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Mushroom-forming fungi (Agaricomycetes) have the greatest morphological diversity and complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles in the ecosystem, including wood decomposers, pathogens or mycorrhizal mutualists. Despite the importance of mushroom-forming fungi, large-scale patterns of their evolutionary history are poorly known, in part due to the lack of a comprehensive and dated molecular phylogeny. Here, using multigene and genome-based data, we assemble a 5,284-species phylogenetic tree and infer ages and broad patterns of speciation/extinction and morphological innovation in mushroom-forming fungi. Agaricomycetes started a rapid class-wide radiation in the Jurassic, coinciding with the spread of (sub)tropical coniferous forests and a warming climate. A possible mass extinction, several clade-specific adaptive radiations and morphological diversification of fruiting bodies followed during the Cretaceous and the Paleogene, convergently giving rise to the classic toadstool morphology, with a cap, stalk and gills (pileate-stipitate morphology). This morphology is associated with increased rates of lineage diversification, suggesting it represents a key innovation in the evolution of mushroom-forming fungi. The increase in mushroom diversity started during the Mesozoic-Cenozoic radiation event, an era of humid climate when terrestrial communities dominated by gymnosperms and reptiles were also expanding.

Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.

Melanoleuca is one of the taxonomically most complicated genera of Agaricomycetes. The aim of this study is a taxonomic revision of European specimens confused with M. angelesiana A.H. Sm. and a delimitation of four species, M. brachyspora Harmaja, M. graminicola (Velen.) Kühner & Maire, M. rufipes Bon and M. stridula (Fr.) Singer. The research is based on macro- and micromorphological characters and the multigene phylogenetic analyses of a combined (ITS, rpb2, and tef1) dataset. According to the results, two new species are proposed: M. monticola sp. nov. accommodating European specimens previously confused with the species M. angelesiana from America and M. romanensis sp. nov. from Italy. Moreover, American specimens identified as M. angelesiana belong to three different phylogenetic species (M. angelesiana sensu typi, M. acystidiata aff., and one more separate lineage). M. graminicola is emended and the respective epitype designated. An identification key to the European species of subg. Urticocystis is provided. [ABSTRACT FROM AUTHOR]

We studied the taxonomy of Pluteus podospileus and similar species using morphological and molecular (nrITS, TEF1-α) data, including a detailed study of the type collections of P. inflatus var. alneus, Pluteus minutissimus f. major, and P. granulatus var. tenellus. Within the P. podospileus complex, we phylogenetically confirmed six species in Europe, five in Asia, and eight in North America. Based on our results, we recognize P. seticeps as a separate species occurring in North America, while P. podospileus is limited to Eurasia. We describe six new species and a new variety: P. absconditus, P. fuscodiscus, P. gausapatus, P. inexpectatus, P. millsii, and P. notabilis and its variety, P. notabilis var. insignis. We elevate Pluteus seticeps var. cystidiosus to species rank as Pluteus cystidiosus. Based on the holotype of P. inflatus var. alneus, collections of P. inflatus identified by Velenovský, and several modern collections, we resurrect the name P. inflatus. Based on molecular analyses of syntypes of Pluteus minutissimus f. major and a holotype of Pluteus granulatus var. tenellus, we synonymize them under P. inflatus. We also increase our knowledge about the morphology and distribution of P. cutefractus. [ABSTRACT FROM AUTHOR]

Specimens of Marasmiellus mesosporus from various parts of the world were morphologically and phylogenetically studied. The results confirmed its identity with M. dunensis, described from southern Europe, and M. arenaceus, described from Japan. Marasmiellus mesosporus is a fungus connected with coastal sandy dunes having a wide distribution being collected in southeastern North America, Lesser and Greater Antilles, Pacific Islands, southern Europe and South and East Asia. Its comparison with phylogenetically and morphologically related species is provided. A new genus Paramarasmius containing P. palmivorus, as the type species, and P. mesosporus is described on the base of phylogenetic analyses of ITS and LSU rDNA sequences. A new combination Collybiopsis carneopallida is also proposed. [ABSTRACT FROM AUTHOR]

Agaric fungi are an important group of macromycetes with diverse ecological and functional properties, yet are poorly studied in many parts of the world. Here, we comprehensively analyzed 558 agaric species in Iran to reveal their resources of edible and poisonous species as well as their ecological guilds and luminescence potential. We also made a thorough survey of the antioxidant activity of the species. Phylogenetic relationships were reconstructed based on nuclear ribosomal LSU and ITS sequences. Our results reveal that agarics of Iran comprise about 189 edible, 128 poisonous, 254 soil saprotrophic, 172 ectomycorrhizal, 146 wood-inhabiting, 18 leaf/litter-inhabiting, 9 parasitic, and 19 luminescent species. Twenty percent of the Iranian agaric species possess antioxidant activity, phylogenetically distributed in four orders and 21 agaric families. About 5% of the antioxidant species can be considered strong antioxidants, many of which are also edible and could be utilized to develop functional foods. This is the first study combining phylogeny and antioxidant potential of agaric mushrooms in a large scale, and the obtained results would guide the selection of agaric taxa to be examined in the future for taxonomic revisions, biotechnological applications, and applied phylogeny studies. [ABSTRACT FROM AUTHOR]

We studied the taxonomy of Pluteus romellii, and morphologically similar Holarctic species in the/romellii clade of section Celluloderma, using morphological and molecular data (nrITS, TEF1-α). Pluteus romellii is lectotypified and epitypified and accepted as an exclusively Eurasian species. Pluteus lutescens and P. pallescens are considered synonyms of P. romellii. Pluteus fulvibadius is accepted as a related, but separate, North American species. Five species in the/romellii clade are described as new to science: two from North America (P. austrofulvus and P. parvisporus), one from Asia (P. parvicarpus), one from Europe (P. siccus), and one widely distributed across the Holarctic region (P. vellingae). Basidioma size, pileus color, lamellae color, basidiospore size, hymenial cystidia shape and size, habitat and geographical distribution help separate the species described here, but in some instances only molecular data allows for confident identification. The current status of P. californicus, P. melleipes, P. romellii var. luteoalbus, P. splendidus, P. sternbergii and P. sulphureus is discussed. [ABSTRACT FROM AUTHOR]

Based on phylogenetic analyses, some newly studied Chinese mushroom specimens were found to represent two distinct species within the genus Gymnopus. Along with G. fusipes (sect. Gymnopus) they form a distinct clade with high support, although their macromorphological characters seem to be closer to members of Gymnopus sect. Levipedes or sect. Vestipedes (Collybiopsis). When examined in detail, their micromorphological characters, especially the type of pileipellis, support them as new members of G. sect. Gymnopus. Therefore, two new species, G. omphalinoides and G. schizophyllus, and the emended circumscription of sect. Gymnopus are proposed in this paper. Detailed morphological descriptions, colour photos, illustrations of the two new species, morphological comparisons with similar taxa and the molecular-phylogenetic analyses of the combined nrITS and nrLSU data are presented. A key to the known species of G. sect. Gymnopus is also presented. [ABSTRACT FROM AUTHOR]

Revision of the taxonomically complicated European Melanoleuca taxa with well-developed macrocystidia (subgenus Melanoleuca) is presented. The species are delimited by macro- and micromorphological characters and by multilocus molecular data based on internal transcribed spacer (ITS), second largest subunit of RNA polymerase I (rpb2), and translation elongation factor 1-alpha (tef1) genes. The study is based on both type material and recent collections. Phylogenetically, these taxa form 10 clades recognized as 11 separate species: M. albomarginata, M. ammophila, M. bataillei, M. cavipes, M. friesii, M. granadensis, M. melaleuca, M. pallidicutis, M. polioleuca, M. strictipes, and M. variabilis. Three species, M. albomarginata, M. ammophila, and M. variabilis, are described as new. Melanoleuca melaleuca is discussed here as the type species of the genus. Discussion of other older names and their taxonomic status is also provided. [ABSTRACT FROM AUTHOR]

Desarmillaria caespitosa, a North American vicariant species of European D. tabescens, is redescribed in detail based on recent collections from the USA and Mexico. This species is characterized by morphological features and multilocus phylogenetic analyses using portions of nuc rDNA 28S (28S), translation elongation factor 1-alpha (tef1), the second largest subunit of RNA polymerase II (rpb2), actin (act), and glyceraldehyde-3-phosphate dehydrogenase (gpd). A neotype of D. caespitosa is designated here. Morphological and genetic differences between D. caespitosa and D. tabescens were identified. Morphologically, D. caespitosa differs from D. tabescens by having wider basidiospores, narrower cheilocystidia, which are often irregular or mixed (regular, irregular, or coralloid), and narrower caulocystidia. Phylogenetic analyses of five independent gene regions show that D. caespitosa and D. tabescens are separated by nodes with strong support. The new combination, D. caespitosa, is proposed. [ABSTRACT FROM AUTHOR]

Melanoleuca is one of the taxonomically most complicated genera of Agaricomycetes with several taxonomically lineages. The subgenus Urticocystis of the genus Melanoleuca contains species with either urticoid or absent cheilocystidia. In this paper, three new European species, Melanoleuca galbuserae, Melanoleuca fontenlae, and Melanoleuca acystidiata are described as new to science. Melanoleuca galbuserae, related to Melanoleuca stepposa and Melanoleuca tristis, was discovered in alpine grasslands in North Italy. The type specimens and recent collections of Melanoleuca angelesiana, Melanoleuca castaneofusca, Melanoleuca luteolosperma, Melanoleuca pseudopaedida, and Melanoleuca robertiana were sequenced and morphologically examined. Moreover, the related Melanoleuca microcephala and Melanoleuca paedida were included in morphological examination and DNA sequence analyses. All the species were delimited by macro- and micromorphological characters and the multigene phylogenetic analyses of a combined (ITS, rpb2, and tef1) dataset on the basis of the species tree estimation. In accordance with new molecular and morphological data, we suggest taxonomic reappraisal of M. pseudopaedida and M. robertiana, and M. fontenlae and M. acystidiata are proposed as new species. The differences between the type material of M. angelesiana from the USA and European M. angelesiana specimens are discussed. [ABSTRACT FROM AUTHOR]

In this third contribution involving new Cantharellus species from South Korea, two new species are introduced. In addition, we document a first report of the recently described Japanese Cantharellus anzutake outside of Japan based on identical ITS sequence data. Cantharellus citrinus sp. nov. is introduced as a new member of subg. Cinnabarini, to which the closely related Korean C. albovenosus and Chinese C. phloginus also belong. Cantharellus curvatus sp. nov. is introduced as a new member of subg. Parvocantharellus, in which the Korean C. koreanus was recently placed. The respective placements of the new taxa are significantly supported by a phylogenetic analysis of sequences from the transcription elongation factor (tef-1). [ABSTRACT FROM AUTHOR]

Collections of Gymnopus sect. Levipedes from the Republic of Korea have been studied. Two new species, Gymnopus dryophiloides and G. brunneodiscus, are described based on their macro- and micromorphological and phylogenetic characteristics. Three other species, referred to as Gymnopus spp. 1, 2, and 3, are distinguished as separate taxa without formal descriptions. Taxonomic and phylogenetic positions of all taxa have been inferred and confirmed by analyses of ITS and LSU sequence data. Their detailed descriptions, illustrations and an identification key are provided. [ABSTRACT FROM AUTHOR]

The taxonomy and phylogeny of the hydropoid clade (genera Clitocybula s.l., Megacollybia , Leucoinocybe gen. nov., Hydropus , Trogia , Gerronema , Porotheleum and Lignomphalia gen. nov.) in Europe is studied using morphological and molecular approaches; the first three genera in detail including all known European species. Only two European species remain in Clitocybula s.str., Clitocybula lacerata and Clitocybula familia. The European C. lacerata is a species complex which should be treated as C. lacerata agg. at the current state of knowledge. A neotype originating from type area was designated to fix the application of the name. The presence of American species Clitocybula abundans in Europe is insufficiently proved. " Clitocybula dryadicola ˮ belongs to the genus Hydropus , and Clitocybula tilieti has an unclear systematic position. The results showed that Megacollybia and Leucoinocybe represent independent genera separated from Clitocybula. The genus Leucoinocybe is validly published with two European species, Leucoinocybe lenta and Leucoinocybe taniae. " Clitocybula flavoaurantia " proved to be conspecific with the latter species. The genus Lignomphalia is published for " Pseudoomphalina lignicola ", a lignicolous omphalinoid species. The Indian " Clitocybula sulcata " is transferred to Leucoinocybe and " Clitocybula atrialba " to Gerronema. The first European records of Megacollybia marginata are published. [ABSTRACT FROM AUTHOR]

Hygrophorus yadigarii (Hygrophoraceae/Basidiomycota) is described as a new species for science based on basidiomata collected from Maçka, Trabzon, Turkey. The new taxon is quite different even from the closest relatives, easily distinguished by the other species because of its grayish to ash-colored, gregarious to subcaespitose, sticky basidioma; a slightly umbonate to depressed pileus; a cylindrical to clavate, grayish stipe; ellipsoid and smooth basidiospores; quite long basidia; clavate, cylindrical or narrowly utriform, apically pyriform or strangulated cheilocystidia; and gelatinous pileipellis. A description with field and micromorphological illustrations, a phylogenetic tree, a simple key, a comparison chart including similar species, and a short discussion are provided. [ABSTRACT FROM AUTHOR]

Melanoleuca strictipes (P. Karst.) Metrod, a species characterised by whitish colours and macrocystidia in the hymenium, has for years been identified as several different species. Based on morphological studies of 61 specimens from eight countries and a phylogenetic analysis of ITS sequences, including type material of M. subalpina and M. substrictipes var. sarcophyllum, we confirm conspecificity of these specimens and their identity as M. strictipes. The lectotype of this species is designated here. The morphological and ecological characteristics of this species are presented. [ABSTRACT FROM AUTHOR]