Roe, Bruce, and Thompson, William
- Published
- 1991
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35. Nucleotide sequence of Cab-215, a Type II gene encoding a photosystem II chlorophyll a/b-binding protein in Pisum.
- Author
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Falconet, Denis, White, Michael, Fristensky, Brian, Dobres, Michael, and Thompson, William
- Published
- 1991
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36. The architecture of lipid droplets in the diatom Phaeodactylum tricornutum.
- Author
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Lupette, Josselin, Jaussaud, Antoine, Seddiki, Khawla, Morabito, Christian, Brugière, Sabine, Schaller, Hubert, Kuntz, Marcel, Putaux, Jean-Luc, Jouneau, Pierre-Henri, Rébeillé, Fabrice, Falconet, Denis, Couté, Yohann, Jouhet, Juliette, Tardif, Marianne, Salvaing, Juliette, and Maréchal, Eric
- Abstract
Abstract Diatoms are a major phylum of phytoplankton biodiversity and a resource considered for biotechnological developments, as feedstock for biofuels and applications ranging from food, human health or green chemistry. They contain a secondary plastid limited by four membranes, the outermost one being connected with the endoplasmic reticulum (ER). Upon nitrogen stress, diatoms reallocate carbon to triacylglycerol storage inside lipid droplets (LDs). The comprehensive glycerolipid and sterol composition and the architecture of diatom LDs are unknown. In Phaeodactylum tricornutum , LDs are in contact with plastid, mitochondria and uncharacterized endomembranes. We purified LDs from nitrogen-starved P. tricornutum cells to high purity level (99 mol% triacylglycerol of total glycerolipids). We used the Stramenopile Lipid Droplet Protein (StLDP) as a previously validated marker for the identity of P. tricornutum LD. Amphipathic lipids surrounding LDs consist of a betaine lipid, diacylglycerylhydroxymethyltrimethyl‑β‑alanine (0.4 mol%); sulfoquinovosyldiacylglycerol (0.35 mol%); phosphatidylcholine (0.15 mol%) and one sterol, brassicasterol. By contrast with whole cell extracts, the betaine lipid from LDs only contains eicosapentaenoic acid paired with palmitoleic or palmitolenic acids. This polar lipid composition suggests a budding of LDs from the cytosolic leaflet of the plastid outermost membrane. LD pigments reveal a specific accumulation of β ‑carotene. The LD proteome obtained from three independent biological replicates, based on stringent filtering of extracted data, and following subtraction of proteins downregulated by nitrogen starvation, highlights a core proteome of 86 proteins, including StLDP. LD-associated proteins suggest connections with vesicular trafficking (coatomer, clathrin), cytoskeleton, plastid and mitochondria. Unsuspected LD-associated function includes protein synthesis (ribosomes), folding (chaperones), posttranslational modifications and quality control (ubiquitination and ERAD pathway), possibly preparing translation of specific mRNAs. The detection of histone proteins, as previously demonstrated in drosophila embryo LDs, also suggests the storage of nucleosome components, preparing cell division and chromatin packaging, when cells are not stressed anymore. Highlights • Lipid droplets (LD) from nitrogen-starved Phaeodactylum tricornutum have been purified to unprecedented level of purity • Purified LDs contain 99% triacylglycerol and 1% of polar lipids (a betain lipid, a sulfolipid and phosphatidylcholine). • The betaine lipid from LDs only contains eicosapentaenoic acid paired with palmitoleic or palmitolenic acids • The LD proteome highlights connections with the outermost membrane of the plastid and the endomembrane vesicular system • The LD proteome suggests roles in protein expression, ubiquitination and quality control and a possible storage of histones [ABSTRACT FROM AUTHOR]
- Published
- 2019
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37. Plastid thylakoid architecture optimizes photosynthesis in diatoms.
- Author
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Flori, Serena, Jouneau, Pierre-Henri, Bailleul, Benjamin, Gallet, Benoit, Estrozi, Leandro F, Moriscot, Christine, Bastien, Olivier, Eicke, Simona, Schober, Alexander, Bártulos, Carolina Río, Maréchal, Eric, Kroth, Peter G, Petroutsos, Dimitris, Zeeman, Samuel, Breyton, Cécile, Schoehn, Guy, Falconet, Denis, and Finazzi, Giovanni
- Abstract
Photosynthesis is a unique process that allows independent colonization of the land by plants and of the oceans by phytoplankton. Although the photosynthesis process is well understood in plants, we are still unlocking the mechanisms evolved by phytoplankton to achieve extremely efficient photosynthesis. Here, we combine biochemical, structural and in vivo physiological studies to unravel the structure of the plastid in diatoms, prominent marine eukaryotes. Biochemical and immunolocalization analyses reveal segregation of photosynthetic complexes in the loosely stacked thylakoid membranes typical of diatoms. Separation of photosystems within subdomains minimizes their physical contacts, as required for improved light utilization. Chloroplast 3D reconstruction and in vivo spectroscopy show that these subdomains are interconnected, ensuring fast equilibration of electron carriers for efficient optimum photosynthesis. Thus, diatoms and plants have converged towards a similar functional distribution of the photosystems although via different thylakoid architectures, which likely evolved independently in the land and the ocean. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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- View/download PDF
38. A biological nanofoam: The wall of coniferous bisaccate pollen.
- Author
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Cojocaru, Ruxandra, Mannix, Oonagh, Capron, Marie, Miller, C. Giles, Jouneau, Pierre-Henri, Gallet, Benoit, Falconet, Denis, Pacureanu, Alexandra, and Stukins, Stephen
- Subjects
- *
POLLEN , *FOAM , *ATOMIC force microscopy , *BIOLOGICAL fitness , *MATERIALS science , *GEOLOGICAL time scales - Abstract
The outer layer of the pollen grain, the exine, plays a key role in the survival of terrestrial plant life. However, the exine structure in different groups of plants remains enigmatic. Here, modern and fossil coniferous bisaccate pollen were examined to investigate the detailed three-dimensional structure and properties of the pollen wall. X-ray nanotomography and volume electron microscopy are used to provide high-resolution imagery, revealing a solid nanofoam structure. Atomic force microscopy measurements were used to compare the pollen wall with other natural and synthetic foams and to demonstrate that the mechanical properties of the wall in this type of pollen are retained for millions of years in fossil specimens. The microscopic structure of this robust biological material has potential applications in materials sciences and also contributes to our understanding of the evolutionary success of conifers and other plants over geological time. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
39. Differential impacts of FtsZ proteins on plastid division in the shoot apex of Arabidopsis.
- Author
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Swid, Neora, Nevo, Reinat, Kiss, Vladimir, Kapon, Ruti, Dagan, Shlomi, Snir, Orli, Adam, Zach, Falconet, Denis, Reich, Ziv, and Charuvi, Dana
- Subjects
- *
PLASTIDS , *ARABIDOPSIS , *CHLOROPLASTS , *MESOPHYLL tissue , *FATE mapping (Genetics) - Abstract
FtsZ proteins of the FtsZ1 and FtsZ2 families play important roles in the initiation and progression of plastid division in plants and green algae. Arabidopsis possesses a single FTSZ1 member and two FTSZ2 members, FTSZ2-1 and FTSZ2-2 . The contribution of these to chloroplast division and partitioning has been mostly investigated in leaf mesophyll tissues. Here, we assessed the involvement of the three FtsZs in plastid division at earlier stages of chloroplast differentiation. To this end, we studied the effect of the absence of specific FtsZ proteins on plastids in the vegetative shoot apex, where the proplastid-to-chloroplast transition takes place. We found that the relative contribution of the two major leaf FtsZ isoforms, FtsZ1 and FtsZ2-1, to the division process varies with cell lineage and position within the shoot apex. While FtsZ2-1 dominates division in the L1 and L3 layers of the shoot apical meristem (SAM), in the L2 layer, FtsZ1 and FtsZ2-1 contribute equally toward the process. Depletion of the third isoform, FtsZ2-2, generally resulted in stronger effects in the shoot apex than those observed in mature leaves. The implications of these findings, along with additional observations made in this work, to our understanding of the mechanisms and regulation of plastid proliferation in the shoot apex are discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
40. Chloroplast tomography allows revisiting diatoms photosynthesis.
- Author
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Flori, Serena, Petroutsos, Dimitris, Falconet, Denis, and Finazzi, Giovanni
- Subjects
- *
CHLOROPLASTS , *TOMOGRAPHY , *DIATOMS , *PHOTOSYNTHESIS , *ELECTRON microscopy - Published
- 2016
- Full Text
- View/download PDF
41. AtMic60 Is Involved in Plant Mitochondria Lipid Trafficking and Is Part of a Large Complex.
- Author
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Michaud, Morgane, Gros, Valérie, Tardif, Marianne, Brugière, Sabine, Ferro, Myriam, Prinz, William A., Toulmay, Alexandre, Mathur, Jaideep, Wozny, Michael, Falconet, Denis, Maréchal, Eric, Block, Maryse A., and Jouhet, Juliette
- Subjects
- *
MEMBRANE proteins , *PLANT mitochondria , *LIPID metabolism , *MITOCHONDRIA formation , *ENDOSYMBIOSIS , *METABOLITE synthesis , *MITOCHONDRIAL membranes , *ARABIDOPSIS proteins - Abstract
Summary The mitochondrion is an organelle originating from an endosymbiotic event and playing a role in several fundamental processes such as energy production, metabolite syntheses, and programmed cell death. This organelle is delineated by two membranes whose synthesis requires an extensive exchange of phospholipids with other cellular organelles such as endoplasmic reticulum (ER) and vacuolar membranes in yeast. These transfers of phospholipids are thought to occur by a non-vesicular pathway at contact sites between two closely apposed membranes. In plants, little is known about the biogenesis of mitochondrial membranes. Contact sites between ER and mitochondria are suspected to play a similar role in phospholipid trafficking as in yeast, but this has never been demonstrated. In contrast, it has been shown that plastids are able to transfer lipids to mitochondria during phosphate starvation. However, the proteins involved in such transfer are still unknown. Here, we identified in Arabidopsis thaliana a large lipid-enriched complex called the mitochondrial transmembrane lipoprotein (MTL) complex. The MTL complex contains proteins located in the two mitochondrial membranes and conserved in all eukaryotic cells, such as the TOM complex and AtMic60, a component of the MICOS complex. We demonstrate that AtMic60 contributes to the export of phosphatidylethanolamine from mitochondria and the import of galactoglycerolipids from plastids during phosphate starvation. Furthermore, AtMic60 promotes lipid desorption from membranes, likely as an initial step for lipid transfer, and binds to Tom40, suggesting that AtMic60 could regulate the tethering between the inner and outer membranes of mitochondria. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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- View/download PDF
42. Ocean phytoplankton architectures are governed by bioenergetic constraints.
- Author
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Uwizeye, Clarisse, Storti, Mattia, Hsine, Haythem, Jouneau, Pierre-Henri, Gallet, Benoit, Chevalier, Fabien, Falconet, Denis, Tolleter, Dimitri, Decelle, Johan, and Finazzi, Giovanni
- Subjects
- *
OCEAN , *PHYTOPLANKTON - Published
- 2022
- Full Text
- View/download PDF
43. Glycerolipids in photosynthesis: Composition, synthesis and trafficking.
- Author
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Boudière, Laurence, Michaud, Morgane, Petroutsos, Dimitris, Rébeillé, Fabrice, Falconet, Denis, Bastien, Olivier, Roy, Sylvaine, Finazzi, Giovanni, Rolland, Norbert, Jouhet, Juliette, Block, Maryse A., and Maréchal, Eric
- Subjects
- *
GLYCEROLIPIDS , *PHOTOSYNTHESIS , *CYANOBACTERIA , *CHLOROPLASTS , *EUKARYOTIC cells , *LECITHIN - Abstract
Abstract: Glycerolipids constituting the matrix of photosynthetic membranes, from cyanobacteria to chloroplasts of eukaryotic cells, comprise monogalactosyldiacylglycerol, digalactosyldiacylglycerol, sulfoquinovosyldiacylglycerol and phosphatidylglycerol. This review covers our current knowledge on the structural and functional features of these lipids in various cellular models, from prokaryotes to eukaryotes. Their relative proportions in thylakoid membranes result from highly regulated and compartmentalized metabolic pathways, with a cooperation, in the case of eukaryotes, of non-plastidic compartments. This review also focuses on the role of each of these thylakoid glycerolipids in stabilizing protein complexes of the photosynthetic machinery, which might be one of the reasons for their fascinating conservation in the course of evolution. This article is part of a Special Issue entitled: Dynamic and ultrastructure of bioenergetic membranes and their components. [Copyright &y& Elsevier]
- Published
- 2014
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44. Evolution of galactoglycerolipid biosynthetic pathways – From cyanobacteria to primary plastids and from primary to secondary plastids.
- Author
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Petroutsos, Dimitris, Amiar, Souad, Abida, Heni, Dolch, Lina-Juana, Bastien, Olivier, Rébeillé, Fabrice, Jouhet, Juliette, Falconet, Denis, Block, Maryse A., McFadden, Geoffrey I., Bowler, Chris, Botté, Cyrille, and Maréchal, Eric
- Subjects
- *
GLYCEROLIPIDS , *LIPID synthesis , *CYANOBACTERIA , *PLASTIDS , *CHLOROPLASTS - Abstract
Abstract: Photosynthetic membranes have a unique lipid composition that has been remarkably well conserved from cyanobacteria to chloroplasts. These membranes are characterized by a very high content in galactoglycerolipids, i.e., mono- and digalactosyldiacylglycerol (MGDG and DGDG, respectively). Galactoglycerolipids make up the bulk of the lipid matrix in which photosynthetic complexes are embedded. They are also known to fulfill specific functions, such as stabilizing photosystems, being a source of polyunsaturated fatty acids for various purposes and, in some eukaryotes, being exported to other subcellular compartments. The conservation of MGDG and DGDG suggests that selection pressures might have conserved the enzymes involved in their biosynthesis, but this does not appear to be the case. Important evolutionary transitions comprise primary endosymbiosis (from a symbiotic cyanobacterium to a primary chloroplast) and secondary endosymbiosis (from a symbiotic unicellular algal eukaryote to a secondary plastid). In this review, we compare biosynthetic pathways based on available molecular and biochemical data, highlighting enzymatic reactions that have been conserved and others that have diverged or been lost, as well as the emergence of parallel and alternative biosynthetic systems originating from other metabolic pathways. Questions for future research are highlighted. [Copyright &y& Elsevier]
- Published
- 2014
- Full Text
- View/download PDF
45. Monogalactosyldiacylglycerol synthase isoforms play diverse roles inside and outside the diatom plastid.
- Author
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Guéguen N, Sérès Y, Cicéron F, Gros V, Si Larbi G, Falconet D, Deragon E, Gueye SD, Le Moigne D, Schilling M, Cussac M, Petroutsos D, Hu H, Gong Y, Michaud M, Jouhet J, Salvaing J, Amato A, and Maréchal E
- Abstract
Diatoms derive from a secondary endosymbiosis event, which occurred when a eukaryotic host cell engulfed a red alga. This led to the formation of a complex plastid enclosed by four membranes: two innermost membranes originating from the red alga chloroplast envelope, and two additional peri- and epiplastidial membranes (PPM, EpM). The EpM is linked to the endoplasmic reticulum (ER). The most abundant membrane lipid in diatoms is monogalactosyldiacylglycerol (MGDG), synthesized by galactosyltransferases called MGDG synthases (MGDs), conserved in photosynthetic eukaryotes and considered to be specific to chloroplast membranes. Similar to angiosperms, a multigenic family of MGDs has evolved in diatoms, but through an independent process. We characterized MGDα, MGDβ and MGDγ in Phaeodactylum tricornutum, combining molecular analyses, heterologous expression in Saccharomyces cerevisiae, and studying overexpressing and CRISPR-Cas9-edited lines. MGDα localizes mainly to thylakoids, MGDβ to the PPM, and MGDγ to the ER and EpM. MGDs have distinct specificities for diacylglycerol, consistent with their localization. Results suggest that MGDα is required for thylakoid expansion under optimal conditions, while MGDβ and MGDγ play roles in plastid and non-plastid membranes and in response to environmental stress. Functional compensation among MGDs likely contributes to diatom resilience under adverse conditions and to their ecological success., (© The Author(s) 2024. Published by Oxford University Press on behalf of American Society of Plant Biologists.)
- Published
- 2024
- Full Text
- View/download PDF
46. The Arabidopsis leaf quantitative atlas: a cellular and subcellular mapping through unified data integration.
- Author
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Tolleter D, Smith EN, Dupont-Thibert C, Uwizeye C, Vile D, Gloaguen P, Falconet D, Finazzi G, Vandenbrouck Y, and Curien G
- Abstract
Quantitative analyses and models are required to connect a plant's cellular organisation with its metabolism. However, quantitative data are often scattered over multiple studies, and finding such data and converting them into useful information is time-consuming. Consequently, there is a need to centralise the available data and to highlight the remaining knowledge gaps. Here, we present a step-by-step approach to manually extract quantitative data from various information sources, and to unify the data format. First, data from Arabidopsis leaf were collated, checked for consistency and correctness and curated by cross-checking sources. Second, quantitative data were combined by applying calculation rules. They were then integrated into a unique comprehensive, referenced, modifiable and reusable data compendium representing an Arabidopsis reference leaf. This atlas contains the metrics of the 15 cell types found in leaves at the cellular and subcellular levels., Competing Interests: The authors declare they have no competing interests., (© The Author(s) 2024.)
- Published
- 2024
- Full Text
- View/download PDF
47. Imaging Plastids in 2D and 3D: Confocal and Electron Microscopy.
- Author
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Flori S, Jouneau PH, Gallet B, Estrozi LF, Moriscot C, Schoehn G, Finazzi G, and Falconet D
- Subjects
- Arabidopsis metabolism, Arabidopsis ultrastructure, Imaging, Three-Dimensional, Microscopy, Confocal, Microscopy, Electron, Molecular Imaging, Plastids metabolism, Plastids ultrastructure
- Abstract
Internal chloroplast structures present complex and various characteristics, which are still largely undetermined due to insufficient imaging investigation. Information on chloroplast morphology has traditionally been collected using light microscopy (LM), confocal laser scanning microscopy (CLSM), transmission electron microscopy (TEM), and scanning electron microscopy (SEM) techniques. However, recent technological progresses in the field of microscopy have made it possible to visualize the internal structure of chloroplast in far greater detail and in 3D. Here we recapitulate protocols to visualize chloroplasts from Arabidopsis leaves and Phaeodactylum tricornutum cells with confocal and transmission electron microscopy together with a new technique using a focused ion beam-scanning electron microscope (FIB-SEM) allowing for 3D imaging.
- Published
- 2018
- Full Text
- View/download PDF
48. Galvestine-1, a novel chemical probe for the study of the glycerolipid homeostasis system in plant cells.
- Author
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Boudière L, Botté CY, Saidani N, Lajoie M, Marion J, Bréhélin L, Yamaryo-Botté Y, Satiat-Jeunemaître B, Breton C, Girard-Egrot A, Bastien O, Jouhet J, Falconet D, Block MA, and Maréchal E
- Subjects
- Arabidopsis drug effects, Arabidopsis metabolism, Galactolipids metabolism, Homeostasis, Lipid Metabolism drug effects, Plant Cells drug effects, Glycerides metabolism, Piperidines pharmacology, Plant Cells metabolism
- Abstract
Plant cells are characterized by the presence of chloroplasts, membrane lipids of which contain up to ∼80% mono- and digalactosyldiacylglycerol (MGDG and DGDG). The synthesis of MGDG in the chloroplast envelope is essential for the biogenesis and function of photosynthetic membranes, is coordinated with lipid metabolism in other cell compartments and is regulated in response to environmental factors. Phenotypic analyses of Arabidopsis using the recently developed specific inhibitor called galvestine-1 complete previous analyses performed using various approaches, from enzymology, cell biology to genetics. This review details how this probe could be beneficial to study the lipid homeostasis system at the whole cell level and highlights connections between MGDG synthesis and Arabidopsis flower development.
- Published
- 2012
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- View/download PDF
49. Developmentally regulated association of plastid division protein FtsZ1 with thylakoid membranes in Arabidopsis thaliana.
- Author
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El-Kafafi el-S, Karamoko M, Pignot-Paintrand I, Grunwald D, Mandaron P, Lerbs-Mache S, and Falconet D
- Subjects
- Chlorophyll metabolism, Chloroplasts metabolism, Immunohistochemistry, Microscopy, Confocal, Microscopy, Electron, Transmission, Models, Biological, Organelles metabolism, Phenotype, Plant Proteins genetics, Stem Cells metabolism, Arabidopsis genetics, Arabidopsis physiology, Arabidopsis Proteins genetics, Gene Expression Regulation, Plant, Plant Proteins physiology, Plastids metabolism, Thylakoids metabolism
- Abstract
FtsZ is a key protein involved in bacterial and organellar division. Bacteria have only one ftsZ gene, while chlorophytes (higher plants and green alga) have two distinct FtsZ gene families, named FtsZ1 and FtsZ2. This raises the question of why chloroplasts in these organisms need distinct FtsZ proteins to divide. In order to unravel new functions associated with FtsZ proteins, we have identified and characterized an Arabidopsis thaliana FtsZ1 loss-of-function mutant. ftsZ1-knockout mutants are impeded in chloroplast division, and division is restored when FtsZ1 is expressed at a low level. FtsZ1-overexpressing plants show a drastic inhibition of chloroplast division. Chloroplast morphology is altered in ftsZ1, with chloroplasts having abnormalities in the thylakoid membrane network. Overexpression of FtsZ1 also induced defects in thylakoid organization with an increased network of twisting thylakoids and larger grana. We show that FtsZ1, in addition to being present in the stroma, is tightly associated with the thylakoid fraction. This association is developmentally regulated since FtsZ1 is found in the thylakoid fraction of young developing plant leaves but not in mature and old plant leaves. Our results suggest that plastid division protein FtsZ1 may have a function during leaf development in thylakoid organization, thus highlighting new functions for green plastid FtsZ.
- Published
- 2008
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- View/download PDF
50. The plastid division proteins, FtsZ1 and FtsZ2, differ in their biochemical properties and sub-plastidial localization.
- Author
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El-Kafafi el-S, Mukherjee S, El-Shami M, Putaux JL, Block MA, Pignot-Paintrand I, Lerbs-Mache S, and Falconet D
- Subjects
- Arabidopsis Proteins, Cell Membrane physiology, Escherichia coli genetics, Gene Expression, Organisms, Genetically Modified, Protein Binding, Nicotiana genetics, Cell Division physiology, Chloroplasts physiology, Escherichia coli metabolism, Plant Proteins metabolism, Nicotiana metabolism
- Abstract
Plastid division in higher plants is morphologically similar to bacterial cell division, with a process termed binary fission involving constriction of the envelope membranes. FtsZ proteins involved in bacterial division are also present in higher plants, in which the ftsZ genes belong to two distinct families: ftsZ1 and ftsZ2. However, the roles of the corresponding proteins FtsZ1 and FtsZ2 in plastid division have not been determined. Here we show that the expression of plant FtsZ1 and FtsZ2 in bacteria has different effects on cell division, and that distinct protein domains are involved in the process. We have studied the assembly of purified FtsZ1 and FtsZ2 using a chemical cross-linking approach followed by PAGE and electron microscopy analyses of the resulting polymers. This has revealed that FtsZ1 is capable of forming long rod-shaped polymers and rings similar to the bacterial FtsZ structures, whereas FtsZ2 does not form any organized polymer. Moreover, using purified sub-plastidial fractions, we show that both proteins are present in the stroma, and that a subset of FtsZ2 is tightly bound to the purified envelope membranes. These results indicate that FtsZ2 has a localization pattern distinct from that of FtsZ1, which can be related to distinct properties of the proteins. From the results presented here, we propose a model for the sequential topological localization and functions of green plant FtsZ1 and FtsZ2 in chloroplast division.
- Published
- 2005
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