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This paper reports hepatitis C virus (HCV) prevalence, genotypes and phylogenetic characteristics in 95 haemophilic Tunisian patients. The studied population included 3 groups of patients according to their date of birth: before 1985 when inactivation procedures for clotting factors was introduced, between 1985 and 1994 when systematic anti-HCV screening of Tunisian blood donors was introduced and after this date. HCV infection was assessed by serological and molecular commercial tests. Genotypes were determined using the INNO-LiPA HCV test and by partial sequencing in the NS5b genomic region. Phylogenetic analyses were performed by comparing NS5b sequences of Tunisian haemophiliacs to published sequences. HCV infection was detected in 50.5% of cases with a significant decrease according to age. Subtype la was the most prevalent followed by subtype 1b (52.6% vs 44.7%); it was more frequent among haemophiliacs born before 1985. NS5b sequences were different from those obtained from non-haemophilic Tunisian patients and showed nucleic affiliation with HCV isolates from the USA. These findings suggest an infection through clotting factors imported to Tunisia and frequently manufactured from US blood donors. In contrast, subtype 1b showed approximately the same distribution among patients born before and after 1985; NS5b sequences from haemophiliacs were randomly distributed among other Tunisian sequences, favouring a transmission through cryoprecipitates prepared from Tunisian blood donors.

This study documents the changes in the Land Use/Land Cover (LULC) in the region of saline lakes in north Tunisia, Sahara Desert. Remote sensing data are a valuable data source in monitoring LULC in lacustrine landscapes, because variations in the extent of lakes are visible from space and can be detected on the images. In this study, changes in LULC of the salt pans of Tunisia were evaluated using a series of 12 Landsat 8-9 Operational Land Imager (OLI) and Thermal Infrared (TIRS) images. The images were processed with the Geographic Resources Analysis Support System (GRASS) Geographic Information System (GIS) software. The study area included four salt lakes of north Tunisia in the two regions of the Gulf of Hammamet and Gulf of Gabès: (1) Sebkhet de Sidi el Hani (Sousse Governorate), (2) Sebkha de Moknine (Mahdia Governorate), (3) Sebkhet El Rharra and (4) Sebkhet en Noual (Sfax). A quantitative estimate of the areal extent analysed in this study is 182 km × 185 km for each Landsat scene in two study areas: Gulf of Hammamet and Gulf of Gabès. The images were analysed for the period 2017–2023 on months February, April and July for each year. Spatio-temporal changes in LULC and their climate–environmental driving forces were analysed. The results were interpreted and the highest changes were detected by accuracy assessment, computing the class separability matrices, evaluating the means and standard deviation for each band and plotting the reject probability maps. Multi-temporal changes in LULC classes are reported for each image. The results demonstrated that changes in salt lakes were determined for winter/spring/summer months as detected changes in water/land/salt/sand/vegetation areas. The accuracy of the classified images was evaluated using pixel rejection probability values, which were filtered out using the 'r.mapcalc' module of GRASS GIS. The confidence levels were computed and visualised with a series of maps along with the error matrix and measured convergence level of classified pixels. This paper contributes to the environmental monitoring of Tunisian landscapes and analysis of climate effects on LULC in landscapes of north Africa. [ABSTRACT FROM AUTHOR]

Little is known about the distribution of hepatitis C virus (HCV) genotypes among people who inject drugs (PWID) in North African countries, including Tunisia. This study aims to describe HCV genotypes circulating among Tunisian PWID. A cross-sectional study was conducted, and 128 HCV-positive PWID were recruited between 2018 and 2019 from community-based harm reduction centers. After informed consent, sociodemographic characteristics and risk behavior data were obtained using an interviewer-administrated questionnaire. Blood samples were collected for further serological and molecular testing. Overall, five women and 123 men were included. The median age was 39.5 years. The majority of PWID (56.3%) had less than a secondary level of education, were single (57%), were unemployed (65.6%), were incarcerated at least once (93.0%), and had a history of residency in at least one foreign country (50.8%). During the previous 12 months, 82.0% reported having reused syringes at least once, 43.8% shared syringes at least once, while 56.2% had at least one unprotected sexual relation, and 28.1% had more than two different sexual partners. Tattooing was reported among 60.2%. All positive results for HCV-infection by rapid testing were confirmed by enzyme-linked immunosorbent assay (ELISA). HCV-RNA was detectable in 79.7%. Genotyping showed a predominance of genotype 1 (52%) followed by genotype 3 (34%) and genotype 4 (10%). Four patients (4%) had an intergenotype mixed infection. Subtyping showed the presence of six different HCV subtypes as follows: 1a (53.2%), 1b (6.4%), 3a (33.0%), 4a (3.2%), and 4d (4.3%). This is the first study describing circulating HCV genotypes among PWID in Tunisia. The distribution of HCV genotypes is distinct from the general population with a predominance of subtypes 1a and 3a. These findings can be used to guide national efforts aiming to optimize the access of PWID to relevant HCV prevention and treatment measures including pangenotypic regimens for patients infected with HCV genotype 3. [ABSTRACT FROM AUTHOR]

With the introduction of direct-acting antiviral treatment (DAA), Tunisia has committed to achieving the international goal of eliminating viral hepatitis. Because the specific DAA prescribed depends on viral genotype, viral genotyping remains of great importance. The aim of the present study was to outline the trends in the distribution of HCV genotypes from 2002 to 2017 in the Tunisian general population in order to guide authorities towards the most appropriate therapeutic strategies for preventing HCV infection. A total of 2532 blood samples were collected over a 16-year period and from all regions of Tunisia. Genotyping showed that genotype 1 (subtype 1b) was the most prevalent genotype in the country (n = 2012; 79.5%), followed by genotype 2 (n = 339; 13.3%). Genotypes 3, 4 and 5 were detected in 4.8%, 2.2% and 0.1% of the country's population, respectively. Mixed infections with different HCV genotypes were detected in 0.1% of the population (one case each of genotypes 1b + 4, 1b + 2 and 2 + 4). Interestingly, a significant increase in genotypes 2, 3 and 4 was observed over time (p = 0.03). Sixteen different subtypes were detected over the study period, most of which were subtypes of genotype 2, and some of these subtypes appeared to be new. Patients infected with genotypes 1a, 3 and 4 were significantly younger than those infected with genotypes 1b and 2 (p < 0.01). Furthermore, genotypes 1b and 2 were detected more often in women than men, while genotypes 1a and 3 were detected mostly in men (P < 0.01). Our study confirms a large predominance of genotype1/subtype1b in Tunisia and shows a significant increase in the prevalence of other genotypes over time. These findings reinforce the need for an additional HCV genotype survey to improve the design of treatment strategies in Tunisia. [ABSTRACT FROM AUTHOR]

The occurrence of the fragile cockle Fulvia fragilis (Forsskål in Niebuhr, 1775) in Libyan coastal waters (south-eastern Mediterranean Sea) is reported here for the first time based on the collection of twenty-nine live specimens from the shoreline in close vicinity to Tripoli Harbour, situated to the west of the country. The present record fills a gap in the geographic range of F. fragilis - its occurrence is already documented from the neighbouring territories of Egypt, Italy, Malta, and Tunisia. Although there are no certainties regarding the precise arrival date of this non-native bivalve in Libyan coastal waters, its presence within the environs of Tripoli Harbour might allude to its facilitated spread through ballast water from commercial shipping activity. [ABSTRACT FROM AUTHOR]

The aim of this survey was to study the cover and the composition of macroepiphytic species on the leaves of Posidonia oceanica in the east of Tunisia. Surveys were conducted in December 2009 (winter period), March (spring period) and August 2010 (summer period) in a fringing reef located in Chebba. At each sampling date, 15 adult leaves were randomly collected and divided into basal and apical parts. The inner face of each part was examined with ocular glasses and microscope to estimate species cover by orthogonal projection. PERMANOVA and ANOSIM were used to test for differences of cover between sampling dates and leaf parts. SIMPER, cluster analysis, and PCA were used to ordinate species assemblages. Comparison of epiphytic cover along leaf blades showed significant differences for all groups, except cyanophycea, with high cover of hydrozoans and bryozoans in the basal part and high cover of algae in the apical part. The species composition and cover also vary with sampling date; minimum values were detected in December and the epiphytic community was composed of a few pioneer species, whereas maximum epiphytic cover values were registered in August, with the epiphytic community being composed of a more mature and more diverse community, termed 'climax'. The main regulatory factors for this distribution are discussed. [ABSTRACT FROM AUTHOR]

The aim of this work is to study the temporal dynamics of rhizome epiphytes and sessile animals living on the rhizomes of the seagrass Posidonia oceanica in the east of Tunisia. Surveys were conducted in October 2009, and in January, April and August 2010 on a fringing reef located in Chebba. Rhizomes were sampled by SCUBA diving at three stations. Samples were examined with a microscope to estimate the cover of macroinvertebrate and macroalgal organisms on the top 10 cm of each rhizome. Results revealed a high diversity of epiphytes on P. oceanica rhizomes with a dominance of red and brown algae, ascidians, and bryozoans. Distinct temporal changes were observed in Oued Lafrann, with a high January cover (winter period) for all groups. These winter increases can be attributed to: (i) the low phenological parameters of P. oceanica in winter that reduce the effects of shading, (ii) life cycles of the epiphytes and invertebrates, (iii) water motion and (iv) grazing. [ABSTRACT FROM AUTHOR]

Neogoniolithon brassica-florida (encrusting rhodobionta) is generally reported as a veneering coral community along the wave-beaten rocky coast of the Mediterranean Sea. Its presence in the hyperhaline lagoon of Bahiret el Bibane, situated in SE Tunisia, takes on particular importance because of its extension. It constitutes a reef formation 14 km long developing on both sides of the sea inlet. The building of this ''natural monument'' seems to be the result of an evolutionary series. The aim of this study was to investigate the current status of this reef, comparing it to 30 years ago. The current extension of the Neogoniolithon brassica-florida reef appears to be much reduced from that reported 30 years ago, indicating a regression of 26%. Four different phases leading to the reef building were also identified. [ABSTRACT FROM AUTHOR]

Abstract: Mapping marine biocenoses is an efficient method for providing useful data for the management and conservation of Mediterranean lagoons. Fused images from two satellites, SPOT 5 and IKONOS, were tested as management tools for identifying specific ecosystems in the El Bibane lagoon, situated in southern Tunisia near the Libyan border. The objectives of this study were to provide a precise map of the entire El Bibane lagoon using fused images from SPOT 5 and to compare fused images from SPOT 5 and IKONOS over a test-area. After applying a supervised classification, pixels are automatically classified in four classes: low seagrass cover, high seagrass cover, superficial mobile sediments and deep mobile sediments. The maps of the lagoon revealed and confirmed an extremely wide distribution of seagrass meadows within the lagoon (essentially Cymodocea nodosa; 19 546ha) and a large area of mobile sediments more or less parallel to the shore (3 697ha). A direct comparison of overall accuracy between SPOT 5 over the entire area, SPOT 5 over the test-area and IKONOS over the test-area revealed that these tools provided accurate mapping of the lagoon environment (83.25%, 85.91% and 73.41% accuracy, respectively). The SPOT 5 images provided greater overall accuracy than the IKONOS image, but did not take into account the heterogeneous spatial structure of the seagrasses and sediments present in the lagoon environment. Although IKONOS imagery provided lower overall accuracy than SPOT 5, it proved a very useful tool for the mapping of heterogeneous structures as it enabled the patchiness of formations to be better taken into account. The use of SPOT 5 and IKONOS fused images appears to be very promising for completing the mapping of lagoons in other regions and countries of the Mediterranean Sea. [Copyright &y& Elsevier]