747 results on '"Acquadro, A."'
Search Results
2. The Dark Side of the pollen: BSA-seq identified genomic regions linked to male sterility in globe artichoke
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Martina, Matteo, Zayas, Aldana, Portis, Ezio, Di Nardo, Giovanna, Polli, Maria Francesca, Comino, Cinzia, Gilardi, Gianfranco, Martin, Eugenia, and Acquadro, Alberto
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- 2024
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3. Exploring differences in the utilization of the emergency department between migrant and non-migrant populations: a systematic review
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Acquadro-Pacera, Giulia, Valente, Martina, Facci, Giulia, Molla Kiros, Bereket, Della Corte, Francesco, Barone-Adesi, Francesco, Ragazzoni, Luca, and Trentin, Monica
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- 2024
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4. Does heatwaves/above-average temperature increase interpersonal violent behavior? A scoping review
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Daniela ACQUADRO MARAN, Gaia DIBIASE, Sofia FILIPPETTI, Riccardo SANDRETTO, Antonella VARETTO, Claudio Giovanni CORTESE, and Elisabetta CARRARO
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interpersonal violence ,high temperature ,violent behavior ,Medicine (General) ,R5-920 ,Social sciences (General) ,H1-99 - Abstract
Introduction: This scoping review aimed to analyze the literature on the relationship between heatwaves or above-average temperature and interpersonal violence. Because of the nature of third-party violent behavior and our focus on the most direct effects of abnormal temperature on it, we excluded self-directed and collective violence, such as social conflicts. Methods: This review was conducted in accordance with the JBI methods outlined for scoping reviews and in line with the Preferred Reporting Items for Systematic Reviews (PRISMA-ScR). The publication period under consideration was 2012-2024 and was conducted on Scopus, PubMed, Web of Science, and PsycINFO databases. Results: Of the original number of 5,146 studies, 15 were included in the scoping review. Works including historical and longitudinal data were considered. Overall, the results of the studies included in the review highlighted a relationship between heatwaves and above-average temperature and interpersonal violence, and highest temperatures are presented as a predictor of interpersonal violence. Discussion: The literature analysis underlines how climate change may affect people’s well-being, mental health, and behavior. However, it is essential to point out that most authors acknowledge their study’s limitations and that the results should be cautiously viewed. Future research is needed to better understand the relationship between heatwaves or above-average temperature and human health. Policymakers should implement programs to prevent violent behavior in terms of increased temperature adaptation and mitigation (e.g., promoting green spaces and reducing pollution) and at the level of individual city institutions, which can monitor the phenomenon and take action, such as increasing the presence of security personnel in anticipation of periods of highest temperatures.
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- 2024
5. Antecedents and consequences of work-related and personal bullying: A cross-sectional study in an Italian healthcare facility
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Adelina Brizio, Paola Gatti, and Daniela Acquadro Maran
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healthcare workers ,healthcare facility ,personal bullying ,workplace bullying ,workplace violence ,Psychology ,BF1-990 ,Medicine - Abstract
Introduction: Workplace bullying (WB), encompassing work-related bullying (WRB) and personal bullying (PB), significantly impacts workers and organizational culture. This study explores the broader implications of WB, focusing on its perception when associated with job functions versus when targeted at individuals. Methods: This cross-sectional study was carried out in a healthcare facility in northwestern Italy, involving 311 workers who responded to a questionnaire designed to assess the nature of bullying experienced. The survey explored various dimensions of WB, including psychosocial climate, leadership behavior, job satisfaction, and mental health outcomes. Results: Our findings indicated that WRB had a more detrimental impact than PB. Employees exposed to WRB reported lower job satisfaction (F(2, 295) = 59.048, p < .001), higher stress levels, and increased burnout (Emotional Exhaustion F(2, 294) = 40.346, p < .001). WRB was associated with negative perceptions of organizational fairness (F(2, 295) = 38.637, p < .001) and dynamism. PB also showed significant effects, particularly on team dynamics (MDOQ_team F(2, 294) = 52.514, p < .001) and communication (MDOQ_communic F(2, 294) = 15.038, p < .001). Discussion and Conclusions: WB profoundly deteriorates inter- and intra-group processes and undermines organizational culture, potentially affecting its legitimacy and reputation. The study underscores the need for organizational strategies that mitigate WB by promoting positive workplace environments and enhancing managerial practices to prevent bullying.
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- 2024
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6. Enhancing tolerance to Phytophthora spp. in eggplant through DMR6–1 CRISPR/Cas9 knockout
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Martina Ferrero, Danila Valentino, Anna Maria Milani, Cinzia Comino, Sergio Lanteri, Alberto Acquadro, and Andrea Moglia
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Susceptibility genes ,Phytophthora ,CRISPR/Cas9 ,pathogen tolerance ,Solanum melongena L ,Plant ecology ,QK900-989 - Abstract
Agricultural production is affected by the worsening effects of climate change with severe yield losses caused by rising temperatures, water scarcity and consequent modifications in the interactions between crops, pests, and pathogens. The availability of stress-tolerant plants will thus be a key point to guarantee the world food security in the next future. To this purpose, a significant contribution might be provided by the New Genomic Techniques (NGTs), such as CRISPR/Cas9, which allow to insert targeted modifications in the plants’ genomes offering new opportunities for crop improvement. Susceptibility genes encode proteins that pathogens can take advantage of during the colonization process, and their disabling confers a broad-spectrum and long-lasting pathogen tolerance to the plant. Among the S-genes, Downy Mildew Resistance 6 (DMR6) encodes an enzyme involved in Salicylic Acid (SA) degradation, and its inactivation in other Solanaceae species has proven to increase SA levels and confer tolerance to a broad spectrum of pathogens. We identified two orthologs of this gene in eggplant's genome, namely SmDMR6–1 and SmDMR6–2. In the ‘Black Beauty’ cultivar, only SmDMR6–1 expression significantly increased upon infection by the two oomycetes Phytophthora infestans and Phytophthora capsici, suggesting its involvement in the regulation of plant responses to biotic stresses. Here we report, for the first time in eggplant, the knockout of SmDMR6–1 gene through CRISPR/Cas9 technology. The regenerated T0 plants were screened by Sanger sequencing and one was selected and self-pollinated to generate T1 and then T2 plants. The mutant lines were subjected to pathogen assays which highlighted an increased tolerance to infection by P. infestans and P. capsici, if compared to non-edited plants.
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- 2024
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7. Genomic investigation of traits associated with nut and kernel in a full-sib population of European hazelnut
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Valentini, Nadia, Pavese, Vera, Martina, Matteo, Acquadro, Alberto, Torello Marinoni, Daniela, Botta, Roberto, and Portis, Ezio
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- 2025
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8. Knock-out of SlDMR6-1 in tomato promotes a drought-avoidance strategy and increases tolerance to Late Blight
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Alex Maioli, Federica De Marchi, Danila Valentino, Silvia Gianoglio, Davide Lucien Patono, Fabio Miloro, Yuling Bai, Cinzia Comino, Sergio Lanteri, Claudio Lovisolo, Alberto Acquadro, and Andrea Moglia
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Solanum lycopersicum L. ,Gene editing ,Downy mildew resistance 6 ,Susceptibility genes ,Drought stress ,Plant ecology ,QK900-989 - Abstract
The DOWNY MILDEW RESISTANCE 6 (DMR6) protein is a 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase, involved in salicylic acid (SA) metabolism. SA is recognized as an abiotic stress-tolerance enhancer, and in tomato the inactivation of DMR6 was found increase its level and induce disease-resistance against several pathogens. By applying the CRISPR/Cas9 technique, we generated Sldmr6-1 tomato mutants and tested their tolerance to drought as well as to Late Blight. Wild-type tomato cultivar ‘San Marzano’ and its Sldmr6-1 mutants were subjected to water deprivation for 7 days. WT plants exhibited severe wilting, while T2 Sldmr6-1 mutants showed turgid leaves and maintained higher Soil Relative Water Content. Eco-physiological measurements highlighted that Sldmr6-1 mutants adopted a water saving behavior reducing transpiration rate by decreasing stomatal conductance. Under drought stress the assimilation rate decreased as well, resulting in no alteration of the CO2 concentration in the sub-stomatal chamber and increasing the Water Use Efficiency. Furthermore, in Sldmr6-1 mutants the drought stress induced up-regulation of the anti-oxidant related genes SlAPX and SlGST as well as down-regulation of SlCYP707A2 gene, which is involved in ABA catabolism. At last we highlighted, for the first time in tomato, that Sldmr6-1 mutants exhibited a reduced susceptibility to Phytophthora infestans, the causal agent of Late Blight.
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- 2024
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9. Case report: A creatine kinase-borg scale values-based approach to tailor physical training in a central core myopathy patient
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Oscar Crisafulli, Jessica Lacetera, Giorgio Bottoni, Angela Berardinelli, Luca Grattarola, Martina Veltroni, Stefano Acquadro, Massimo Negro, Emanuela Lavaselli, and Giuseppe D’Antona
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neuromuscular disorder ,creatine kinase ,exercise tailoring ,resistance training ,aerobic training ,Physiology ,QP1-981 - Abstract
BackgroundPatients with central core myopathy (CCM) can be at risk of exercise-induced rhabdomyolysis and myalgia. Despite its possible positive effects, physical training has been long avoided in these patients as no population-specific exercise adaption strategies have been developed. Here we present the case of a 17-year-old male CCM patient who underwent a 3-month training program tailored to a preliminary test aimed at assessing his physical exertion tolerance measured via changes in serum creatine kinase (CK).MethodsThe preliminary tolerance test consisted of three 25-minute sessions (one session per week) of physical exercise (aerobic, resistance and mixed) at an intensity quantified as level 6 of the Borg Category Ratio (CR) 0–10 scale. A blood sample to assess CK was conducted 36 h following eachsession. The intervention consisted of a training program (three sessions per week) including both resistance and aerobic exercises concomitant with a personalized nutritional plan. Before and after intervention, a battery of metabolic (indirect calorimetry, bioimpedance) and cardiopulmonary (CPET) tests were performed.ResultsAfter training, improvements of the anaerobic threshold (+6.9%), normalized VO2 max (+15%) and body composition (muscle mass, +1.1 kg; fat mass, −1.1 kg were observed without pain, rhabdomyolysis, and blood CK augmentation compared to pretraining values.ConclusionOur results highlight that a mixed aerobic/resistance training, properly tailored and supported by a specific nutritional plan, may safely improve the physical fitness and body composition in a CCM patient. Dosing exercise-induced CK serum change following Borg CR-10 intensity assessment, may be useful to correctly tailor physical exercise in these patients.
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- 2024
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10. Consequences and coping strategies of nurses and registered nurses perceiving to work in an environment characterized by workplace bullying
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Daniela Acquadro Maran, Gianmarco Giacomini, Alessandro Scacchi, Roberta Bigarella, Nicola Magnavita, and Maria Michela Gianino
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Bullying in workplace ,Occupational risk ,Witness ,Well-being ,Coping strategies ,Public aspects of medicine ,RA1-1270 - Abstract
Aim: The aim of this study was to analyze the well-being and coping strategies of nurses working in an organizational setting perceived as characterized by workplace bullying. The innovative aspect of this study is that we considered only those who perceive to work in an organizational environment characterized by workplace bullying, and not those who see themselves as victims and those who perceive they work in an organizational environment not characterized by workplace bullying. Method: A questionnaire with the NAQ-R, PGWBI, Val.Mob. and Brief COPE scales was administered to nurses. To better understand this phenomenon, a comparison was made between 331 nurses and 166 workers in other professions who also work in an organizational environment perceived to be characterized by workplace bullying. Results: In both groups (nurses and workers), the results were approximately the same in terms of personal bullying and workplace bullying episodes and the number of physical and emotive symptoms. The PGWBI score was lower for nurses than for workers in other fields. Among the individual symptoms, nurses and registered nurses were more likely to report gastritis, insomnia and heartburn than workers in other contexts. Workers in other contexts were more likely than nurses to report symptoms of anxiety, fear, feelings of insecurity, inferiority and guilt. In terms of coping strategies, nurses were more likely than other workers to report distraction, substance use, emotional support, disengagement, venting, positive reframing, humor, and religion. Workers in other professional context were more likely than nurses to report active coping, denial, instrumental support, planning, acceptance, and self-blame. Conclusion: Results suggest that the consequences of working in a perceived organizational environment characterized by workplace bullying are similar for both groups of workers, with nonstatistical differences in perceived workplace bullying episodes and sum of physical and emotive symptoms. Implication: Overall, findings suggest that workplace bullying prevention is a fundamental element in training workers in all types of workplaces and should be an integral part of curriculum activities.
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- 2024
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11. Investigation of the precision of a novel jaw tracking system in recording mandibular movements: A preliminary clinical study
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Grande, Francesco, Lepidi, Luca, Tesini, Fabio, Acquadro, Alessio, Valenti, Chiara, Pagano, Stefano, and Catapano, Santo
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- 2024
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12. Keratoconus and the Impact of Treatment on Patients’ Quality of Life: A Qualitative Study
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Fournié, Pierre, Acquadro, Michaël, Touboul, David, Cochener, Béatrice, Chiambaretta, Frédéric, Muraine, Marc, Borderie, Vincent, Bourges, Jean-Louis, Benmedjahed, Khadra, Tugaut, Béatrice, Bernheim, Diane, Bourcier, Tristan, Burillon, Carole, David, Thierry, Delbosc, Bernard, Gain, Philippe, Hoffart, Louis, Labetoulle, Marc, Laroche, Laurent, Malet, Florence, Orignac, Isabelle, Robert, Pierre-Yves, Thuret, Gilles, Vabres, Bertrand, Malecaze, François, and Arnould, Benoit
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- 2023
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13. Editorial: Break the mental health stigma: mental health in the workplace
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Eduardo Fernández-Jiménez and Daniela Acquadro Maran
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mental health ,stigma ,discrimination ,workplace ,mental health stigma ,Psychiatry ,RC435-571 - Published
- 2024
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14. Structural and expression analysis of polyphenol oxidases potentially involved in globe artichoke (C. cardunculus var. scolymus L.) tissue browning
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Pompili, Valerio, Mazzocchi, Elena, Moglia, Andrea, Acquadro, Alberto, Comino, Cinzia, Rotino, Giuseppe Leonardo, and Lanteri, Sergio
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- 2023
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15. Guardians of quality: advancing Castanea sativa traceability using DNA analysis from seed to processed food
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Marino, Lorenzo Antonio, Pavese, Vera, Ruffa, Paola, Ferrero, Martina, Acquadro, Alberto, Barchi, Lorenzo, Botta, Roberto, and Torello Marinoni, Daniela
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- 2024
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16. Service-Learning in Courses of Psychology: An Experience at the University of Turin
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Maran, Daniela Acquadro, Craveri, Laura, Tirassa, Maurizio, and Begotti, Tatiana
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Interest in the implementation of service-learning (SL) in university courses in psychology has risen in recent years. SL allows the students not only to read and talk about social problems, but also to act upon them and thus to learn from practice as well. The aim of this work is to present the service-learning experienced in psychology courses at the University of Turin, Italy. The experiences--named "The Volunteer's Helpdesk" and "Service Learning: Urban Area Analysis and Proposals for Action"--were analyzed following the Comprehensive Action Plan for Service Learning (CAPSL) model proposed by Bringle and Hatcher (1996) for implementing SL in higher education. The work presented is intended to contribute to laying the foundation for a broader reflection on how to implement SL in university courses in psychology.
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- 2019
17. Revitalizing agriculture: next-generation genotyping and -omics technologies enabling molecular prediction of resilient traits in the Solanaceae family
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Matteo Martina, Valeria De Rosa, Gabriele Magon, Alberto Acquadro, Lorenzo Barchi, Gianni Barcaccia, Emanuele De Paoli, Alessandro Vannozzi, and Ezio Portis
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biotic and abiotic resistance ,eggplant ,genetic resources ,potato ,genomic resources ,pepper ,Plant culture ,SB1-1110 - Abstract
This review highlights -omics research in Solanaceae family, with a particular focus on resilient traits. Extensive research has enriched our understanding of Solanaceae genomics and genetics, with historical varietal development mainly focusing on disease resistance and cultivar improvement but shifting the emphasis towards unveiling resilience mechanisms in genebank-preserved germplasm is nowadays crucial. Collecting such information, might help researchers and breeders developing new experimental design, providing an overview of the state of the art of the most advanced approaches for the identification of the genetic elements laying behind resilience. Building this starting point, we aim at providing a useful tool for tackling the global agricultural resilience goals in these crops.
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- 2024
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18. Boosting grapevine breeding for climate-smart viticulture: from genetic resources to predictive genomics
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Gabriele Magon, Valeria De Rosa, Matteo Martina, Rachele Falchi, Alberto Acquadro, Gianni Barcaccia, Ezio Portis, Alessandro Vannozzi, and Emanuele De Paoli
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biotic and abiotic resistance ,grapevine ,genetic resources ,genomic resources ,vitis ,resilient traits ,Plant culture ,SB1-1110 - Abstract
The multifaceted nature of climate change is increasing the urgency to select resilient grapevine varieties, or generate new, fitter cultivars, to withstand a multitude of new challenging conditions. The attainment of this goal is hindered by the limiting pace of traditional breeding approaches, which require decades to result in new selections. On the other hand, marker-assisted breeding has proved useful when it comes to traits governed by one or few genes with great effects on the phenotype, but its efficacy is still restricted for complex traits controlled by many loci. On these premises, innovative strategies are emerging which could help guide selection, taking advantage of the genetic diversity within the Vitis genus in its entirety. Multiple germplasm collections are also available as a source of genetic material for the introgression of alleles of interest via adapted and pioneering transformation protocols, which present themselves as promising tools for future applications on a notably recalcitrant species such as grapevine. Genome editing intersects both these strategies, not only by being an alternative to obtain focused changes in a relatively rapid way, but also by supporting a fine-tuning of new genotypes developed with other methods. A review on the state of the art concerning the available genetic resources and the possibilities of use of innovative techniques in aid of selection is presented here to support the production of climate-smart grapevine genotypes.
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- 2023
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19. Negative emotions about climate change are related to insomnia symptoms and mental health: Cross-sectional evidence from 25 countries
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Ogunbode, Charles Adedayo, Pallesen, Ståle, Böhm, Gisela, Doran, Rouven, Bhullar, Navjot, Aquino, Sibele, Marot, Tiago, Schermer, Julie Aitken, Wlodarczyk, Anna, Lu, Su, Jiang, Feng, Salmela-Aro, Katariina, Hanss, Daniel, Maran, Daniela Acquadro, Ardi, Rahkman, Chegeni, Razieh, Tahir, Hajra, Ghanbarian, Elahe, Park, Joonha, Tsubakita, Takashi, Tan, Chee-Seng, van den Broek, Karlijn L., Chukwuorji, JohnBosco Chika, Ojewumi, Kehinde, Reyes, Marc Eric S., Lins, Samuel, Enea, Violeta, Volkodav, Tatiana, Sollar, Tomas, Navarro-Carrillo, Ginés, Torres-Marín, Jorge, Mbungu, Winfred, Onyutha, Charles, and Lomas, Michael J.
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- 2023
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20. Students' Satisfaction with the Group Work Method and Its Performance Evaluation: A Survey in an Italian University
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Zedda, Massimo, Bernardelli, Silvia, and Maran, Daniela Acquadro
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Group Work Learning Method is a cooperative learning technique that has positive effects in learning: students' active participation can increase both cognitive and social skills. Our work involved three cohorts of students of different years attending the same course at the University of Torino, Department of Psychology. The contents of the course were the same in all years, students were asked to form self-selected groups to find creative solutions to two cases regarding violent behavior in workplace. Satisfaction concerning this activity and the method to evaluate the performance of the activity were investigated. Findings confirm overall students' satisfaction related to group work learning method. This satisfaction improves the scores in course and teacher skills satisfaction. About the evaluation, findings shown that students agreed teacher's and peers' evaluation of the performance.
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- 2017
21. Pro-Environment Behaviors, Efficacy Beliefs, Perceived Individual and Social Norms: A Questionnaire Survey in a Sample of Young Adults From Pakistan
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Daniela Acquadro Maran, Matti Ullah Butt, and Tatiana Begotti
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History of scholarship and learning. The humanities ,AZ20-999 ,Social Sciences - Abstract
The aim of this work was to examine the relationships between climate change experiences and perceived individual and social norms related to climate change, individual and collective efficacy, and implementation of pro-environmental behaviors among a group of young adults from Pakistan. We examined these variables among 373 young adults in Pakistan and differentiated them into those who reported direct experience with climate change and those who did not. Findings show that 179 participants felt they had directly experienced a climate change event. Results also show that they were more likely to follow individual and social norms, perceive higher levels of individual and collective efficacy, and were more likely to adopt pro-environmental behaviors. Among participants who reported having had a direct experience, perceived social norms and individual self-efficacy emerged as predictors of pro-environmental behaviors, whereas among participants who reported not having had a direct experience, only perceived social norms were significant predictors. These results underscore the importance of sharing information about good environmental practices.
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- 2023
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22. Climate anxiety, wellbeing and pro-environmental action: correlates of negative emotional responses to climate change in 32 countries
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Ogunbode, Charles A., Doran, Rouven, Hanss, Daniel, Ojala, Maria, Salmela-Aro, Katariina, van den Broek, Karlijn L., Bhullar, Navjot, Aquino, Sibele D., Marot, Tiago, Schermer, Julie Aitken, Wlodarczyk, Anna, Lu, Su, Jiang, Feng, Maran, Daniela Acquadro, Yadav, Radha, Ardi, Rahkman, Chegeni, Razieh, Ghanbarian, Elahe, Zand, Somayeh, Najafi, Reza, Park, Joonha, Tsubakita, Takashi, Tan, Chee-Seng, Chukwuorji, JohnBosco Chika, Ojewumi, Kehinde Aderemi, Tahir, Hajra, Albzour, Mai, Reyes, Marc Eric S., Lins, Samuel, Enea, Violeta, Volkodav, Tatiana, Sollar, Tomas, Navarro-Carrillo, Ginés, Torres-Marín, Jorge, Mbungu, Winfred, Ayanian, Arin H., Ghorayeb, Jihane, Onyutha, Charles, Lomas, Michael J., Helmy, Mai, Martínez-Buelvas, Laura, Bayad, Aydin, and Karasu, Mehmet
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- 2022
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23. Editorial: Spirituality in the workplace
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Francesco Chirico, Daniela Acquadro Maran, and Manoj Sharma
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worksite ,workplace spirituality ,spiritual wellbeing ,psychology ,occupational health psychology ,health ,Psychology ,BF1-990 - Published
- 2023
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24. Diversity analyses in two ornamental and large-genome Ranunculaceae species based on a low-cost Klenow NGS-based protocol
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Matteo Martina, Alberto Acquadro, Ezio Portis, Lorenzo Barchi, and Sergio Lanteri
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K-seq ,genotyping ,ornamentals ,Ranunculus asiaticus ,Anemone coronaria ,fingerprinting ,Plant culture ,SB1-1110 - Abstract
Persian buttercup (Ranunculus asiaticus L.) and poppy anemone (Anemone coronaria L.) are ornamental, outcrossing, perennial species belonging to the Ranunculaceae family, characterized by large and highly repetitive genomes. We applied K-seq protocol in both species to generate high-throughput sequencing data and produce a large number of genetic polymorphisms. The technique entails the application of Klenow polymerase-based PCR using short primers designed by analyzing k-mer sets in the genome sequence. To date the genome sequence of both species has not been released, thus we designed primer sets based on the reference the genome sequence of the related species Aquilegia oxysepala var. kansuensis (Brühl). A whole of 11,542 SNPs were selected for assessing genetic diversity of eighteen commercial varieties of R. asiaticus, while 1,752 SNPs for assessing genetic diversity in six cultivars of A. coronaria. UPGMA dendrograms were constructed and in R. asiaticus integrated in with PCA analysis. This study reports the first molecular fingerprinting within Persian buttercup, while the results obtained in poppy anemone were compared with a previously published SSR-based fingerprinting, proving K-seq to be an efficient protocol for the genotyping of complex genetic backgrounds.
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- 2023
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25. Comparison of the inter-item correlations of the Big Five Inventory-10 (BFI-10) between Western and non-Western contexts
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Park, Joonha, van den Broek, Karlijn L., Bhullar, Navjot, Ogunbode, Charles Adedayo, Schermer, Julie Aitken, Doran, Rouven, Ardi, Rahkman, Hanss, Daniel, Maran, Daniela Acquadro, Albzour, Mai, Aquino, Sibele D., Ayanian, Arin H., Chegeni, Razieh, Chukwuorji, JohnBosco Chika, Enea, Violeta, Ghanbarian, Elahe, Ghorayeb, Jihane, Jiang, Feng, Kehinde, Ojewumi Aderemi, Lins, Samuel, Lomas, Michael J., Lu, Su, Marot, Tiago, Mbungu, Winfred, Navarro-Carrillo, Ginés, Onyutha, Charles, Reyes, Marc Eric S., Salmela-Aro, Katariina, Sollar, Tomas, Tahir, Hajra, Tan, Chee-Seng, Torres-Marín, Jorge, Tsubakita, Takashi, Volkodav, Tatiana, Wlodarczyk, Anna, and Yadav, Radha
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- 2022
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26. Global range expansion history of pepper ( Capsicum spp.) revealed by over 10,000 genebank accessions
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Tripodi, Pasquale, Rabanus-Wallace, Mark Timothy, Barchi, Lorenzo, Kale, Sandip, Esposito, Salvatore, Acquadro, Alberto, Schafleitner, Roland, van Zonneveld, Maarten, Prohens, Jaime, Diez, Maria José, Börner, Andreas, Salinier, Jérémy, Caromel, Bernard, Bovy, Arnaud, Boyaci, Filiz, Pasev, Gancho, Brandt, Ronny, Himmelbach, Axel, Portis, Ezio, Finkers, Richard, Lanteri, Sergio, Paran, Ilan, Lefebvre, Véronique, Giuliano, Giovanni, and Stein, Nils
- Published
- 2021
27. Use of online and paper-and-pencil questionnaires to assess the distribution of orthorexia nervosa, muscle dysmorphia and eating disorders among university students: can different approaches lead to different results?
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Gorrasi, Ilaria Silvia Rossella, Ferraris, Cinzia, Degan, Raffaella, Daga, Giovanni Abbate, Bo, Simona, Tagliabue, Anna, Guglielmetti, Monica, Roppolo, Mattia, Gilli, Giorgio, Maran, Daniela Acquadro, and Carraro, Elisabetta
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- 2022
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28. A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution
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Barchi, Lorenzo, Pietrella, Marco, Venturini, Luca, Minio, Andrea, Toppino, Laura, Acquadro, Alberto, Andolfo, Giuseppe, Aprea, Giuseppe, Avanzato, Carla, Bassolino, Laura, Comino, Cinzia, Molin, Alessandra Dal, Ferrarini, Alberto, Maor, Louise Chappell, Portis, Ezio, Reyes-Chin-Wo, Sebastian, Rinaldi, Riccardo, Sala, Tea, Scaglione, Davide, Sonawane, Prashant, Tononi, Paola, Almekias-Siegl, Efrat, Zago, Elisa, Ercolano, Maria Raffaella, Aharoni, Asaph, Delledonne, Massimo, Giuliano, Giovanni, Lanteri, Sergio, and Rotino, Giuseppe Leonardo
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Agricultural ,Veterinary and Food Sciences ,Biological Sciences ,Bioinformatics and Computational Biology ,Genetics ,Horticultural Production ,Biotechnology ,Human Genome ,Chromosomes ,Plant ,Ethylenes ,Evolution ,Molecular ,Gene Regulatory Networks ,Genome ,Plant ,MicroRNAs ,Solanum melongena - Abstract
With approximately 450 species, spiny Solanum species constitute the largest monophyletic group in the Solanaceae family, but a high-quality genome assembly from this group is presently missing. We obtained a chromosome-anchored genome assembly of eggplant (Solanum melongena), containing 34,916 genes, confirming that the diploid gene number in the Solanaceae is around 35,000. Comparative genomic studies with tomato (S. lycopersicum), potato (S. tuberosum) and pepper (Capsicum annuum) highlighted the rapid evolution of miRNA:mRNA regulatory pairs and R-type defense genes in the Solanaceae, and provided a genomic basis for the lack of steroidal glycoalkaloid compounds in the Capsicum genus. Using parsimony methods, we reconstructed the putative chromosomal complements of the key founders of the main Solanaceae clades and the rearrangements that led to the karyotypes of extant species and their ancestors. From 10% to 15% of the genes present in the four genomes were syntenic paralogs (ohnologs) generated by the pre-γ, γ and T paleopolyploidy events, and were enriched in transcription factors. Our data suggest that the basic gene network controlling fruit ripening is conserved in different Solanaceae clades, and that climacteric fruit ripening involves a differential regulation of relatively few components of this network, including CNR and ethylene biosynthetic genes.
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- 2019
29. Lived experiences of patients with distal renal tubular acidosis treated with ADV7103 and of their caregivers: a qualitative study
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Michaël Acquadro, Alexia Marrel, Maria A. Manso-Silván, Catherine Guittet, Sophie Joukoff, and Aurélia Bertholet-Thomas
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dRTA ,Potassium citrate and potassium bicarbonate ,Qualitative research ,Patient-reported outcomes ,Medicine - Abstract
Abstract Background Consequences of distal renal tubular acidosis (dRTA) on growth, bone and kidney, sometimes associated with hearing loss, may significantly affect quality of life (QoL). This descriptive qualitative study explores QoL linked to dRTA and gathers the impressions of patients with this rare disease (and caregivers) 5 years after enrolment in a clinical study, during which patients were treated with ADV7103, a prolonged-release granule formulation combining potassium citrate and potassium bicarbonate. Semi-structured, one-hour interviews with 6 adult and 13 paediatric patients with a confirmed diagnosis of dRTA and with parents of paediatric patients were performed using an interview guide. Qualitative analysis of anonymized interview transcripts based on grounded theory was conducted. Results The main QoL domains impacted by dRTA and its treatment were education/work, social/family life, and emotional and physical well-being. ADV7103 (administered twice daily) was compared with the standard of care (SoC) taken before study entry (more than twice daily). Patients/parents reported that switching from previous SoC to ADV7103 had changed their lives: Difficulties at school due to burdensome administrative issues and need to explain disease and treatment affecting all families of paediatric patients (n = 13) disappeared, facilitating parents who had stopped working (to deal with their child’s treatment) to return to work, Family functioning was improved (n = 18), as travel and holidays became easier to organise and patients/parents stopped thinking about managing treatment daily/nightly, reducing tension in the family or couple, The emotional burden of disease perceived was relieved (n = 12) in the absence of treatment-related invasive questions from others, Gastro-intestinal adverse events and taste problems improved with ADV7103 (n = 18) and better compliance led to milder physical impacts and less need to be hospitalised. The mean satisfaction score with ADV7103 compared to SoC was 9 out of 10 (10 = very satisfied). ADV7103 exceeded or met the expectations of 14 out of 17 patients that commented on that. Conclusions Qualitative interviews show that dRTA and its treatment have a significant impact on QoL of patients and parents and that ADV7103 helps improve daily-life and reduces treatment burden, resulting in greater overall satisfaction of the patients and their families. Trial registration EU Clinical Trials Register, EudraCT 2013-003828-36 on the 3rd of September 2013.
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- 2022
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30. Attitudes toward organizational change and their association with exhaustion in a sample of Italian police workers
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Lara Colombo, Daniela Acquadro Maran, and Annalisa Grandi
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police officers ,burnout ,change beliefs ,resistance to change ,role ,gender ,Psychology ,BF1-990 - Abstract
IntroductionChange management is an important topic for organizations and some personal characteristics may help or hinder coping with change.MethodsThe aim of the present study was to find out whether attitudes toward organizational change can predict work-related exhaustion in a sample of police workers (N = 532) in northern Italy. Differences between groups in relation to role (police officers vs. other roles) and gender were also considered.ResultsThe results of hierarchical regression showed that change beliefs were negatively associated to exhaustion, while resistance to change was positively related to exhaustion; role and gender were also significantly and positive associated with the dependent variable. Regarding differences between groups, police officers had lower positive change beliefs and higher levels of exhaustion compared to workers in other roles. Regarding gender, women reported higher levels of exhaustion than men.DiscussionThe results of the present study provide further insights into what aspects should be considered when promoting organizational change in the police work context.
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- 2023
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31. Attitudes & behaviors toward the management of tobacco smoking patients: qualitative study with French primary care physicians
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Coindard, Guillaume, Acquadro, Michaël, Chaumont, Raphaël, Arnould, Benoit, Boisnault, Philippe, Collignon-Portes, Rachel, Duhot, Didier, Raineri, François, Tugaut, Béatrice, and Aubin, Henri-Jean
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- 2022
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32. Editorial: Secondary traumatic stress: Risk factors, consequences, and coping strategies
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Daniela Acquadro Maran, Valentina Dolce, and Lara Colombo
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secondary trauma stress ,coping strategies ,risk factors ,consequence ,vicarious trauma ,Psychology ,BF1-990 - Published
- 2023
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33. Working during the COVID-19 pandemic: Demands, resources, and mental wellbeing
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Tabea Eleonore Scheel, Lydia Bendixen, Jakub Procházka, and Daniela Acquadro Maran
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COVID-19 pandemic ,JD-R model ,work intensification ,irritation ,home office ,Psychology ,BF1-990 - Abstract
The aim of this study was to investigate the relationship between working conditions at the start of the COVID-19 pandemic (spring 2020) and employees’ mental wellbeing. According to the Job Demands-Resources (JD-R) model, work intensification, increased difficulty in accomplishing work tasks, heightened risk of infection by COVID-19, and increasingly working from home may detrimentally relate to irritation. However, personal and job resources (e.g., occupational self-efficacy, social support) may buffer. Data from 680 employees from four European countries were analyzed by means of path analyses and polynomial regression. Work intensification was significantly positively associated with cognitive and affective irritation; other job demands were not. However, working from home prior to as well as during the pandemic was related to higher cognitive irritation. None of the moderators was of meaningful significance. Reducing work intensification as well as enduring home office seems to be crucial for interventions.
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- 2023
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34. Who is the Stalker and Who is the Victim? The Influence of Gender Ideologies in the Perception of Stalker/Victim Pairs: A Cross-Sectional Study
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Miglietta, Anna, Rizzo, Marco, and Acquadro Maran, Daniela
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- 2021
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35. Persistent Coronavirus Disease 2019 Headache Relieved with Sphenopalatine Ganglion Block
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Danielle Levin, Martin Acquadro, Joseph Cerasuolo, and Frederic J. Gerges
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Anesthesiology ,RD78.3-87.3 - Published
- 2022
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36. Management of lung cancer patients' quality of life in clinical practice: a Delphi study
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Westeel, V., Bourdon, M., Cortot, A.B., Debieuvre, D., Toffart, A.-C., Acquadro, M., Arnould, B., Lambert, J., Cotte, F.-E., Gaudin, A.-F., and Lemasson, H.
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- 2021
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37. First genetic maps development and QTL mining in Ranunculus asiaticus L. through ddRADseq
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Matteo Martina, Alberto Acquadro, Davide Gulino, Fabio Brusco, Mario Rabaglio, Ezio Portis, and Sergio Lanteri
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ornamentals ,ddRADseq ,linkage maps ,genetic markers ,anthocyanins ,QTLs ,Plant culture ,SB1-1110 - Abstract
Persian Buttercup (Ranunculus asiaticus L.; 2x=2n=16; estimated genome size: 7.6Gb) is an ornamental and perennial crop native of Asia Minor and Mediterranean basin, marketed both as cut flower or potted plant. Currently new varieties are developed by selecting plants carrying desirable traits in segregating progenies obtained by controlled mating, which are propagated through rhizomes or micro-propagated in vitro. In order to escalate selection efficiency and respond to market requests, more knowledge of buttercup genetics would facilitate the identification of markers associated with loci and genes controlling key ornamental traits, opening the way for molecular assisted breeding programs. Reduced-representation sequencing (RRS) represents a powerful tool for plant genotyping, especially in case of large genomes such as the one of buttercup, and have been applied for the development of high-density genetic maps in several species. We report on the development of the first molecular-genetic maps in R. asiaticus based on of a two-way pseudo-testcross strategy. A double digest restriction-site associated DNA (ddRAD) approach was applied for genotyping two F1 mapping populations, whose female parents were a genotype of a so called ‘ponpon’ and of a ‘double flower’ varieties, while the common male parental (‘Cipro’) was a genotype producing a simple flower. The ddRAD generated a total of ~2Gb demultiplexed reads, resulting in an average of 8,3M reads per line. The sstacks pipeline was applied for the construction of a mock reference genome based on sequencing data, and SNP markers segregating in only one of the parents were retained for map construction by treating the F1 population as a backcross. The four parental maps (two of the female parents and two of the common male parent) were aligned with 106 common markers and 8 linkage groups were identified, corresponding to the haploid chromosome number of the species. An average of 586 markers were associated with each parental map, with a marker density ranging from 1 marker/cM to 4.4 markers/cM. The developed maps were used for QTL analysis for flower color, leading to the identification of major QTLs for purple pigmentation. These results contribute to dissect on the genetics of Persian buttercup, enabling the development of new approaches for future varietal development.
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- 2022
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38. Genomic Analysis Highlights Putative Defective Susceptibility Genes in Tomato Germplasm
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Ruiling Li, Alex Maioli, Sergio Lanteri, Andrea Moglia, Yuling Bai, and Alberto Acquadro
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tomato germplasm ,genome sequencing ,susceptibility genes ,SNPs ,CRISPR/Cas9 ,Botany ,QK1-989 - Abstract
Tomato (Solanum lycopersicum L.) is one of the most widely grown vegetables in the world and is impacted by many diseases which cause yield reduction or even crop failure. Breeding for disease resistance is thus a key objective in tomato improvement. Since disease arises from a compatible interaction between a plant and a pathogen, a mutation which alters a plant susceptibility (S) gene facilitating compatibility may induce broad-spectrum and durable plant resistance. Here, we report on a genome-wide analysis of a set of 360 tomato genotypes, with the goal of identifying defective S-gene alleles as a potential source for the breeding of resistance. A set of 125 gene homologs of 10 S-genes (PMR 4, PMR5, PMR6, MLO, BIK1, DMR1, DMR6, DND1, CPR5, and SR1) were analyzed. Their genomic sequences were examined and SNPs/indels were annotated using the SNPeff pipeline. A total of 54,000 SNPs/indels were identified, among which 1300 were estimated to have a moderate impact (non-synonymous variants), while 120 were estimated to have a high impact (e.g., missense/nonsense/frameshift variants). The latter were then analyzed for their effect on gene functionality. A total of 103 genotypes showed one high-impact mutation in at least one of the scouted genes, while in 10 genotypes, more than 4 high-impact mutations in as many genes were detected. A set of 10 SNPs were validated through Sanger sequencing. Three genotypes carrying high-impact homozygous SNPs in S-genes were infected with Oidium neolycopersici, and two highlighted a significantly reduced susceptibility to the fungus. The existing mutations fall within the scope of a history of safe use and can be useful to guide risk assessment in evaluating the effect of new genomic techniques.
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- 2023
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39. Antioxidant activity and comparative RNA‐seq analysis support mitigating effects of an algae‐based biostimulant on drought stress in tomato plants.
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Cerruti, Paolo, Campobenedetto, Cristina, Montrucchio, Elisa, Agliassa, Chiara, Contartese, Valeria, Acquadro, Alberto, and Bertea, Cinzia Margherita
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RNA modification & restriction ,CHANNELS (Hydraulic engineering) ,ASCOPHYLLUM nodosum ,SUSTAINABLE agriculture ,FREE radical scavengers ,LAMINARIA - Abstract
Drought is a significant global environmental stress. Biostimulants offer a sustainable solution to enhance crop tolerance and mitigate productivity losses. This study assessed the impact of foliar application of ERANTHIS®, a biostimulant derived from the algae Ascophyllum nodosum and Laminaria digitata and yeast extracts, on tomato plants under mild water stress. Evaluations were conducted at 5 and 24 hours after the third treatment. Under optimal water conditions, the biostimulant showed a priming effect, with an early increase of stress markers and a timing‐specific modulation of ROS non enzymatic and enzymatic ROS scavenging activities. Under drought stress, the biostimulant later decreased stress markers, by aligning the majority of analyzed ROS scavengers closer to levels in well‐irrigated plants. Transcriptome analysis using RNA‐seq data revealed differentially expressed genes (DEGs) and multivariate data highlighted groups of co‐regulated genes (k‐means clustering). Genes involved in water channel activity, transcription regulator activity, and oxidoreductase activity were significantly modulated. Cluster analysis identified distinct gene clusters influenced by the biostimulant under optimal conditions, including early responses (cell wall modification, hormone signaling) and late responses (RNA modification, nutrient uptake process). Under water stress, early responses involved actin filament organization and MAPK signaling, while late responses were related to plasma membrane components and cell wall organization. This study, integrating biochemical and transcriptomic data, provides a comprehensive understanding of how a biostimulant primes plants under optimal conditions and mitigates water stress effects, offering valuable insights for sustainable agriculture. [ABSTRACT FROM AUTHOR]
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- 2024
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40. Digital Escape Rooms: A Resource for Environmental Education.
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Repetto, Manuela, Bianco Prevot, Alessandra, Brizio, Adelina, Boldi, Arianna, Talarico, Melania, Stanchi, Silvia, Palma, Davide, and Acquadro Maran, Daniela
- Abstract
Today's adolescents represent an elective target in addressing environmental challenges. Education is a key factor in achieving a sustainable future for them. However, formal education can represent a challenge when youths are its target, as they are considered the "interactive generation". Game-based learning, and, in particular, Digital Educational Escape Rooms (DERs), have emerged as innovative methods in education, with promising applications in environmental sustainability studies. In this study, we developed 14 Digital Escape Rooms using the Social Cognitive Theory of Bandura as a theoretical framework. These were focused on environmental education and we tested them on a sample of 411 students (aged 12–18 years; 158 female, 38.4%). A one-group quasi-experimental research design was adopted, carrying out a pre-test post-test analysis. Each participant completed assessments at two time points: before engaging in the escape rooms (T0) and after (T1). The assessment tools included the Goal Assessment Scale (GAS) and the Perceived Climate Self-Efficacy Scale. Our findings revealed no significant gender differences in goal achievement. However, at T0, females exhibited higher levels of perceived climate self-efficacy in both individual and collective dimensions. Instead, the Digital Escape Rooms appeared particularly effective in increasing self-efficacy among male participants. These results suggest that Digital Escape Rooms hold potential for enhancing environmental self-efficacy, although gender differences in baseline efficacy levels warrant further exploration. [ABSTRACT FROM AUTHOR]
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- 2024
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41. Witnessing mobbing: Psychological consequences for men and women. A study in Israel.
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Eldan, Ilana, Tirassa, Maurizio, Zedda, Massimo, Chiorri, Carlo, and Maran, Daniela Acquadro
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MENTAL depression ,PUBLIC administration ,REPUTATION ,PRIVATE companies ,ANXIETY ,VIOLENCE in the workplace ,MOBS - Abstract
Copyright of BPA - Applied Psychology Bulletin (Bollettino di Psicologia Applicata) is the property of Giunti O.S. Organizzazioni Speciali and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2024
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42. The Population Structure of a Globe Artichoke Worldwide Collection, as Revealed by Molecular and Phenotypic Analyzes
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Domenico Rau, Giovanna Attene, Monica Rodriguez, Limbo Baghino, Anna Barbara Pisanu, Davide Sanna, Alberto Acquadro, Ezio Portis, and Cinzia Comino
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Cynara cardunculus var. scolymus L. ,divergent selection ,germplasm collection ,microsatellite ,QST ,quantitative traits ,Plant culture ,SB1-1110 - Abstract
The knowledge of the organization of the domesticated gene pool of crop species is an essential requirement to understand crop evolution, to rationalize conservation programs, and to support practical decisions in plant breeding. Here, we integrate simple sequence repeat (SSR) analysis and phenotypic characterization to investigate a globe artichoke collection that comprises most of the varieties cultivated worldwide. We show that the cultivated gene pool of globe artichoke includes five distinct genetic groups associated with the major phenotypic typologies: Catanesi (which based on our analysis corresponds to Violetti di Provenza), Spinosi, Violetti di Toscana, Romaneschi, and Macau. We observed that 17 and 11% of the molecular and phenotypic variance, respectively, is between these groups, while within groups, strong linkage disequilibrium and heterozygote excess are evident. The divergence between groups for quantitative traits correlates with the average broad-sense heritability within the groups. The phenotypic divergence between groups for both qualitative and quantitative traits is strongly and positively correlated with SSR divergence (FST) between groups. All this implies a low population size and strong bottleneck effects, and indicates a long history of clonal propagation and selection during the evolution of the domesticated gene pool of globe artichoke. Moreover, the comparison between molecular and phenotypic population structures suggests that harvest time, plant architecture (i.e., plant height, stem length), leaf spininess, head morphology (i.e., head shape, bract shape, spininess) together with the number of heads per plant were the main targets of selection during the evolution of the cultivated germplasm. We emphasize our findings in light of the potential exploitation of this collection for association mapping studies.
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- 2022
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43. In-Depth Characterization of greenflesh Tomato Mutants Obtained by CRISPR/Cas9 Editing: A Case Study With Implications for Breeding and Regulation
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Silvia Gianoglio, Cinzia Comino, Andrea Moglia, Alberto Acquadro, Víctor García-Carpintero, Gianfranco Diretto, Filippo Sevi, José Luis Rambla, Gabriella Dono, Danila Valentino, Elena Moreno-Giménez, Mateu Fullana-Pericàs, Miguel A. Conesa, Jeroni Galmés, Sergio Lanteri, Andrea Mazzucato, Diego Orzáez, and Antonio Granell
- Subjects
CRISPR-Cas9 ,tomato ,staygreen ,greenflesh ,nutritional quality ,pathogen resistance ,Plant culture ,SB1-1110 - Abstract
Gene editing has already proved itself as an invaluable tool for the generation of mutants for crop breeding, yet its ultimate impact on agriculture will depend on how crops generated by gene editing technologies are regulated, and on our ability to characterize the impact of mutations on plant phenotype. A starting operational strategy for evaluating gene editing-based approaches to plant breeding might consist of assessing the effect of the induced mutations in a crop- and locus-specific manner: this involves the analysis of editing efficiency in different cultivars of a crop, the assessment of potential off-target mutations, and a phenotypic evaluation of edited lines carrying different mutated alleles. Here, we targeted the GREENFLESH (GF) locus in two tomato cultivars (‘MoneyMaker’ and ‘San Marzano’) and evaluated the efficiency, specificity and mutation patterns associated with CRISPR/Cas9 activity for this gene. The GF locus encodes a Mg-dechelatase responsible for initiating chlorophyll degradation; in gf mutants, ripe fruits accumulate both carotenoids and chlorophylls. Phenotypic evaluations were conducted on two transgene-free T2 ‘MoneyMaker’ gf lines with different mutant alleles (a small insertion of 1 nucleotide and a larger deletion of 123 bp). Both lines, in addition to reduced chlorophyll degradation, showed a notable increase in carotenoid and tocopherol levels during fruit ripening. Infection of gf leaves and fruits with Botrytis cinerea resulted in a significant reduction of infected area and pathogen proliferation compared to the wild type (WT). Our data indicates that the CRISPR/Cas9-mediated mutation of the GF locus in tomato is efficient, specific and reproducible and that the resulting phenotype is robust and consistent with previously characterized greenflesh mutants obtained with different breeding techniques, while also shedding light on novel traits such as vitamin E overaccumulation and pathogen resistance. This makes GF an appealing target for breeding tomato cultivars with improved features for cultivation, as well as consumer appreciation and health.
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- 2022
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44. Good practices for the translation, cultural adaptation, and linguistic validation of clinician-reported outcome, observer-reported outcome, and performance outcome measures
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Shawn McKown, Catherine Acquadro, Caroline Anfray, Benjamin Arnold, Sonya Eremenco, Christelle Giroudet, Mona Martin, and Dana Weiss
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Translation ,Linguistic validation ,Clinical outcome assessments ,Clinician-reported outcome measures ,Observer-reported outcome measures ,Performance outcome measures ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Within current literature and practice, the category of patient-reported outcome (PRO) measures has been expanded into the broader category of clinical outcome assessments (COAs), which includes the subcategory of PRO, as well as clinician-reported outcome (ClinRO), observer-reported outcome (ObsRO), and performance outcome (PerfO) measure subcategories. However, despite this conceptual expansion, recommendations associated with translation, cultural adaptation, and linguistic validation of COAs remain focused on PRO measures, which has created a gap in specific process recommendations for the remaining types. This lack of recommendations has led to inconsistent approaches being implemented, leading to uncertainty in the scientific community regarding suitable methods. To address this gap, the ISOQOL Translation and Cultural Adaptation Special Interest Group (TCA-SIG) has developed recommendations specific to each of the three COA types currently lacking such documentation to support a standardized approach to their translation, cultural adaptation, and linguistic validation. The recommended process utilized to translate ObsRO, ClinRO and PerfO measures from one language to another aligns closely with the industry standard process for PRO measures. The substantial differences between respondent categories across COA types require targeted approaches to the cognitive interviewing procedures utilized within the linguistic validation process, including the use of patients for patient-facing text in ClinRO measures, and the need to interview the targeted observers for ObsROs measures.
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- 2020
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45. 'Mind the Gap': Hi-C Technology Boosts Contiguity of the Globe Artichoke Genome in Low-Recombination Regions
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Alberto Acquadro, Ezio Portis, Danila Valentino, Lorenzo Barchi, and Sergio Lanteri
- Subjects
genomics ,ngs ,hi-c libraries ,cynara cardunculus ,Genetics ,QH426-470 - Abstract
Globe artichoke (Cynara cardunculus var. scolymus; 2n2x=34) is cropped largely in the Mediterranean region, being Italy the leading world producer; however, over time, its cultivation has spread to the Americas and China. In 2016, we released the first (v1.0) globe artichoke genome sequence (http://www.artichokegenome.unito.it/). Its assembly was generated using ∼133-fold Illumina sequencing data, covering 725 of the 1,084 Mb genome, of which 526 Mb (73%) were anchored to 17 chromosomal pseudomolecules. Based on v1.0 sequencing data, we generated a new genome assembly (v2.0), obtained from a Hi-C (Dovetail) genomic library, and which improves the scaffold N50 from 126 kb to 44.8 Mb (∼356-fold increase) and N90 from 29 kb to 17.8 Mb (∼685-fold increase). While the L90 of the v1.0 sequence included 6,123 scaffolds, the new v2.0 just 15 super-scaffolds, a number close to the haploid chromosome number of the species. The newly generated super-scaffolds were assigned to pseudomolecules using reciprocal blast procedures. The cumulative size of unplaced scaffolds in v2.0 was reduced of 165 Mb, increasing to 94% the anchored genome sequence. The marked improvement is mainly attributable to the ability of the proximity ligation-based approach to deal with both heterochromatic (e.g.: peri-centromeric) and euchromatic regions during the assembly procedure, which allowed to physically locate low recombination regions. The new high-quality reference genome enhances the taxonomic breadth of the data available for comparative plant genomics and led to a new accurate gene prediction (28,632 genes), thus promoting the map-based cloning of economically important genes.
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- 2020
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46. To what degree are orphan drugs patient-centered? A review of the current state of clinical research in rare diseases
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Sally Lanar, Catherine Acquadro, James Seaton, Isabelle Savre, and Benoit Arnould
- Subjects
Patient-centricity ,Patient-reported outcomes ,Rare diseases ,Orphan drugs ,Clinical trials ,Labeling claims ,Medicine - Abstract
Abstract Background Over the past 30 years, the healthcare industry has increasingly turned its attention to rare diseases. Regulators have emphasized the need for clinical research in this area to be patient-centered. However, there is a lack of evidence concerning whether this need is actually met. In this paper, we aim to address this gap. Methods First, we describe the state of patient-centricity in clinical research in rare diseases based on a targeted literature review. Second, we discuss recommendations from scientific bodies on patient-reported outcome (PRO) measures in rare diseases. Third, we analyze data collected from EMA’s and FDA’s websites concerning rare disease labeling claims and data from Clinicaltrials.gov concerning the use of PRO measures in rare disease pivotal trials. Fourth, we perform an exhaustive literature review on the use of PRO measures in the pharmaceutical industry, including all phases of clinical research, observational/registry studies, and instrument development and validation. Results There is limited information on rare disease patient engagement in study design, recruitment, and retention. None of the initiatives describing methods for developing PRO measures in rare diseases provide the clear guidance clinical researchers need. Only 17.4% of orphan drug labels contain a PRO measure. Less than half of pivotal trials in orphan drugs have a PRO measure as a primary or a secondary endpoint. Although the number of publications about PRO measures in rare diseases has risen in the past fifteen years, our results indicate that substantial improvements are needed to achieve patient-centricity. Conclusions The nature and extent of patient engagement in rare disease research is under-documented. The current paradigm for developing and using PRO measures in clinical research is failing to meet the needs of rare disease patients. Not only are PROs rarely used as high-level endpoints in clinical trials or taken into account in labeling claims, they are also under-researched overall – there are too few measures for the multitude of rare diseases. We call for a clear guidance on patient engagement and suggest a realistic approach to the adaptation of PRO strategy to the specific context of clinical research in rare diseases.
- Published
- 2020
- Full Text
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47. Workplace violence: Prevalence, risk factors and preventive measures across the globe
- Author
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Daniela ACQUADRO MARAN
- Subjects
healthcare ,occupational health ,risk factors ,prevention ,psychology ,workplace violence. ,Medicine (General) ,R5-920 ,Social sciences (General) ,H1-99 - Abstract
Workplace violence is a term referred both to physical and psychological violence that occurs at work. The investigation of this phenomenon is essential, because the knowledge about the nature of the prior relationship victim-perpetrator, the behaviour acted by the perpetrator and the strategies adopted by the victim to cope with the experience of victimization, the consequences on individuals, society and organization, give to scholars and practitioners significant information that could be useful to improve the organizational prevention and intervention. This viewpoint described prevalence of workplace violence across the globe, as well as risk factors and preventive measures that employers may put in place in order to contrast this widespread phenomenon. Direct and indirect costs of workplace violence are high, thus governments and policymakers should address this issue with legislative interventions, supporting employers who have the task to carefully consider this psychosocial risk factor in their risk assessment process as well.
- Published
- 2020
- Full Text
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48. The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny
- Author
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Scaglione, Davide, Reyes-Chin-Wo, Sebastian, Acquadro, Alberto, Froenicke, Lutz, Portis, Ezio, Beitel, Christopher, Tirone, Matteo, Mauro, Rosario, Lo Monaco, Antonino, Mauromicale, Giovanni, Faccioli, Primetta, Cattivelli, Luigi, Rieseberg, Loren, Michelmore, Richard, and Lanteri, Sergio
- Subjects
Biological Sciences ,Bioinformatics and Computational Biology ,Genetics ,Biotechnology ,Human Genome ,Breeding ,Chromosome Mapping ,Computational Biology ,Cynara scolymus ,DNA ,Satellite ,Genome ,Plant ,Genomics ,High-Throughput Nucleotide Sequencing ,MicroRNAs ,Microsatellite Repeats ,Molecular Sequence Annotation ,Multigene Family ,Repetitive Sequences ,Nucleic Acid - Abstract
Globe artichoke (Cynara cardunculus var. scolymus) is an out-crossing, perennial, multi-use crop species that is grown worldwide and belongs to the Compositae, one of the most successful Angiosperm families. We describe the first genome sequence of globe artichoke. The assembly, comprising of 13,588 scaffolds covering 725 of the 1,084 Mb genome, was generated using ~133-fold Illumina sequencing data and encodes 26,889 predicted genes. Re-sequencing (30×) of globe artichoke and cultivated cardoon (C. cardunculus var. altilis) parental genotypes and low-coverage (0.5 to 1×) genotyping-by-sequencing of 163 F1 individuals resulted in 73% of the assembled genome being anchored in 2,178 genetic bins ordered along 17 chromosomal pseudomolecules. This was achieved using a novel pipeline, SOILoCo (Scaffold Ordering by Imputation with Low Coverage), to detect heterozygous regions and assign parental haplotypes with low sequencing read depth and of unknown phase. SOILoCo provides a powerful tool for de novo genome analysis of outcrossing species. Our data will enable genome-scale analyses of evolutionary processes among crops, weeds, and wild species within and beyond the Compositae, and will facilitate the identification of economically important genes from related species.
- Published
- 2016
49. The use of the Distress Thermometer and the Hospital Anxiety and Depression Scale for screening of anxiety and depression in Italian women newly diagnosed with breast cancer
- Author
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Civilotti, Cristina, Acquadro Maran, Daniela, Santagata, Francesca, Varetto, Antonella, and Stanizzo, Maria Rosa
- Published
- 2020
- Full Text
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50. Comparing Physician and Patient Perspectives on Prophylactic Treatment with BAY 94-9027 for Severe Haemophilia A: A Post Hoc Analysis
- Author
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Lalezari, Shadan, Acquadro, Michaël, de Bock, Elodie, Lambert, Jérémy, and Simpson, Mindy L.
- Published
- 2020
- Full Text
- View/download PDF
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