89 results on '"Bloem, Jaap"'
Search Results
2. Effects of organic and inorganic fertilizers on soil properties related to the regeneration of ecosystem services in peat grasslands
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Deru, Joachim G.C., Bloem, Jaap, de Goede, Ron, Brussaard, Lijbert, and van Eekeren, Nick
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- 2023
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3. Role of soil fungi in nitrogen cycling
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de Vries, Franciska T., Bloem, Jaap, and Hoffland, Ellis
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Nutrient Management for Optimal Productivity and Sustainability ,nitrogen ,fungi ,soil ,leaching ,denitrification - Abstract
It is often suggested but so far not substantiated that soils with a higher fungal/bacterial (F/B) ratio retain nitrogen better. If this were true, it would be wise for farmers who want to reduce the environmental impact to increase this F/B ratio. We did field studies on experimental plots and on commercial farms and found that lower fertilizer rates led to higher fungal biomass in grassland soils. In incubation studies with intact soil columns we showed that soil with a higher fungal biomass had lower leaching and denitrification rates because of lower mineralization and nitrification rates while maintaining production levels.
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- 2009
4. Soil aggregation and soil organic matter in conventionally and organically farmed Austrian Chernozems / Bodenaggregation und organische Substanz in konventionell und biologisch bewirtschafteten österreichischen Tschernosemböden
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Sandén Taru, Lair Georg J., van Leeuwen Jeroen P., Gísladóttir Guðrún, Bloem Jaap, Ragnarsdóttir Kristín Vala, Steffens Markus, and Blum Winfried E.H.
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organic matter dynamics ,aggregate stability ,solid-state 13c nmr spectroscopy ,particulate organic matter (pom) ,aggregate hierarchy ,dynamik der organischen substanz ,aggregatstabilität ,festkörper-13c-nmr-spektroskopie ,partikuläre organische substanz ,aggregathierarchie ,Environmental sciences ,GE1-350 - Abstract
In order to study the soil aggregate distributions and soil organic matter (SOM), we sampled top- and subsoils in four intensively farmed croplands (two organic (Org-OB and Org-LA), and two conventional (Con-OB and Con-LA)) on Haplic Chernozems located in Marchfeld in the east of Vienna (Austria). Soil structure and SOM quantity, quality and distribution between free and occluded particulate organic matter and aggregate size fractions (
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- 2017
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5. Linking soil biodiversity and agricultural soil management
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Thiele-Bruhn, Sören, Bloem, Jaap, de Vries, Franciska T, Kalbitz, Karsten, and Wagg, Cameron
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- 2012
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6. Soil processes and functions across an international network of Critical Zone Observatories: Introduction to experimental methods and initial results
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Banwart, Steven, Menon, Manoj, Bernasconi, Stefano M., Bloem, Jaap, Blum, Winfried E.H., Souza, Danielle Maia de, Davidsdotir, Brynhildur, Duffy, Christopher, Lair, Georg J., Kram, Pavel, Lamacova, Anna, Lundin, Lars, Nikolaidis, Nikolaos P., Novak, Martin, Panagos, Panos, Ragnarsdottir, Kristin Vala, Reynolds, Brian, Robinson, David, Rousseva, Svetla, de Ruiter, Peter, van Gaans, Pauline, Weng, Liping, White, Tim, and Zhang, Bin
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- 2012
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7. Effects of Ca:Mg ratio and pH on soil chemical, physical and microbiological properties and grass N yield in drained peat soil.
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Deru, Joachim G. C., Hoekstra, Nyncke, van Agtmaal, Maaike, Bloem, Jaap, de Goede, Ron, Brussaard, Lijbert, and van Eekeren, Nick
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PEAT soils ,SOIL acidity ,GRASSLAND soils ,PH effect ,GRASSES ,SOIL erosion - Abstract
In three dairy grasslands on peat, minerals were added to manipulate the soil Ca:Mg ratio with or without effect on pH. The responses of soil properties and grass N yield were measured. CaCO
3 application led to higher soil Ca:Mg ratio and pHKCl compared to the untreated control, decreased Ntotal and Ctotal , and increased P availability. Grass N yield increased in the first year by only 6% of the reduction in soil Ntotal , but not in the second year. A higher pH increased SOM decomposition, especially in soils with high P availability. MgCO3 reduced the Ca:Mg ratio, had little influence on soil parameters and no effect on grass N yield. In contrast, CaSO4 and MgSO4 did not influence pHKCl but reduced grass N yield in most cases. Results suggest stabilisation of organic matter by Ca binding in treatments with added Ca. We conclude that grass N yield was not linked with changes in Ca:Mg ratio but with soil pH. The pH effects on SOM decomposition depended on P availability and Ca binding. Hence, to avoid potentially large soil losses of C and N, the current agricultural advice on pH management in peat grasslands should be better adapted to local edaphic characteristics. [ABSTRACT FROM AUTHOR]- Published
- 2023
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8. Sediment provenance, soil development, and carbon content in fluvial and manmade terraces at Koiliaris River Critical Zone Observatory
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Moraetis, Daniel, Paranychianakis, Nikolaos V., Nikolaidis, Nikolaos P., Banwart, Steve A., Rousseva, Svetla, Kercheva, Milena, Nenov, Martin, Shishkov, Toma, de Ruiter, Peter, Bloem, Jaap, Blum, W. E. H., Lair, G. J., van Gaans, Pauline, and Verheul, Marc
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- 2015
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9. Soil biota community structure and abundance under agricultural intensification and extensification
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Postma-Blaauw, Maria B., de Goede, Ron G. M., Bloem, Jaap, Faber, Jack H., and Brussaard, Lijbert
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- 2010
10. SoilTrEC: a global initiative on critical zone research and integration
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Menon, Manoj, Rousseva, Svetla, Nikolaidis, Nikolaos P., van Gaans, Pauline, Panagos, Panos, de Souza, Danielle Maia, Ragnarsdottir, Kristin Vala, Lair, Georg J., Weng, Liping, Bloem, Jaap, Kram, Pavel, Novak, Martin, Davidsdottir, Brynhildur, Gisladottir, Gudrun, Robinson, David A., Reynolds, Brian, White, Tim, Lundin, Lars, Zhang, Bin, Duffy, Christopher, Bernasconi, Stefano M., de Ruiter, Peter, Blum, Winfried E. H., and Banwart, Steven A.
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- 2014
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11. Bacterial Activity and Protozoan Grazing Potential in a Stratified Lake
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Bloem, Jaap and Bar-Gilissen, Marie-Jose B.
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- 1989
12. Soil biological quality of grassland fertilized with adjusted cattle manure slurries in comparison with organic and inorganic fertilizers
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van Eekeren, Nick, de Boer, Herman, Bloem, Jaap, Schouten, Ton, Rutgers, Michiel, de Goede, Ron, and Brussaard, Lijbert
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- 2009
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13. Enumeration and biovolume determination of microbial cells – a methodological review and recommendations for applications in ecological research
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Bölter, Manfred, Bloem, Jaap, Meiners, Klaus, and Möller, Rolf
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- 2002
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14. Extending grassland age for climate change mitigation and adaptation on clay soils.
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Iepema, Goaitske, Hoekstra, Nyncke J., de Goede, Ron, Bloem, Jaap, Brussaard, Lijbert, and van Eekeren, Nick
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GRASSLAND soils ,CLIMATE change mitigation ,CLAY soils ,SOIL infiltration ,GRASSLANDS ,MEADOWS ,DROUGHTS ,CARBON sequestration - Abstract
Permanent grassland soils can act as a sink for carbon and may therefore positively contribute to climate change mitigation and adaptation. We compared young (5–15 years since latest grassland renewal) with old (>20 years since latest grassland renewal) permanent grassland soils in terms of carbon stock, carbon sequestration, drought tolerance and flood resistance. The research was carried out on marine clay soil at 10 dairy farms with young and old permanent grassland. As hypothesized, the carbon stock was larger in old grassland (62 Mg C ha−1) topsoil (0–10 cm) than in young grassland topsoil (51 Mg C ha−1). The carbon sequestration rate was greater in young (on average 3.0 Mg C ha−1 year−1) compared with old grassland (1.6 Mg C ha−1 year−1) and determined by initial carbon stock. Regarding potential drought tolerance, we found larger soil moisture and soil organic matter (SOM) contents in old compared with young grassland topsoils. As hypothesized, the old grassland soils were more resistant to heavy rainfall as measured by water infiltration rate and macroporosity (at 20 cm depth) in comparison with the young grassland soils. In contrast to our hypothesis we did not find a difference in rooting between young and old permanent grassland, probably due to large variability in root biomass and root tip density. We conclude that old grasslands at dairy farms on clay soil can contribute more to the ecosystem services climate change mitigation and climate change adaptation than young grasslands. This study shows that under real farm conditions on a clay topsoil, carbon stock increases with grassland age and even after 30 years carbon saturation has not been reached. Further study is warranted to determine by how much extending grassland age can contribute to climate change mitigation and adaptation. Highlights: We studied the effect of young versus old grassland on a range of soil properties related to climate change mitigation and adaptation.Old, more than young, grassland soils offer potential to mitigate and adapt to climate change.This finding gives farmers insight into the merits of extending grassland age on clay soils.Soil carbon stock determines carbon sequestration rate more than grassland age. [ABSTRACT FROM AUTHOR]
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- 2022
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15. Fully automatic determination of soil bacterium numbers, cell volumes, and frequencies of dividing cells by confocal laser scanning microscopy and image analysis
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Bloem, Jaap, Veninga, Meint, and Shepherd, John
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Soil microbiology -- Analysis ,Cell research -- Observations ,Biological sciences - Abstract
An image analysis system facilitates the fully automatic determination of cell number, widths, lengths and volumes of bacteria in soil smears. Use of confocal laser scanning microscope helps surmount the problem of the thickness of the soil smear. The image analysis system helps evaluate the number of cell in agglomerates and the frequency of dividing cells.
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- 1995
16. Ribosomal RNA content in microcolony forming soil bacteria measured by quantitative 16S rRNA hybridization and image analysis
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Binnerup, Svend Jørgen, Bloem, Jaap, Hansen, Bjarne Munk, Wolters, Wim, Veninga, Meint, and Hansen, Michael
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- 2001
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17. Chapter 8 Microbial indicators
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Bloem, Jaap and Breure, Anton M.
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- 2003
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18. Food webs and ecosystem services during soil transformations
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van Leeuwen, Jeroen P., Hemerik, Lia, Bloem, Jaap, and de Ruiter, Peter C.
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- 2011
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19. Resilience in coastal dune grasslands: pH and soil organic matter effects on P nutrition, plant strategies, and soil communities.
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Kooijman, Annemieke, Morriën, Elly, Jagers op Akkerhuis, Gerard, Missong, Anna, Bol, Roland, Klumpp, Erwin, Hall, Rutger, Til, Mark, Kalbitz, Karsten, and Bloem, Jaap
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HUMUS ,CALCAREOUS soils ,GRASSLAND soils ,SOIL acidity ,SAND dunes ,SOIL composition - Abstract
Soil organic matter (SOM) and pH are key ecosystem drivers, influencing resilience to environmental change. We tested the separate effects of pH and SOM on nutrient availability, plant strategies, and soil community composition in calcareous and acidic Grey dunes (H2130) with low, intermediate, and/or high SOM, which differ in sensitivity to high atmospheric N deposition. Soil organic matter was mainly important for biomass parameters of plants, microbes, and soil animals, and for microarthropod diversity and network complexity. However, differences in pH led to fundamental differences in P availability and plant strategies, which overruled the normal soil community patterns, and influenced resilience to N deposition. In calcareous dunes with low grass‐encroachment, P availability was low despite high amounts of inorganic P, due to low solubility of calcium phosphates and strong P sorption to Fe oxides at high pH. Calcareous dunes were dominated by low‐competitive arbuscular mycorrhizal (AM) plants, which profit from mycorrhiza especially at low P. In acidic dunes with high grass‐encroachment, P availability increased as calcium phosphates dissolved and P sorption weakened with the shift from Fe oxides to Fe‐OM complexes. Weakly sorbed and colloidal P increased, and at least part of the sorbed P was organic. Acidic dunes were dominated by nonmycorrhizal (NM) plants, which increase P uptake through exudation of carboxylates and phosphatase enzymes, which release weakly sorbed P, and disintegrate labile organic P. The shifts in P availability and plant strategies also changed the soil community. Contrary to expectations, the bacterial pathway was more important in acidic than in calcareous dunes, possibly due to exudation of carboxylates and phosphatases by NM plants, which serve as bacterial food resource. Also, the fungal AM pathway was enhanced in calcareous dunes, and fungal feeders more abundant, due to the presence of AM fungi. The changes in soil communities in turn reduced expected differences in N cycling between calcareous and acidic dunes. Our results show that SOM and pH are important, but separate ecosystem drivers in Grey dunes. Differences in resilience to N deposition are mainly due to pH effects on P availability and plant strategies, which in turn overruled soil community patterns. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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20. Can the presence of plantain (Plantago lanceolata L.) improve nitrogen cycling of dairy grassland systems on peat soils?
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Pijlman, Jeroen, Berger, Stijn J., Lexmond, Fay, Bloem, Jaap, van Groenigen, Jan Willem, Visser, Eric J. W., Erisman, Jan Willem, and van Eekeren, Nick
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PEAT soils ,GRASSLAND soils ,NITROGEN cycle ,HUMUS ,GRASSLANDS ,PLANTAGO - Abstract
Reactive nitrogen (N) losses, and in particular nitrous oxide losses, from dairy grasslands on peat soils are generally high as a result of relative high soil organic matter contents, potential N mineralisation rates and shallow groundwater levels. Effects of the inclusion of the temperate forage species plantain (Plantago lanceolata L.) (PL), which produces secondary compounds with biological nitrification inhibition capacity, on the fate of soil mineral N were studied in a combined mesocosm and field experiment. The experiments comprised four treatments differing in intentional herbage share of plantain versus perennial ryegrass (Lolium perenne L.) (100%PL, 66%PL, 33%PL and 0%PL). Potential nitrification in the mesocosm experiment was significantly lower at 100%PL versus 0%PL (p = 0.018), but soil nitrate concentrations were not. Nitrous oxide fluxes reduced by 39% (p = 0.021) in the presence of plantain in the field experiment, without an obvious link to the quantity of plantain. N use efficiency of plantain tended to increase with the quantity of plantain in the sward in the mesocosm experiment (p = 0.098), but not in the field experiment. Our results suggest that the presence of plantain can affect the fate of soil mineral N of dairy grasslands on peat soils. [ABSTRACT FROM AUTHOR]
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- 2020
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21. Predicting soil N supply and yield parameters in peat grasslands.
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Deru, Joachim G.C., Bloem, Jaap, de Goede, Ron, Hoekstra, Nyncke, Keidel, Harm, Kloen, Henk, Nierop, Andreas, Rutgers, Michiel, Schouten, Ton, van den Akker, Jan, Brussaard, Lijbert, and van Eekeren, Nick
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NITROGEN in soils , *MINERALIZATION , *PEAT soils , *HUMUS , *FERTILIZERS - Abstract
Highlights • N uptake, N mineralization and soil properties were compared for 20 peat grasslands. • N uptake correlated with chemical-physical parameters, not with N mineralization. • Results indicate that N uptake was limited by water rather than by N availability. • Water repellency of peat soil following dry periods appears to limit grass growth. Abstract Considerable nitrogen (N) mineralization occurs in drained peat soils in use for dairy grassland, due to aerobic decomposition of soil organic matter (SOM). N losses may be limited by matching grass N uptake with N mineralization and by adapting on-farm fertilization schemes to soil N supply (SNS) and apparent N recovery (ANR). Previous attempts to predict SNS of peat grasslands from soil parameters have been unsuccessful, partly due to high variation in SNS between sites and years. In this paper, we present field data from twenty dairy grasslands on drained peat (29–65% SOM; Terric Histosols). Grass yield parameters (e.g. SNS and ANR) were compared with a comprehensive data set of soil biotic and abiotic properties measured at the start of the growing season, and with N mineralization calculated from this data. SNS ranged between 171 and 377 kg N ha−1 (mean: 264 kg N ha−1) during the growing season. Soil N mineralization estimated by laboratory incubation and by foodweb-based production ecological calculations gave similar mean values with slightly higher coefficients of variation, but correlations with SNS were not significant. Regression analysis with soil properties showed a positive correlation between SNS and soil Ca:Mg ratio and a negative correlation between fertilized grass yield and soil C:SOM ratio. No significant models were found for ANR. Based on our data and on literature, we conclude that these parameters indicate linkages between grass yield and soil physical-hydrological properties such as soil structure and water availability. In particular, the C:SOM ratio in these soils with high organic matter content may be an indicator of water repellency, and our results suggest that grass growth was limited by drought more than by nutrient availability. [ABSTRACT FROM AUTHOR]
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- 2019
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22. Soil ecology and ecosystem services of dairy and semi-natural grasslands on peat.
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Deru, Joachim G.C., Bloem, Jaap, de Goede, Ron, Keidel, Harm, Kloen, Henk, Rutgers, Michiel, van den Akker, Jan, Brussaard, Lijbert, and van Eekeren, Nick
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SOIL ecology , *PEAT , *GRASSLANDS , *SOIL composition , *CARBON dioxide , *SOIL microbiology - Abstract
Peat wetlands are of major importance for ecosystem services such as carbon storage, water regulation and maintenance of biodiversity. However, peat drainage for farming leads to CO 2 emission, soil subsidence and biodiversity losses. In the peat areas in the Netherlands, solutions are sought in reducing drainage, adapting farming to wetter soils, and converting productive dairy grasslands to less intensively managed semi-natural grasslands. Our objective was to compare the soil ecology and related ecosystem services of dairy and semi-natural grasslands on peat soils (Terric Histosols). Soil biotic and abiotic parameters were measured in twenty dairy and twenty semi-natural sites, with particular focus on (i) soil faunal diversity (ecosystem service “maintenance of biodiversity”), (ii) CO 2 emission (“climate regulation”), (iii) water infiltration (“water regulation”) and (iv) soil fertility (“grass production”). Mean soil faunal taxonomic richness per site (alpha diversity) was higher in dairy grasslands compared to semi-natural grasslands. However, the total observed number of taxa (gamma diversity) in dairy grassland was 13% lower for soil fauna and 21% lower when including plant species. Potential C mineralization rate in the topsoil – used as a proxy for CO 2 emission – was not influenced by land use but was limited by drought. Additionally, potential C mineralization depended on different C sources and microbial groups in the two grassland types. Water infiltration rate differed by a factor of five between land use types (dairy > semi-natural), and correlated with soil porosity. As expected, soil fertility was higher in dairy than in semi-natural grasslands. However, potential N mineralization was similar in dairy and semi-natural grasslands and was correlated negatively with bacterial biomass apparently indicating N immobilization, and positively with bacterial growth that depended on labile C and N in soil. Our study on peat soils shows that dairy versus semi-natural grassland use influences biodiversity, climate regulation, water regulation and (potential for) grassland production. We conclude with recommendations for land management to optimize the delivery of those ecosystem services. [ABSTRACT FROM AUTHOR]
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- 2018
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23. Aggregation and organic matter in subarctic Andosols under different grassland management.
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Lehtinen, Taru, Gísladóttir, Guðrún, Lair, Georg J., van Leeuwen, Jeroen P., Blum, Winfried E.H., Bloem, Jaap, Steffens, Markus, and Ragnarsdóttir, Kristín Vala
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GRASSLAND management ,HUMUS ,SOIL quality ,SOIL biology ,TOPSOIL ,NUCLEAR magnetic resonance spectroscopy - Abstract
Quantity and quality of soil organic matter (SOM) affect physical, chemical, and biological soil properties, and are pivotal to productive and healthy grasslands. Thus, we analyzed the distribution of soil aggregates and assessed quality, quantity, and distribution of SOM in two unimproved and improved (two organic and two conventional) grasslands in subarctic Iceland, in Haplic and Histic Andosols. We also evaluated principal physicochemical and biological soil properties, which influence soil aggregation and SOM dynamics. Macroaggregates (>250 µm) in topsoils were most prominent in unimproved (62–77%) and organically (58–69%) managed sites, whereas 20–250 µm aggregates were the most prominent in conventionally managed sites (51–53%). Macroaggregate stability in topsoils, measured as mean weight diameter, was approximately twice as high in organically managed (12–20 mm) compared with the conventionally managed (5–8 mm) sites, possibly due to higher organic inputs (e.g., manure, compost, and cattle urine). In unimproved grasslands and one organic site, macroaggregates contributed between 40% and 70% of soil organic carbon (SOC) and nitrogen to bulk soil, whereas in high SOM concentration sites free particulate organic matter contributed up to 70% of the SOC and nitrogen to bulk soil. Aggregate hierarchy in Haplic Andosols was confirmed by different stabilizing mechanisms of micro- and macroaggregates, however, somewhat diminished by oxides (pyrophosphate-, oxalate-, and dithionite-extractable Fe, Al, and Mn) acting as binding agents for macroaggregates. In Histic Andosols, no aggregate hierarchy was observed. The higher macroaggregate stability in organic farming practice compared with conventional farming is of interest due to the importance of macroaggregates in protecting SOM and soils from erosion, which is a prerequisite for soil functions in grasslands that are envisaged for food production in the future. [ABSTRACT FROM PUBLISHER]
- Published
- 2015
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24. Nitrogen Retention by Soil Biota; A Key Role in the Rehabilitation of Natural Grasslands?
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Kemmers, Rolf H., Bloem, Jaap, and Faber, Jack H.
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NITROGEN in soils , *SOIL microbiology , *GRASSLAND restoration , *ENVIRONMENTAL engineering , *PLANT species , *SPECIES diversity - Abstract
Environmental stress is the main cause of the decline of species diversity in low-productive fen meadows in the Netherlands. Attempts to restore species diverse fen meadows e.g. by sod cutting frequently fail. We supposed that unsuccessful efforts are due to ignoring the impact of environmental stress on the performance of soil biota, which play a key role in N-immobilization and keeping available-N for primary production low. We investigated both pristine and degraded natural sites and successfully and unsuccessfully restored sites of poor and rich fen meadows. We determined plant species composition, soil chemical properties, N-pools in soil biota, N-mineralization rates, and N-fluxes. In pristine rich and poor fen meadows, mineral-N was poorly available for primary production due to a strong N-immobilization by soil biota. Annual N-immobilization fluxes exceeded by far the annual N-harvest by primary production. N-immobilization in pristine fens was higher than in degraded fens. In successfully restored rich fens, net N-mineralization was lower and N-immobilization higher than in the unsuccessful category. From our results, we derived the hypothesis that in degraded or in unsuccessfully restored fens the soils internal N-balance shifted from N-immobilization to net N-mineralization, favoring biomass production but disadvantaging plant species diversity. N-retention driven by an active N-immobilizing soil biological community, is likely a decisive process for successful recovery of plant species diversity in low productive fen meadows. We recommend that restoration techniques should stimulate a functionally diverse soil fauna, as this may enhance the storage of available nutrients in the soil food web. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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25. Extensive Management Promotes Plant and Microbial Nitrogen Retention in Temperate Grassland.
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de Vries, Franciska T., Bloem, Jaap, Quirk, Helen, Stevens, Carly J., Bol, Roland, and Bardgett, Richard D.
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NITROGEN , *SOILS , *LEACHING , *SEDIMENTATION & deposition , *COMMUNITIES , *GRASSLANDS - Abstract
Leaching losses of nitrogen (N) from soil and atmospheric N deposition have led to widespread changes in plant community and microbial community composition, but our knowledge of the factors that determine ecosystem N retention is limited. A common feature of extensively managed, species-rich grasslands is that they have fungal-dominated microbial communities, which might reduce soil N losses and increase ecosystem N retention, which is pivotal for pollution mitigation and sustainable food production. However, the mechanisms that underpin improved N retention in extensively managed, species-rich grasslands are unclear. We combined a landscape-scale field study and glasshouse experiment to test how grassland management affects plant and soil N retention. Specifically, we hypothesised that extensively managed, species-rich grasslands of high conservation value would have lower N loss and greater N retention than intensively managed, species-poor grasslands, and that this would be due to a greater immobilisation of N by a more fungaldominated microbial community. In the field study, we found that extensively managed, species-rich grasslands had lower N leaching losses. Soil inorganic N availability decreased with increasing abundance of fungi relative to bacteria, although the best predictor of soil N leaching was the C/N ratio of aboveground plant biomass. In the associated glasshouse experiment we found that retention of added 15N was greater in extensively than in intensively managed grasslands, which was attributed to a combination of greater root uptake and microbial immobilisation of 15N in the former, and that microbial immobilisation increased with increasing biomass and abundance of fungi. These findings show that grassland management affects mechanisms of N retention in soil through changes in root and microbial uptake of N. Moreover, they support the notion that microbial communities might be the key to improved N retention through tightening linkages between plants and microbes and reducing N availability. [ABSTRACT FROM AUTHOR]
- Published
- 2012
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26. Association of Earthworm-Denitrifier Interactions with Increased Emission of Nitrous Oxide from Soil Mesocosms Amended with Crop Residue.
- Author
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Nebert, Lucas D., Bloem, Jaap, Lubbers, Ingrid M., and van Groenigen, Jan Willem
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EARTHWORMS , *NITROUS oxide , *DENITRIFICATION , *ORGANIC compounds , *SOILS , *RNA , *CARBON - Abstract
Earthworm activity is known to increase emissions of nitrous oxide (N2O) from arable soils. Earthworm gut, casts, and burrows have exhibited higher denitrification activities than the bulk soil, implicating priming of denitrifying organisms as a possible mechanism for this effect. Furthermore, the earthworm feeding strategy may drive N2O emissions, as it determines access to fresh organic matter for denitrification. Here, we determined whether interactions between earthworm feeding strategy and the soil denitrifier community can predict N2O emissions from the soil. We set up a 90-day mesocosm experiment in which 15N-labeled maize (Zea mays L.) was either mixed in or applied on top of the soil in the presence or absence of the epigeic earthworm Lumbricus rubellus and/or the endogeic earthworm Aporrectodea caliginosa. We measured N2O fluxes and tested the bulk soil for denitrification enzyme activity and the abundance of 16S rRNA and denitrifier genes nirS and nosZ through real-time quantitative PCR. Compared to the control, L. rubellus increased denitrification enzyme activity and N2O emissions on days 21 and 90 (day 21, P = 0.034 and P = 0.002, respectively; day 90, P = 0.001 and P = 0.007, respectively), as well as cumulative N2O emissions (76%; P = 0.014). A. caliginosa activity led to a transient increase of N2O emissions on days 8 to 18 of the experiment. Abundance of nosZ was significantly increased (100%) on day 90 in the treatment mixture containing L. rubellus alone. We conclude that L. rubellus increased cumulative N2O emissions by affecting denitrifier community activity via incorporation of fresh residue into the soil and supplying a steady, labile carbon source. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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27. Abundance, production and stabilization of microbial biomass under conventional and reduced tillage
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van Groenigen, Kees-Jan, Bloem, Jaap, Bååth, Erland, Boeckx, Pascal, Rousk, Johannes, Bodé, Samuel, Forristal, Dermot, and Jones, Michael B.
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SOIL microbiology , *BIOMASS , *SOIL stabilization , *TILLAGE , *MYCORRHIZAS , *MICROBIAL growth , *BIOTIC communities , *SOIL fungi - Abstract
Abstract: Soil tillage practices affect the soil microbial community in various ways, with possible consequences for nitrogen (N) losses, plant growth and soil organic carbon (C) sequestration. As microbes affect soil organic matter (SOM) dynamics largely through their activity, their impact may not be deduced from biomass measurements alone. Moreover, residual microbial tissue is thought to facilitate SOM stabilization, and to provide a long term integrated measure of effects on the microorganisms. In this study, we therefore compared the effect of reduced (RT) and conventional tillage (CT) on the biomass, growth rate and residues of the major microbial decomposer groups fungi and bacteria. Soil samples were collected at two depths (0–5 cm and 5–20 cm) from plots in an Irish winter wheat field that were exposed to either conventional or shallow non-inversion tillage for 7 growing seasons. Total soil fungal and bacterial biomasses were estimated using epifluorescence microscopy. To separate between biomass of saprophytic fungi and arbuscular mycorrhizae, samples were analyzed for ergosterol and phospholipid fatty acid (PLFA) biomarkers. Growth rates of saprophytic fungi were determined by [14C]acetate-in-ergosterol incorporation, whereas bacterial growth rates were determined by the incorporation of 3H-leucine in bacterial proteins. Finally, soil contents of fungal and bacterial residues were estimated by quantifying microbial derived amino sugars. Reduced tillage increased the total biomass of both bacteria and fungi in the 0–5 cm soil layer to a similar extent. Both ergosterol and PLFA analyses indicated that RT increased biomass of saprophytic fungi in the 0–5 cm soil layer. In contrast, RT increased the biomass of arbuscular mycorrhizae as well as its contribution to the total fungal biomass across the whole plough layer. Growth rates of both saprotrophic fungi and bacteria on the other hand were not affected by soil tillage, possibly indicating a decreased turnover rate of soil microbial biomass under RT. Moreover, RT did not affect the proportion of microbial residues that were derived from fungi. In summary, our results suggest that RT can promote soil C storage without increasing the role of saprophytic fungi in SOM dynamics relative to that of bacteria. [Copyright &y& Elsevier]
- Published
- 2010
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28. High turnover of fungal hyphae in incubation experiments.
- Author
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de Vries, Franciska T., Bååth, Erland, Kuyper, Thom W., and Bloem, Jaap
- Subjects
SOIL fungi ,SOIL biology ,PLANT roots ,MICROORGANISMS ,MYCORRHIZAL fungi ,VESICULAR-arbuscular mycorrhizas ,PATHOGENIC microorganisms ,BIOLOGY education ,FATTY acids - Abstract
Soil biological studies are often conducted on sieved soils without the presence of plants. However, soil fungi build delicate mycelial networks, often symbiotically associated with plant roots (mycorrhizal fungi). We hypothesized that as a result of sieving and incubating without plants, the total fungal biomass decreases. To test this, we conducted three incubation experiments. We expected total and arbuscular mycorrhizal (AM) fungal biomass to be higher in less fertilized soils than in fertilized soils, and thus to decrease more during incubation. Indeed, we found that fungal biomass decreased rapidly in the less fertilized soils. A shift towards thicker hyphae occurred, and the fraction of septate hyphae increased. However, analyses of phospholipid fatty acids (PLFAs) and neutral lipid fatty acids could not clarify which fungal groups were decreasing. We propose that in our soils, there was a fraction of fungal biomass that was sensitive to fertilization and disturbance (sieving, followed by incubation without plants) with a very high turnover (possibly composed of fine hyphae of AM and saprotrophic fungi), and a fraction that was much less vulnerable with a low turnover (composed of saprotrophic fungi and runner hyphae of AMF). Furthermore, PLFAs might not be as sensitive in detecting changes in fungal biomass as previously thought. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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29. MICROBIAL INDICATORS IN THREE AGRICULTURAL SOILS WITH DIFFERENT MANAGEMENT.
- Author
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Pompilil, Letizia, Mellina, Alba Silvia, Benedetti, Anna, and Bloem, Jaap
- Abstract
Microorganisms respond rapidly to changing environmental conditions. Therefore microbes are generally considered as sensitive indicators of soil health. The aim of this study was to assess the biological fertility status and sustainability of three differently managed agricultural soils by using microbial indicators. Management practices involved a soil with minimum treatment (biodynamic); a soil characterized by periodic application of manure and chemical fertilizer (manure); and a soil characterized by depurated and stabilized organic sludge amendment (sludge). Samples were taken four times during a year, at two depths: 0-15 and 15-30 cm. An extensive characterization of soil organic matter was carried out. Biochemical parameters included metabolic quotient, mineralization quotient and kinetic parameters of microbial decomposition of soil organic matter. Community level physiological profile analysis (CLPP) was used to investigate soil microbial energetic strategies adopted in differently managed soils. Total amounts of fungi and bacteria were determined by direct microscopy. Indicators related to labile and humic organic matter fractions suggest significantly lower soil fertility and lower sustainability in the sludge amended treatment. Differences between the biodynamic treatment and Manure treatment were less consistent. Eco-physiological quotients and kinetic parameters of C-mineralization indicated a steady state in the biodynamic treatment and stressed conditions in the sludge treatment. Microbial communities seem to adopt a typically K-strategy (persistent) in the bio-dynamic treatment and a typically r-strategy (opportunists) in the sludge treatment. Manure management shows an intermediate result: the superficial layer is characterized by r-strategists and the deeper layer by K-strategists. [ABSTRACT FROM AUTHOR]
- Published
- 2008
30. Fungal biomass in pastures increases with age and reduced N input
- Author
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de Vries, Franciska T., Bloem, Jaap, van Eekeren, Nick, Brusaard, Lijbert, and Hoffland, Ellis
- Subjects
- *
BIOMASS , *FOOD chains , *FORAGE plants , *ERGOSTEROL - Abstract
Abstract: Previous studies have shown that soil fungal biomass increases towards more natural, mature systems. Shifts to a fungal-based soil food web have previously been observed with abandonment of agricultural fields and extensification of agriculture. In a previous field experiment we found increased fungal biomass with reduced N fertilisation. Here, we explore relationships between fungi, bacteria, N input and grassland age on real dairy farms in the Netherlands. We hypothesised that also in pastures that are still in production there is a negative relationship between fungal biomass and fertilisation, and that fungal biomass increases with grassland age in pastures that are still in production. We expected the fungal/bacterial biomass ratio to show the same responses, as this ratio has often been used as an indicator for management changes. We sampled 48 pastures from eight organic dairy farms. Sites differed in age and fertilisation rate. We determined fungal and bacterial biomass, as well as ergosterol (a fungal biomarker). Fungal and bacterial biomass and ergosterol, showed a negative relationship with N application rate, and correlated positively with organic matter percentage. In old pastures, fungal biomass and ergosterol were higher than in younger pastures. Because bacterial biomass responded in the same way as fungal biomass, the F/B ratio remained constant, and can therefore—in our data set—not be used as an indicator for changing management. We conclude that the changes in fungal and bacterial biomass were driven by changes in organic matter quality and quantity. The negative relationship we found between N application rate and fungal biomass adds to earlier work and confirms the presence of this relationship in pastures with relatively small differences in management intensities. Earlier studies on shifts in fungal biomass focused on ex-agricultural fields or restoration projects. Here we show that fungal biomass is also higher in older agricultural pastures. [Copyright &y& Elsevier]
- Published
- 2007
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31. FUNCTIONAL STABILITY OF MICROBIAL COMMUNITIES FROM LONG-TERM STRESSED SOILS TO ADDITIONAL DISTURBANCE.
- Author
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Tobor-Kaplon, Maria A., Bloem, Jaap, and De Ruiter, Peter C.
- Subjects
- *
MICROBIAL growth , *BACTERIAL growth , *AGRICULTURE , *LAND use , *SOILS , *ARABLE land - Abstract
Functional stability, measured in terms of resistance and resilience of soil respiration rate and bacterial growth rate, was studied in soils from field plots that have been exposed to copper contamination and low pH for more than two decades. We tested whether functional stability follows patterns predicted by either the ''low stress-high stability'' or the ''high stress-high stability'' theory. Treatments consisting of soils with no or high copper load (0 or 750 kg/ha) and with low or neutral pH (4.0 or 6.1) were used. Stability was examined by applying an additional disturbance by heat (50°C for 18 h) or drying-rewetting cycles. After heating, the respiration rate indicated that the soils without copper were less stable (more affected) than the soils with 750 kg/ha. Bacterial growth rate was more stable (resistant) to heat in the pH 6.1 than in the pH 4.0 soils. Growth rate was stimulated rather than inhibited by heating and was highly resilient in all soils. The respiration rate was less affected by drying-rewetting cycles in the pH 4.0 soils than in the pH 6.1 soils. Bacterial growth rate after drying-rewetting disturbance showed no distinct pattern of stability. We found that the stability of a particular process could vary significantly, depending on the kind of disturbance; therefore, neither of the two theories could adequately predict the response of the microbial community to disturbance. [ABSTRACT FROM AUTHOR]
- Published
- 2006
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32. Earthworm species composition affects the soil bacterial community and net nitrogen mineralization
- Author
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Postma-Blaauw, Maria B., Bloem, Jaap, Faber, Jack H., van Groenigen, Jan Willem, de Goede, Ron G.M., and Brussaard, Lijbert
- Subjects
- *
NITROGEN , *BIODIVERSITY , *ORGANIC compounds , *NONMETALS - Abstract
Summary: Knowledge of the effects of species diversity within taxonomic groups on nutrient cycling is important for understanding the role of soil biota in sustainable agriculture. We hypothesized that earthworm species specifically affect nitrogen mineralization, characteristically for their ecological group classifications, and that earthworm species interactions would affect mineralization through competition and facilitation effects. A mesocosm experiment was conducted to investigate the effect of three earthworm species, representative of different ecological groups (epigeic: Lumbricus rubellus; endogeic: Aporrectodea caliginosa tuberculata; and anecic: Lumbricus terrestris), and their interactions on the bacterial community, and on nitrogen mineralization from 15N-labelled crop residue and from soil organic matter. Our results indicate that L. rubellus and L. terrestris enhanced mineralization of the applied crop residue whereas A. caliginosa had no effect. On the other hand, L. rubellus and A. caliginosa enhanced mineralization of the soil organic matter, whereas L. terrestris had no effect. The interactions between different earthworm species affected the bacterial community and the net mineralization of soil organic matter. The two-species interactions between L. rubellus and A. caliginosa, and L. rubellus and L. terrestris, resulted in reduced mineral N concentrations derived from soil organic matter, probably through increased immobilization in the bacterial biomass. In contrast, the interaction between A. caliginosa and L. terrestris resulted in increased bacterial growth rate and reduced total soil C. When all three species were combined, the interaction between A. caliginosa and L. terrestris was dominant. We conclude that the effects of earthworms on nitrogen mineralization depend on the ecological traits of the earthworm species present, and can be modified by species interactions. Knowledge of these effects can be made useful in the prevention of nutrient losses and increased soil fertility in agricultural systems, that typically have a low earthworm diversity. [Copyright &y& Elsevier]
- Published
- 2006
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33. Bacterial traits, organism mass, and numerical abundance in the detrital soil food web of Dutch agricultural grasslands.
- Author
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Mulder, Christian, Cohen, Joel E., Setälä, Heikki, Bloem, Jaap, and Breure, Anton M.
- Subjects
BACTERIA ,DNA ,DETRITUS ,FOOD chains ,BIODIVERSITY - Abstract
This paper compares responses to environmental stress of the ecophysiological traits of organisms in the detrital soil food webs of grasslands in the Netherlands, using the relationship between average body massMand numerical abundanceN. The microbial biomass and biodiversity of belowground fauna were measured in 110 grasslands on sand, 85 of them farmed under organic, conventional and intensive management. Bacterial cell volume and abundance and electrophoretic DNA bands as well as bacterial activity in the form of either metabolic quotient (qCO
2 ) or microbial quotient (Cmic /Corg ) predicted the response of microorganisms to stress. For soil fauna, the logarithm of body mass log(M) was approximately linearly related to the logarithm of numerical abundance log(N) with slope near−1, and the regression slope and the proportion of predatory species were lower in intensive agroecosystems (more reduced substrates with higher energy content). Linear regression of log(N) on log(M) had slope not far from−3/4. The approach to monitoring data illustrated in this paper could be useful in assessing land-use quality. [ABSTRACT FROM AUTHOR]- Published
- 2005
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34. Bacterial Diversity in Agricultural Soils during Litter Decomposition.
- Author
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Dilly, Oliver, Bloem, Jaap, Vos, An, and Munch, Jean Charles
- Subjects
- *
BACTERIA , *BIODIVERSITY , *SOILS , *AGRICULTURE , *BIODEGRADATION , *DNA - Abstract
Denaturing gradient gel electrophoresis (DGGE) of amplified fragments of genes coding for 16S rRNA was used to study the development of bacterial communities during decomposition of crop residues in agricultural soils. Ten strains were tested, and eight of these strains produced a single band. Furthermore, a mixture of strains yielded distinguishable bands. Thus, DGGE DNA band patterns were used to estimate bacterial diversity. A field experiment performed with litter in nylon bags was used to evaluate the bacterial diversity during the decomposition of readily degradable rye and more refractory wheat material in comparable luvisols and cambisols in northern, central, and southern Germany. The amount of bacterial DNA in the fresh litter was small. The DNA content increased rapidly after the litter was added to the soil, particularly in the rapidly decomposing rye material. Concurrently, diversity indices, such as the Shannon-Weaver index, evenness, and equitability, which were calculated from the number and relative abundance (intensity) of the bacterial DNA bands amplified from genes coding for 16S rRNA, increased during the course of decomposition. This general trend was not significant for evenness and equitability at any time. The indices were higher for the more degradation-resistant wheat straw than for the more easily decomposed rye grass. Thus, the DNA band patterns indicated that there was increasing bacterial diversity as decomposition proceeded and substrate quality decreased. The bacterial diversity differed for the sites in northern, central, and southern Germany, where the same litter material was buried in the soil. This shows that in addition to litter type climate, vegetation, and indigenous microbes in the surrounding soil affected the development of the bacterial communities in the litter. [ABSTRACT FROM AUTHOR]
- Published
- 2004
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35. Nutrient cycling through phytoplankton, bacteria and protozoa, in selectively filtered Lake Vechten water.
- Author
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Bloem, Jaap, Albert, Claudia, Bär-Gillissen, Marie-José B., Berman, Thomas, and Cappenberg, Thomas E.
- Published
- 1989
36. Relative abundance and activity of melanized hyphae in different soil ecosystems
- Author
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van der Wal, Annemieke, Bloem, Jaap, Mulder, Christian, and de Boer, Wietse
- Subjects
- *
SOIL microbial ecology , *HYPHAE of fungi , *BIOTIC communities , *SOIL fungi , *SANDY soils , *FOREST soils , *BIOMASS , *LAND use , *HEATHLANDS - Abstract
Abstract: Here we report on the frequency of melanized fungal hyphae in 323 soils, covering different land use types. The proportion of total hyphae that was melanized averaged 61%. Arable fields with loamy sand, heathlands and city parks on sandy soils had the highest percentage of melanized hyphae. In addition to the frequency determinations, a microcosm study was performed on the role of melanized hyphae in two different ecosystems: an ex-arable field and a forest. Melanized hyphae appeared to be part of the active hyphae in the forest soil but not in the ex-arable soil. In conclusion, our results indicate that (1) melanized hyphae represent a large proportion of the total fungal biomass in soils and that (2) their function might differ between ecosystems. [Copyright &y& Elsevier]
- Published
- 2009
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37. Productivity and Topsoil Quality of Young and Old Permanent Grassland: An On-Farm Comparison.
- Author
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Iepema, Goaitske, Deru, Joachim G. C., Bloem, Jaap, Hoekstra, Nyncke, de Goede, Ron, Brussaard, Lijbert, and van Eekeren, Nick
- Abstract
Renewing agricultural grasslands for improved yields and forage quality generally involves eliminating standing vegetation with herbicides, ploughing and reseeding. However, grassland renewal may negatively affect soil quality and related ecosystem services. On clay soil in the north of the Netherlands, we measured grass productivity and soil chemical parameters of 'young' (5–15 years since last grassland renewal) and 'old' (>20 years since last grassland renewal) permanent grasslands, located as pairs at 10 different dairy farms. We found no significant difference with old permanent grassland in herbage dry matter yield and fertilizer nitrogen (N) response, whereas herbage N yield was lower in young permanent grassland. Moreover, the young grassland soil contained less soil organic matter (SOM), soil organic carbon (C) and soil organic N compared to the old grassland soil. Grass productivity was positively correlated with SOM and related parameters such as soil organic C, soil organic N and potentially mineralizable N. We conclude that on clay soils with 70% desirable grasses (i.e., Lolium perenne and Phleum pratense) or more, the presumed yield benefit of grassland renewal is offset by a loss of soil quality (SOM and N-total). The current practice of renewing grassland after 10 years without considering the botanical composition, is counter-productive and not sustainable. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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38. Applying Soil Health Indicators to Encourage Sustainable Soil Use: The Transition from Scientific Study to Practical Application.
- Author
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Griffiths, Bryan S., Faber, Jack, and Bloem, Jaap
- Abstract
The sustainable management of land for agricultural production has at its core a healthy soil, because this reduces the quantity of external inputs, reduces losses of nutrients to the environment, maximises the number of days when the soil can be worked, and has a pore structure that maximises both the retention of water in dry weather and drainage of water in wet weather. Soil health encompasses the physical, chemical, and biological features, but the use of biological indicators is the least well advanced. Sustainability also implies the balanced provision of ecosystem services, which can be more difficult to measure than single indicators. We describe how the key components of the soil food web contribute to a healthy soil and give an overview of the increasing number of scientific studies that have examined the use of biological indicators. A case study is made of the ecosystem service of water infiltration, which is quite an undertaking to measure directly, but which can be inferred from earthworm abundance and biodiversity which is relatively easy to measure. This highlights the difficulty of putting any monitoring scheme into practice and we finish by providing the considerations in starting a new soil health monitoring service in the UK and in maintaining biological monitoring in The Netherlands. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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39. Organic nitrogen rearranges both structure and activity of the soil-borne microbial seedbank.
- Author
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Leite, Márcio F. A., Pan, Yao, Bloem, Jaap, Berge, Hein ten, and Kuramae, Eiko E.
- Abstract
Use of organic amendments is a valuable strategy for crop production. However, it remains unclear how organic amendments shape both soil microbial community structure and activity, and how these changes impact nutrient mineralization rates. We evaluated the effect of various organic amendments, which range in Carbon/Nitrogen (C/N) ratio and degradability, on the soil microbiome in a mesocosm study at 32, 69 and 132 days. Soil samples were collected to determine community structure (assessed by 16S and 18S rRNA gene sequences), microbial biomass (fungi and bacteria), microbial activity (leucine incorporation and active hyphal length), and carbon and nitrogen mineralization rates. We considered the microbial soil DNA as the microbial seedbank. High C/N ratio favored fungal presence, while low C/N favored dominance of bacterial populations. Our results suggest that organic amendments shape the soil microbial community structure through a feedback mechanism by which microbial activity responds to changing organic inputs and rearranges composition of the microbial seedbank. We hypothesize that the microbial seedbank composition responds to changing organic inputs according to the resistance and resilience of individual species, while changes in microbial activity may result in increases or decreases in availability of various soil nutrients that affect plant nutrient uptake. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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40. Soil Processes and Functions in Critical Zone Observatories: Hypotheses and Experimental Design.
- Author
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Banwart, Steven, Bernasconi, Stefano M., Bloem, Jaap, Blum, Winfried, Brandao, Miguel, Brantley, Susan, Chabaux, Francois, Duffy, Christopher, Kram, Pavel, Lair, Georg, Lundin, Lars, Nikolaidis, Nikolaos, Novak, Martin, Panagos, Panos, Ragnarsdottir, Kristin Vala, Reynolds, Brian, Rousseva, Svetla, de Ruiter, Peter, van Gaans, Pauline, and van Riemsdijk, Willem
- Abstract
European Union policy on soil threats and soil protection has prioritized new research to address global soil threats. This research draws on the methodology of Critical Zone Observatories (CZOs) to focus a critical mass of international, multidisciplinary expertise at specific field sites. These CZOs were selected as part of an experimental design to study soil processes and ecosystem function along a hypothesized soil life cycle--from incipient soil formation where new parent material is being deposited, to highly degraded soils that have experienced millennia of intensive land use. Further CZOs have been selected to broaden the range of soil environments and data sets to test soil process models that represent the stages of the soil life cycle. The scientific methodology for this research focuses on the central role of soil structure and soil aggregate formation and stability in soil processes. Research methods include detailed analysis and mathematical modeling of soil properties related to aggregate formation and their relation to key processes of reactive transport, nutrient transformation, and C and food web dynamics in soil ecosystems. Within this program of research, quantification of soil processes across an international network of CZOs is focused on understanding soil ecosystem services including their quantitative monetary valuation within the soil life cycle. Further experimental design at the global scale is enabled by this type of international CZO network. One example is a proposed experiment to study soil ecosystem services along planetary-scale environmental gradients. This would allow scientists to gain insight into the responses of soil processes to increasing human pressures on Earth's critical zone that arise through rapidly changing land use and climate. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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41. Agricultural intensification and de-intensification differentially affect taxonomic diversity of predatory mites, earthworms, enchytraeids, nematodes and bacteria
- Author
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Postma-Blaauw, Maria B., de Goede, Ron G.M., Bloem, Jaap, Faber, Jack H., and Brussaard, Lijbert
- Subjects
- *
ENCHYTRAEIDAE , *NEMATODES , *EARTHWORMS , *MITES , *AGRICULTURAL intensification , *HAPLOTAXIDA - Abstract
Abstract: Agricultural intensification is known to impact the soil biota community. In a previous study, the impact of agricultural intensification on total abundances and functional group structure of major soil biota groups were measured. In this study we address the effects of conversion of extensively managed grassland to arable land on taxonomic diversity at genus and species level of four major soil biota groups (predatory mites, earthworms, enchytraeids, nematodes and bacteria). Vice versa, the effect of agricultural de-intensification (re-establishment of grassland on former arable land) on soil biota taxonomic diversity was also studied. Conversion of an extensively managed grassland to arable land had detrimental effects on taxonomic richness and diversity across taxonomic groups in the short-term, with largest effects on soil biota with larger body size. Effects of arable management were detrimental shortly after conversion. Restoration of grassland resulted in establishment of a species-rich community of nematodes (with partly different species), and recovery of the earthworm community. Predatory mite species were less successful in re-establishing and negative effects on enchytraeid species persisted. When combining the results of with the present study, we conclude that agricultural intensification resulted in a reduction in abundance and taxonomic diversity of nematodes and bacteria, whereas functional group structure of these groups was little affected. In contrast, predatory mites and earthworms were affected both in functional group structure and in taxonomic diversity. We conclude that agricultural intensification affects total abundances and taxonomic diversity of soil biota in agricultural land, but not necessarily the functional group diversity. Reduced taxonomic diversity may result in reduced resilience to stress, whereas reduced total abundances of microbiota may affect ecosystem functions such as nutrient mineralization. [Copyright &y& Elsevier]
- Published
- 2012
- Full Text
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42. Soil biological quality after 36 years of ley-arable cropping, permanent grassland and permanent arable cropping
- Author
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van Eekeren, Nick, Bommelé, Lydia, Bloem, Jaap, Schouten, Ton, Rutgers, Michiel, de Goede, Ron, Reheul, Dirk, and Brussaard, Lijbert
- Subjects
- *
SOIL biology , *CROPPING systems , *NEMATODES , *MICROBIAL growth - Abstract
Abstract: Insight is needed into how management influences soil biota when sustainable grassland systems are developed. A crop rotation of grass and maize can be sustainable in terms of efficient nutrient use. However, there is lack of information on the effect of such a crop rotation on soil biological quality. Earthworms, nematodes, bacteria and fungi were sampled over three years in a 36 years old experiment. Permanent arable land was compared with permanent grassland and with a ley-arable crop rotation. In the rotation, a period of three years of grassland (temporary grassland) was followed by a period of three years of arable land (temporary arable land) and vice versa. In the first year of arable cropping in the rotation, the number of earthworms was already low and not different from continuous cropping. In the three-year grass ley, the abundance of earthworms returned to the level of permanent grassland in the second year. However, the restoration of earthworm biomass took a minimum of three years. Furthermore, the anecic species did not recover the dominance they had in the permanent grassland. The numbers of herbivorous and microbivorous nematodes in the ley-crop rotation reached similar levels to those in the permanent treatments within one to two years. Although the same holds for the nematode genera composition, the Maturity Index and the proportion of omnivorous nematodes in the temporary treatments remained significantly lower than in their permanent counterparts. Differences in recovery were also found among microbial parameters. In the temporary treatments, bacterial growth rate and the capacity to degrade a suite of substrates recovered in the second year. However, the Community-Level Physiological Profiles in the permanent grassland remained different from the other treatments. Our results suggest that many functions of soil biota that are well established in permanent grassland, are restored in a ley-arable crop rotation. However, due to a reduction in certain species, specific functions of these soil biota could be reduced or lost. The ley-arable crop rotations were intermediate to permanent grassland and continuous arable land in terms of functioning of soil biota (e.g., N-mineralization). In terms of the functional aspects of the soil biota, permanent grassland might be preferable wherever possible. For maize cultivation, a ley-arable crop rotation is preferable to continuous arable land. However, a ley-arable crop rotation is only preferable to continuous arable cropping if it is not practised at the expense of permanent grassland at farm level. [Copyright &y& Elsevier]
- Published
- 2008
- Full Text
- View/download PDF
43. Soil suppressiveness and functional diversity of the soil microflora in organic farming systems
- Author
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Postma, Joeke, Schilder, Mirjam T., Bloem, Jaap, and van Leeuwen-Haagsma, Wiepie K.
- Subjects
- *
RHIZOCTONIA , *AGONOMYCETACEAE , *MYCOLOGY - Abstract
Abstract: Arable fields of 10 organic farms from different locations in The Netherlands were sampled in three subsequent years. The soil samples were analysed for disease suppressiveness against Rhizoctonia solani AG2.2IIIB in sugar beet, Streptomyces scabies in radish and Verticillium longisporum in oilseed rape. In addition, a variety of microbial, chemical and physical soil characteristics were assessed. All data were correlated by multiple regression and multivariate analyses with the objective to find correlations between soil suppressiveness and biotic or abiotic soil characteristics. Significant differences in soil suppressiveness were found between the fields for all three diseases. Multiple regression indicated a significant correlation between suppressiveness against Rhizoctonia and the number of antagonistic Lysobacter spp., as well as with % active fungi and bacterial diversity. Grass-clover stimulated Rhizoctonia suppression as well as the presence of antagonistic Lysobacter spp. (mainly L. antibioticus and L. gummosus) in clay soils. Streptomyces suppression correlated with the number of antagonistic Streptomyces spp., % of active fungi and bacterial population size. The presence of antagonistic Streptomyces spp. correlated with a high fungal/bacterial biomass ratio. Verticillium suppression was only measured in 2004 and 2005, due to the inconsistent suppressiveness along the years. Nevertheless, a significant correlation with pH, potential nitrogen mineralization and bacterial biomass was found. Bacterial and fungal PCR-denaturing gel electrophoresis fingerprinting of bacterial and fungal communities, in general, did not significantly correlate with disease suppression. Highly significant explanatory factors of the composition of the dominating bacterial and fungal populations were % lutum, pH, C/N quotient, biomass and growth rate of bacteria. Additionally, the % of organic matter and years of organic farming were explaining significantly the composition of the bacterial population. Thus, significant correlations between several soil characteristics and suppressiveness of different soil-borne pathogens were found. For two of the three pathogens, suppression correlated with biotic soil characteristics combined with the presence of specific bacterial antagonists. Probably the soil suppressiveness measured in the organic fields is a combined effect of general and specific disease suppression. [Copyright &y& Elsevier]
- Published
- 2008
- Full Text
- View/download PDF
44. Long-term organic farming fosters below and aboveground biota: Implications for soil quality, biological control and productivity
- Author
-
Birkhofer, Klaus, Bezemer, T. Martijn, Bloem, Jaap, Bonkowski, Michael, Christensen, Søren, Dubois, David, Ekelund, Fleming, Fließbach, Andreas, Gunst, Lucie, Hedlund, Katarina, Mäder, Paul, Mikola, Juha, Robin, Christophe, Setälä, Heikki, Tatin-Froux, Fabienne, Van der Putten, Wim H., and Scheu, Stefan
- Subjects
- *
ORGANIC farming , *FARM manure , *PREDATORY animals , *SOIL biology - Abstract
Abstract: Organic farming may contribute substantially to future agricultural production worldwide by improving soil quality and pest control, thereby reducing environmental impacts of conventional farming. We investigated in a comprehensive way soil chemical, as well as below and aboveground biological parameters of two organic and two conventional wheat farming systems that primarily differed in fertilization and weed management strategies. Contrast analyses identified management related differences between “herbicide-free” bioorganic (BIOORG) and biodynamic (BIODYN) systems and conventional systems with (CONFYM) or without manure (CONMIN) and herbicide application within a long-term agricultural experiment (DOK trial, Switzerland). Soil carbon content was significantly higher in systems receiving farmyard manure and concomitantly microbial biomass (fungi and bacteria) was increased. Microbial activity parameters, such as microbial basal respiration and nitrogen mineralization, showed an opposite pattern, suggesting that soil carbon in the conventional system (CONFYM) was more easily accessible to microorganisms than in organic systems. Bacterivorous nematodes and earthworms were most abundant in systems that received farmyard manure, which is in line with the responses of their potential food sources (microbes and organic matter). Mineral fertilizer application detrimentally affected enchytraeids and Diptera larvae, whereas aphids benefited. Spider abundance was favoured by organic management, most likely a response to increased prey availability from the belowground subsystem or increased weed coverage. In contrast to most soil-based, bottom-up controlled interactions, the twofold higher abundance of this generalist predator group in organic systems likely contributed to the significantly lower abundance of aboveground herbivore pests (aphids) in these systems. Long-term organic farming and the application of farmyard manure promoted soil quality, microbial biomass and fostered natural enemies and ecosystem engineers, suggesting enhanced nutrient cycling and pest control. Mineral fertilizers and herbicide application, in contrast, affected the potential for top-down control of aboveground pests negatively and reduced the organic carbon levels. Our study indicates that the use of synthetic fertilizers and herbicide application changes interactions within and between below and aboveground components, ultimately promoting negative environmental impacts of agriculture by reducing internal biological cycles and pest control. On the contrary, organic farming fosters microbial and faunal decomposers and this propagates into the aboveground system via generalist predators thereby increasing conservation biological control. However, grain and straw yields were 23% higher in systems receiving mineral fertilizers and herbicides reflecting the trade-off between productivity and environmental responsibility. [Copyright &y& Elsevier]
- Published
- 2008
- Full Text
- View/download PDF
45. Chitin- and Keratin-Rich Soil Amendments Suppress Rhizoctonia solani Disease via Changes to the Soil Microbial Community.
- Author
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Andreo-Jimenez, Beatriz, Schilder, Mirjam T., Nijhuis, Els H., te Beest, Dennis E., Bloem, Jaap, Visser, Johnny H. M., van Os, Gera, Brolsma, Karst, de Boer, Wietse, and Postmaa, Joeke
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RHIZOCTONIA solani , *MICROBIAL communities , *SOIL amendments , *AGRICULTURAL pests , *PHYTOPATHOGENIC microorganisms , *SUGAR crops - Abstract
Enhancing soil suppressiveness against plant pathogens or pests is a promising alternative strategy to chemical pesticides. Organic amendments have been shown to reduce crop diseases and pests, with chitin products the most efficient against fungal pathogens. To study which characteristics of organic products are correlated with disease suppression, an experiment was designed in which 10 types of organic amendments with different physicochemical properties were tested against the soilborne pathogen Rhizoctonia solani in sugar beet seedlings. Organic amendments rich in keratin or chitin reduced Rhizoctonia solani disease symptoms in sugar beet plants. The bacterial and fungal microbial communities in amended soils were distinct from the microbial communities in nonamended soil, as well as those in soils that received other nonsuppressive treatments. The Rhizoctonia-suppressive amended soils were rich in saprophytic bacteria and fungi that are known for their keratinolytic and chitinolytic properties (i.e., Oxalobacteraceae and Mortierellaceae). The microbial community in keratin- and chitin-amended soils was associated with higher zinc, copper, and selenium, respectively. [ABSTRACT FROM AUTHOR]
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- 2021
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46. Plant biomass, soil microbial community structure and nitrogen cycling under different organic amendment regimes; a 15N tracer-based approach.
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Heijboer, Amber, ten Berge, Hein F.M., de Ruiter, Peter C., Jørgensen, Helene Bracht, Kowalchuk, George A., and Bloem, Jaap
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PLANT biomass , *SOIL microbiology , *NITROGEN cycle , *SUSTAINABLE agriculture , *BRUSSELS sprouts , *PHOSPHOLIPIDS , *MINERALIZATION - Abstract
Sustainable agriculture requires nutrient management options that lead to a profitable crop yield with relatively low nitrogen (N) losses to the environment. We studied whether the addition of contrasting organic amendments together with inorganic fertilizer can promote both requirements simultaneously. In particular we studied how the chemical composition of organic amendments affects the biomass, activity and composition of the soil microbial community and subsequently carbon (C) and N mineralization, microbial N immobilization and plant growth and nutrient uptake. In a pot experiment, Brussels sprouts ( Brassica oleracea, cvar. Cyrus ) were grown on arable soil, mixed with 15 N-labelled mineral fertilizer and different kinds of organic amendments (cattle manure solid fraction, maize silage, lucerne silage, wheat straw) differing in C:N ratio and lignin content. After 69 and 132 days, destructive sampling took place to assess the effects of the different treatments on soil microbial biomass (microscopic measurements), microbial community composition (phospholipid fatty acid profiles), soil microbial activity ( 14 C-leucine incorporation), C and N mineralization, plant biomass and 15 N retrieval in soil pools, microbial biomass and plant biomass. Addition of organic amendments increased soil microbial biomass, activity and fungal/bacterial ratio and created distinct microbial community compositions, whereby high C:N ratio organic amendments had stronger effects compared to low C:N ratio amendments. Structural equation modelling showed that higher values of soil microbial activity were associated with increased N mineralization rates, increased plant biomass and plant 15 N uptake, while microbial 15 N immobilization was associated with soil microbial community composition. The outcomes of this study highlight the importance of the chemical composition and the amount of the organic amendments for finding a balance between plant N uptake, microbial N immobilization and N retention in labile and stable soil pools through the effects on the composition and activity of the soil microbial community. The results provide insights that can be used in designing combined input (nutrient and organic) nutrient management strategies for a more sustainable agriculture. [ABSTRACT FROM AUTHOR]
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- 2016
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47. Reduced tillage increases soil biological properties but not suppressiveness against Rhizoctonia solani and Streptomyces scabies.
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Kurm, Viola, Schilder, Mirjam T., Haagsma, Wiepie K., Bloem, Jaap, Scholten, Olga E., and Postma, Joeke
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TILLAGE , *RHIZOCTONIA solani , *SCABIES , *STREPTOMYCES , *SOIL biology , *SOIL sampling - Abstract
Intensive agricultural crop production can lead to a decline in biological soil characteristics and functions, such as soil microbial biomass and activity, carbon and nutrient cycling and soil suppressiveness, important for the sustainable production of food and feed. There is a need to understand how those soil functions can be improved by agricultural practices. In a long-term field study, we assessed whether reduced tillage could enhance soil biological parameters and soil suppressiveness against the plant-pathogenic fungus Rhizoctonia solani AG2-2IIIB and bacterium Streptomyces scabies. Soil suppressiveness was assessed in bioassays with a susceptible crop while adding pathogen inoculum. Undisturbed soil cores (0–12 cm) were used in these bioassays to include the soil structural aspects, which were likely affected by the tillage treatments. Reduced i.e., non-inversion, tillage was compared with conventional ploughing treatment over 6 years. We found that reduced tillage led to an increase in bacterial and fungal biomass, labile carbon and nitrogen and an increase in the abundance of potential bacterial antagonists, compared to conventional tillage in the upper 12 cm. However, the increase of these microbial parameters did not lead to consistent changes in soil suppressiveness against both R. solani and S. scabies in response to the tillage treatment. Rather, disease suppressiveness varied significantly between field and year of sampling but was not correlated to any of the assessed soil parameters. Thus while reduced tillage can be beneficial for soil biology, other measures will have to be investigated for inducing R. solani and S. scabies disease suppressiveness. • Reduced tillage led to a rapid increase in microbial biomass in the 12-cm upper soil layer • Abundance of potentially beneficial bacteria Lysobacter and Streptomyces increased as well under reduced tillage • Reduced tillage did not affect suppressiveness against Rhizoctonia solani AG2-2IIIB or Streptomyces scabies in bioassays • These bioassays were performed in undisturbed soil columns with a model crop and artificial pathogen inoculation. [ABSTRACT FROM AUTHOR]
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- 2023
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48. Monitoring soil bacteria with community-level physiological profiles using Biolog™ ECO-plates in the Netherlands and Europe.
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Rutgers, Michiel, Wouterse, Marja, Drost, Sytske M., Breure, Anton M., Mulder, Christian, Stone, Dorothy, Creamer, Rachel E., Winding, Anne, and Bloem, Jaap
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SOIL microbiology , *FUNGUS-bacterium relationships , *BACTERIOPHAGES - Abstract
Soil samples were analyzed with community-level physiological profiles (CLPP) using Biolog™ ECO-plates in the Netherlands Soil Monitoring Network (NSMN; 704 samples) and in a European-wide transect (73 samples). The selection of sites was based on a representative sample of major soil texture types, land uses and climate zones. This method for determination of CLPP was specifically designed to be applied in large and long-term monitoring activities. It encompassed a solution for the inoculum-density dependence of colour formation patterns in ECO-plates, through stepwise dilution to extinction of the bacterial inoculum. The CLPP in Dutch and European soil samples appeared to be reproducible and sensitive to land use and/or soil texture. Although the method is selective, CLPP based parameters correlated well with other microbial parameters and soil characteristics. Consistent patterns in CLPP and soil habitat characteristics are emerging, as brought about by environmental disturbances, land management and soil texture. The applicability of CLPP analysis in monitoring systems is discussed. [ABSTRACT FROM AUTHOR]
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- 2016
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49. General Surveillance of the soil ecosystem: An approach to monitoring unexpected adverse effects of GMO's
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Smit, Eric, Bakker, Peter A.H.M., Bergmans, Hans, Bloem, Jaap, Griffiths, Bryan S., Rutgers, Michiel, Sanvido, Olivier, Singh, Brajesh K., van Veen, Hans, Wilhelm, Ralf, and Glandorf, Debora C.M.
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ENVIRONMENTAL monitoring , *TRANSGENIC plants , *SOIL ecology , *ECOSYSTEM services , *DECISION making , *SOIL quality , *CULTIVATED plants , *BIOINDICATORS , *ENVIRONMENTAL protection - Abstract
Abstract: The commercial cultivation of genetically modified (GM) crops in the European Union (EU) necessitates, according to EU legislation, the setting up of a General Surveillance (GS) system that should be able to detect unanticipated effects of GM crops on the environment. Although the applicant is responsible for setting up GS as well as for reporting the results, EU Member States may implement additional supporting surveillance programmes. Devising a GS system to detect unanticipated effects is not straightforward and requires clearly defined protection goals, suitable indicators that are linked to measurable parameters and an objective system for assessing the data. This paper describes a number of recommendations for the development of a General Surveillance system of the soil ecosystem specifically focussed on the situation in the Netherlands. The overarching protection goal of General Surveillance is ‘soil quality’, which is translated into more practical terms of ecosystem services that are relevant for soil quality, and that can be used to select measurable parameters and thus make a link with actual measurements. Ultimately, if and when effects on ecosystem services are detected, decision makers will have to decide whether these effects are acceptable or not. As a support for these decision-making processes, this paper discusses the modalities for the development of a stakeholder participation model. The model involves three groups of persons: the land users, the soil scientists and the decision makers. For reasons of cost effectiveness, a GS system of the soil ecosystem will have to make use of existing networks. The Dutch Soil Quality Network (DSQN) offers an existing infrastructure for soil sampling for GS. Finally, the GS system may be extended to contain data from the Dutch Ecological Monitoring Network, earth observation systems as well as other data resources such as farmers questionnaires or reports form organisations involved in nature conservation. Ideally these data are compiled by a Central Reporting Office (CRO) and maintained in a Geographic Information System (GIS) based database. [Copyright &y& Elsevier]
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- 2012
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50. Nitrogen losses from two grassland soils with different fungal biomass
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de Vries, Franciska T., van Groenigen, Jan Willem, Hoffland, Ellis, and Bloem, Jaap
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NITROGEN , *GRASSLANDS , *BIOMASS , *SOIL fungi , *SOIL management , *LEACHING , *FOOD chains , *DENITRIFICATION , *SOIL microbiology , *GLOBAL warming & the environment - Abstract
Abstract: Nitrogen losses from agricultural grasslands cause eutrophication of ground- and surface water and contribute to global warming and atmospheric pollution. It is widely assumed that soils with a higher fungal biomass have lower N losses, but this relationship has never been experimentally confirmed. With the increased interest in soil-based ecosystem services and sustainable management of soils, such a relationship would be relevant for agricultural management. Here we present a first attempt to test this relationship experimentally. We used intact soil columns from two plots from a field experiment that had consistent differences in fungal biomass (68 ± 8 vs. 111 ± 9 μg C g−1) as a result of different fertilizer history (80 vs. 40 kg N ha−1 y−1 as farm yard manure), while other soil properties were very similar. We performed two greenhouse experiments: in the main experiment the columns received either mineral fertilizer N or no N (control). We measured N leaching, N2O emission and denitrification from the columns during 4 weeks, after which we analyzed fungal and bacterial biomass and soil N pools. In the additional 15N experiment we traced added N in leachates, soil, plants and microbial biomass. We found that in the main experiment, N2O emission and denitrification were lower in the high fungal biomass soil, irrespective of the addition of fertilizer N. Higher 15N recovery in the high fungal biomass soil also indicated lower N losses through dentrification. In the main experiment, N leaching after fertilizer addition showed a 3-fold increase compared to the control in low fungal biomass soil (11.9 ± 1.0 and 3.9 ± 1.0 kg N ha−1, respectively), but did not increase in high fungal biomass soil (6.4 ± 0.9 after N addition vs. 4.5 ± 0.8 kg N ha−1 in the control). Thus, in the high fungal biomass soil more N was immobilized. However, the 15N experiment did not confirm these results; N leaching was higher in high fungal biomass soil, even though this soil showed higher immobilization of 15N into microbial biomass. However, only 3% of total 15N was found in the microbial biomass 2 weeks after the mineral fertilization. Most of the recovered 15N was found in plants (approximately 25%) and soil organic matter (approximately 15%), and these amounts did not differ between the high and the low fungal biomass soil. Our main experiment confirmed the assumption of lower N losses in a soil with higher fungal biomass. The additional 15N experiment showed that higher fungal biomass is probably not the direct cause of higher N retention, but rather the result of low nitrogen availability. Both experiments confirmed that higher fungal biomass can be considered as an indicator of higher nitrogen retention in soils. [Copyright &y& Elsevier]
- Published
- 2011
- Full Text
- View/download PDF
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