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New regionalism encompasses a diversity of approaches to address regional planning problems. Within Australia, the Great Barrier Reef Water Quality Protection Plan was developed to enhance water quality within the World Heritage-listed Great Barrier Reef, and the plan gave responsibility to regional, natural resource management bodies to undertake several actions. This paper evaluates these initiatives in the light of the emerging theory of new regionalism and highlights six main lessons: up-scaling of the catchment approach to a reef-wide approach is essential in order to improve water quality, but must be complemented by cross-regional collaboration; new governance and institutional arrangements and strengthened partnerships must be effectively integrated; culture and history are important in determining the most effective management approaches; pilot projects must move to comprehensive and strategic implementation; science is important but needs to incorporate other branches of knowledge; and economic incentives are important in encouraging the implementation of best practices, but delivery needs to be flexible. We conclude that the new regional approach is appropriate for addressing complex, multi-scale problems such as water quality, and has incorporated several key principles of new regionalism, but that the process must move quickly to a higher level of commitment and application. [ABSTRACT FROM AUTHOR]

Abstract: Tropical cyclones affect storm-dominated sediment transport processes that characterise Holocene shelf deposits in many shelf environments. A summary of cyclone-associated deposits in the Great Barrier Reef published by Larcombe and Carter [2004. Cyclone pumping, sediment partitioning and the development of the Great Barrier Reef shelf system: a review. Quaternary Science Reviews 23, pp. 107–135 indicates a pervasive northwards orientation of deposits on the lee side of reefs and other obstacles. In this paper, we describe the geomorphology of reef talus deposits found in the Gulf of Carpentaria and Arafura Sea, Australia, that we attribute to tropical cyclones. The orientation of these deposits is also indicative of a consistent, along-coast transport pathway. The deposits are located on the leeward side of submerged coral reefs; they are up to 10m in thickness, comprised of re-worked carbonate sand and gravel and radiocarbon dating indicates that they are of Holocene age. An explanation for the consistent along-coast cyclone transport pathway is presented based on previously published hydrodynamic modelling results. These models illustrate how currents generated by the passage of a cyclone are asymmetric in plan view, such that stronger flows are generated between the eye of the cyclone and the coast. The result of the passage of many cyclones over geologic timescales is a net along-coast sediment transport pathway located on the inner- to mid-shelf, possibly extending over the entire length of northern Australia''s coastline. This process provides an explanation for the observed sediment transport patterns on modern tropical continental shelves, as well as a basis for the interpretation of ancient tropical shelf deposits. [Copyright &y& Elsevier]

Abstract: Coastal and reef policy decisions and management programs require research to address current and emerging issues, to detect trends in key environmental variables and to help evaluate the effectiveness of management strategies. The technology and infrastructure components are now well developed and understood, but the useful application of sensor network data and efficient delivery of real-time information still needs improvement to better incorporate management needs and priorities. This paper aims to contribute to the current understanding of the adoption of wireless technology in research and practice, by identifying the main drivers and barriers to the adaptive deployment of an environmental sensor network along the Great Barrier Reef coast. Specifically, it addresses the extent to which the deployment of sensor networks and the delivery of real-time data can best suit managers’ and decision makers’ needs by providing timely and useful spatial data. Study findings indicate that, although researchers and managers ask significantly different questions requiring real-time spatial data, there is great potential and interest from both science and management for continuous automatic monitoring of environmental parameters. Some of the key research and management needs that the sensor network technology should address include measuring water (marine) quality at biological monitoring sites, water circulation patterns and flood plume water quality, gathering long-term data on turbidity, photosynthetically active radiation and chlorophyll a, and developing uniform standards for the provision of data to networks. [Copyright &y& Elsevier]

Many coastal and marine ecosystems around the world are under increasing threat from a range of anthropogenic influences. The management of these threats continues to present ongoing challenges, with many ecosystems increasingly requiring active restoration to support or re-establish the ecosystem's biological, cultural, social and economic values. The current condition of Australia's Great Barrier Reef (GBR) and its threats, including water quality, climate change and the loss of wetlands, causing the continuing decline in the GBR's ecological condition and function, has received global attention. Activities aimed at halting these declines and system restoration have been underway for over forty years. These activities are challenging to implement, and much has been learnt from their various outcomes. This paper considers the GBR and the associated management activities as a case study for regional scale catchment to reef management. It summarises the management approaches to date, describing the key role that science, policy and community have played in underpinning various investments. Four criteria for success are proposed: the lead role of the community, the need for a systems approach, the need for targeted, cost-effective and sustainable long-term investment, and importantly, building knowledge and maintaining consensus and political commitment. • Activities have intended to halt the decline and restore values of the GBR for decades. • The history of GBR catchment to reef provides a foundation for learning. • Criteria for success are identified to improve the condition and resilience of the GBR. • Integrated socio-ecological approaches will facilitate successful management. • Community leadership, long-term commitment and a solid knowledge base are essential. [ABSTRACT FROM AUTHOR]

A spatially-structured simulation model of the metapopulation dynamics of common coral trout (Plectropomus leopardus) and their harvest by line fishing was developed to evaluate potential management options on the Great Barrier Reef (GBR), including closing areas to fishing. The effects of line fishing simulator (ELFSim) incorporates a spatially-structured model of the life-history of common coral trout, including larval dispersal, harvest by multiple fishing sectors (commercial, charter and recreational), and a range of mechanisms for regulating harvest. The model is designed to allow considerable flexibility in biological and fishery dynamics, to be portable to contexts other than the GBR, and to be modular to allow comparison of different implementations of biological and harvest model components. In this paper, we describe the details of the model and discuss its utility as a tool for evaluating fishery management strategies in the context of diverse stakeholder expectations. We illustrate a simple application by changing the rate at which larvae settle on the reef from which they were spawned, under a range of spatial closures and a scenario of steadily increasing fishing effort. The results identify the conditions under which a “larval subsidy effect” may be important to the performance of fishery management strategies. This effect was manifest as increased catches outside of areas closed to fishing when larvae were freely exchanged among reefs compared to when larval exchange was diminished or absent. [Copyright &y& Elsevier]

Abstract: Dr Jack Handyside Barnes (1922–1985) was one of the small and elite group of Pacific marine toxinologists whose work was characterised by an uncompromising rugged persona, a focussed resolve to solve challenging problems of human clinical envenomation, and who conducted curiosity-driven research under conditions of scientific isolation. He was a pioneering advocate for the preservation of marine heritage, particularly that of the Great Barrier Reef. A former military commando who later became a general medical practitioner with extensive surgical and obstetric skills, in 1947 he was appointed the Medical Superintendent of Thursday Island in the Torres Strait. Later (from January 1953), he worked indefatigably as a general medical practitioner in Cairns, in tropical North Australia. For four decades (1945–1985), Jack Barnes undertook detailed laboratory, clinical and field research into invertebrate envenomation, particularly medusan toxinology. In 1960 he discovered the species responsible for the Irukandji syndrome, a small carybdeid named Carukia barnesi in his honour. He invented the research technique for the extraction of venom from the world''s most venomous creature, the Pacific box Jellyfish, Chironex fleckeri. By 1960, he had published taxonomic details of nematocyst structure and clinical envenomation details consequent upon stings by Physalia, Cyanea, Chironex, Chiropsalmus and Carukia. This paper is a précis of the chronology of his life, contributions and influence. [Copyright &y& Elsevier]

The tourism literature offers a number of different themes related to defining and understanding the long stay, independent travel of younger people often, referred to as backpacking. This paper focuses on the two major themes of differences between backpackers and other tourists, and change over time in backpacking, through an examination of survey data collected from tourists to Australia's Great Barrier Reef in 1996, 2001 (prior to the event of September 11) and in 2002 (prior to the Bali Bombing). Backpackers were compared to Other Younger Travellers at each of these three times on a number of variables including travel party, motivations, type of reef trip chosen, and satisfaction. The results supported three main conclusions. Firstly, Backpackers differed from Other Younger Travellers on a number of variables and they retain some of these differences over time. Secondly, both groups changed over time, reflecting impacts of changes in international travel and contexts. Finally, although significant differences continued to exist between the two groups in each time period, over time tourists in the Other Younger Travellers group became more like Backpackers. The study concludes that the concept of backpacking as a rite de passage is worthy of further consideration and research attention. [ABSTRACT FROM AUTHOR]

Abstract: The cause(s) of primary outbreaks of the coral-eating crown-of-thorns starfish (Acanthaster planci) are still subject to scientific controversy. The possibility of primary outbreaks being linked to terrestrial runoff has been postulated a number of times, suggesting that enhanced nutrient supply is critical for enhanced A. planci larval development. This paper examines the evidence for such a cause, focussing particularly on the Great Barrier Reef (GBR). Nutrient discharges from rivers have increased at least four-fold in the central GBR over the last century, and concentrations of large phyto-plankton (>2μm) of the inshore central GBR shelf in the wet season when A. planci larvae develop, is double that of other places and times. Larval development, growth and survival increase almost ten-fold with doubled concentrations of large phyto-plankton. This and other lines of evidence suggest that frequent A. planci outbreaks on the GBR may indeed be a result of increased nutrient delivery from the land. [Copyright &y& Elsevier]

Abstract: This paper presents a multi-criteria based tool for assessing the relative impact of diffuse-source pollution to the Great Barrier Reef (GBR) from the river basins draining into the GBR lagoon. The assessment integrates biophysical and ecological data of water quality and pollutant concentrations with socio-economic information pertaining to non-point source pollution and (potential) pollutant impact. The tool generates scores for each river basin against four criteria, thus profiling the basins and enabling prioritization of management alternatives between and within basins. The results support policy development for pollution control through community participation, scientific data integration and expert knowledge contributed by people from across the catchment. The results specifically provided support for the Reef Water Quality Protection Plan, released in October 2003. The aim of the plan is to provide a framework for reducing discharge of sediment, nutrient and other diffuse-source loads and (potential) impact of that discharge and for prioritising management actions both between and within river basins. [Copyright &y& Elsevier]

Abstract: Along the tropical coastline of the Great Barrier Reef (GBR) region, little is known to date about submarine groundwater discharge (SGD) into the near-shore ocean. In an oceanographic sense, SGD consists of freshwater flow from land as well as seawater circulated through sediments. Recent radiochemical and geophysical studies, using the tracer 222Rn and apparent ground conductivity respectively, provide evidence for SGD to occur in a variety of hydrogeological settings. In this paper, a non-quantitative overview of different settings of SGD in the region is presented: (1) recirculation of seawater through animal burrows in mangrove forests, (2) freshwater SGD from unconfined aquifers as a narrow coastal fringe of freshwater along Wet Tropics beaches, (3) SGD from coastal dune systems in form of localised freshwater springs in the intertidal zone, (4) inner-shelf SGD from confined submarine aquifer systems comprised of riverine paleochannels incised into the shelf. [Copyright &y& Elsevier]

The carbon isotope 13C is commonly used to attribute the last deglacial atmospheric CO2 rise to various processes. Here we show that the growth of the world's largest reef system, the Great Barrier Reef (GBR), is marked by a pronounced decrease in δ13C in absolutely dated fossil coral skeletons between 12.8 and 11.7 ka, which coincides with a prominent minimum in atmospheric δ13CO2 and the Younger Dryas. The event follows the flooding of a large shelf platform and initiation of an extensive barrier reef system at 13 ka. Carbon cycle simulations show the coral δ13C decrease was mainly caused by the combination of isotopic fractionation during reef carbonate production and the decomposition of organic land carbon on the newly flooded shallow‐water platform. The impacts of these processes on atmospheric CO2 and δ13CO2, however, are marginal. Thus, the GBR was not contributing to the last deglacial δ13CO2 minimum at ∼12.4 ka. Plain Language Summary: An outstanding problem in our understanding of the global carbon cycle is unraveling the processes that were responsible for the rise of atmospheric CO2 during the last deglaciation (19,000–11,000 years ago). The carbon isotope 13C is commonly used to attribute the last deglacial atmospheric CO2 rise to various processes. The growth of tropical coral reefs has been controversially discussed in this context. To test this, well constrained reef carbonate records that span the last deglaciation are necessary, but such records are generally not available. Here we make use of a multi‐proxy coral reef record obtained at the Great Barrier Reef (GRB). The δ13C signal in the carbonate skeletons of fossil corals indicates a pronounced minimum that precisely coincides with a prominent minimum in atmospheric δ13CO2 as indicated by ice core records for the Younger Dryas cold period. We show, by carbon cycle simulations, that the GBR coral δ13C signal can be explained by changes in reef carbonate production and decomposition of organic land carbon on a newly flooded wide area. However, the simulations indicate that that the world's largest reef system in existence appears to have little effect on the last deglacial atmospheric CO2 and δ13CO2 changes. Key Points: Great Barrier Reef corals indicate pronounced decrease in skeletal stable carbon isotopes between 12.8 and 11.7 ka during Younger DryasEvent follows shelf flooding and barrier reef initiation at 13 ka and coincides with prominent atmospheric stable carbon isotope minimumCarbon cycle modeling reveals marginal impact of changes in reef carbonate production and land carbon decomposition on atmospheric carbon [ABSTRACT FROM AUTHOR]

Coral reefs have been found to produce the sulfur compound dimethyl sulfide (DMS), a climatically relevant aerosol precursor predominantly associated with phytoplankton. Until recently, the role of coral-reef-derived DMS within the climate system had not been quantified. A study preceding the present work found that DMS produced by corals had negligible long-term climatic forcing at the global–regional scale. However, at sub-daily timescales more typically associated with aerosol and cloud formation, the influence of coral-reef-derived DMS on local aerosol radiative effects remains unquantified. The Weather Research and Forecasting model coupled with Chemistry (WRF-Chem) has been used in this work to study the role of coral-reef-derived DMS at sub-daily timescales for the first time. WRF-Chem was run to coincide with an October 2016 field campaign over the Great Barrier Reef, Queensland, Australia, against which the model was evaluated. After updating and scaling the DMS surface water climatology, the model reproduced DMS and sulfur concentrations well. The inclusion of coral-reef-derived DMS resulted in no significant change in sulfate aerosol mass or total aerosol number. Subsequently, no direct or indirect aerosol effects were detected. The results suggest that the co-location of the Great Barrier Reef with significant anthropogenic aerosol sources along the Queensland coast prevents coral-reef-derived aerosol from having a modulating influence on local aerosol burdens in the current climate. [ABSTRACT FROM AUTHOR]

Tropical coral reefs are among the most sensitive ecosystems to climate change and will benefit from the more ambitious aims of the United Nations Framework Convention on Climate Change's Paris Agreement, which proposed to limit global warming to 1.5° rather than 2°C above pre‐industrial levels. Only in the latest Intergovernmental Panel on Climate Change focussed assessment, the Coupled Model Intercomparison Project phase 6 (CMIP6), have climate models been used to investigate the 1.5° warming scenario directly. Here, we combine the most recent model updates from CMIP6 with a semi‐dynamic downscaling to evaluate the difference between the 1.5 and 2°C global warming targets on coral thermal stress metrics for the Great Barrier Reef (GBR). By ~2080, severe bleaching events are expected to occur annually under intensifying emissions (shared socioeconomic pathway SSP5‐8.5). Adherence to 2° warming (SSP1‐2.6) halves this frequency but the main benefit of confining warming to 1.5° (SSP1‐1.9) is that bleaching events are reduced further to 3 events per decade. Attaining low emissions of 1.5° is also paramount to prevent the mean magnitude of thermal stress from stabilizing close to a critical thermal threshold (8 Degree Heating Weeks). Thermal stress under the more pessimistic pathways SSP3‐7.0 and SSP5‐8.5 is three to fourfold higher than the present day, with grave implications for future reef ecosystem health. As global warming continues, our projections also indicate more regional warming in the central and southern GBR than the far north and northern GBR. [ABSTRACT FROM AUTHOR]

Coral bleaching events continue to drive the degradation of coral reefs worldwide, causing a shift in the benthic community from coral- to algae-dominated ecosystems. Critically, this shift may decrease the capacity of degraded coral reef communities to maintain net positive accretion during warming-driven stress events (e.g., reef-wide coral bleaching). Here we measured rates of net ecosystem calcification (NEC) and net ecosystem production (NEP) on a degraded coral reef lagoon community (coral cover < 10 % and algae cover > 20 %) during a reef-wide bleaching event in February 2020 at Heron Island on the Great Barrier Reef. We found that during this bleaching event, rates of NEP and NEC across replicate transects remained positive and did not change in response to bleaching. Repeated benthic surveys over a period of 20 d indicated an increase in the percent area of bleached coral tissue, corroborated by relatively low Symbiodiniaceae densities (∼ 0.6 × 10 6 cm -2) and dark-adapted photosynthetic yields in photosystem II of corals (∼ 0.5) sampled along each transect over this period. Given that a clear decline in coral health was not reflected in the overall NEC estimates, it is possible that elevated temperatures in the water column that compromise coral health enhanced the thermodynamic favorability for calcification in other ahermatypic benthic calcifiers. These data suggest that positive NEC on degraded reefs may not equate to the net positive accretion of a complex, three-dimensional reef structure in a future, warmer ocean. Critically, our study highlights that if coral cover continues to decline as predicted, NEC may no longer be an appropriate proxy for reef growth as the proportion of the NEC signal owed to ahermatypic calcification increases and coral dominance on the reef decreases. [ABSTRACT FROM AUTHOR]

More accurate global volumetric estimations of shallow-water reef deposits are needed to better inform climate and carbon cycle models. Using recently acquired datasets and International Ocean Discovery Program (IODP) Expedition 325 cores, we calculated shallow-water CaCO3 volumetrics and mass for the Great Barrier Reef region and extrapolated these results globally. In our estimates, we include deposits that have been neglected in global carbonate budgets: Holocene Halimeda bioherms located on the shelf, and postglacial pre-Holocene (now) drowned coral reefs located on the shelf edge. Our results show that in the Great Barrier Reef alone, these drowned reef deposits represent ca. 135 Gt CaCO3, comparatively representing 16–20% of the younger Holocene reef deposits. Globally, under plausible assumptions, we estimate the presence of ca. 8100 Gt CaCO3 of Holocene reef deposits, ca. 1500 Gt CaCO3 of drowned reef deposits and ca. 590 Gt CaCO3 of Halimeda shelf bioherms. Significantly, we found that in our scenarios the periods of pronounced reefal mass accumulation broadly encompass the occurrence of the Younger Dryas and periods of CO2 surge (14.9–14.4 ka, 13.0–11.5 ka) observed in Antarctic ice cores. Our estimations are consistent with reef accretion episodes inferred from previous global carbon cycle models and with the chronology from reef cores from the shelf edge of the Great Barrier Reef. [ABSTRACT FROM AUTHOR]

The death of Charles Hugh Garbutt from a cone snail 'sting' inflicted at Hayman Island on the Great Barrier Reef marked both a family tragedy and an important moment in Australian medical and malacological history. However, aside from newspaper reports and the few witness statements given at the coronial inquiry, the events of that day in June 1935 and its immediate aftermath have never been critically evaluated. As memories of what happened have either faded or been partly distorted with the passage of time, the fatality today remains only a footnote in the history of studies on the Conidae and their complex, pharmaceutically-valuable venoms. The species involved, Conus geographus Linnaeus, 1758, is now recognised as the most dangerous to humans of the Conidae and responsible for most and possibly all recorded fatalities. After 85 years, the case is revisited using available evidence including newspaper reports, relevant scientific and popular literature, witness statements, archival documents and the actual specimen responsible for the fatality. While tragic and probably avoidable, the death, via its extensive coverage by the press, undoubtedly has helped to save lives by educating a public largely unaware of the dangers from something as seemingly harmless as a sea snail. It is also concluded that Charles Garbutt, when all factors are considered, was most unfortunate to have lost his life in the way that he did. For future cone envenomations it is recommended that photography (if possible) of the specimen involved would assist both in patient reassurance and medical treatment. [ABSTRACT FROM AUTHOR]

Water quality condition and trend are important indicators of the impact of land use on the environment, as degraded water quality causes unwelcome changes to ecosystem composition and health. These concerns extend to the sea, where discharges of nutrients, sediments and toxicants above natural levels are unwelcome, particularly when they drain to the Great Barrier Reef World Heritage Area and other coastal waters of Queensland. Sugarcane is grown in 26 major river catchments in Queensland, most in environmentally sensitive areas. This puts pressure on the Queensland Sugar Industry to manage the land in ways that have minimum adverse off-site impacts. Sugar researchers including CRC Sugar have been associated with water quality studies in North Queensland. These include investigations and reviews to assess the role of groundwater as a pathway for nitrate loss from canelands in the Herbert Catchment, to find causes of oxygen depletion in water (including irrigation runoff) from Ingham to Mackay, to use residues of superseded pesticides as indicators of sediment loss to the sea, and to assemble information on water quality pressure and status in sugar catchments. Key findings, plus information on input pressures are described in this paper, and areas of concern and opportunities discussed. [ABSTRACT FROM AUTHOR]

Presents a paper on gonad development and evidence of protogyny in the red-throat emperor Lethrinus (L.) miniatus on the Great Barrier Reef, Queensland. Concurrent degeneration of all oocytes and proliferation of spermatocysts near lamellae in transitional L. miniatus; Implications of the presence of spermatocysts in the females; Unusual characteristics of transitional L. miniatus.

Understanding of the pre-development, baseline denudation rates that deliver sediment to the Great Barrier Reef (GBR) has been elusive. Cosmogenic 10Be in sediment is a useful integrator of denudation rates and sediment yields averaged over large spatial and temporal scales. This study presents 10Be data from 71 sites across 11 catchments draining to the GBR: representing 80% of the GBR catchment area and provide background sediment yields for the region. Modern, short-term, sediment yields derived from suspended load concentrations are compared to the 10Be data to calculate an Accelerated Erosion Factor (AEF) that highlights denudation "hot-spots" where sediment yields have increased over the long-term background values. The AEF results show that 58% basins have higher modern sediment yields than long-term yields. The AEF is considered a useful approach to help prioritise on-ground investments in remediation and the additional measured empirical data in this paper will help support future predictive models. [ABSTRACT FROM AUTHOR]

The Reef 2050 Plan has identified a range of measures aimed at reducing end-of-catchment loads of sediment and nutrient and recognizes the role that freshwater wetlands may have in achieving this. However, quantitative information on the potential for tropical wetlands to filter agricultural runoff is scarce, so this paper describes a study that combines field data from a 10 ha wetland constructed on land previously used for sugar cane near Babinda, north Queensland with a water balance and denitrification model. During the 12-month monitoring period (from October 2017 to September 2018) we estimate that the nitrogen filtering capacity of the wetland was 52% (26% lost as gaseous denitrification from the water and soil, and 26% as sedimentation of particulate nitrogen, PN). The remaining nitrogen (48%) left in the drainage water and this emphasises the importance of the wetland hydrology in determining denitrification and filtering. The current estimates are highly variable, so we have also identified the key parameters that need to be measured in order to improve long-term wetland filtering capacity estimation. Babinda is in the Mulgrave-Russell catchment, where the Reef 2050 Water Quality Improvement Plan has set target reductions in DIN of 300 t and PN of 53 t by 2025. 10% of the DIN reduction target could be achieved from ~593 ha of wetland with the same mean denitrification properties as currently estimated for the Babinda wetland (i.e. 51 kg N ha−1 year−1). This amounts to 2.3% of the total sugarcane area in this catchment that, as wetland, would also remove 56% of the 2025 PN reduction target. • Combined water balance and denitrification modelling of a tropical wetland • Estimation of total nitrogen filtering in a constructed wetland • Clear demonstration of the importance of hydrology in wetland filtering • Identification of key parameters affecting wetland filtering • Potential contribution of wetlands to Reef water quality improvement targets [ABSTRACT FROM AUTHOR]

Water quality monitoring programs (WQMPs) are crucial for assessment of water quality in river basins where agricultural intensification and development raise concerns in freshwater and marine environments. WQMPs if supported by scientists and local communities, and if based on the knowledge needs of all stakeholders, can provide vital information supporting resource management actions. Our paper focuses on the transdisciplinary development and implementation of a community-led pilot WQMP for the Tully River basin, adjacent to the Great Barrier Reef (GBR). The community-led pilot WQMP was established to fill some knowledge gaps identified during development of the Tully Water Quality Improvement Plan (WQIP) and to provide opportunities for active stakeholder participation in the monitoring. Results indicated some water quality parameters (i.e. nitrates and total phosphorus) had higher than expected values and exceeded state water quality guidelines. Hence, the results provided an evidence base for freshwater quality objective development to conserve, protect and improve water quality conditions in this basin and GBR. Leadership of Indigenous people in the pilot WQMP recognizes their deep desire to improve water resources outcomes and to care for country and people. • Implementation of a pilot water quality monitoring plan for the Tully River basin, adjacent to the Great Barrier Reef • Evidence base for freshwater quality objective development to conserve, protect and improve water quality conditions • Lessons learned provide useful guidance for developing collaborative approaches for effective water resources management • Pilot WQMP may provide a useful template and may encourage greater acceptance and compliance of future management actions [ABSTRACT FROM AUTHOR]

To protect and improve water quality in the Great Barrier Reef, the Queensland Government's Reef 2050 Water Quality Improvement Plan targets that 90% of sugarcane, horticulture, cropping and grazing lands in priority areas be managed using best management practices for sediment, nutrient and pesticides by 2025. Progress towards this target is insufficient and variable across catchments and industries. The motivation to adopt improvements in management practices is heavily influenced by social, economic, cultural and institutional dimensions. In this paper we synthesise the literature on how these human dimensions influence decision making for land management practice and highlight where future investment could be focussed. We highlight that focussing on —1) investigating systems to support landholder decision making under climate uncertainty (risk); 2) generating a better understanding of the extent and drivers of landholder transaction cost; 3) understanding if there are competing 'right' ways to farm; and 4) improving understanding of the social processes, trust and power dynamics within GBR industries and what these means for practice change— could improve practice change uptake in the future. • Understanding human factors is essential for land practice change • Human factors include economic, social and cultural and macro institutional elements • These will affect trialling, adoption and dis-adoption of a practice [ABSTRACT FROM AUTHOR]

The Great Barrier Reef World Heritage Area (GBRWHA) in north eastern Australia spans 2500 km of coastline and covers an area of ~ 350,000 km2. It includes one of the world's largest seagrass resources. To provide a foundation to monitor, establish trends and manage the protection of seagrass meadows in the GBRWHA we quantified potential seagrass community extent using six random forest models that include environmental data and seagrass sampling history. We identified 88,331 km2 of potential seagrass habitat in intertidal and subtidal areas: 1111 km2 in estuaries, 16,276 km2 in coastal areas, and 70,934 km2 in reef areas. Thirty-six seagrass community types were defined by species assemblages within these habitat types using multivariate regression tree models. We show that the structure, location and distribution of the seagrass communities is the result of complex environmental interactions. These environmental conditions include depth, tidal exposure, latitude, current speed, benthic light, proportion of mud in the sediment, water type, water temperature, salinity, and wind speed. Our analysis will underpin spatial planning, can be used in the design of monitoring programs to represent the diversity of seagrass communities and will facilitate our understanding of environmental risk to these habitats. [ABSTRACT FROM AUTHOR]

Angiosperms have co‐evolved with animals over thousands of years leading to an array of mutualistic relationships. Passage of plant seeds through animal intestines leads to an important mutualism providing the animal with food and the plant with seed dispersal and enhanced germination. This phenomenon is well studied in terrestrial angiosperms, but there is less research in aquatic environments. We studied the effect of gut passage in marine mega‐herbivores (green sea turtles and dugongs) on seed germination for a common Australian seagrass, Zostera muelleri. We collected fecal samples likely to contain seeds, as well as seagrass seeds from plants at two coastal seagrass meadows in the central Great Barrier Reef World Heritage Area, Australia. Seeds collected from feces and plants were subjected to germination trials across different temperature treatments: low (19°C), medium (26°C), and high (32°C). We found excreted seeds had a significantly greater germination probability (two to four times greater) and germinated significantly faster (18–61% faster) than seeds from the plant. Excreted seeds which had not germinated at the end of the experiment were significantly less likely to be viable compared with seeds taken from the plant. Seeds released from the plant have a slow germination and low germination probability compared with excreted seeds, but retain a high percentage of seed viability. Our study is the first record of marine mega‐herbivores enhancing germination of Z. muelleri seeds. By transporting seeds to new locations and enhancing germination, these animals are important in seagrass resilience and connectivity among metapopulations. [ABSTRACT FROM AUTHOR]

Inshore marine seascapes support a diversity of interconnected habitats and are an important focus for biodiversity conservation. This study examines the importance of habitat attributes to fish assemblages across a mosaic of inshore habitats: coral reefs, rocky reefs, macroalgae beds and sand/rubble beds. Fishes and benthic habitats were surveyed at 34 sites around continental islands of the central Great Barrier Reef using baited remote underwater video stations (BRUVS). Species richness was influenced foremost by habitat type and also by structural complexity within habitat types. The most speciose assemblages occurred in coral and rocky reef habitats with high structural complexity, provided by the presence of coral bommies/overhangs, boulders and rock crevices. Nonetheless, macroalgae and sand/rubble beds also supported unique species, and therefore contributed to the overall richness of fish assemblages in the seascape. Most trophic groups had positive associations with complexity, which was the most important predictor for abundance of piscivorous fishes and mobile planktivores. There was significant differentiation of fish assemblages among habitats, with the notable exception of coral and rocky reefs. Species assemblages overlapped substantially between coral and rocky reefs, which had 60% common species, despite coral cover being lower on rocky reefs. This suggests that, for many species, rocky and coral substrates can provide equivalent habitat structure, emphasizing the importance of complexity in providing habitat refuges, and highlighting the contribution of rocky reefs to habitat provision within tropical seascapes. The results of this study support an emerging recognition of the collective value of habitat mosaics in inshore marine ecosystems. [ABSTRACT FROM AUTHOR]

Patterns of reproductive ontogeny in four species of coral reef wrasses (F: Labridae) Hemigymnus melapterus, Hemigymnus fasciatus, Cheilinus fasciatus and Oxycheilinus digramma were investigated. Populations of each species were sampled from two island groups of the central Great Barrier Reef (GBR), Australia, and from coral reefs in the central Philippines. These three sampling locations span 30° of latitude. The GBR and Philippine reefs experience biologically significant differences in water temperature, geography and human activity. The studied wrasses are effectively unfished in Australia but heavily fished in the Philippines. Gonad weights, histology and demographic data were obtained across the entire size and age range of H. melapterus, C. fasciatus and O. digramma from all locations. Analysis identified three processes of male recruitment: functional gonochorism and both forms of protogynous hermaphroditism, monandry and diandry. The expression of these distinct sexual ontogenies was locality dependent. Populations of H. melapterus, H. fasciatus, C. fasciatus and O. digramma on the GBR showed consistently uniform patterns of sexual ontogeny, with all species being exclusively monandric. H. melapterus, C. fasciatus and O. digramma in the Philippines displayed complex sexual ontogenies, with all species showing histological evidence of both diandry and functional gonochorism. Reproductive investment in gonadal tissue, and population sex structure, also differed between GBR and Philippine coral reefs. Philippine populations had substantially lower gonado‐somatic indices than populations on the GBR. Nonetheless, Philippine populations matured more rapidly and displayed a protracted timing of sex change over a large size and age range. Thus, mature females appeared earlier and persisted later into ontogeny in the Philippines than on GBR reefs. Protracted timing of sex change on Philippine reefs is likely linked to the presence of primary males in the population, which is known to reduce the strength of selection for mature females to undergo sex change and become male. Hypotheses based on social structure of fish populations, environmental factors and evolutionary history were developed to account for the different patterns of sexual ontogeny in the focal wrasses. [ABSTRACT FROM AUTHOR]

Topographic models provide a useful tool for understanding gully occurrence in the landscape but require reliable estimates of gully head drainage areas. Modern high‐resolution topography data (collected using structure from motion photogrammetry or light detection and ranging) is increasingly used for topographic studies of gullies, but little work has been done to assess the variability of gully head drainage area estimates using different methods. This study evaluated alternative approaches to using high‐resolution digital elevation models (DEMs) so that gully topographic models can be more readily applied to any area with suitably high‐resolution data. Specifically, we investigated the impact of single‐ or multiple‐direction flow routing algorithms, DEM hydrologic‐enforcement procedures and spatial resolution on gully head drainage area estimation. We tested these methods on a 40 km2 site centred on Weany Creek, a low‐relief semi‐arid landscape draining towards the Great Barrier Reef, Australia. Using a subroutine to separate gully heads into those with divergent or convergent flow patterns upslope, we found that divergent flow conditions occurred at half of 484 studied gullies. Drainage areas estimated by different flow routing algorithms were more variable in these divergent cases than for convergent cases. This variation caused a significant difference between topographic threshold parameters (slope b and intercept k) derived from single‐ or multiple‐direction flow routing algorithms, respectively. Different methods of hydrologic enforcement (filling or breaching) also affected threshold analysis, resulting in estimates of the exponent b being ~188% higher if the DEM was filled than if breached. The testing of the methods to date indicates that a finer resolution (≤2 m) DEM and a multiple‐direction flow routing algorithm achieve the most realistic drainage area estimates in low‐relief landscapes. For Weany Creek we estimated threshold parameters k = 0.033 and b = 0.189, indicating that it is highly susceptible to gully erosion. [ABSTRACT FROM AUTHOR]

Partially Protected Areas (PPAs) are a widely-used management tool, yet comparatively little is known about their effectiveness compared to more commonly studied No-Take Marine Reserves (NTMRs). Here, we examine the efficacy of two kinds of PPAs (with and without spearfishing) within the Great Barrier Reef Marine Park (GBRMP) that are subject to a range of fishing limitations, and assess their utility as a marine park zoning and fisheries management tool. Fish abundance, size, and habitat composition were compared inside PPAs and NTMRs on inshore reefs of the central GBR. Fish abundances were lower inside PPAs relative to adjacent NTMRs for primary fishing targets, with no detectable effects for secondary targets and non-targets, or for species richness. Fish assemblages differed amongst zones, but these variations were minor compared to regional variations in species composition. Partially Protected Areas supported 46%–69% of the relative abundance of total primary targets compared to adjacent NTMRs, with no evident increase in abundance in zones where spearfishing was prohibited. There were no reductions in the size of two key target species: coral trout (Plectropomus spp.) and stripey snapper (Lutjanus carponotatus) inside PPAs, and only stripey snapper had significant reductions in abundance inside PPAs compared to NTMRS. Habitat and biophysical characteristics (especially topographic complexity) were strong drivers of fish abundance, but the relative influence of zone was greater for target species compared to non-targets. This study provides novel data on PPAs and highlights their utility as a spatial management tool in contributing to conservation and fisheries management goals. [ABSTRACT FROM AUTHOR]

Temperate organisms are generally exposed to a more variable and cooler climate than tropical organisms, and are therefore expected to have broader thermal tolerance and a different thermal performance curve. This study investigated these hypotheses by comparing the thermal performance of two common tropical coral species found in the Great Barrier Reef with the two most common temperate coral species from the Mediterranean Sea. Photosynthesis rates, dark respiration rates, maximum PSII quantum yield (Fv/Fm) and electron transport rates (rETRm) were measured on coral fragments exposed to an acute temperature increase and decrease up to 5 °C above and below the average environmental seawater temperature. Dark respiration rates and Fv/Fm increased linearly with temperature, suggesting broad thermal tolerance. For photosynthesis and rETRm, the performance breadths were surprisingly similar between the tropical and temperate species. However, the thermal optimum for performance was generally below the local average temperature, and only coincided with the prevailing environmental temperature for one of the tropical species. The broad thermal tolerance for photosynthesis displayed in this study supports previous observations that corals can survive short periods of abnormally warm temperatures and suggests that corals adopt thermal generalist strategies to cope with temperature variation in the environment. Nevertheless, current mean temperatures are 10–30% above the thermal optimum for the species studied here, demonstrating that conditions are already pushing the boundaries of coral thermal tolerance. [ABSTRACT FROM AUTHOR]

Reef monitoring programmes often focus on limited sites, predominantly on reef slope areas, which do not capture compositional variability across zones. This study assessed spatial and temporal changes in hard coral cover at four hierarchical spatial scales. ~ 55,000, geo-referenced photoquadrats were collected annually from 2002 to 2018 and analysed using artificial intelligence for 31 sites across reef flat and reef slope zones on Heron Reef, Southern Great Barrier Reef, Australia. Trends in hard coral cover were examined at three spatial scales: (1) "reef scale", all data; (2) "geomorphic zone scale"—north/south reef slope, inner/outer reef flat; and (3) "site scale"—31 sites. Coral cover trajectories were also examined at: (4) "sub-site scale"—sub-division of sites into 567 sub-sites, to estimate variability in coral cover trajectories via spatial statistical modelling. At reef scale coral cover increased over time to 25.6 ± 0.4 SE % in 2018 but did not recover following disturbances caused by disease (2004–2008), cyclonic conditions (2009) or severe storms (2015) to the observed pre-disturbance level (44.0 ± 0.7 SE %) seen in 2004. At geomorphic zone scale, the reef slope had significantly higher coral cover than the reef flat. Trends of decline and increase were visible in the slope zones, and the southern slope recovered to pre-decline levels. Variable coral cover trends were visible at site scale. Furthermore, sub-site spatial modelling captured eight years of coral recovery that occurred at different times and magnitudes across the four geomorphic zones, effectively estimating variability in the trajectory of the reef's coral community. Derived spatial predictions for the entire reef show patchy coral recovery, particularly on the southern slope, and that recovery hotspots are distributed across the reef. These findings suggest that to fully understand and interpret coral decline or recovery on a reef, more accurate assessment can be achieved by examining sites distributed within different geomorphic zones to capture variation in exposure, depth and consolidation. [ABSTRACT FROM AUTHOR]

The Great Barrier Reef World Heritage Area in Queensland, Australia contains globally significant seagrasses supporting key ecosystem services, including habitat and food for threatened populations of dugong and turtle. We compiled 35 years of data in a spatial database, including 81,387 data points with georeferenced seagrass and species presence/absence, depth, dominant sediment type, and collection date. We include data collected under commercial contract that have not been publicly available. Twelve seagrass species were recorded. The deepest seagrass was found at 76 m. Seagrass meadows are at risk from anthropogenic, climate and weather processes. Our database is a valuable resource that provides coastal managers and the global marine community with a long‐term spatial resource describing seagrass populations from the mid‐1980s against which to benchmark change. We address the data issues involved in hindcasting over 30 years to ensure confidence in the accuracy and reliability of data included. [ABSTRACT FROM AUTHOR]

Crown-of-thorns starfish (Acanthaster spp.) is reported to have exceptional reproductive capacity, but this has been largely inferred based on the overall weight of gonads (and mostly for females), and there are limited estimates of the concentration of gametes within gametogenic tissues. This study quantified gamete concentrations for both male and female Pacific crown-of-thorns starfish (Acanthaster cf. solaris), collected on Australia's Great Barrier Reef in 2014–2019. Gamete concentrations varied greatly among female starfish (12,338–133,810 oocytes g−1), such that the estimated reproductive capacity ranged from < 1000 oocytes for the smallest (141 mm) individual up to 106 million oocytes for a 480-mm diameter female. Gamete concentrations were much more conserved for male starfish, and did not vary with size. Nonetheless, the total mass of gametogenic tissue increased with size, and fecundity of large males > 400-mm diameter approached 53 billion sperm. This study reaffirms that crown-of-thorns starfish have exceptional reproductive capacity, which is strongly size-dependent, but also varies greatly among individuals. Importantly, individual variation in reproductive output may be important in understanding for population irruptions of Acanthaster spp., and their concomitant effects on reef ecosystems. [ABSTRACT FROM AUTHOR]

Few studies have considered linkages of mobile predators across large spatial scales despite their significant and often critical role in maintaining ecosystem function and health. The bull shark (Carcharhinus leucas) is a large, widespread coastal predator capable of undertaking long-range movement, but there is still limited understanding of intra-regional differences in movement and habitat connectivity across latitudes within the same coastline. This study used acoustic telemetry data and network analyses to investigate long-range movements, residency patterns and seasonal habitat linkages of sub-adult and adult C. leucas along the east coast of Australia. Our results revealed that C. leucas tagged in Sydney Harbour were mainly present within this temperate estuary in summer and autumn; the rest of the year individuals were detected in tropical and subtropical habitats from southern and central Queensland. In contrast, the detection probability of C. leucas tagged in the Townsville Reefs (central Great Barrier Reef) peaked in spring, with a portion of the tagged population migrating south during the summer months. Differences in residency time between tagging locations were also detected, as all C. leucas tagged in Sydney Harbour were absent between June and November, but 35% of the tropical-reef tagged population remained resident year-round. Network analyses complemented these findings by revealing different seasonal habitat use between regions, thus highlighting complex seasonal-habitat linkages of C. leucas along the coast. Our findings support the hypothesis that the timing, duration, and drivers involved in the long-range movements and connectivity of sub-adult and adult C. leucas vary between latitudinal regions, most likely driven by the interaction between seasonal temperature changes, foraging and reproduction. [ABSTRACT FROM AUTHOR]

In March 2017, a category 4 cyclone, 'Cyclone Debbie', made landfall across the Great Barrier Reef (GBR) region of Australia. Drawing on the social amplification of risk framework and the concept of emotional stability, this research aims to provide insight into the perceptions of risk and individual responses to the disaster event using Twitter data, facilitating future analysis of social media messages during disaster events. This study uses Twitter data collected from the GBR region before, during and after Cyclone Debbie. Findings revealed changes in emotional stability across the stages of the cyclone. The findings suggested that statements revealing lower emotional stability were associated with amplified perceptions of risk, whilst increased emotional stability attenuated perceptions of risk. However, this was not the case for the characteristic 'empathy', which may have contributed to amplified perceptions of risk. Preparedness was also found to portray higher emotional stability characteristics. The findings have implications for future research analysing social media messages, as well as for disaster planning and response strategies. [ABSTRACT FROM AUTHOR]

The article focuses on the study "Conservation Objectives and Sea-Surface Temperature Anomalies in the Great Barrier Reef," conducted by Natalie C. Ban, Robert L. Pressey, and Scarla Weeks. Researchers have found evidence of the changes in the waters of Australia's Great Barrier Reef (GBR) as shown by the satellite measurement of sea surface temperatures. It says that the study aims to stimulate discussion on the aspects of the management of Green Zones and other protected areas.

Background: Coral reefs are among the most diverse and productive ecosystems on Earth. This success relies on the coral's association with a wide range of microorganisms, including dinoflagellates of the family Symbiodiniaceae that provide coral hosts with most of their organic carbon requirements. While bacterial associates have long been overlooked, research on these microorganisms is gaining traction, and deciphering bacterial identity and function is greatly enhancing our understanding of cnidarian biology. Here, we investigated bacterial communities in defensive tissues (acontia) of the coral model, the sea anemone Exaiptasia diaphana. Acontia are internal filaments that are ejected upon detection of an external threat and release toxins to repel predators. Results: Using culturing techniques and 16S rRNA gene metabarcoding we identified bacterial communities associated with acontia of four Great Barrier Reef-sourced E. diaphana genotypes. We show that bacterial communities are similar across genotypes, and dominated by Alteromonadaceae, Vibrionaceae, Rhodobacteraceae, and Saprospiraceae. By analyzing abundant amplicon sequence variants (ASVs) from metabarcoding data from acontia and comparing these to data from whole anemones, we identified five potentially important bacterial genera of the acontia microbiome: Vibrio, Sulfitobacter, Marivita, Alteromonas, and Lewinella. The role of these bacteria within the acontia remains uninvestigated but could entail assistance in defense processes such as toxin production. Conclusions: This study provides insight into potential bacterial involvement in cnidarian defense tissues and highlights the need to study bacterial communities in individual compartments within a holobiont. [ABSTRACT FROM AUTHOR]

When Australian physicist, Peter Ridd, lost his tenured position with James Cook University, he was called a 'whistleblower', 'contrarian academic' and 'hero of climate science denial'. In this article, we examine the events surrounding his dismissal to better understand the role of science communication in organised climate change scepticism. We discuss the sophistry of his complaint to locate where and through what processes science communication becomes political communication. We argue that the prominence of scientists and scientific knowledge in debates about climate change locates science, as a social sphere or fifth pillar in Hutchins and Lester's theory of mediatised environmental conflict. In doing so, we provide a model to better understand how science communication can be deployed during politicised debates. [ABSTRACT FROM AUTHOR]

Stream water quality is highly variable both across space and time. Water quality monitoring programmes have collected a large amount of data that provide a good basis for investigating the key drivers of spatial and temporal variability. Event-based water quality monitoring data in the Great Barrier Reef catchments in northern Australia provide an opportunity to further our understanding of water quality dynamics in subtropical and tropical regions. This study investigated nine water quality constituents, including sediments, nutrients and salinity, with the aim of (1) identifying the influential environmental drivers of temporal variation in flow event concentrations and (2) developing a modelling framework to predict the temporal variation in water quality at multiple sites simultaneously. This study used a hierarchical Bayesian model averaging framework to explore the relationship between event concentration and catchment-scale environmental variables (e.g. runoff, rainfall and groundcover conditions). Key factors affecting the temporal changes in water quality varied among constituent concentrations and between catchments. Catchment rainfall and runoff affected in-stream particulate constituents, while catchment wetness and vegetation cover had more impact on dissolved nutrient concentration and salinity. In addition, in large dry catchments, antecedent catchment soil moisture and vegetation had a large influence on dissolved nutrients, which highlights the important effect of catchment hydrological connectivity on pollutant mobilisation and delivery. [ABSTRACT FROM AUTHOR]

Copyright of Conservation Biology is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Copyright of Conservation Biology is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

There are concerns that reefs will transition from net calcifying to net dissolving in the near future due to decreasing calcification and increasing dissolution rates. Here, we present in situ rates of net ecosystem calcification (NEC) and net ecosystem production (NEP) on a coral reef flat using a slack‐water approach. Up until dusk, the reef was net calcifying in most months but shifted to net dissolution in austral summer, coinciding with high respiration rates and a lower aragonite saturation state (Ωarag). The estimated sediment contribution to NEC ranged from 8% to 21% during the day and 45% to 78% at night, indicating that high rates of sediment dissolution may cause the transition to reef dissolution. This late afternoon seasonal transition to negative NEC may be an early warning sign of the reef shifting to a net dissolving state and may be occurring on other reefs. Plain Language Summary: Positive rates of net ecosystem calcification and net ecosystem production are regarded as fundamental to the healthy functioning of coral reef ecosystems. In particular, positive ecosystem calcification is required to maintain the structural complexity that sustains many of the ecosystem functions of coral reefs. While most reefs are currently net calcifying, there is growing concern that increased pressures from rising sea surface temperatures and reductions in ocean surface pH (ocean acidification [OA]) will both depress coral calcification and increase dissolution. This could result in a shift of the whole ecosystem closer to a state of net dissolution before the end of the century. Here, we measured hourly afternoon rates of net ecosystem calcification and production on a coral reef flat over 10 months of the year. We found that the reef flat was already showing signs of net dissolution during certain times of the year (austral summer), which may become more extreme under global climate change. These temporary shifts in coral reef metabolism may provide insight into how the ecosystem will respond to future, more persistent periods of net dissolution driven by OA. Key Points: Ecosystem calcification and sediment calcification on Heron Island reef exceed dissolution such that net ecosystem calcification (NEC) remains largely positiveShallow, calcium carbonate sediments contribute 8%–12% of reef NEC during the day and at least 45%–78% of reef NEC at nightThe seasonal shifts to negative net ecosystem calcification before dusk may be a precursor of periodic net ecosystem dissolution [ABSTRACT FROM AUTHOR]

Australia's Great Barrier Reef is an iconic ecosystem that has been managed using a multi-use zoning plan over the last four decades. The Long-Term Monitoring Program (LTMP) of the Australian Institute of Marine Science (AIMS) is one of the world's longest running and most comprehensive coral reef monitoring programs, having documented the status and trends of Great Barrier Reef coral and reef fish assemblages over the last 32 years. The LTMP uses standard operating procedures to determine reef condition: broad-scale manta tow surveys of entire reef perimeters combined with intensive SCUBA surveys at permanently marked sites. This unique dataset has provided critical and reliable information about the status of the Great Barrier Reef by: defining and tracking spatio-temporal patterns in the distribution and abundance of fish and benthic assemblages; documenting disturbance regimes and their impacts upon reef status; and demonstrating the conservation benefits of the implementation and expansion of no-take marine reserves within the Marine Park. The long-term dataset, which is publicly available, has also been widely used to address fundamental ecological questions. Examples of key studies include: the role of herbivorous fishes in preventing phase shifts on coral reefs, and how heat stress has delayed coral recovery. Information from the LTMP directly informs management agencies about the status and trends of reef health through regular web-based reporting, direct consultation, peer-reviewed papers, conference presentations and provision of information for the five-yearly Outlook Report produced by the Great Barrier Reef Marine Park Authority for the Australian Government. • The LTMP has demonstrated the conservation benefits of large networks of no-take marine reserves. • LTMP data revealed increased resilience of coral reef assemblages to acute disturbances inside no-take marine reserves. • LTMP documented a loss of 50% of hard coral cover across the Great Barrier Reef (GBR) from the mid-1980s until 2012. • Phase shifts from coral dominated to algal dominated benthic communities are relatively rare on the GBR. • Thermal stress can slow coral recovery. [ABSTRACT FROM AUTHOR]

Protecting headwater streams is essential to minimise downstream sediment loads to rivers, estuaries, and oceans. This study analyses the gully and sheet erosion risk from a 33,000 ha agricultural development proposal in the Normanby catchment draining to the Great Barrier Reef (GBR) Lagoon, Australia. The slope‐area threshold for channel initiation was assessed for existing gully channel head locations using satellite images and a hydrologically enforced digital elevation model (SRTM). Thresholds were used to predict whether other stream lines (1:25k scale) were prone to gully incision under development. Results indicated that 430 km out of 1,200 km of streams were at risk of gullying, which could increase erosion by 2‐times, delivering 7,500 t yr−1 locally and 1,700 t yr−1 (worth A$1.8 million) to the GBR. Sheet erosion under agriculture is estimated (RUSLE) to increase by 13‐times from 0.12 to 1.5 t ha−1 yr−1, with 2,200 t yr−1 to streams and 900 t yr−1 (worth A$1 million) to the GBR. Buffering (±50 m) 560 km of headwater streams would cover 5,600 ha or 17% of the area. Precision agriculture using higher resolution topographic data (LiDAR) and improved slope‐area thresholds for gully erosion should be a minimum prerequisite for development, which would reduce but not eliminate increased sediment loads to the GBR. Forest clearance for agriculture is ongoing in Australia, but this first‐world country does not have effective policies or regulations to protect headwater streams or cumulative impacts to the World Heritage Great Barrier Reef, despite millions of dollars spent annually to reduce past land degradation. [ABSTRACT FROM AUTHOR]

Gully erosion can be a major disruptor to global fluvial sediment budgets. Gully erosion in the catchments of the Great Barrier Reef is attributed to ∼40 % of fine suspended sediment pollution to the freshwater and marine ecosystems downstream. Mitigating this source of erosion will have a lasting positive impact on the water quality of connected rivers and the receiving marine environment. Here we conduct a preliminary evaluation of the ability of intensive landscape-scale gully remediation to reduce suspended sediment and associated nutrient export from a catchment draining to the Great Barrier Reef. The gully remediation method was a first attempt, in the region, at investing a high level of financial (total cost of remediation AUD ∼90000) and logistical effort (e.g. intensive earthworks, including the establishment of an on-site quarry) to develop long-lasting erosion mitigation measures (i.e. regraded, compacted, and battered gully walls, rock armouring of banks and channel, and installation of rock check dams). A novel suspended sediment monitoring network, comprised of a suite of new and established automated monitoring methods capable of operating in remote environments, was used to evaluate the water quality of a remediated gully, a control gully, and their respective catchments. The recently developed pumped active suspended sediment (PASS) sampler optimised to sample ephemeral water flows was deployed in gully outlets and catchment runoff flow paths. This study demonstrates how the combination of low- and high-cost water quality monitoring techniques can be deployed in a configuration that ensures sample collection redundancy and complementary data collection between methods. Monitoring was conducted during two consecutive wet seasons and, thus, can only provide preliminary information. Monitoring over longer timescales (i.e. 5–10 years) will need to be carried out in order to validate the findings discussed herein. Samples collected from the remediated gully had significantly lower suspended sediment concentrations compared to the control gully, providing preliminary evidence that the remediation works were successful in stabilising erosion within the gully. Dissolved and particulate nutrient concentrations were also significantly lower in the remediated gully samples, consistent with the decreased suspended sediment concentrations. The novel combination of suspended sediment measurements from both the gully channels and overland flows in the surrounding gully catchments suggests that sediment and nutrients at the remediated site are likely sourced from erosion processes occurring within the catchment of the gully (at relatively low concentrations). In contrast, the primary source of suspended sediment and associated nutrients at the control gully was erosion from within the gully itself. This study demonstrates the potential of landscape-scale remediation as an effective mitigation action for reducing suspended sediment and nutrient export from alluvial gullies. It also provides a useful case study for the monitoring effort required to appropriately assess the effectiveness of this type of erosion control. [ABSTRACT FROM AUTHOR]

Grazing by all members of an herbivore community can act to structure the ecosystems they feed on. The outcome of this grazing pressure on the plant community also depends on the interaction between different herbivore groups that are present. We carried out a three-month multi-level field exclusion experiment to understand how different groups of herbivores act both individually and interactively to structure a subtropical seagrass meadow in the Great Barrier Reef. Megaherbivore grazing had the largest impact on this seagrass meadow, significantly reducing aboveground biomass and shoot height, whereas there was no measurable impact of meso- or macroherbivores on seagrass metrics or epiphyte biomass. Megaherbivores here grazed broadly across the meadow instead of targeting grazing in one area. The principal seagrass-herbivore dynamic in this meadow is that megaherbivores are the main group modifying meadow structure, and other grazer groups that are present in lower numbers do not individually or interactively structure the meadow. We demonstrate that herbivory by large grazers can significantly modify seagrass meadow characteristics. This has important implications when designing and interpreting the results of monitoring programs that seek to conserve seagrass meadows, the ecosystem services that they provide and the herbivores that rely on them. Collectively, our results and those of similar previous studies emphasize there is unlikely to be one seagrass and herbivory paradigm. Instead, for individual meadows, their unique species interactions and differences in biotic and abiotic drivers of seagrass change are likely to have a strong influence on the dominant seagrass-herbivore dynamic. [ABSTRACT FROM AUTHOR]

Exposure of marine life to low oxygen is accelerating worldwide via climate change and localized pollution. Mass coral bleaching and mortality have recently occurred where reefs have experienced chronic low oxygen events. However, the mechanistic basis of tolerance to oxygen levels inadequate to sustain normal functioning (i.e. hypoxia) and whether it contributes to bleaching susceptibility, remain unknown. We therefore experimentally exposed colonies of the environmentally resilient Acropora tenuis, a common reef-building coral from the Great Barrier Reef, to deoxygenation-reoxygenation stress that was aligned to their natural night-day light cycle. Specifically, the treatment involved removing the 'night-time O2 buffer' to challenge the inherent hypoxia thresholds. RNA-Seq analysis revealed that coral possess a complete and active hypoxia-inducible factor (HIF)-mediated hypoxia response system (HRS) homologous to other metazoans. As expected, A. tenuis exhibited bleaching resistance and showed a strong inducibility of HIF target genes in response to deoxygenation stress. We applied this same approach in parallel to a colony of Acropora selago, known to be environmnetally susceptible, which conversely exhibited a bleaching phenotype response. This phenotypic divergence of A. selago was accompanied by contrasting gene expression profiles indicative of varied effectiveness of their HIF-HRS. Based on our RNA-Seq analysis, we propose (a) that the HIF-HRS is central for corals to manage deoxygenation stress and (b) that key genes of this system (and the wider gene network) may contribute to variation in coral bleaching susceptibility. Our analysis suggests that heat shock protein (hsp) 70 and 90 are important for low oxygen stress tolerance and further highlights how hsp90 expression might also affect the inducibility of coral HIFHRS in overcoming a metabolic crisis under deoxygenation stress. We propose that differences in coral HIF-HRS could be central in regulating sensitivity to other climate change stressors--notably thermal stress--that commonly drive bleaching. [ABSTRACT FROM AUTHOR]

Identification of species' Biologically Important Areas (BIAs) is fundamental to conservation planning and species distribution models (SDMs) are a powerful tool commonly used to do this. Presence‐only data are increasingly being used to develop SDMs to aid the conservation decision‐making process. The application of presence‐only SDMs for marine species' is particularly attractive due to often logistical and economic costs of obtaining systematic species' distribution data. However, robust model validation is important for conservation management applications that require accurate and reliable species' occurrence data (e.g., spatially explicit risk assessments). This is commonly done using a random subset of the data and less commonly with fully independent test data. Here, we apply a spatial block cross‐validation (CV) approach to validate a MaxEnt presence‐only model using independent presence/absence survey data for a highly mobile, marine species (humpback whale, Megaptera novaengliae) in the Great Barrier Reef (GBR). A MaxEnt model was developed using opportunistic whale sightings (2003–2007) and then used to identify areas differing in habitat suitability (low, medium, high) to conduct a systematic, line‐transect, aerial survey (2012) and derive a density surface model. A spatial block CV buffering strategy was used to validate the MaxEnt model, using the opportunistic sightings as training data and independent aerial survey sightings data as test data. Moderate performance measures indicate MaxEnt was reliable in identifying the distribution patterns of a mobile whale species on their breeding ground, indicated by areas of high density aligned to areas of high habitat suitability. Furthermore, we demonstrate that MaxEnt models can be useful and cost‐effective for designing a sampling scheme to undertake systematic surveys that significantly reduces sampling effort. In this study, higher quality information on whale reproductive class (calf vs. non‐calf groups) was obtained that the presence‐only data lacked, while sampling only 18% of the GBR World Heritage Area. The validation approach using fully independent data provides greater confidence in the MaxEnt model, which indicates significant overlap with the main breeding ground of humpback whales and the inner shipping route. This is important when evaluating presence‐only models within certain conservation management applications, such as spatial risk assessments. [ABSTRACT FROM AUTHOR]

The Great Barrier Reef (GBR) is an internationally recognized and widely studied ecosystem, yet little is known about its sea surface temperature (SST) evolution since the Last Glacial Maximum (LGM) (~20 kyr BP). Here, we present the first paleo‐application of Isopora coral‐derived SST calibrations to a suite of 25 previously published fossil Isopora from the central GBR spanning ~25–11 kyr BP. The resultant multicoral Sr/Ca‐ and δ18O‐derived SST anomaly (SSTA) histories are placed within the context of published relative sea level, reef sequence, and coralgal reef assemblage evolution. Our new calculations indicate SSTs were cooler on average by ~5–5.5°C at Noggin Pass (~17°S) and ~7–8°C at Hydrographer's Passage (~20°S) (Sr/Ca‐derived) during the LGM, in line with previous estimates (Felis et al., 2014, https://doi.org/10.1038/ncomms5102). We focus on contextualizing the Younger Dryas Chronozone (YDC, ~12.9–11.7 kyr BP), whose Southern Hemisphere expression, in particular in Australia, is elusive and poorly constrained. Our record does not indicate cooling during the YDC with near‐modern temperatures reached during this interval on the GBR, supporting an asymmetric hemispheric presentation of this climate event. Building on a previous study (Felis et al., 2014, https://doi.org10.1038/ncomms5102), these fossil Isopora SSTA data from the GBR provide new insights into the deglacial reef response, with near‐modern warming during the YDC, since the LGM. Key Points: Near‐modern sea surface temperatures were reached during the Younger Dryas Chronozone on the Great Barrier ReefSea surface temperature, reef assemblage, and sea level data provide an overview of the evolution of the Great Barrier Reef since the LGMIsopora‐based sea surface temperature calibrations can be applied to fossil Isopora to understand environmental change on coral reefs [ABSTRACT FROM AUTHOR]

Australian and Queensland Government's Reef 2050 Water Quality Improvement Plan has set targets for improving the water quality entering the Great Barrier Reef lagoon. Given the large public investment and the deficit of data linking on-farm land management to changes in environmental outcomes, there is a need for a robust and efficient methods of quantifying links between land management and water quality. This paper explores a pragmatic approach to making this link using available data. We demonstrate that a simple parameterisation process is suitable for estimating hydrology and water quality across a wide range of land uses and management practices in agricultural landscapes. However, a manually calibrated model may still require the analysis of parameters to reduce error variances and evaluate uncertainties. Confidence in estimating hydrology and water quality in descending order is: runoff, sediment, nitrogen, phosphorous, and pesticide losses, reflecting the availability of data and inherent error propagation. • A pragmatic modelling by Howleaky is suitable to link management to water quality. • A manually calibrated model may still require a reduction in error variances. • Data availability and inherent error propagation determined confidence in modelling. [ABSTRACT FROM AUTHOR]

The Great Barrier Reef is a UNESCO World Heritage Area that has been assessed as having a very poor outlook and needing urgent intervention. The eReefs hydrodynamic-biogeochemical models are used to complement monitoring, facilitate data interpretation and support policy decisions. Management and policy for the Great Barrier Reef are politically contentious, so a high standard of model evaluation is required. We report the application of a recently-developed four-level "CSPS" (Concept/State/Process/System) model evaluation framework to the eReefs biogeochemical model. The framework considers: Level 0, conceptual evaluation; Level 1, simulated state variables; Level 2, process rates; and Level 3, system-level patterns and emergent properties. This paper is the first complete application of this model assessment framework. It highlights both strengths and weaknesses of the eReefs biogeochemical model that might not have been apparent from a traditional model evaluation. The framework can be applied to evaluation of any complex, process-based numerical model. • In politically-contentious contexts, models require a high standard of assessment. • We demonstrate the four-level (Concept/State/Process/System) assessment framework. • The performance of the eReefs marine models is assessed. • The approach highlights strengths and weaknesses of the models. • Emergent properties are particularly useful to enhance model assessment. [ABSTRACT FROM AUTHOR]