1,863 results on '"Alex, Y."'
Search Results
2. Asperger’s syndrome – about time to rename it?
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Bearer, Cynthia, Abman, Steven H., Agostoni, Carlo, Ballard, Phil, Bliss, Joe, de Boode, Willem P., Canpolat, Fuat Emre, Chalak, Lina, Cilio, Maria Roberta, Dammann, Olaf, Davis, Jonathan, El-Metwally, Dina, Ferriero, Donna, Ford, Stephanie, Fuentes-Afflick, Elena, Gano, Dawn, Giussani, Dino, Gonzalez, Fernando, Gunn, Alistair, Hogeveen, Marije, Huang, Alex Y., Kaplan, Jenny, Klebanoff, Mark, Lachman, Peter, Mak, Robert, Malhotra, Atul, Miller, Steven, Mitchell, William Beau, Molloy, Eleanor, Mulkey, Sarah B., Roland, Damian, Sampath, Venkatesh, Sant’Anna, Guilherme, Schaff, Pam, Singer, Lynn T., Stroustrup, Annemarie, Tingay, David, Tiribelli, Claudio, Toldi, Gergely, Tryggestad, Jeanie, Valente, Enza Maria, Wilson-Costello, Dee, and Zupancic, John
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- 2024
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3. Overlapping Spots of Photodynamic Therapy for Treatment of Choroidal Hemangioma in Sturge-Weber Syndrome: A Case Report
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Alex Y. Pai, Michael M. Han, Sameh Mosaed, and Mohammad Riazi Esfahani
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sturge-weber syndrome ,choroidal hemangioma ,photodynamic therapy ,case report ,Ophthalmology ,RE1-994 - Abstract
Introduction: Photodynamic therapy (PDT) has shown substantial benefit in the treatment of choroidal hemangioma (CH) in recent years. This report describes the use of PDT with overlapping spots in a patient with Sturge-Weber syndrome (SWS) and large circumscribed CH. Case Presentation: A 9-year-old girl with SWS and a history of glaucoma in her left eye was referred to a retina clinic for possible macular changes. Examination revealed decreased vision in the left eye, pigmentary changes in the macula, and choroidal thickening in the posterior pole. After being lost to follow-up for 2 years, the patient returned with further vision deterioration with best-corrected visual acuity (BCVA) of 20/150 and new subretinal fluid (SRF). Imaging findings were consistent with a diagnosis of CH and SRF. PDT with verteporfin was initiated on the entire area with multiple overlapping spots, resulting in resolution of SRF and improvement in visual acuity and choroidal contour. At 18-month post-treatment, the patient’s BCVA was 20/25 with no recurrence of SRF or increased choroidal thickening. Significant pigmentary changes and subretinal hyper-reflective material were observed in the OCT of the treated area. Conclusion: Multiple overlapping laser spots of PDT can result in longstanding regression of large circumscribed CH in a patient with SWS with excellent final visual acuity. However, significant subretinal changes may also result following this method of treatment.
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- 2024
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4. Fusion Energy Sciences Exascale Requirements Review. An Office of Science review sponsored jointly by Advanced Scientific Computing Research and Fusion Energy Sciences, January 27-29, 2016, Gaithersburg, Maryland
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Chang, Choong-Seock, Greenwald, Martin, Riley, Katherine, Antypas, Katie, Coffey, Richard, Dart, Eli, Dosanjh, Sudip, Gerber, Richard, Hack, James, Monga, Inder, Papka, Michael E, Rotman, Lauren, Straatsma, Tjerk, Wells, Jack, Andre, R, Bernholdt, David, Bhattacharjee, Amitava, Bonoli, Paul, Boyd, Iain, Bulanov, Stepan, Cary, John R, Chen, Yang, Curreli, Davide, Ernst, Darin R, Ethier, Stephane, Green, David, Hager, Robert, Hakim, Ammar, Hassanein, A, Hatch, David, Held, ED, Howard, Nathan, Izzo, Valerie A, Jardin, Steve, Jenkins, TG, Jenko, Frank, Kemp, Andreas, King, Jacob, Kritz, Arnold, Krstic, Predrag, Kruger, Scott E, Kurtz, Rick, Lin, Zhihong, Loring, Burlen, Nandipati, Giridhar, Pankin, AY, Parker, Scott, Perez, Danny, Pigarov, Alex Y, Poli, Francesca, Pueschel, MJ, Rafiq, Tariq, Rübel, Oliver, Setyawan, Wahyu, Sizyuk, Valeryi A, Smithe, DN, Sovinec, CR, Turner, Miles, Umansky, Maxim, Vay, Jean-Luc, Verboncoeur, John, Vincenti, Henri, Voter, Arthur, Wang, Weixing, Wirth, Brian, Wright, John, and Yuan, X
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- 2022
5. Cholesterol-dependent LXR transcription factor activity represses pronociceptive effects of estrogen in sensory neurons and pain induced by myelin basic protein fragments
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Swathi K. Hullugundi, Jennifer Dolkas, Andrei V. Chernov, Tony L. Yaksh, Kelly A. Eddinger, Mila Angert, Glaucilene Ferreira Catroli, Alex Y. Strongin, Patrick M. Dougherty, Yan Li, Oswal Quehenberger, Aaron Armando, and Veronica I. Shubayev
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Neuropathic pain ,Oxysterol ,Cholesterol ,Liver x receptor ,LXR ,Myelin basic protein ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Background: A bioactive myelin basic protein (MBP) fragment, comprising MBP84-104, is released in sciatic nerve after chronic constriction injury (CCI). Intraneural injection (IN) of MBP84-104 in an intact sciatic nerve is sufficient to induce persistent neuropathic pain-like behavior via robust transcriptional remodeling at the injection site and ipsilateral dorsal root ganglia (DRG) and spinal cord. The sex (female)-specific pronociceptive activity of MBP84-104 associates with sex-specific changes in cholesterol metabolism and activation of estrogen receptor (ESR)1 signaling. Methods: In male and female normal and post-CCI rat sciatic nerves, we assessed: (i) cholesterol precursor and metabolite levels by lipidomics; (ii) MBP84-104 interactors by mass spectrometry of MBP84-104 pull-down; and (iii) liver X receptor (LXR)α protein expression by immunoblotting. To test the effect of LXRα stimulation on IN MBP84-104-induced mechanical hypersensitivity, the LXRα expression was confirmed along the segmental neuraxis, in DRG and spinal cord, followed by von Frey testing of the effect of intrathecally administered synthetic LXR agonist, GW3965. In cultured male and female rat DRGs exposed to MBP84-104 and/or estrogen treatments, transcriptional effect of LXR stimulation by GW3965 was assessed on downstream cholesterol transporter Abc, interleukin (IL)-6, and pronociceptive Cacna2d1 gene expression. Results: CCI regulated LXRα ligand and receptor levels in nerves of both sexes, with cholesterol precursors, desmosterol and 7-DHC, and oxysterol elevated in females relative to males. MBP84-104 interacted with nuclear receptor coactivator (Ncoa)1, known to activate LXRα, injury-specific in nerves of both sexes. LXR stimulation suppressed ESR1-induced IL-6 and Cacna2d1 expression in cultured DRGs of both sexes and attenuated MBP84-104-induced pain in females. Conclusion: The injury-released bioactive MBP fragments induce pronociceptive changes by selective inactivation of nuclear transcription factors, including LXRα. By Ncoa1 sequestration, bioactive MBP fragments render LXRα function to counteract pronociceptive activity of estrogen/ESR1 in sensory neurons. This effect of MBP fragments is prevalent in females due to high circulating estrogen levels in females relative to males. Restoring LXR activity presents a promising therapeutic strategy in management of neuropathic pain induced by bioactive MBP.
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- 2024
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6. Association of serum globulin with all-cause mortality in incident hemodialysis patients.
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Pai, Alex Y, Sy, John, Kim, Joseph, Kleine, Carola-Ellen, Edward, Jessica, Hsiung, Jui-Ting, Kovesdy, Csaba P, Kalantar-Zadeh, Kamyar, and Streja, Elani
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Biomedical and Clinical Sciences ,Clinical Sciences ,Assistive Technology ,Kidney Disease ,Cardiovascular ,Genetics ,Bioengineering ,Zero Hunger ,Good Health and Well Being ,Albumins ,Biomarkers ,Humans ,Inflammation ,Kidney Failure ,Chronic ,Malnutrition ,Proportional Hazards Models ,Renal Dialysis ,Retrospective Studies ,Serum Globulins ,albumin-to-globulin ratio ,globulin ,hemodialysis ,mortality ,protein ,Urology & Nephrology ,Clinical sciences - Abstract
BackgroundSerum globulin is a major component of total protein and can be elevated in inflammatory disease states. While inflammation is common in hemodialysis patients and associated with mortality and morbidity, the association between serum globulin and mortality has never been examined in hemodialysis patients.MethodsIn a retrospective cohort of 104 164 incident hemodialysis patients treated by a large dialysis organization from 2007 to 2011, we explored the association between baseline serum globulin, albumin: globulin (A:G) ratio and serum protein levels and all-cause, cardiovascular and infection-related mortality with adjustments for demographic variables and laboratory markers of malnutrition and inflammation using Cox proportional hazards models.ResultsPatients with a globulin concentration >3.8 g/dL had a higher all-cause and infection-related mortality risk {hazard ratio [HR] 1.11 [95% confidence interval (CI) 1.06-1.16] and HR 1.28 [95% CI 1.09-1.51], respectively} in the fully adjusted model when compared with the reference group of 3.0-
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- 2022
7. Promoting validation and cross-phylogenetic integration in model organism research
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Cheng, Keith C, Burdine, Rebecca D, Dickinson, Mary E, Ekker, Stephen C, Lin, Alex Y, Lloyd, KC Kent, Lutz, Cathleen M, MacRae, Calum A, Morrison, John H, O'Connor, David H, Postlethwait, John H, Rogers, Crystal D, Sanchez, Susan, Simpson, Julie H, Talbot, William S, Wallace, Douglas C, Weimer, Jill M, and Bellen, Hugo J
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Biological Sciences ,Bioinformatics and Computational Biology ,Underpinning research ,1.1 Normal biological development and functioning ,Generic health relevance ,Life Below Water ,Animals ,Biological Evolution ,Humans ,Phylogeny ,Reproducibility of Results ,Model organisms ,Technology ,Human diseases ,Omics ,Integration ,Phenomics ,Research resources ,Validation ,Medical and Health Sciences ,Developmental Biology ,Biological sciences ,Biomedical and clinical sciences - Abstract
Model organism (MO) research provides a basic understanding of biology and disease due to the evolutionary conservation of the molecular and cellular language of life. MOs have been used to identify and understand the function of orthologous genes, proteins, cells and tissues involved in biological processes, to develop and evaluate techniques and methods, and to perform whole-organism-based chemical screens to test drug efficacy and toxicity. However, a growing richness of datasets and the rising power of computation raise an important question: How do we maximize the value of MOs? In-depth discussions in over 50 virtual presentations organized by the National Institutes of Health across more than 10 weeks yielded important suggestions for improving the rigor, validation, reproducibility and translatability of MO research. The effort clarified challenges and opportunities for developing and integrating tools and resources. Maintenance of critical existing infrastructure and the implementation of suggested improvements will play important roles in maintaining productivity and facilitating the validation of animal models of human biology and disease.
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- 2022
8. Functional-Molecular Mechanisms of Sympathetic-Parasympathetic Dysfunction in PVC-Induced Cardiomyopathy Revealed by Dual Stressor PVC-Exercise Challenge
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Shoureshi, Pouria, Ahmad, Zain, Myadam, Rahul, Wang, Li, Rose, Brianna, Balderas-Villalobos, Jaime, Medina-Contreras, Juana, Das, Anindita, Uzelac, Ilija, Kaszala, Karoly, Ellenbogen, Kenneth A., Huizar, Jose F., and Tan, Alex Y.
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- 2024
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9. Advancing strategies towards the development of tissue engineering scaffolds: a review
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Pattanayak, Ipsita, Alex, Y., and Mohanty, Smita
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- 2023
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10. Pioneering bone regeneration: A review of cutting-edge scaffolds in tissue engineering
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Alex, Y., Vincent, Sumi, Divakaran, Nidhin, Uthappa, U.T., Srinivasan, Parthasarathy, Mubarak, Suhail, Al-Harthi, Mamdouh Ahmed, and Dhamodharan, Duraisami
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- 2024
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11. Sense of place and micro-business vulnerability to extreme weather in China
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Lo, Alex Y., Cheung, Lewis T.O., and Liu, Shuwen
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- 2024
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12. C2 translaminar screw fixation in pediatric occipitocervical fusion.
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Lee, Young M, Lu, Alex Y, Oh, Taemin, Hwang, Joan Y, Lu, Daniel C, and Sun, Peter P
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Cervical Vertebrae ,Atlanto-Axial Joint ,Humans ,Kyphosis ,Joint Instability ,Treatment Outcome ,Spinal Fusion ,Retrospective Studies ,Bone Screws ,Child ,Atlantoaxial fixation ,Occipitocervical instability ,Pediatric spine ,Spinal fusion ,Translaminar screw ,Pediatric ,Physical Injury - Accidents and Adverse Effects ,Clinical Sciences ,Neurology & Neurosurgery - Abstract
PurposeRigid occipitocervical (O-C) instrumentation can reduce the anterior pathology and has a high fusion rate in children with craniovertebral instability. Typically, axis (C2) screw fixation utilizes C1-C2 transarticular screws or C2 pars screws. However, anatomic variation may preclude these screw types due to the size of fixation elements or by placing the vertebral artery at risk for injury. Pediatric C2 translaminar screw fixation has low risk of vertebral artery injury and may be used when the anatomy is otherwise unsuitable for C1-C2 transarticular screws or C2 pars screws.MethodsWe retrospectively reviewed a neurosurgical database at UCSF Benioff Children's Hospital Oakland for patients who had undergone a cervical spinal fusion that utilized translaminar screws for occipitocervical instrumentation between 2002 and 2020. We then reviewed the operative records to determine the parameters of C2 screw fixations performed. Demographic and all other relevant clinical data were then recorded.ResultsTwenty-five patients ranging from 2 to 18 years of age underwent O-C fusion, with a total of 43 translaminar screws at C2 placed. Twenty-three patients were fused (92%) after initial surgery with a mean follow-up of 43 months. Two patients, both with Down syndrome, had a nonunion. Another 2 patients had a superficial wound dehiscence that required wound revision. One patient died of unknown cause 7 months after surgery. One patient developed an adjacent-level kyphosis.ConclusionWhen performing occipitocervical instrumentation in the pediatric population, C2 translaminar screw fixation is an effective option to other methods of C2 screw fixation dependent on anatomic feasibility.
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- 2022
13. Validation of the Ruptured Arteriovenous Malformation Grading Scale in a pediatric cohort.
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Garcia, Joseph H, Rutledge, Caleb, Winkler, Ethan A, Carrete, Luis, Morshed, Ramin A, Lu, Alex Y, Saggi, Satvir, Fox, Christine K, Fullerton, Heather J, Kim, Helen, Cooke, Daniel L, Hetts, Steven W, Lawton, Michael T, Gupta, Nalin, and Abla, Adib A
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Pediatric ,Stroke ,Clinical Research ,Brain Disorders ,Humans ,Child ,Retrospective Studies ,Intracranial Arteriovenous Malformations ,Intracranial Hemorrhages ,ROC Curve ,Aneurysm ,Ruptured ,Treatment Outcome ,arteriovenous malformation ,pediatric ,disability ,vascular disease ,vascular disorders ,Paediatrics and Reproductive Medicine ,Neurology & Neurosurgery - Abstract
ObjectivePediatric brain arteriovenous malformations (AVMs) are the leading cause of spontaneous intracranial hemorrhage (SICH) in children. Although the incidence of SICH is low in pediatric populations, such events cause substantial morbidity. The recently created Ruptured Arteriovenous Malformation Grading Scale (RAGS) is proposed as a reliable and novel grading system to specifically serve as a predictor of clinical outcomes in patients following AVM rupture, similar to the Hunt and Hess (HH) grade for ruptured aneurysms. While these data are promising, pediatric patients were notably absent from the original study validating the RAGS. Therefore, correlation of the RAGS score with clinical outcomes following AVM rupture in individuals younger than 18 years of age using the RAGS score is needed. The objective of this study was to validate the RAGS in a cohort of pediatric patients with AVMs who presented with hemorrhage, thereby demonstrating the score's generalizability, and expanding its external validity.MethodsA cohort of children with ruptured AVMs were retrospectively reviewed. Using disability, measured by the modified Rankin Scale (mRS), as the response variable, the area under the receiver operating characteristic curve (AUROC) was calculated for patients based on their RAGS scores for three time periods. The AUROC values were then compared with those generated by two commonly used clinical grading systems, the HH classification and Glasgow Coma Scale.ResultsA total of 81 children who presented with ruptured AVMs were included in the study, with a mean follow-up duration of 4 years. The RAGS score outperformed other clinical grading scales in predicting mRS scores, with AUROC values of 0.81, 0.82, and 0.81 at three distinct follow-up periods.ConclusionsThe RAGS score correlated well with the clinical outcome after AVM rupture in pediatric patients. Additional validation studies across multiple treatment centers are needed to further demonstrate the generalizability of the scoring system.
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- 2022
14. Cholesterol-dependent LXR transcription factor activity represses pronociceptive effects of estrogen in sensory neurons and pain induced by myelin basic protein fragments
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Hullugundi, Swathi K., Dolkas, Jennifer, Chernov, Andrei V., Yaksh, Tony L., Eddinger, Kelly A., Angert, Mila, Catroli, Glaucilene Ferreira, Strongin, Alex Y., Dougherty, Patrick M., Li, Yan, Quehenberger, Oswal, Armando, Aaron, and Shubayev, Veronica I.
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- 2024
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15. Arrhythmia-Induced Cardiomyopathy: JACC State-of-the-Art Review
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Shoureshi, Pouria, Tan, Alex Y., Koneru, Jayanthi, Ellenbogen, Kenneth A., Kaszala, Karoly, and Huizar, Jose F.
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- 2024
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16. Impact of synthesizing surfactant-modified catalytic ceria nanoparticles on the performance and environmental behaviors of coconut oil/diesel-fueled CI engine: An optimization attempt
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George Roy, Roji, Ağbulut, Ümit, Preno Koshy, Chacko, Alex, Y., Sailesh, K.S., Afghan Khan, Sher, Jilte, Ravindra, Linul, Emanoil, and Asif, Mohammad
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- 2024
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17. Mechanisms of regulation of motility of the gastrointestinal tract and the hepatobiliary system under the chronic action of nanocolloids
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Tsymbalyuk, Olga V., Davydovska, Tamara L., Naumenko, Anna M., Voiteshenko, Ivan S., Veselsky, Stanislav P., Nyporko, Alex Y., Pidhaietska, Anastasiia Y., Kozolup, Mariya S., and Skryshevsky, Valeriy A.
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- 2023
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18. Neutrophil extracellular traps induced by chemotherapy inhibit tumor growth in murine models of colorectal cancer
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Li, Yamu, Wu, Sulin, Zhao, Yiqing, Dinh, Trang, Jiang, Dongxu, Selfridge, J. Eva, Myers, George, Wang, Yuxiang, Zhao, Xuan, Tomchuck, Suzanne, Dubyak, George, Lee, Richard T., Estfan, Bassam, Shapiro, Marc, Kamath, Suneel, Mohamed, Amr, Huang, Stanley Ching-Cheng, Huang, Alex Y., Conlon, Ronald, Krishnamurthi, Smitha, Eads, Jennifer, Willis, Joseph E., Khorana, Alok A., Bajor, David, and Wang, Zhenghe
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Tumors -- Analysis -- Models ,Drug therapy, Combination -- Models -- Analysis ,Colorectal cancer -- Analysis -- Models ,Nucleases -- Models -- Growth -- Analysis ,Genetic engineering -- Growth -- Analysis -- Models ,Chemotherapy -- Analysis -- Models ,Proteins -- Models -- Analysis -- Growth ,Cancer -- Chemotherapy ,Thrombin -- Models -- Analysis -- Growth ,Genetically modified organisms -- Analysis -- Growth -- Models ,Company growth ,Health care industry - Abstract
Neutrophil extracellular traps (NETs), a web-like structure of cytosolic and granule proteins assembled on decondensed chromatin, kill pathogens and cause tissue damage in diseases. Whether NETs can kill cancer cells is unexplored. Here, we report that a combination of glutaminase inhibitor CB-839 and 5-FU inhibited the growth of P/K3CA-mutant colorectal cancers (CRCs) in xenograft, syngeneic, and genetically engineered mouse models in part through NETs. Disruption of NETs by either DNase I treatment or depletion of neutrophils in CRCs attenuated the efficacy of the drug combination. Moreover, NETs were present in tumor biopsies from patients treated with the drug combination in a phase II clinical trial. Increased NET levels in tumors were associated with longer progression-free survival. Mechanistically, the drug combination induced the expression of IL-8 preferentially in P/OCA-mutant CRCs to attract neutrophils into the tumors. Further, the drug combination increased the levels of ROS in neutrophils, thereby inducing NETs. Cathepsin G (CTSG), a serine protease localized in NETs, entered CRC cells through the RAGE cell surface protein. The internalized CTSG cleaved 14-3-3 proteins, released BAX, and triggered apoptosis in CRC cells. Thus, our studies illuminate a previously unrecognized mechanism by which chemotherapy-induced NETs kill cancer cells., Introduction Neutrophils are the most abundant leukocytes in peripheral blood and play a vital role in host defenses against pathogens (1). Neutrophils kill pathogens, including bacteria and fungi, by phagocytosis [...]
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- 2024
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19. Alterations of sarcoplasmic reticulum-mediated Ca2+ uptake in a model of premature ventricular contraction (PVC)-induced cardiomyopathy
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Balderas-Villalobos, Jaime, Medina-Contreras, J. M. L., Lynch, Christopher, Kabadi, Rajiv, Ramirez, Rafael J., Tan, Alex Y., Kaszala, Karoly, Samsó, Montserrat, Huizar, Jose F., and Eltit, Jose M.
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- 2023
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20. Political-economic transformation and the reproduction of climate change vulnerability of a high-income city
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Lo, Alex Y., Liu, Shuwen, and Cheung, Lewis T.O.
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- 2024
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21. Shadow Coaching Improves Patient Experience With Care, But Gains Erode Later
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Quigley, Denise D, Elliott, Marc N, Slaughter, Mary E, Burkhart, Q, Chen, Alex Y, Talamantes, Efrain, and Hays, Ron D
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Health Services and Systems ,Health Sciences ,Clinical Research ,Health Services ,Behavioral and Social Science ,Adolescent ,Adult ,Aged ,California ,Child ,Child ,Preschool ,Delivery of Health Care ,Female ,Health Care Surveys ,Health Personnel ,Humans ,Infant ,Male ,Mentoring ,Middle Aged ,Patient Outcome Assessment ,Patient Satisfaction ,Regression Analysis ,Surveys and Questionnaires ,Young Adult ,coaching ,patient experience ,CAHPS ,provider performance ,spline models ,Public Health and Health Services ,Applied Economics ,Health Policy & Services ,Applied economics ,Health services and systems ,Policy and administration - Abstract
BackgroundHealth care organizations strive to improve patient care experiences. Some use one-on-one provider counseling (shadow coaching) to identify and target modifiable provider behaviors.ObjectiveWe examined whether shadow coaching improves patient experience across 44 primary care practices in a large urban Federally Qualified Health Center.Research designSeventy-four providers with "medium" (ie, slightly below average) overall provider ratings received coaching and were compared with 246 uncoached providers. We fit mixed-effects regression models with random effects for provider (level of treatment assignment) and fixed effects for time (linear spline with a knot and "jump" at coaching date), patient characteristics and site indicators. By design, coached providers performed worse at selection; models account for the very small (0.2 point) regression-to-the-mean effects. We assessed differential effects by coach.SubjectsA total of 46,452 patients (from 320 providers) who completed the Clinician and Group Consumer Assessment of Healthcare Providers and Systems (CG-CAHPS) Visit Survey 2.0.MeasuresCAHPS overall provider rating and provider communication composite (scaled 0-100).ResultsProviders not chosen for coaching had a nonsignificant change in performance during the period when selected providers were coached. We observed a statistically significant 2-point (small-to-medium) jump among coached providers after coaching on the CAHPS overall provider rating and provider communication score. However, these gains disappeared after 2.5 years; effects differed by coach.ConclusionsShadow coaching improved providers' overall performance and communication immediately after being coached. Regularly planned shadow coaching "booster" sessions might maintain or even increase the improvement gained in patient experience scores, but research examining additional coaching and optimal implementation is needed.
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- 2021
22. Exploring Pijuayo (Bactris gasipaes) Pulp and Peel Flours as Fat Replacers in Burgers: A Multivariate Study on Physicochemical and Sensory Traits
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Alex Y. Llatas, Heiner Guzmán, Fernando Tello, Roger Ruiz, Jessy Vásquez, Grisel Chiroque, Jhony Mayta-Hancco, Melina L. M. Cruzado-Bravo, Hubert Arteaga, Erick Saldaña, and Juan D. Rios-Mera
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Amazon fruits ,fat substitutes ,physicochemical characteristics ,sensory characteristics ,multivariate statistical analysis ,Chemical technology ,TP1-1185 - Abstract
Meat products are known for their lipid profile rich in saturated fats and cholesterol, and also for the formation of oxidation compounds; therefore, a reduction in animal fat may result in a product less harmful to health. Pijuayo is an Amazon fruit known for its nutritional properties, such as its fiber and lipid content. For these reasons, it is an attractive fruit to replace animal fat in meat products. The present work used pijuayo pulp and peel flours to partially replace animal fat in beef-based burgers at 25% and 50% levels, considering sensory and physicochemical outcomes evaluated by Principal Component Analysis (PCA), Correspondence Analysis (CA) and Multiple Factor Analysis (MFA). Pijuayo flour affected the physicochemical characteristics evaluated by PCA, where the samples with greater fat replacement were characterized by a high carbohydrate content and instrumental yellowness. The minimal fat replacement did not abruptly affect the PCA’s instrumental texture and color, proximal composition, yield properties, and lipid oxidation. The overall liking was greater in the 25% fat reduction treatments, even greater than the control, in which positive sensory attributes for liking were highlighted for those treatments. A small segment of consumers (11% of total consumers) preferred the treatment with greater replacement of fat with pijuayo peel flour, which these consumers tended to characterize as seasoned. However, this treatment had the lowest liking. The MFA showed that the sensory characteristics tender and tasty were strongly correlated with overall liking and were highlighted in the samples of 25% fat reduction, suggesting that the pijuayo improves the tenderness and flavor of reduced-fat burgers. Other inclusion levels between 25% and 50% of fat replacement could be explored, and optimization studies are needed. In addition, the sensory characteristics and flavor-enhancing compounds of the fruit, as well as the nutritional aspects of the inclusion of pijuayo, should be studied, such as the fatty acid profile. These characteristics will be informative to explore pijuayo as a fat replacer at a pilot scale and industrial scale.
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- 2024
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23. Whole-organism 3D quantitative characterization of zebrafish melanin by silver deposition micro-CT.
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Katz, Spencer R, Yakovlev, Maksim A, Vanselow, Daniel J, Ding, Yifu, Lin, Alex Y, Parkinson, Dilworth Y, Wang, Yuxin, Canfield, Victor A, Ang, Khai C, and Cheng, Keith C
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3D imaging ,cell biology ,developmental biology ,melanin ,micro-CT ,pigmentation ,silver staining ,whole-organism phenomics ,zebrafish ,Biomedical Imaging ,Biochemistry and Cell Biology - Abstract
We previously described X-ray histotomography, a high-resolution, non-destructive form of X-ray microtomography (micro-CT) imaging customized for three-dimensional (3D), digital histology, allowing quantitative, volumetric tissue and organismal phenotyping (Ding et al., 2019). Here, we have combined micro-CT with a novel application of ionic silver staining to characterize melanin distribution in whole zebrafish larvae. The resulting images enabled whole-body, computational analyses of regional melanin content and morphology. Normalized micro-CT reconstructions of silver-stained fish consistently reproduced pigment patterns seen by light microscopy, and further allowed direct quantitative comparisons of melanin content across wild-type and mutant samples, including subtle phenotypes not previously noticed. Silver staining of melanin for micro-CT provides proof-of-principle for whole-body, 3D computational phenomic analysis of a specific cell type at cellular resolution, with potential applications in other model organisms and melanocytic neoplasms. Advances such as this in whole-organism, high-resolution phenotyping provide superior context for studying the phenotypic effects of genetic, disease, and environmental variables.
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- 2021
24. Visiting urban green space as a climate-change adaptation strategy: Exploring push factors in a push–pull framework
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Wong, Gwendolyn K.L., Ma, Anson T.H., Cheung, Lewis T.O., Lo, Alex Y., and Jim, C.Y.
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- 2024
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25. Visiting urban green space as a climate-change adaptation strategy: Exploring push factors in a push–pull framework
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Gwendolyn K.L. Wong, Anson T.H. Ma, Lewis T.O. Cheung, Alex Y. Lo, and C.Y. Jim
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Urban green space ,Urban park ,Push and pull factor ,Climate change adaptation ,Summer heat stress ,Thermal perception ,Meteorology. Climatology ,QC851-999 - Abstract
Urban green space (UGS) offers users multiple ecosystem services and amenities. This study investigated whether residents used UGS visitation in summer as a sustainable measure to tackle hot weather and associated climate-change impacts in humid-subtropical Hong Kong. Attributes of the indoor residential environment, seldom examined in park-visitation studies, were evaluated as push factors to visit UGS through a push–pull theoretical framework. A questionnaire survey of 483 respondents targeted urban park users. The results indicated that UGS visit frequency and stay duration were relatively low in hot summer. Ordinal multiple regression showed that indoor living conditions, residence location, living routine, and habit and personal health impacts were significantly correlated with UGS visits. Interdependence between push and pull factors was detected, demonstrating that intrinsic UGS environmental conditions could constrain UGS visits despite the motivations of push factors. The results indicated the need to improve the microclimate-regulating function in UGS. It could be achieved mainly by optimizing the nature-based design to promote UGS as an adaptive measure to combat the thermal stress brought by climate change. The findings yielded hints to shape visiting habits and suggestions to improve UGS management.
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- 2024
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26. Piezo1 facilitates optimal T cell activation during tumor challenge
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muta abiff, Mohammad Alshebremi, Melissa Bonner, Jay T. Myers, Byung-Gyu Kim, Suzanne L. Tomchuck, Alicia Santin, Daniel Kingsley, Sung Hee Choi, and Alex Y. Huang
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Cancer immunology ,Piezo1 ,rhabdomyosarcoma ,T cell mechanobiology ,Immunologic diseases. Allergy ,RC581-607 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
ABSTRACTFunctional effector T cells in the tumor microenvironment (TME) are critical for successful anti-tumor responses. T cell anti-tumor function is dependent on their ability to differentiate from a naïve state, infiltrate into the tumor site, and exert cytotoxic functions. The factors dictating whether a particular T cell can successfully undergo these processes during tumor challenge are not yet completely understood. Piezo1 is a mechanosensitive cation channel with high expression on both CD4+ and CD8+ T cells. Previous studies have demonstrated that Piezo1 optimizes T cell activation and restrains the CD4+ regulatory T cell (Treg) pool in vitro and under inflammatory conditions in vivo. However, little is known about the role Piezo1 plays on CD4+ and CD8+ T cells in cancer. We hypothesized that disruption of Piezo1 on T cells impairs anti-tumor immunity in vivo by hindering inflammatory T cell responses. We challenged mice with T cell Piezo1 deletion (P1KO) with tumor models dependent on T cells for immune rejection. P1KO mice had the more aggressive tumors, higher tumor growth rates and were unresponsive to immune-mediated therapeutic interventions. We observed a decreased CD4:CD8 ratio in both the secondary lymphoid organs and TME of P1KO mice that correlated inversely with tumor size. Poor CD4+ helper T cell responses underpinned the immunodeficient phenotype of P1KO mice. Wild type CD8+ T cells are sub-optimally activated in vivo with P1KO CD4+ T cells, taking on a CD25loPD-1hi phenotype. Together, our results suggest that Piezo1 optimizes T cell activation in the context of a tumor response.
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- 2023
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27. An HIV Diagnostic Testing Algorithm Using the cobas HIV-1/HIV-2 Qualitative Assay for HIV Type Differentiation and Confirmation
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Duncan, Dana, Duncan, John, Kramer, Bastian, Nilsson, Alex Y, Haile, Betiel, Butcher, Ann, Chugh, Shikha, Baum, Paul, Aldrovandi, Grace M, Young, Stephen, Avery, Ann K, Tashima, Karen, Valsamakis, Alexandra, Yao, Joseph D, Chang, Ming, and Coombs, Robert W
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Medical Microbiology ,Biomedical and Clinical Sciences ,Immunology ,Sexually Transmitted Infections ,Infectious Diseases ,HIV/AIDS ,Infection ,Good Health and Well Being ,Algorithms ,Diagnostic Tests ,Routine ,HIV Infections ,HIV-1 ,HIV-2 ,Humans ,RNA ,Viral ,Sensitivity and Specificity ,diagnosis ,PCR ,testing algorithm ,Biological Sciences ,Agricultural and Veterinary Sciences ,Medical and Health Sciences ,Microbiology ,Clinical sciences ,Medical microbiology - Abstract
Human immunodeficiency virus types 1 and 2 (HIV-1 and HIV-2) diagnostic testing algorithms recommended by the Centers for Disease Control involve up to three tests and rely mostly on detection of viral antigen and host antibody responses. HIV-1 p24 antigen/HIV-1/HIV-2 antibody-reactive specimens are confirmed with an immunochromatographic HIV-1/HIV-2 antibody differentiation assay, and negative or indeterminate results from the differentiation assay are resolved by an HIV-1-specific nucleic acid amplification test (NAT). The performance of a proposed alternative algorithm using the cobas HIV-1/HIV-2 qualitative NAT as the differentiation assay was evaluated in subjects known to be infected with HIV-1 (n = 876) or HIV-2 (n = 139), at low (n = 6,017) or high (n = 1,020) risk of HIV-1 infection, or at high-risk for HIV-2 infection (n = 498) (study A). The performance of the cobas HIV-1/HIV-2 qualitative test was also evaluated by comparison to an HIV-1 or HIV-2 alternative NAT (study B). The HIV-1 and HIV-2 overall percent agreements (OPA) in study A ranged from 95% to 100% in all groups. The positive percent agreements (PPA) for HIV-1 and HIV-2 were 100% (876/876) and 99.4% (167/168), respectively, for known positive groups. The negative percent agreement in the HIV low-risk group was 100% for both HIV-1 and HIV-2. In study B, the HIV-1 and HIV-2 OPA ranged from 99% to 100% in all groups evaluated (n = 183 to 1,030), and the PPA for HIV-1 and HIV-2 were 100% and 99.5%, respectively, for known positive groups. The cobas HIV-1/HIV-2 qualitative assay can discriminate between HIV-1 and HIV-2 based on HIV RNA and can be included in an alternative diagnostic algorithm for HIV.
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- 2021
28. Mechanisms of regulation of motility of the gastrointestinal tract and the hepatobiliary system under the chronic action of nanocolloids
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Olga V. Tsymbalyuk, Tamara L. Davydovska, Anna M. Naumenko, Ivan S. Voiteshenko, Stanislav P. Veselsky, Alex Y. Nyporko, Anastasiia Y. Pidhaietska, Mariya S. Kozolup, and Valeriy A. Skryshevsky
- Subjects
Medicine ,Science - Abstract
Abstract Modern cutting edge technologies of chemical synthesis enable the production of unique nanostructures with excess energy and high reactivity. Uncontrolled use of such materials in the food industry and pharmacology entail a risk for the development of a nanotoxicity crisis. Using the methods of tensometry, mechanokinetic analysis, biochemical methods, and bioinformatics, the current study showed that chronic (for six months) intragastrical burdening of rats with aqueous nanocolloids (AN) ZnO and TiO2 caused violations of the pacemaker-dependent mechanisms of regulation of spontaneous and neurotransmitter-induced contractions of the gastrointestinal tract (GIT) smooth muscles (SMs), and transformed the contraction efficiency indices (AU, in Alexandria units). Under the same conditions, the fundamental principle of distribution of physiologically relevant differences in the numeric values of the mechanokinetic parameters of spontaneous SM contractions between different parts of GIT is violated, which can potentially cause its pathological changes. Using molecular docking, typical bonds in the interfaces of the interaction of these nanomaterials with myosin II, a component of the contractile apparatus of smooth muscle cells (SMC) were investigated. In this connection, the study addressed the question of possible competitive relations between ZnO and TiO2 nanoparticles and actin molecules for binding sites on the myosin II actin-interaction interface. In addition, using biochemical methods, it was shown that chronic long-term exposure to nanocolloids causes changes in the primary active ion transport systems of cell plasma membranes, the activity of marker liver enzymes and disrupts the blood plasma lipid profile, which indicates the hepatotoxic effect of these nanocolloids.
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- 2023
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29. Left ventricular remodeling in premature ventricular contraction–induced cardiomyopathy: Effect of coupling intervals and atrioventricular dissociation
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Shoureshi, Pouria, Kabadi, Rajiv, James, Nicholas, Torrado, Juan F., Airapetov, Sergei, Hundley, William, Kaszala, Karoly, Ellenbogen, Kenneth A., Tan, Alex Y., and Huizar, Jose F.
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- 2023
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30. Racial Disparities in Employment Status After Moderate/Severe Traumatic Brain Injuries in Southeast Michigan
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Bah, Momodou G., Chen, Alex Y., Hart, Kristina, Vahidy, Zara, Coles, Jasmine, Mahas, Rachel, and Eden, Sonia V.
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- 2023
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31. Impact of Circulating N-Acylethanolamine Levels with Clinical and Laboratory End Points in Hemodialysis Patients
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Pai, Alex Y, Wenziger, Cachet, Streja, Elani, Argueta, Donovan A, DiPatrizio, Nicholas V, Rhee, Connie M, Vaziri, Nosratola D, Kalantar-Zadeh, Kamyar, Piomelli, Daniele, and Moradi, Hamid
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Biomedical and Clinical Sciences ,Clinical Sciences ,Clinical Research ,Kidney Disease ,Nutrition ,Bioengineering ,2.1 Biological and endogenous factors ,Aetiology ,Good Health and Well Being ,Adult ,Aged ,Amides ,Endocannabinoids ,Ethanolamines ,Female ,Humans ,Kidney Failure ,Chronic ,Male ,Middle Aged ,Oleic Acids ,Palmitic Acids ,Renal Dialysis ,ESRD ,Maintenance hemodialysis ,Mortality ,Endocannabinoid system ,Oleoylethanolamide ,Palmitoylethanolamide ,Urology & Nephrology ,Clinical sciences - Abstract
BackgroundPatients with ESRD on maintenance hemodialysis (MHD) are particularly susceptible to dysregulation of energy metabolism, which may manifest as protein energy wasting and cachexia. In recent years, the endocannabinoid system has been shown to play an important role in energy metabolism with potential relevance in ESRD. N-acylethanolamines are a class of fatty acid amides which include the major endocannabinoid ligand, anandamide, and the endogenous peroxisome proliferator-activated receptor-α agonists, oleoylethanolamide (OEA) and palmitoylethanolamide (PEA).MethodsSerum concentrations of OEA and PEA were measured in MHD patients and their correlations with various clinical/laboratory indices were examined. Secondarily, we evaluated the association of circulating PEA and OEA levels with 12-month all-cause mortality.ResultsBoth serum OEA and PEA levels positively correlated with high-density lipoprotein-cholesterol levels and negatively correlated with body fat and body anthropometric measures. Serum OEA levels correlated positively with serum interleukin-6 (IL-6) (rho = 0.19; p = 0.004). Serum PEA and IL-6 showed a similar but nonsignificant trend (rho = 0.12; p = 0.07). Restricted cubic spline analyses showed that increasing serum OEA and PEA both trended toward higher mortality risk, and these associations were statistically significant for PEA (PEA ≥4.7 pmol/mL; reference: PEA
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- 2021
32. Human engineered cardiac tissue model of hypertrophic cardiomyopathy recapitulates key hallmarks of the disease and the effect of chronic mavacamten treatment
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Kai Wang, Brian J. Schriver, Roozbeh Aschar-Sobbi, Alex Y. Yi, Nicole T. Feric, and Michael P. Graziano
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hypertrophic cardiomyopathy ,human induced pluripotent stem cells derived cardiomyocyte ,engineered cardiac tissue ,disease model ,mavacamten ,Biotechnology ,TP248.13-248.65 - Abstract
Introduction: The development of patient-specific induced pluripotent stem cell-derived cardiomyocytes (iPSC-CMs) offers an opportunity to study genotype-phenotype correlation of hypertrophic cardiomyopathy (HCM), one of the most common inherited cardiac diseases. However, immaturity of the iPSC-CMs and the lack of a multicellular composition pose concerns over its faithfulness in disease modeling and its utility in developing mechanism-specific treatment.Methods: The Biowire platform was used to generate 3D engineered cardiac tissues (ECTs) using HCM patient-derived iPSC-CMs carrying a β-myosin mutation (MYH7-R403Q) and its isogenic control (WT), withal ECTs contained healthy human cardiac fibroblasts. ECTs were subjected to electro-mechanical maturation for 6 weeks before being used in HCM phenotype studies.Results: Both WT and R403Q ECTs exhibited mature cardiac phenotypes, including a lack of automaticity and a ventricular-like action potential (AP) with a resting membrane potential < −75 mV. Compared to WT, R403Q ECTs demonstrated many HCM-associated pathological changes including increased tissue size and cell volume, shortened sarcomere length and disorganized sarcomere structure. In functional assays, R403Q ECTs showed increased twitch amplitude, slower contractile kinetics, a less pronounced force-frequency relationship, a smaller post-rest potentiation, prolonged AP durations, and slower Ca2+ transient decay time. Finally, we observed downregulation of calcium handling genes and upregulation of NPPB in R403Q vs. WT ECTs. In an HCM phenotype prevention experiment, ECTs were treated for 5-weeks with 250 nM mavacamten or a vehicle control. We found that chronic mavacamten treatment of R403Q ECTs: (i) shortened relaxation time, (ii) reduced APD90 prolongation, (iii) upregulated ADRB2, ATP2A2, RYR2, and CACNA1C, (iv) decreased B-type natriuretic peptide (BNP) mRNA and protein expression levels, and (v) increased sarcomere length and reduced sarcomere disarray.Discussion: Taken together, we demonstrated R403Q ECTs generated in the Biowire platform recapitulated many cardiac hypertrophy phenotypes and that chronic mavacamten treatment prevented much of the pathology. This demonstrates that the Biowire ECTs are well-suited to phenotypic-based drug discovery in a human-relevant disease model.
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- 2023
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33. MYO10 regulates genome stability and cancer inflammation through mediating mitosis
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Mayca Pozo, Franklin, Geng, Xinran, Miyagi, Masaru, Amin, Amanda L., Huang, Alex Y., and Zhang, Youwei
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- 2023
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34. Effect of poly (ethylene glycol) on 3D printed PLA/PEG blend: A study of physical, mechanical characterization and printability assessment
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Kumar, Ritesh, Alex, Y., Nayak, Biswabaibhaba, and Mohanty, Smita
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- 2023
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35. A myelin basic protein fragment induces sexually dimorphic transcriptome signatures of neuropathic pain in mice
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Chernov, Andrei V, Hullugundi, Swathi K, Eddinger, Kelly A, Dolkas, Jennifer, Remacle, Albert G, Angert, Mila, James, Brian P, Yaksh, Tony L, Strongin, Alex Y, and Shubayev, Veronica I
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Biomedical and Clinical Sciences ,Neurosciences ,Clinical Sciences ,Estrogen ,Peripheral Neuropathy ,Pain Research ,Neurodegenerative ,Chronic Pain ,2.1 Biological and endogenous factors ,Aetiology ,Neurological ,Animals ,Calcium Signaling ,Female ,Ganglia ,Spinal ,Inositol 1 ,4 ,5-Trisphosphate Receptors ,Male ,Mice ,Myelin Basic Protein ,Neuralgia ,Peptide Fragments ,RNA-Seq ,Sciatic Nerve ,Sex Characteristics ,Transcriptome ,Type C Phospholipases ,sexual dimorphism ,chronic pain ,myelin basic protein ,neuropathic pain ,mechanical allodynia ,myelin ,RNA-seq ,MBP(84-104) ,transcriptomics ,systems biology ,pain ,neuroinflammation ,dorsal root ganglia ,analgesia ,Chemical Sciences ,Biological Sciences ,Medical and Health Sciences ,Biochemistry & Molecular Biology ,Biological sciences ,Biomedical and clinical sciences ,Chemical sciences - Abstract
In the peripheral nerve, mechanosensitive axons are insulated by myelin, a multilamellar membrane formed by Schwann cells. Here, we offer first evidence that a myelin degradation product induces mechanical hypersensitivity and global transcriptomics changes in a sex-specific manner. Focusing on downstream signaling events of the functionally active 84-104 myelin basic protein (MBP(84-104)) fragment released after nerve injury, we demonstrate that exposing the sciatic nerve to MBP(84-104) via endoneurial injection produces robust mechanical hypersensitivity in female, but not in male, mice. RNA-seq and systems biology analysis revealed a striking sexual dimorphism in molecular signatures of the dorsal root ganglia (DRG) and spinal cord response, not observed at the nerve injection site. Mechanistically, intra-sciatic MBP(84-104) induced phospholipase C (PLC)-driven (females) and phosphoinositide 3-kinase-driven (males) phospholipid metabolism (tier 1). PLC/inositol trisphosphate receptor (IP3R) and estrogen receptor co-regulation in spinal cord yielded Ca2+-dependent nociceptive signaling induction in females that was suppressed in males (tier 2). IP3R inactivation by intrathecal xestospongin C attenuated the female-specific hypersensitivity induced by MBP(84-104). According to sustained sensitization in tiers 1 and 2, T cell-related signaling spreads to the DRG and spinal cord in females, but remains localized to the sciatic nerve in males (tier 3). These results are consistent with our previous finding that MBP(84-104)-induced pain is T cell-dependent. In summary, an autoantigenic peptide endogenously released in nerve injury triggers multisite, sex-specific transcriptome changes, leading to neuropathic pain only in female mice. MBP(84-104) acts through sustained co-activation of metabolic, estrogen receptor-mediated nociceptive, and autoimmune signaling programs.
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- 2020
36. A near-infrared AIE fluorescent probe for myelin imaging : From sciatic nerve to the optically cleared brain tissue in 3D
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Wu, Ming-Yu, Wong, Alex Y. H., Leung, Jong-Kai, Kam, Chuen, Wu, Kenneth Lap-Kei, Chan, Ying-Shing, Liu, Kai, Ip, Nancy Y., and Chen, Sijie
- Published
- 2021
37. Improving Dysplasia Detection in Barrett's Esophagus
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Holzwanger, Erik A., Liu, Alex Y., and Iyer, Prasad G.
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- 2023
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38. Validation and adjustment of modified Erasmus GBS outcome score in Bangladesh
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Nowshin Papri, Alex Y. Doets, Quazi D. Mohammad, Hubert P. Endtz, Hester F. Lingsma, Bart C. Jacobs, and Zhahirul Islam
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Objective We have assessed and improved the performance of the modified Erasmus GBS Outcome Score (mEGOS) among patients with Guillain‐Barré syndrome (GBS) from Bangladesh. Methods Validation cohort consisted of patients with GBS from two prospective cohort studies in Bangladesh. Poor outcome was defined as being unable to walk independently at week 4 and week 26. We excluded patients able to walk independently, patients who died within the first week, or with missing GBS disability scores. Performance of mEGOS at entry and week 1 was determined based on the discriminative ability (ability to differentiate between patients able and unable to walk independently; measured using the area under the receiver operating characteristic curves [AUC]) and calibration (observed probability versus predicted probability of poor outcome). Results A total of 506 patients aged ≥6‐year‐old were enrolled, with 471 and 366 patients included in mEGOS validation analysis at entry and week 1, respectively. The AUC values for predicting poor outcome (1) at week 4 were 0.69 (mEGOS entry) and 0.78 (mEGOS week 1) and (2) at week 26 were 0.67 (mEGOS entry) and 0.70 (mEGOS week 1). Mean predicted probabilities of poor outcome corresponded with observed outcomes except for the probability of poor outcome at week 4 which was overestimated by mEGOS week 1. This was resolved by updating the model intercept. Interpretation The mEGOS shows valid outcome predictions among patients with GBS from Bangladesh. The model can aid the identification of patients at high risk of poor outcome and help to adequately allocate healthcare resources in low‐resource settings.
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- 2022
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39. MYO10 regulates genome stability and cancer inflammation through mediating mitosis
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Franklin Mayca Pozo, Xinran Geng, Masaru Miyagi, Amanda L. Amin, Alex Y. Huang, and Youwei Zhang
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CP: Molecular biology ,CP: Cancer ,Biology (General) ,QH301-705.5 - Abstract
Summary: Genomic instability can promote inflammation and tumor development. Previous research revealed an unexpected layer of regulation of genomic instability by a cytoplasmic protein MYO10; however, the underlying mechanism remained unclear. Here, we report a protein stability-mediated mitotic regulation of MYO10 in controlling genome stability. We characterized a degron motif and phosphorylation residues in the degron that mediate β-TrCP1-dependent MYO10 degradation. The level of phosphorylated MYO10 protein transiently increases during mitosis, which is accompanied by a spatiotemporal cellular localization change first accumulating at the centrosome then at the midbody. Depletion of MYO10 or expression of MYO10 degron mutants, including those found in cancer patients, disrupts mitosis, increases genomic instability and inflammation, and promotes tumor growth; however, they also increase the sensitivity of cancer cells to Taxol. Our studies demonstrate a critical role of MYO10 in mitosis progression, through which it regulates genome stability, cancer growth, and cellular response to mitotic toxins.
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- 2023
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40. Exploring genetic interaction manifolds constructed from rich single-cell phenotypes
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Norman, Thomas M, Horlbeck, Max A, Replogle, Joseph M, Ge, Alex Y, Xu, Albert, Jost, Marco, Gilbert, Luke A, and Weissman, Jonathan S
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Biological Sciences ,Bioinformatics and Computational Biology ,Human Genome ,Genetics ,Aetiology ,2.1 Biological and endogenous factors ,Apoptosis ,CRISPR-Cas Systems ,Calcium-Binding Proteins ,Cell Cycle Checkpoints ,Cell Line ,Tumor ,Epistasis ,Genetic ,Erythroid Cells ,Erythropoiesis ,Female ,Gene Expression Profiling ,Granulocytes ,Humans ,Microfilament Proteins ,Proto-Oncogene Proteins c-cbl ,Sequence Analysis ,RNA ,Single-Cell Analysis ,General Science & Technology - Abstract
How cellular and organismal complexity emerges from combinatorial expression of genes is a central question in biology. High-content phenotyping approaches such as Perturb-seq (single-cell RNA-sequencing pooled CRISPR screens) present an opportunity for exploring such genetic interactions (GIs) at scale. Here, we present an analytical framework for interpreting high-dimensional landscapes of cell states (manifolds) constructed from transcriptional phenotypes. We applied this approach to Perturb-seq profiling of strong GIs mined from a growth-based, gain-of-function GI map. Exploration of this manifold enabled ordering of regulatory pathways, principled classification of GIs (e.g., identifying suppressors), and mechanistic elucidation of synergistic interactions, including an unexpected synergy between CBL and CNN1 driving erythroid differentiation. Finally, we applied recommender system machine learning to predict interactions, facilitating exploration of vastly larger GI manifolds.
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- 2019
41. KRASG12C inhibition produces a driver-limited state revealing collateral dependencies
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Lou, Kevin, Steri, Veronica, Ge, Alex Y, Hwang, Y Christina, Yogodzinski, Christopher H, Shkedi, Arielle R, Choi, Alex LM, Mitchell, Dominique C, Swaney, Danielle L, Hann, Byron, Gordan, John D, Shokat, Kevan M, and Gilbert, Luke A
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Biotechnology ,Genetics ,Cancer ,Rare Diseases ,Digestive Diseases ,Lung ,2.1 Biological and endogenous factors ,Aetiology ,Good Health and Well Being ,Animals ,Antineoplastic Agents ,CRISPR-Cas Systems ,Cell Line ,Tumor ,Cell Proliferation ,Cysteine ,Female ,Genomics ,HEK293 Cells ,Humans ,Lung Neoplasms ,Mice ,Mice ,Nude ,Mutation ,Neoplasm Transplantation ,Oncogenes ,Pancreatic Neoplasms ,Protein Binding ,Proteomics ,Proto-Oncogene Proteins p21(ras) ,Sequence Analysis ,RNA ,Signal Transduction ,Biochemistry and Cell Biology - Abstract
Inhibitors targeting KRASG12C, a mutant form of the guanosine triphosphatase (GTPase) KRAS, are a promising new class of oncogene-specific therapeutics for the treatment of tumors driven by the mutant protein. These inhibitors react with the mutant cysteine residue by binding covalently to the switch-II pocket (S-IIP) that is present only in the inactive guanosine diphosphate (GDP)-bound form of KRASG12C, sparing the wild-type protein. We used a genome-scale CRISPR interference (CRISPRi) functional genomics platform to systematically identify genetic interactions with a KRASG12C inhibitor in cellular models of KRASG12C mutant lung and pancreatic cancer. Our data revealed genes that were selectively essential in this oncogenic driver-limited cell state, meaning that their loss enhanced cellular susceptibility to direct KRASG12C inhibition. We termed such genes "collateral dependencies" (CDs) and identified two classes of combination therapies targeting these CDs that increased KRASG12C target engagement or blocked residual survival pathways in cells and in vivo. From our findings, we propose a framework for assessing genetic dependencies induced by oncogene inhibition.
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- 2019
42. Cerebral infarction following bee stings: Case report and literature review
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Yang Shuiquan, Wellington Jack, Chen Juanmei, Regenhardt Robert W., Chen Alex Y., Li Guilan, Yan Zile, Fu Pingzhong, Hu Zhaohui, and Chen Yimin
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bee stings ,cerebral infarction ,thrombectomy ,case report ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
To date, only 25 cases of cerebral infarction following a bee or wasp sting have been reported. Due to its rarity, undefined pathogenesis, and unique clinical features, we report a case of a 62-year-old man with progressive cerebral infarction following bee stings, possibly related to vasospasm. Furthermore, we review relevant literature on stroke following bee or wasp stings.
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- 2022
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43. Coordinated histone modifications and chromatin reorganization in a single cell revealed by FRET biosensors
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Peng, Qin, Lu, Shaoying, Shi, Yuxin, Pan, Yijia, Limsakul, Praopim, Chernov, Andrei V, Qiu, Juhui, Chai, Xiaoqi, Shi, Yiwen, Wang, Pengzhi, Ji, Yanmin, Li, Yi-Shuan J, Strongin, Alex Y, Verkhusha, Vladislav V, Izpisua Belmonte, Juan Carlos, Ren, Bing, Wang, Yuanliang, Chien, Shu, and Wang, Yingxiao
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Genetics ,Underpinning research ,1.1 Normal biological development and functioning ,Generic health relevance ,Bacterial Proteins ,Biosensing Techniques ,Chromatin Assembly and Disassembly ,Fluorescence Resonance Energy Transfer ,Green Fluorescent Proteins ,HEK293 Cells ,Heterochromatin ,Histone Code ,Histones ,Humans ,Luminescent Proteins ,Mitosis ,Models ,Biological ,Single-Cell Analysis ,histone modifications ,chromatin reorganization ,FRET biosensors - Abstract
The dramatic reorganization of chromatin during mitosis is perhaps one of the most fundamental of all cell processes. It remains unclear how epigenetic histone modifications, despite their crucial roles in regulating chromatin architectures, are dynamically coordinated with chromatin reorganization in controlling this process. We have developed and characterized biosensors with high sensitivity and specificity based on fluorescence resonance energy transfer (FRET). These biosensors were incorporated into nucleosomes to visualize histone H3 Lys-9 trimethylation (H3K9me3) and histone H3 Ser-10 phosphorylation (H3S10p) simultaneously in the same live cell. We observed an anticorrelated coupling in time between H3K9me3 and H3S10p in a single live cell during mitosis. A transient increase of H3S10p during mitosis is accompanied by a decrease of H3K9me3 that recovers before the restoration of H3S10p upon mitotic exit. We further showed that H3S10p is causatively critical for the decrease of H3K9me3 and the consequent reduction of heterochromatin structure, leading to the subsequent global chromatin reorganization and nuclear envelope dissolution as a cell enters mitosis. These results suggest a tight coupling of H3S10p and H3K9me3 dynamics in the regulation of heterochromatin dissolution before a global chromatin reorganization during mitosis.
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- 2018
44. Acute- and late-phase matrix metalloproteinase (MMP)-9 activity is comparable in female and male rats after peripheral nerve injury
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Remacle, Albert G, Hullugundi, Swathi K, Dolkas, Jennifer, Angert, Mila, Chernov, Andrei V, Strongin, Alex Y, and Shubayev, Veronica I
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Biomedical and Clinical Sciences ,Neurosciences ,Clinical Sciences ,Peripheral Neuropathy ,Physical Injury - Accidents and Adverse Effects ,Neurodegenerative ,Animals ,Disease Models ,Animal ,Female ,Male ,Matrix Metalloproteinase 9 ,RNA ,Messenger ,Rats ,S100 Proteins ,Sciatic Neuropathy ,Sex Characteristics ,Time Factors ,Tissue Inhibitor of Metalloproteinase-1 ,Immunology ,Neurology & Neurosurgery - Abstract
BackgroundIn the peripheral nerve, pro-inflammatory matrix metalloproteinase (MMP)-9 performs essential functions in the acute response to injury. Whether MMP-9 activity contributes to late-phase injury or whether MMP-9 expression or activity after nerve injury is sexually dimorphic remains unknown.MethodsPatterns of MMP-9 expression, activity and excretion were assessed in a model of painful peripheral neuropathy, sciatic nerve chronic constriction injury (CCI), in female and male rats. Real-time Taqman RT-PCR for MMP-9 and its endogenous inhibitor, tissue inhibitor of metalloproteinase-1 (TIMP-1) of nerve samples over a 2-month time course of CCI was followed by gelatin zymography of crude nerve extracts and purified MMP-9 from the extracts using gelatin Sepharose-beads. MMP excretion was determined using protease activity assay of urine in female and male rats with CCI.ResultsThe initial upsurge in nerve MMP-9 expression at day 1 post-CCI was superseded more than 100-fold at day 28 post-CCI. The high level of MMP-9 expression in late-phase nerve injury was accompanied by the reduction in TIMP-1 level. The absence of MMP-9 in the normal nerve and the presence of multiple MMP-9 species (the proenzyme, mature enzyme, homodimers, and heterodimers) was observed at day 1 and day 28 post-CCI. The MMP-9 proenzyme and mature enzyme species dominated in the early- and late-phase nerve injury, consistent with the high and low level of TIMP-1 expression, respectively. The elevated nerve MMP-9 levels corresponded to the elevated urinary MMP excretion post-CCI. All of these findings were comparable in female and male rodents.ConclusionThe present study offers the first evidence for the excessive, uninhibited proteolytic MMP-9 activity during late-phase painful peripheral neuropathy and suggests that the pattern of MMP-9 expression, activity, and excretion after peripheral nerve injury is universal in both sexes.
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- 2018
45. Space poverty driving heat stress vulnerability and the adaptive strategy of visiting urban parks
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Lo, Alex Y., Jim, C.Y., Cheung, Pui Kwan, Wong, Gwendolyn K.L., and Cheung, Lewis T.O.
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- 2022
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46. A microphysiological model of human trophoblast invasion during implantation
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Park, Ju Young, Mani, Sneha, Clair, Geremy, Olson, Heather M., Paurus, Vanessa L., Ansong, Charles K., Blundell, Cassidy, Young, Rachel, Kanter, Jessica, Gordon, Scott, Yi, Alex Y., Mainigi, Monica, and Huh, Dan Dongeun
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- 2022
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47. A microphysiological model of human trophoblast invasion during implantation
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Ju Young Park, Sneha Mani, Geremy Clair, Heather M. Olson, Vanessa L. Paurus, Charles K. Ansong, Cassidy Blundell, Rachel Young, Jessica Kanter, Scott Gordon, Alex Y. Yi, Monica Mainigi, and Dan Dongeun Huh
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Science - Abstract
Normal and abnormal pregnancy is challenging to study and involves complex interactions between maternal and fetal cells. Here the authors present an implantation-on-a-chip device capable of modeling trophoblast invasion, a process critical to the establishment of pregnancy.
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- 2022
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48. Nylon 12 composite optimization: Investigating influence of ceramic functional fillers on FFF 3D printing performance and rheological properties.
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Divakaran, Nidhin, Alex, Y., Ajay Kumar, P. V., Das, Jyoti Prakash, Mohapatra, Agneyarka, and Mohanty, Smita
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CONDUCTING polymer composites , *THREE-dimensional printing , *RHEOLOGY , *ZINC oxide , *TENSILE strength - Abstract
Fused Filament Fabrication (FFF) is a promising 3D printing technology for industrial and technological applications due to its cost‐effective ability to fabricate large, complex objects from thermoplastics. Nylon 12, a versatile thermoplastic, is widely used for functional prototyping and has significant potential for end‐user applications. Our research focuses on enhancing the mechanical and thermal properties of Nylon 12 by developing composites with ceramic fillers such as zinc oxide (ZnO) and alumina (Al2O3). This is achieved by melt mixing the fillers into the Nylon 12 polymer matrix and preparing filaments using a filament extruder. The optimal concentration of these fillers was determined by analyzing tensile strength of the polymer composites, while DSC was employed for thermal analysis. Additionally, rheological studies were conducted to assess the impact of the fillers on the viscoelastic properties and flow characteristics of Nylon 12. The Carreau‐Yasuda model was employed to study the complex viscosity of the materials. Our findings indicate that the addition of functional fillers enhances the shear thinning behavior of Nylon 12, improving material flow through the printer nozzle. This optimization leads to 3D printed structures with minimal dimensional inaccuracies, ensuring high‐quality prints suitable for commercial applications. Highlights: Different functional fillers reinforced Nylon 12 composites‐based filaments for FDM 3D printing applications are manufactured.Different wt.% of functional fillers are added into Nylon 12 polymer matrix via melt mixing, and their filaments are prepared by filament extruder.Rheological studies of polymer composites were conducted to examine the influence of functional fillers in flow characteristics of polymer.The presence of functional fillers enhanced shear thinning behavior of polymer and develops maximum printable viscosity for extrusion‐based 3D printing. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
49. Lessons Learned: Large-Scale Perfused Cadaver Training in Three Different Curricular Environments.
- Author
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Koo, Alex Y, Rodgers, David K, Hohman, Marc H, Muise, Jason R, Couperus, Kyle S, and Phelps, Jillian F
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ARTERIAL catheterization , *EXERCISE therapy , *MEDICAL cadavers , *OPERATIVE surgery , *OPERATING rooms - Abstract
Background Perfused cadavers are viable training models for operating room surgical skills, increasing fidelity of vascular anatomy, dissection, and tissue handling. In addition, perfused cadavers may have benefits in military medical training environments with a focus on hemorrhage control and vascular access. Objectives We created a large-scale training exercise with perfused cadavers in three different environments and aim to share the curricular design and feedback from the exercise. Methods We conducted a 4-day simulation training exercise with 13 perfused cadavers in 3 different environments: hospital environment, the austere echelons of care environment, and a controlled-settings tent for hemorrhage control and needle decompression training. Through an anonymous online survey and an after-action review (AAR), we elicited feedback on advantages, disadvantages, costs, and comparison to models of porcine and fresh cadavers for procedures and existing courses. Results A total of 324 participants were trained with 13 perfused cadavers for over 4 days from a variety of specialties and on different procedures and surgical skills. Based on 130 respondents to the survey and the AAR, perfused cadavers were rated to have realistic arterial bleeding and bleeding control training. In addition, perfused cadavers provided increased realism and fidelity for surgical skills. There were disadvantages of logistical requirements, cleanup, costs, and mobility. Conclusion Perfused cadavers can be implemented effectively for hemorrhage control training, surgical and procedure skills, and even exercises in austere environments, but require significant logistical and planning considerations. The training value is maximized with a progressive curriculum from hemorrhage control iterations to more invasive surgical procedures, such as thoracotomy and exploratory laparotomy. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
50. Pijuayo (Bactris gasipaes) Pulp and Peel Flours as Partial Substitutes for Animal Fat in Burgers: Physicochemical Properties
- Author
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Heiner Guzmán, Alex Y. Llatas, Hubert Arteaga, Erick Saldaña, Fernando Tello, and Juan D. Rios-Mera
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animal fat ,Amazon fruits ,instrumental texture ,TBARS ,Plant ecology ,QK900-989 ,Animal biochemistry ,QP501-801 ,Biology (General) ,QH301-705.5 - Abstract
This study aimed to evaluate the incorporation of peach palm (PP) pulp and peel flours as substitutes for animal fat (25 and 50% substitution) in beef-based burgers. Incorporation of PP flours reduced hardness, springiness, cohesiveness, chewiness, fat, cooking losses, and diameter reduction. Burgers made with PP peel flour stood out for having low values of lipid oxidation in the two levels of fat substitution (0.14–0.23 malondialdehyde/kg) (p < 0.05). PP fruit has the potential to be utilized as a new ingredient in burgers, but future studies are needed regarding detailed sensory trials and consumer acceptance.
- Published
- 2023
- Full Text
- View/download PDF
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