36 results on '"Ayyar, B."'
Search Results
2. CLIC and membrane wound repair pathways enable pandemic norovirus entry and infection
- Author
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Ayyar, B. Vijayalakshmi, Ettayebi, Khalil, Salmen, Wilhelm, Karandikar, Umesh C., Neill, Frederick H., Tenge, Victoria R., Crawford, Sue E., Bieberich, Erhard, Prasad, B. V. Venkataram, Atmar, Robert L., and Estes, Mary K.
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- 2023
- Full Text
- View/download PDF
3. Insights into human norovirus cultivation in human intestinal enteroids.
- Author
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Ettayebi, Khalil, Kaur, Gurpreet, Patil, Ketki, Dave, Janam, Ayyar, B. Vijayalakshmi, Tenge, Victoria R., Neill, Frederick H., Xi-Lei Zeng, Speer, Allison L., Di Rienzi, Sara C., Britton, Robert A., Blutt, Sarah E., Crawford, Sue E., Ramani, Sasirekha, Atmar, Robert L., and Estes, Mary K.
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- 2024
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4. Human norovirus exhibits strain-specific sensitivity to host interferon pathways in human intestinal enteroids
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Lin, Shih-Ching, Qu, Lin, Ettayebi, Khalil, Crawford, Sue E., Blutt, Sarah E., Robertson, Matthew J., Zeng, Xi-Lei, Tenge, Victoria R., Ayyar, B. Vijayalakshmi, Karandikar, Umesh C., Yu, Xiaomin, Coarfa, Cristian, Atmar, Robert L., Ramani, Sasirekha, and Estes, Mary K.
- Published
- 2020
5. Bile acids and ceramide overcome the entry restriction for GII.3 human norovirus replication in human intestinal enteroids
- Author
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Murakami, Kosuke, Tenge, Victoria R., Karandikar, Umesh C., Lin, Shih-Ching, Ramani, Sasirekha, Ettayebi, Khalil, Crawford, Sue E., Zeng, Xi-Lei, Neill, Frederick H., Ayyar, B. Vijayalakshmi, Katayama, Kazuhiko, Graham, David Y., Bieberich, Erhard, Atmar, Robert L., and Estes, Mary K.
- Published
- 2020
6. Bile acid-sensitive human norovirus strains are susceptible to sphingosine-1-phosphate receptor 2 inhibition.
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Tenge, Victoria, Ayyar, B. Vijayalakshmi, Ettayebi, Khalil, Crawford, Sue E., Hayes, Nicole M., Yi-Ting Shen, Neill, Frederick H., Atmar, Robert L., and Estes, Mary K.
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SPHINGOSINE-1-phosphate , *VIRAL gastroenteritis , *FARNESOID X receptor , *NOROVIRUSES , *SMALL intestine , *BILE acids - Abstract
Human noroviruses (HuNoVs) are a diverse group of RNA viruses that cause endemic and pandemic acute viral gastroenteritis. Previously, we reported that many HuNoV strains require bile or bile acid (BA) to infect human jejunal intestinal enteroid cultures. BA was not essential for the replication of a pandemic-causing GII.4 HuNoV strain. We found the hydrophobic BA glycochenodeoxycholic acid (GCDCA) promotes the replication of the BA-dependent strain GII.3 in jejunal enteroids. Furthermore, we found that inhibition of the G-protein-coupled BA receptor, sphingosine-1-phosphate receptor 2 (S1PR2), by JTE-013, reduced GII.3 infection dose-dependently and inhibited GII.3 cellular uptake in enteroids. Herein, we sought to determine whether S1PR2 is required for other BA-dependent HuNoV strains, the BA-independent GII.4, and whether S1PR2 is required for BA-dependent HuNoV infection in HIEs from other small intestinal segments. We found a second S1PR2 inhibitor, GLPG2938, reduces GII.3 infection dose-dependently, and an S1PR2 agonist (CYM-5520) enhances GII.3 replication in the absence of GCDCA. GII.3 replication also is abrogated in the presence of JTE-013 and CYM-5520. JTE-013 inhibition of S1PR2 in jejunal HIEs reduces GI.1, GII.3, and GII.17 (BA-dependent) but not GII.4 Sydney (BA-independent) infection, providing additional evidence of strain-specific differences in HuNoV infection. Finally, GII.3 infection of duodenal, jejunal, and ileal lines derived from the same individual is reduced with S1PR2 inhibition, indicating a common mechanism of BA-dependent infection among multiple segments of the small intestine. Our results support a model where BA-dependent HuNoVs exploit BA effects on S1PR2 to infect the entire small intestine. IMPORTANCE Human noroviruses (HuNoVs) are important viral human pathogens that cause both outbreaks and sporadic gastroenteritis. These viruses are diverse, and many strains are capable of infecting humans. Our previous studies have identified strain-specific requirements for hydrophobic bile acids (BAs) to infect intestinal epithelial cells. Moreover, we identified a BA receptor, sphingosine-1-phosphate receptor 2 (S1PR2), required for infection by a BA-dependent strain. To better understand how various HuNoV strains enter and infect the small intestine and the role of S1PR2 in HuNoV infection, we evaluated infection by additional HuNoV strains using an expanded repertoire of intestinal enteroid cell lines. We found that multiple BA-dependent strains, but not a BA-independent strain, all require S1PR2 for infection. In addition, BA-dependent infection requires S1PR2 in multiple segments of the small intestine. Together, these results indicate that S1PR2 has value as a potential therapeutic target for BA-dependent HuNoV infection. [ABSTRACT FROM AUTHOR]
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- 2024
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- View/download PDF
7. Optimizing antibody expression: The nuts and bolts
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Ayyar, B. Vijayalakshmi, Arora, Sushrut, and Ravi, Shiva Shankar
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- 2017
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8. Affinity chromatography: A versatile technique for antibody purification
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Arora, Sushrut, Saxena, Vikas, and Ayyar, B. Vijayalakshmi
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- 2017
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9. Decoding Selection Bias Imparted by Unpaired Cysteines: a Tug of War Between Expression and Affinity
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Ayyar, B. Vijayalakshmi, Hearty, Stephen, and O’Kennedy, Richard
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- 2018
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10. Effects of membrane properties on the binding activities of the HN and HC heavy-chain domains of botulinum neurotoxin A
- Author
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Ayyar, B. Vijayalakshmi and Atassi, M. Zouhair
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- 2016
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11. Coming-of-Age of Antibodies in Cancer Therapeutics
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Ayyar, B. Vijayalakshmi, Arora, Sushrut, and O’Kennedy, Richard
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- 2016
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12. Development of humanized scFv antibody fragment(s) that targets and blocks specific HLA alleles linked to myasthenia gravis
- Author
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Ayyar, B. Vijayalakshmi and Atassi, M. Zouhair
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- 2017
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13. Facile domain rearrangement abrogates expression recalcitrance in a rabbit scFv
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Ayyar, B. Vijayalakshmi, Hearty, Stephen, and O’Kennedy, Richard
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- 2015
- Full Text
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14. Affinity chromatography as a tool for antibody purification
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Ayyar, B. Vijayalakshmi, Arora, Sushrut, Murphy, Caroline, and O’Kennedy, Richard
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- 2012
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- View/download PDF
15. Highly sensitive recombinant antibodies capable of reliably differentiating heart-type fatty acid binding protein from noncardiac isoforms
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Vijayalakshmi Ayyar, B., Hearty, Stephen, and O’Kennedy, Richard
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- 2010
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16. RNA-dependent RNA polymerase of predominant human norovirus forms liquid-liquid phase condensates as viral replication factories.
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Kaundal, Soni, Anish, Ramakrishnan, Ayyar, B. Vijayalakshmi, Shanker, Sreejesh, Kaur, Gundeep, Crawford, Sue E., Pollet, Jeroen, Stossi, Fabio, Estes, Mary K., and Prasad, B. V. Venkataram
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RNA replicase , *VIRAL replication , *RNA viruses , *VIRAL proteins , *GENETIC translation - Abstract
Many viral proteins form biomolecular condensates via liquid-liquid phase separation (LLPS) to support viral replication and evade host antiviral responses, and thus, they are potential targets for designing antivirals. In the case of nonenveloped positive-sense RNA viruses, forming such condensates for viral replication is unclear and less understood. Human noroviruses (HuNoVs) are positive-sense RNA viruses that cause epidemic and sporadic gastroenteritis worldwide. Here, we show that the RNA-dependent RNA polymerase (RdRp) of pandemic GII.4 HuNoV forms distinct condensates that exhibit all the signature properties of LLPS with sustained polymerase activity and the capability of recruiting components essential for viral replication. We show that such condensates are formed in HuNoV-infected human intestinal enteroid cultures and are the sites for genome replication. Our studies demonstrate the formation of phase-separated condensates as replication factories in a positive-sense RNA virus, which plausibly is an effective mechanism to dynamically isolate RdRp replicating the genomic RNA from interfering with the ribosomal translation of the same RNA. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
17. Human norovirus exhibits strain-specific sensitivity to host interferon pathways in human intestinal enteroids.
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Shih-Ching Lin, Lin Qu, Ettayebi, Khalil, Crawford, Sue E., Blutt, Sarah E., Robertson, Matthew J., Xi-Lei Zeng, Tenge, Victoria R., Vijayalakshmi Ayyar, B., Karandikar, Umesh C., Xiaomin Yu, Coarfa, Cristian, Atmar, Robert L., Ramani, Sasirekha, and Estes, Mary K.
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INTERFERONS ,VIRAL gastroenteritis ,ANTIVIRAL agents ,VIRAL replication ,INTERFERON inducers - Abstract
Human noroviruses (HuNoVs) are the leading cause of viral gastroenteritis worldwide; yet currently, no vaccines or FDAapproved antiviral drugs are available to counter these pathogens. To understand HuNoV biology and the epithelial response to infection, we performed transcriptomic analyses, RT-qPCR, CRISPR-Cas9 modification of human intestinal enteroid (HIE) cultures, and functional studies with two virus strains (a pandemic GII.4 and a bile acid-dependent GII.3 strain). We identified a predominant type III interferon (IFN)-mediated innate response to HuNoV infection. Replication of both strains is sensitive to exogenous addition of IFNs, suggesting the potential of IFNs as therapeutics. To obtain insight into IFN pathway genes that play a role in the antiviral response to HuNoVs, we developed knockout (KO) HIE lines for IFN alpha and lambda receptors and the signaling molecules, MAVS, STAT1, and STAT2. An unexpected differential response of enhanced replication and virus spread was observed for GII.3, but not the globally dominant GII.4 HuNoV in STAT1-knockout HIEs compared to parental HIEs. These results indicate cellular IFN responses restrict GII.3 but not GII.4 replication. The strain-specific sensitivities of innate responses against HuNoV replication provide one explanation for why GII.4 infections are more widespread and highlight strain specificity as an important factor in HuNoV biology. Genetically modified HIEs for innate immune genes are useful tools for studying immune responses to viral or microbial pathogens. [ABSTRACT FROM AUTHOR]
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- 2020
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18. Comparison of Microneutralization and Histo-Blood Group Antigen–Blocking Assays for Functional Norovirus Antibody Detection.
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Atmar, Robert L, Ettayebi, Khalil, Ayyar, B Vijayalakshmi, Neill, Frederick H, Braun, Ralph P, Ramani, Sasirekha, and Estes, Mary K
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CLINICAL trial registries ,IMMUNOGLOBULINS - Abstract
Background The development of an in vitro cultivation system for human noroviruses allows the measurement of neutralizing antibody levels. Methods Serum neutralizing antibody levels were determined using a GII.4/Sydney/2012-like virus in human intestinal enteroids in samples collected before and 4 weeks after administration of an investigational norovirus vaccine and were compared with those measured in histo-blood group antigen (HBGA)–blocking assays. Results Neutralizing antibody seroresponses were observed in 71% of 24 vaccinated adults, and antibody levels were highly correlated (r = 0.82, P <.001) with those measured by HBGA blocking. Conclusions HBGA-blocking antibodies are a surrogate for neutralization in human noroviruses. Clinical Trials Registration NCT02475278. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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19. 588 GII.3 HUMAN NOROVIRUS REQUIRES BILE ACID AND CERAMIDE FOR ENTRY AND INFECTION OF HUMAN INTESTINAL ENTEROIDS
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Tenge, Victoria R., Murakami, Kosuke, Karandikar, Umesh C., Lin, Shih-Ching, Ramani, Sasirekha, Ettayebi, Khalil, Crawford, Sue E., Zeng, Xi-Lei, Neill, Frederick H., Ayyar, B. Vijayalakshmi, Katayama, Kazuhiko, Graham, David Y., Bieberich, Erhard, Atmar, Robert L., and Estes, Mary
- Published
- 2020
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20. Bile acids and ceramide overcome the entry restriction for GII.3 human norovirus replication in human intestinal enteroids.
- Author
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Kosuke Murakami, Tenge, Victoria R., Karandikar, Umesh C., Shih-Ching Lin, Ramani, Sasirekha, Ettayebi, Khalil, Crawford, Sue E., Xi-Lei Zeng, Neill, Frederick H., Ayyar, B. Vijayalakshmi, Kazuhiko Katayama, Graham, David Y., Bieberich, Erhard, Atmar, Robert L., and Estes, Mary K.
- Subjects
BILE acids ,G protein coupled receptors ,FARNESOID X receptor ,SPHINGOMYELINASE - Abstract
Human noroviruses (HuNoVs) cause sporadic and epidemic outbreaks of gastroenteritis in all age groups worldwide. We previously reported that stem cell-derived human intestinal enteroid (HIE) cultures support replication of multiple HuNoV strains and that some strains (e.g., GII.3) replicate only in the presence of bile. Heat- and trypsin-treatment of bile did not reduce GII.3 replication, indicating a nonproteinaceous component in bile functions as an active factor. Here we show that bile acids (BAs) are critical for GII.3 replication and replication correlates with BA hydrophobicity. Using the highly effective BA, glycochenodeoxycholic acid (GCDCA), we show BAs act during the early stage of infection, BA-dependent replication in HIEs is not mediated by detergent effects or classic farnesoid X receptor or Takeda G protein-coupled receptor 5 signaling but involves another G protein-coupled receptor, sphingosine-1-phosphate receptor 2, and BA treatment of HIEs increases particle uptake. We also demonstrate that GCDCA induces multiple cellular responses that promote GII.3 replication in HIEs, including enhancement of 1) endosomal uptake, 2) endosomal acidification and subsequent activity of endosomal/lysosomal enzyme acid sphingomyelinase (ASM), and 3) ceramide levels on the apical membrane. Inhibitors of endosomal acidification or ASM reduce GII.3 infection and exogenous addition of ceramide alone permits infection. Furthermore, inhibition of lysosomal exocytosis of ASM, which is required for ceramide production at the apical surface, decreases GII.3 infection. Together, our results support a model where GII.3 exploits rapid BA-mediated cellular endolysosomal dynamic changes and cellular ceramide to enter and replicate in jejunal HIEs. [ABSTRACT FROM AUTHOR]
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- 2020
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21. WITHDRAWN: Genomic evidence of porcine parvovirus (ppv) in native Indian swine
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Ayyar, B. Vijayalakshmi and Arora, Sushrut
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- 2007
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22. Comparison of Microneutralization and Histo-Blood Group Antigen-Blocking Assays for Functional Norovirus Antibody Detection.
- Author
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Atmar, Robert L, Ettayebi, Khalil, Ayyar, B Vijayalakshmi, Neill, Frederick H, Braun, Ralph P, Ramani, Sasirekha, and Estes, Mary K
- Abstract
Background: The development of an in vitro cultivation system for human noroviruses allows the measurement of neutralizing antibody levels.Methods: Serum neutralizing antibody levels were determined using a GII.4/Sydney/2012-like virus in human intestinal enteroids in samples collected before and 4 weeks after administration of an investigational norovirus vaccine and were compared with those measured in histo-blood group antigen (HBGA)-blocking assays.Results: Neutralizing antibody seroresponses were observed in 71% of 24 vaccinated adults, and antibody levels were highly correlated (r = 0.82, P < .001) with those measured by HBGA blocking.Conclusions: HBGA-blocking antibodies are a surrogate for neutralization in human noroviruses.Clinical Trials Registration: NCT02475278. [ABSTRACT FROM AUTHOR]- Published
- 2019
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- View/download PDF
23. Human Norovirus Cultivation in Nontransformed Stem Cell-Derived Human Intestinal Enteroid Cultures: Success and Challenges.
- Author
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Estes, Mary K., Ettayebi, Khalil, Tenge, Victoria R., Murakami, Kosuke, Karandikar, Umesh, Lin, Shih-Ching, Ayyar, B. Vijayalakshmi, Cortes-Penfield, Nicolas W., Haga, Kei, Neill, Frederick H., Opekun, Antone R., Broughman, James R., Zeng, Xi-Lei, Blutt, Sarah E., Crawford, Sue E., Ramani, Sasirekha, Graham, David Y., and Atmar, Robert L.
- Subjects
NOROVIRUS diseases ,NOROVIRUSES ,EPITHELIAL cell culture ,VIRAL gastroenteritis ,DEVELOPMENTAL biology - Abstract
Noroviruses, in the genus Norovirus, are a significant cause of viral gastroenteritis in humans and animals. For almost 50 years, the lack of a cultivation system for human noroviruses (HuNoVs) was a major barrier to understanding virus biology and the development of effective antiviral strategies. This review presents a historical perspective of the development of a cultivation system for HuNoVs in human intestinal epithelial cell cultures. Successful cultivation was based on the discovery of genetically-encoded host factors required for infection, knowledge of the site of infection in humans, and advances in the cultivation of human intestinal epithelial cells achieved by developmental and stem cell biologists. The human stem cell-derived enteroid cultivation system recapitulates the multicellular, physiologically active human intestinal epithelium, and allows studies of virus-specific replication requirements, evaluation of human host-pathogen interactions, and supports the pre-clinical assessment of methods to prevent and treat HuNoV infections. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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24. Antigenic sites on the HN domain of botulinum neurotoxin A stimulate protective antibody responses against active toxin.
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Vijayalakshmi Ayyar, B., Tajhya, Rajeev B., Beeton, Christine, and Zouhair Atassi, M.
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BOTULINUM A toxins , *ANTIBODY formation , *CELL surface antigens , *EXOCYTOSIS , *IMMUNOGLOBULIN heavy chains - Abstract
Botulinum neurotoxins (BoNTs) are the most toxic substances known. BoNT intoxicates cells in a highly programmed fashion initiated by binding to the cell surface, internalization and enzymatic cleavage of substrate, thus, inhibiting synaptic exocytosis. Over the past two decades, immunological significance of BoNT/A C-terminal heavy chain (HC) and light chain (LC) domains were investigated extensively leading to important findings. In the current work, we explored the significance of BoNT/A heavy chain N-terminal (HN) region as a vaccine candidate. Mice were immunized with recombinant HN519-845 generating antibodies (Abs) that were found to be protective against lethal dose of BoNT/A. Immuno-dominant regions of HN519-845 were identified and individually investigated for antibody response along with synthetic peptides within those regions, using in vivo protection assays against BoNT/A. Results were confirmed by patch-clamp analysis where anti-HN antibodies were studied for the ability to block toxin-induced channel formation. This data strongly indicated that HN519-593 is an important region in generating protective antibodies and should be valuable in a vaccine design. These results are the first to describe and dissect the protective activity of the BoNT/A HN domain. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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25. 2'-Fucosyllactose inhibits human norovirus replication in human intestinal enteroids.
- Author
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Patil K, Ayyar BV, Hayes NM, Neill FH, Bode L, Estes MK, Atmar RL, and Ramani S
- Abstract
Human noroviruses (HuNoVs) are the leading cause of acute gastroenteritis worldwide. Currently, there are no targeted antivirals for the treatment of HuNoV infection. Histo-blood group antigens (HBGAs) on the intestinal epithelium are cellular attachment factors for HuNoVs; molecules that block the binding of HuNoVs to HBGAs thus have the potential to be developed as antivirals. Human milk oligosaccharides (HMOs) are glycans in human milk with structures analogous to HBGAs. HMOs have been shown to act as decoy receptors to prevent the attachment of multiple enteric pathogens to host cells. Previous X-ray crystallography studies have demonstrated the binding of HMO 2'-fucosyllactose (2'FL) in the same pocket as HBGAs for some HuNoV strains. We evaluated the effect of 2'FL on the replication of a globally dominant GII.4 Sydney [P16] HuNoV strain using human intestinal enteroids (HIEs) from adults and children. A significant reduction in GII.4 Sydney [P16] replication was seen in duodenal and jejunal HIEs from multiple adult donors, all segments of the small intestine from an adult organ donor, and in two pediatric duodenal HIEs. However, 2'FL did not inhibit HuNoV replication in two infant jejunal HIEs that had significantly lower expression of α1-2-fucosylated glycans. 2'FL can be synthesized in large scale, and safety and tolerance have been assessed previously. Our data suggest that 2'FL has the potential to be developed as a therapeutic for HuNoV gastroenteritis., Importance: Human noroviruses infect the gastrointestinal tract and are a leading cause of acute gastroenteritis worldwide. Common symptoms of norovirus include diarrhea, vomiting, and stomach cramps. Virus shedding and symptoms are prolonged and debilitating in immunocompromised patients. Currently, there are no approved vaccines or targeted antivirals for treating human norovirus infection. Human intestinal enteroids derived from intestinal stem cells allow the successful replication of norovirus in the laboratory and can be used as a physiologically relevant model system to evaluate antivirals. We discovered that 2'-fucosyllactose (2'FL), an oligosaccharide naturally occurring in human milk, inhibits GII.4 norovirus replication in HIEs from multiple donors and thus has the potential to be developed as a therapeutic for human norovirus. These findings have high translational potential since 2'FL from several manufacturers has a "generally recognized as safe" status and can be synthesized on a large scale for immediate application.
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- 2025
- Full Text
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26. Insights into Human Norovirus Cultivation in Human Intestinal Enteroids.
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Ettayebi K, Kaur G, Patil K, Dave J, Ayyar BV, Tenge VR, Neill FH, Zeng XL, Speer AL, Di Rienzi SC, Britton RA, Blutt SE, Crawford SE, Ramani S, Atmar RL, and Estes MK
- Abstract
Human noroviruses (HuNoVs) are a significant cause of epidemic and sporadic acute gastroenteritis worldwide. The lack of a reproducible culture system hindered the study of HuNoV replication and pathogenesis for almost a half-century. This barrier was overcome with our successful cultivation of multiple HuNoV strains in human intestinal enteroids (HIEs), which has significantly advanced HuNoV research. We optimized culture media conditions and generated genetically-modified HIE cultures to enhance HuNoV replication in HIEs. Building upon these achievements, we now present new insights to this culture system, which involve testing different media, unique HIE lines, and additional virus strains. HuNoV infectivity was evaluated and compared in new HIE models, including HIEs generated from different intestinal segments of individual adult organ donors, HIEs from human intestinal organoids produced from directed differentiation of human embryonic stem cells into intestinal organoids that were transplanted and matured in mice before making enteroids (H9tHIEs), genetically-engineered (J4 FUT2 knock-in [ KI ], J2 STAT1 knock-out [ KO ]) HIEs, as well as HIEs derived from a patient with common variable immunodeficiency (CVID) and from infants. Our findings reveal that small intestinal HIEs, but not colonoids, from adults, H9tHIEs, HIEs from a CVID patient, and HIEs from infants support HuNoV replication with segment and strain-specific differences in viral infection. J4 FUT2-KI HIEs exhibit the highest susceptibility to HuNoV infection, allowing the cultivation of a broader range of GI and GII HuNoV strains than previously reported. Overall, these results contribute to a deeper understanding of HuNoVs and highlight the transformative potential of HIE cultures in HuNoV research., Importance: HuNoVs cause global diarrheal illness and chronic infections in immunocompromised patients. This manuscript reports approaches for cultivating HuNoVs in secretor positive human intestinal enteroids (HIEs). HuNoV infectivity was compared in new HIE models, including ones from i) different intestinal segments of single donors, ii) human embryonic stem cell-derived organoids transplanted into mice, iii) genetically-modified lines, and iv) a patient with chronic variable immunodeficiency disease. HIEs from small intestine, but not colon, support HuNoV replication with donor, segment and strain-specific variations. Unexpectedly, HIEs from one donor are resistant to GII.3 infection. The genetically-modified J4 FUT2-KI HIEs enable cultivation of a broad range of GI and GII genotypes. New insights into strain-specific differences in HuNoV replication in HIEs support this platform for advancing understanding of HuNoV biology and developing potential therapeutics.
- Published
- 2024
- Full Text
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27. RNA-dependent RNA polymerase of predominant human norovirus forms liquid-liquid phase condensates as viral replication factories.
- Author
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Kaundal S, Anish R, Ayyar BV, Shanker S, Kaur G, Crawford SE, Pollet J, Stossi F, Estes MK, and Prasad BVV
- Abstract
Many viral proteins form biomolecular condensates via liquid-liquid phase separation (LLPS) to support viral replication and evade host antiviral responses, and thus, they are potential targets for designing antivirals. In the case of non-enveloped positive-sense RNA viruses, forming such condensates for viral replication is unclear and less understood. Human noroviruses (HuNoV) are positive-sense RNA viruses that cause epidemic and sporadic gastroenteritis worldwide. Here, we show that the RNA-dependent-RNA polymerase (RdRp) of pandemic GII.4 HuNoV forms distinct condensates that exhibit all the signature properties of LLPS with sustained polymerase activity and the capability of recruiting components essential for viral replication. We show that such condensates are formed in HuNoV-infected human intestinal enteroid cultures and are the sites for genome replication. Our studies demonstrate the formation of phase separated condensates as replication factories in a positive-sense RNA virus, which plausibly is an effective mechanism to dynamically isolate RdRp replicating the genomic RNA from interfering with the ribosomal translation of the same RNA., Competing Interests: Competing interests: The authors declare that they have no competing interests.
- Published
- 2024
- Full Text
- View/download PDF
28. 2'-Fucosyllactose Inhibits Human Norovirus Replication in Human Intestinal Enteroids.
- Author
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Patil K, Ayyar BV, Neill FH, Bode L, Estes MK, Atmar RL, and Ramani S
- Abstract
Human noroviruses (HuNoVs) are the leading cause of acute gastroenteritis worldwide. Currently, there are no targeted antivirals for the treatment of HuNoV infection. Histo-blood group antigens (HBGAs) on the intestinal epithelium are cellular attachment factors for HuNoVs; molecules that block the binding of HuNoVs to HBGAs thus have the potential to be developed as antivirals. Human milk oligosaccharides (HMOs) are glycans in human milk with structures analogous to HBGAs. HMOs have been shown to act as decoy receptors to prevent the attachment of multiple enteric pathogens to host cells. Previous X-ray crystallography studies have demonstrated the binding of HMO 2'-fucosyllactose (2'FL) in the same pocket as HBGAs for some HuNoV strains. We evaluated the effect of 2'FL on the replication of a globally dominant GII.4 Sydney [P16] HuNoV strain using human intestinal enteroids (HIEs) from adults and children. A significant reduction in GII.4 Sydney [P16] replication was seen in duodenal and jejunal HIEs from multiple adult donors, all segments of the small intestine from an adult organ donor and in two pediatric duodenal HIEs. However, 2'FL did not inhibit HuNoV replication in two infant jejunal HIEs that had significantly lower expression of α1-2-fucosylated glycans. 2'FL can be synthesized in large scale, and safety and tolerance have been assessed previously. Our data suggest that 2'FL has the potential to be developed as a therapeutic for HuNoV gastroenteritis.
- Published
- 2024
- Full Text
- View/download PDF
29. Bile acid-sensitive human norovirus strains are susceptible to sphingosine-1-phosphate receptor 2 inhibition.
- Author
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Tenge V, Vijayalakshmi Ayyar B, Ettayebi K, Crawford SE, Shen YT, Neill FH, Atmar RL, and Estes MK
- Abstract
Human noroviruses (HuNoVs) are a diverse group of RNA viruses that cause both endemic and pandemic acute viral gastroenteritis. Previously we reported that many strains of HuNoV require bile or bile acid (BA) to infect human jejunal intestinal enteroid cultures. Of note, BA was not essential for replication of a pandemic-causing GII.4 HuNoV strain. Using the BA-requiring strain GII.3, we found that the hydrophobic BA GCDCA induces multiple cellular responses that promote replication in jejunal enteroids. Further, we found that chemical inhibition of the G-protein coupled receptor, sphingosine-1- phosphate receptor 2 (S1PR2), by JTE-013 reduced both GII.3 infection in a dose- dependent manner and cellular uptake in enteroids. Herein, we sought to determine if S1PR2 is required by other BA-dependent HuNoV strains and BA-independent GII.4, and if S1PR2 is required for BA-dependent HuNoV infection in other segments of the small intestine. We found JTE-013 inhibition of S1PR2 in jejunal HIEs reduces GI.1, GII.3, and GII.17 (BA-dependent) but not the GII.4 Sydney variant (BA-independent) infection, providing additional evidence of strain-specific differences in HuNoV infection. GII.3 infection of duodenal, jejunal and ileal lines derived from the same individual was also reduced with S1PR2 inhibition, indicating a common mechanism of BA-dependent infection among multiple segments of the small intestine. Our results support a model where BA-dependent HuNoV exploit the activation of S1PR2 by BA to infect the entire small intestine., Importance: Human noroviruses (HuNoVs) are important viral human pathogens that cause both outbreaks and sporadic gastroenteritis. These viruses are diverse, and many strains are capable of infecting humans. Our previous studies have identified strain-specific requirements for hydrophobic bile acids (BAs) to infect intestinal epithelial cells. Moreover, we identified a BA receptor, sphingosine-1-phosphate receptor 2 (S1PR2), required for infection by a BA-dependent strain. To better understand how various HuNoV strains enter and infect the small intestine and the role of S1PR2 in HuNoV infection, we evaluated infection by additional HuNoV strains using an expanded repertoire of intestinal enteroid cell lines. We found that multiple BA-dependent strains, but not a BA- independent strain, all required S1PR2 for infection. Additionally, BA-dependent infection required S1PR2 in multiple segments of the small intestine. Together these results indicate S1PR2 has value as a potential therapeutic target for BA-dependent HuNoV infection.
- Published
- 2024
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30. New Insights and Enhanced Human Norovirus Cultivation in Human Intestinal Enteroids.
- Author
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Ettayebi K, Tenge VR, Cortes-Penfield NW, Crawford SE, Neill FH, Zeng XL, Yu X, Ayyar BV, Burrin D, Ramani S, Atmar RL, and Estes MK
- Subjects
- Child, Child, Preschool, Culture Media, Humans, Infant, Intestinal Mucosa cytology, Stem Cells cytology, Virus Replication physiology, Intestinal Mucosa virology, Norovirus growth & development, Organoids virology
- Abstract
Human noroviruses (HuNoVs) are the leading cause of epidemic and sporadic acute gastroenteritis worldwide. We previously demonstrated human intestinal stem cell-derived enteroids (HIEs) support cultivation of several HuNoV strains. However, HIEs did not support virus replication from every HuNoV-positive stool sample, which led us to test and optimize new medium conditions, identify characteristics of stool samples that allow replication, and evaluate consistency of replication over time. Optimization of our HIE-HuNoV culture system has shown the following: (i) a new HIE culture medium made with conditioned medium from a single cell line and commercial media promotes robust replication of HuNoV strains that replicated poorly in HIEs grown in our original culture medium made with conditioned media from 3 separate cell lines; (ii) GI.1, 11 GII genotypes (GII.1, GII.2, GII.3, GII.4, GII.6, GII.7, GII.8, GII.12, GII.13, GII.14, and GII.17), and six GII.4 variants can be cultivated in HIEs; (iii) successful replication is more likely with virus in stools with higher virus titers; (iv) GII.4_Sydney_2012 virus replication was reproducible over 3 years; and (v) HuNoV infection is restricted to the small intestine, based on replication of two viral strains in duodenal and ileal HIEs, but not colonoids, from two susceptible donors. These results improve the HIE culture system for HuNoV replication. Use of HIEs by several laboratories worldwide to study the molecular mechanisms that regulate HuNoV replication confirms the usefulness of this culture system, and our optimized methods for virus replication will advance the development of effective therapies and methods for virus control. IMPORTANCE Human noroviruses (HuNoVs) are highly contagious and cause acute and sporadic diarrheal illness in all age groups. In addition, chronic infections occur in immunocompromised cancer and transplant patients. These viruses are antigenically and genetically diverse, and there are strain-specific differences in binding to cellular attachment factors. In addition, new discoveries are being made on strain-specific differences in virus entry and replication and the epithelial cell response to infection in human intestinal enteroids. Human intestinal enteroids are a biologically relevant model to study HuNoVs; however, not all strains can be cultivated at this time. A complete understanding of HuNoV biology thus requires cultivation conditions that will allow the replication of multiple strains. We report optimization of HuNoV cultivation in human intestinal enteroid cultures to increase the numbers of cultivatable strains and the magnitude of replication, which is critical for testing antivirals, neutralizing antibodies, and methods of virus inactivation., (Copyright © 2021 Ettayebi et al.)
- Published
- 2021
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31. Genetic Manipulation of Human Intestinal Enteroids Demonstrates the Necessity of a Functional Fucosyltransferase 2 Gene for Secretor-Dependent Human Norovirus Infection.
- Author
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Haga K, Ettayebi K, Tenge VR, Karandikar UC, Lewis MA, Lin SC, Neill FH, Ayyar BV, Zeng XL, Larson G, Ramani S, Atmar RL, and Estes MK
- Subjects
- Genetic Predisposition to Disease, Humans, Intestine, Small cytology, Intestine, Small virology, Norovirus pathogenicity, Organoids enzymology, Virus Replication, Galactoside 2-alpha-L-fucosyltransferase, Blood Group Antigens metabolism, Caliciviridae Infections genetics, Fucosyltransferases genetics, Fucosyltransferases metabolism, Intestine, Small enzymology, Organoids virology
- Abstract
Human noroviruses (HuNoVs) are the leading cause of nonbacterial gastroenteritis worldwide. Histo-blood group antigen (HBGA) expression is an important susceptibility factor for HuNoV infection based on controlled human infection models and epidemiologic studies that show an association of secretor status with infection caused by several genotypes. The fucosyltransferase 2 gene ( FUT2 ) affects HBGA expression in intestinal epithelial cells; secretors express a functional FUT2 enzyme, while nonsecretors lack this enzyme and are highly resistant to infection and gastroenteritis caused by many HuNoV strains. These epidemiologic associations are confirmed by infections in stem cell-derived human intestinal enteroid (HIE) cultures. GII.4 HuNoV does not replicate in HIE cultures derived from nonsecretor individuals, while HIEs from secretors are permissive to infection. However, whether FUT2 expression alone is critical for infection remains unproven, since routinely used secretor-positive transformed cell lines are resistant to HuNoV replication. To evaluate the role of FUT2 in HuNoV replication, we used CRISPR or overexpression to genetically manipulate FUT2 gene function to produce isogenic HIE lines with or without FUT2 expression. We show that FUT2 expression alone affects both HuNoV binding to the HIE cell surface and susceptibility to HuNoV infection. These findings indicate that initial binding to a molecule(s) glycosylated by FUT2 is critical for HuNoV infection and that the HuNoV receptor is present in nonsecretor HIEs. In addition to HuNoV studies, these isogenic HIE lines will be useful tools to study other enteric microbes where infection and/or disease outcome is associated with secretor status. IMPORTANCE Several studies have demonstrated that secretor status is associated with susceptibility to human norovirus (HuNoV) infection; however, previous reports found that FUT2 expression is not sufficient to allow infection with HuNoV in a variety of continuous laboratory cell lines. Which cellular factor(s) regulates susceptibility to HuNoV infection remains unknown. We used genetic manipulation of HIE cultures to show that secretor status determined by FUT2 gene expression is necessary and sufficient to support HuNoV replication based on analyses of isogenic lines that lack or express FUT2. Fucosylation of HBGAs is critical for initial binding and for modification of another putative receptor(s) in HIEs needed for virus uptake or uncoating and necessary for successful infection by GI.1 and several GII HuNoV strains., (Copyright © 2020 Haga et al.)
- Published
- 2020
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32. Hyaline-Vascular Type Castleman's Disease, Sarcoidosis, and Crohns Disease.
- Author
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Gupta A, Ayyar B, Zia H, Chen W, Harris S, and Naina HV
- Abstract
Sarcoidosis and Crohns disease have been associated with increased long term risk of lymphoproliferative disorders, including lymphomas. Newly developed lymphadenopathy in a patient with these disorders should prompt pathological evaluation. Castleman's disease is a lymphoproliferative disorder characterized by enlarged hyperplastic lymph nodes with regressed follicles surrounded by expanded mantle zones of small lymphocytes, and interfollicular vascular proliferation in the hyaline-vascular type. Similar to sarcoidosis and Crohns disease, its etiology is incompletely understood, although immune dysregulation, genetic factors and infectious and environmental factors are thought to play a role in all three diseases. Interleukin-6 is a possible pathological common factor between these three disease processed. Unicentric, hyaline-vascular type Castleman's disease can be treated successfully with complete surgical resection. We report a patient with long history of sarcoidosis and Crohns disease with newly developed lymphadenopathy which was found to be due to Castleman's disease.
- Published
- 2016
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33. The C-terminal heavy-chain domain of botulinum neurotoxin a is not the only site that binds neurons, as the N-terminal heavy-chain domain also plays a very active role in toxin-cell binding and interactions.
- Author
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Ayyar BV, Aoki KR, and Atassi MZ
- Subjects
- Acetylcholine metabolism, Animals, Binding Sites genetics, Botulinum Toxins, Type A genetics, Cell Line, Tumor, Clostridium botulinum pathogenicity, Humans, Mice, Mice, Inbred ICR, Peptide Fragments genetics, Protein Binding, Protein Structure, Tertiary, Protein Transport physiology, Synaptosomes metabolism, Torticollis drug therapy, Botulinum Toxins, Type A metabolism, Neuroblastoma metabolism, Neurons metabolism, Peptide Fragments metabolism, Peptide Fragments pharmacology
- Abstract
Botulinum neurotoxins (BoNTs) possess unique specificity for nerve terminals. They bind to the presynaptic membrane and then translocate intracellularly, where the light-chain endopeptidase cleaves the SNARE complex proteins, subverting the synaptic exocytosis responsible for acetylcholine release to the synaptic cleft. This inhibits acetylcholine binding to its receptor, causing paralysis. Binding, an obligate event for cell intoxication, is believed to occur through the heavy-chain C-terminal (HC) domain. It is followed by toxin translocation and entry into the cell cytoplasm, which is thought to be mediated by the heavy-chain N-terminal (HN) domain. Submolecular mapping analysis by using synthetic peptides spanning BoNT serotype A (BoNT/A) and mouse brain synaptosomes (SNPs) and protective antibodies against toxin from mice and cervical dystonia patients undergoing BoNT/A treatment revealed that not only regions of the HC domain but also regions of the HN domain are involved in the toxin binding process. Based on these findings, we expressed a peptide corresponding to the BoNT/A region comprising HN domain residues 729 to 845 (HN729-845). HN729-845 bound directly to mouse brain SNPs and substantially inhibited BoNT/A binding to SNPs. The binding involved gangliosides GT1b and GD1a and a few membrane lipids. The peptide bound to human or mouse neuroblastoma cells within 1 min. Peptide HN729-845 protected mice completely against a lethal BoNT/A dose (1.05 times the 100% lethal dose). This protective activity was obtained at a dose comparable to that of the peptide from positions 967 to 1296 in the HC domain. These findings strongly indicate that HN729-845 and, by extension, the HN domain are fully programmed and equipped to bind to neuronal cells and in the free state can even inhibit the binding of the toxin., (Copyright © 2015, American Society for Microbiology. All Rights Reserved.)
- Published
- 2015
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34. Affinity chromatography for antibody purification.
- Author
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Arora S, Ayyar BV, and O'Kennedy R
- Subjects
- Antibodies isolation & purification, Chromatography, Affinity methods
- Abstract
The availability of purified antibodies is prerequisite for many applications and the appropriate choice(s) of antibody-purification steps is crucial. Numerous methods have been developed for the purification of antibodies; however, affinity chromatography-based methods are the most extensively utilized. These methods are based on highly specific and reversible biological interactions between two molecules (e.g., between receptor and ligand or antibody and antigen). Affinity chromatography offers very high selectivity, involving minimal steps, providing simplicity of approach and rapidity. Implementing an effective protocol often requires meticulous planning and testing in order to achieve high purity and yields of desired antibody types/subtypes. This chapter describes the basic techniques for purification of monoclonal, polyclonal, and recombinant antibodies employing affinity chromatography.
- Published
- 2014
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35. Current and emerging strategies in the management of Crohn's disease.
- Author
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Randall C, Vizuete J, Wendorf G, Ayyar B, and Constantine G
- Subjects
- Anti-Bacterial Agents therapeutic use, Antibodies, Monoclonal therapeutic use, Crohn Disease diagnosis, Gastrointestinal Agents therapeutic use, Humans, Immunologic Factors therapeutic use, Salicylates therapeutic use, Steroids therapeutic use, Crohn Disease drug therapy
- Abstract
Diarrhoea is a common manifestation of Crohn's disease (CD). We advocate an evidence-based approach to treat the underlying disease and reduce symptoms. This article reviews disease grading systems, current concepts in medical therapy, and other treatments that may become available in the future. While some drug classes (e.g. salicylates, immunomodulators) have been studied for many decades, newer approaches including anti-TNF monoclonal antibodies (biologics), and gut selective agents are changing the paradigm we use to treat this debilitating condition., (Copyright © 2012. Published by Elsevier Ltd.)
- Published
- 2012
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36. Surface plasmon resonance for vaccine design and efficacy studies: recent applications and future trends.
- Author
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Hearty S, Conroy PJ, Ayyar BV, Byrne B, and O'Kennedy R
- Subjects
- AIDS Vaccines immunology, Animals, Binding Sites, Cancer Vaccines immunology, HIV Envelope Protein gp120 immunology, HIV Envelope Protein gp41 immunology, High-Throughput Screening Assays, Humans, Influenza Vaccines immunology, Malaria Vaccines immunology, Surface Plasmon Resonance methods, Vaccines immunology
- Abstract
The lack of a clear correlation between design and protection continues to present a barrier to progress in vaccine research. In this article, we outline how surface plasmon resonance (SPR) biosensors are emerging as tools to help resolve some of the key biophysical determinants of protection and, thereby, facilitate more rational vaccine design campaigns. SPR technology has contributed significantly to our understanding of the complex biophysical determinants of HIV neutralization and offers a platform for preclinical evaluation of vaccine candidates. In particular, the concept of reverse-engineering HIV vaccine targets based on known broadly neutralizing antibody modalities is explored and extended to include other infectious diseases, such as malaria and influenza, and other diseases such as cancer. The analytical capacity afforded by SPR includes serum screening to monitor immune responses and highly efficient quality-control surveillance measures. These are discussed alongside key technological advances, such as developments in sample throughput, and a perspective predicting continued growth and diversification of the role of SPR in vaccine development is proposed.
- Published
- 2010
- Full Text
- View/download PDF
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