Forests play an integral role in the terrestrial water cycle and link exchanges of water between the land surface and the atmosphere. To examine the effects of an intermediate disturbance on forest water cycling, we compared vertical profiles of stable water vapor isotopes in two closely located forest sites in northern lower Michigan. At one site, all canopy‐dominant early successional species were stem girdled to induce mortality and accelerate senescence. At both sites, we measured the isotopic composition of atmospheric water vapor at six heights during three seasons (spring, summer, and fall) and paired vertical isotope profiles with local meteorology and sap flux. Disturbance had a substantial impact on local water cycling. The undisturbed canopy was moister, retained more transpired vapor, and at times was poorly mixed with the free atmosphere above the canopy. Differences between the disturbed and undisturbed sites were most pronounced in the summer when transpiration was high. Differences in forest structure at the two sites also led to more isotopically stratified vapor within the undisturbed canopy. Our findings suggest that intermediate disturbance may increase mixing between the surface layer and above‐canopy atmosphere and alter ecosystem‐atmosphere gas exchange. Plain Language Summary: Forests play an important role in the climate system and link water fluxes between the land surface and the atmosphere. Here we compare water vapor isotopes in two adjacent forest sites in the northern lower peninsula of Michigan to understand the effects of intermediate disturbance and canopy structure on forest water cycling. One site is dominated by aspen and birch and has a thick, closed canopy. All of the aspen and birch were killed at the second site. As a result, the disturbed site has a more open‐canopy structure. From our comparison, we found that both the species of tree and the spacing around trees are important controls on forest water cycling. With more space between trees, air mixes more freely into the canopy, which dries the forest air. Alternatively, air may be poorly mixed within and above thick, closed canopies. Key Points: Intermediate disturbance can change the contribution of entrained, evaporated, and transpired water vapor to forest canopiesCanopy gaps increase hydrologic mixing between the surface layer and the free atmosphereThe assumption of a well‐mixed canopy atmosphere may be violated in the case of thick, homogeneous forest canopies [ABSTRACT FROM AUTHOR]