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Fungi are among the most diverse and ecologically important kingdoms in life. However, the distributional ranges of fungi remain largely unknown as do the ecological mechanisms that shape their distributions 1,2 . To provide an integrated view of the spatial and seasonal dynamics of fungi, we implemented a globally distributed standardized aerial sampling of fungal spores 3 . The vast majority of operational taxonomic units were detected within only one climatic zone, and the spatiotemporal patterns of species richness and community composition were mostly explained by annual mean air temperature. Tropical regions hosted the highest fungal diversity except for lichenized, ericoid mycorrhizal and ectomycorrhizal fungi, which reached their peak diversity in temperate regions. The sensitivity in climatic responses was associated with phylogenetic relatedness, suggesting that large-scale distributions of some fungal groups are partially constrained by their ancestral niche. There was a strong phylogenetic signal in seasonal sensitivity, suggesting that some groups of fungi have retained their ancestral trait of sporulating for only a short period. Overall, our results show that the hyperdiverse kingdom of fungi follows globally highly predictable spatial and temporal dynamics, with seasonality in both species richness and community composition increasing with latitude. Our study reports patterns resembling those described for other major groups of organisms, thus making a major contribution to the long-standing debate on whether organisms with a microbial lifestyle follow the global biodiversity paradigms known for macroorganisms 4,5 ., (© 2024. The Author(s).)

Global biodiversity gradients are generally expected to reflect greater species replacement closer to the equator. However, empirical validation of global biodiversity gradients largely relies on vertebrates, plants, and other less diverse taxa. Here we assess the temporal and spatial dynamics of global arthropod biodiversity dynamics using a beta-diversity framework. Sampling includes 129 sampling sites whereby malaise traps are deployed to monitor temporal changes in arthropod communities. Overall, we encountered more than 150,000 unique barcode index numbers (BINs) (i.e. species proxies). We assess between site differences in community diversity using beta-diversity and the partitioned components of species replacement and richness difference. Global total beta-diversity (dissimilarity) increases with decreasing latitude, greater spatial distance and greater temporal distance. Species replacement and richness difference patterns vary across biogeographic regions. Our findings support long-standing, general expectations of global biodiversity patterns. However, we also show that the underlying processes driving patterns may be regionally linked., (© 2024. The Author(s).)

Microbial communities can be structured by both deterministic and stochastic processes, but the relative importance of these processes remains unknown. The ambiguity partly arises from an inability to disentangle soil microbial processes from confounding factors, such as aboveground plant communities or anthropogenic disturbance. In this study, we characterized the relative contributions of determinism and stochasticity to assembly processes of soil bacterial communities across a large environmental gradient of undisturbed Antarctic soils. We hypothesized that harsh soils would impose a strong environmental selection on microbial communities, whereas communities in benign soils would be structured largely by dispersal. Contrary to our expectations, dispersal was the dominant assembly mechanism across the entire soil environmental gradient, including benign environments. The microbial community composition reflects slowly changing soil conditions and dispersal limitation of isolated sites. Thus, stochastic processes, as opposed to deterministic, are primary drivers of soil ecosystem assembly across space at our study site. This is especially surprising given the strong environmental constraints on soil microorganisms in one of the harshest environments on the planet, suggesting that dispersal could be a driving force in microbial community assembly in soils worldwide. IMPORTANCE Because of their diversity and ubiquity, microbes provide an excellent means to tease apart how natural communities are structured. In general, ecologists believe that stochastic assembly processes, like random drift and dispersal, should dominate in benign environments while deterministic processes, like environmental filtering, should be prevalent in harsh environments. To help resolve this debate, we analyzed microbial community composition in pristine Antarctic soils devoid of human influence or plant communities for eons. Our results demonstrate that dispersal limitation is a surprisingly potent force of community limitation throughout all soil conditions. Thus, dispersal appears to be a driving force of microbial community assembly, even in the harshest of conditions.

The relationship between species diversity and environmental parameters is poorly understood for the mobile macrofauna of deep-sea habitats due to under-sampling and subsequent lack of accurate taxonomic information. To redress this, cytochrome oxidase c subunit I (COI) DNA sequences were used to estimate species diversity and to compare phoxocephalid amphipod assemblages among 20 stations encompassing a range of environmental conditions. Two regions, east (Chatham Rise) and west (Challenger Plateau) of New Zealand were sampled to depths of 200-1200 m with an epibenthic sled. Using a comparison among identified morphospecies, we found a clear gap in sequence divergences between 6% and 13% and used a 6% threshold to designate molecular operational taxonomic units (MOTUs), as a surrogate to putative species. DNA sequences (n = 297) revealed high total diversity (n = 49 MOTUs), as well as high beta diversity (28 MOTUs found at single location only). Novel phoxocephalid MOTUs were found at most stations, especially on Challenger Plateau and the flanks of Chatham Rise. Analyses of interstation assemblages revealed a major split between regions, indicating minimal overlap in taxon distributions. A cluster of highly similar stations was identified, broadly distributed over the crest of Chatham Rise, in association with elevated food availability, probably resulting from higher surface productivity and relatively shallow depth. Accordingly, multivariate analysis revealed a strong correlation between phoxocephalid assemblages and food supply. This study highlights the value of molecular approaches, in particular COI sequences, for quantifying and comparing diversity in under-sampled and/or under-studied taxa., (© 2012 Blackwell Publishing Ltd.)

Extremophiles exist among all three domains of life; however, physiological mechanisms for surviving harsh environmental conditions differ among Bacteria, Archaea and Eukarya. Consequently, we expect that domain-specific variation of diversity and community assembly patterns exist along environmental gradients in extreme environments. We investigated inter-domain community compositional differences along a high-elevation salinity gradient in the McMurdo Dry Valleys, Antarctica. Conductivity for 24 soil samples collected along the gradient ranged widely from 50 to 8355 µS cm -1 . Taxonomic richness varied among domains, with a total of 359 bacterial, 2 archaeal, 56 fungal, and 69 non-fungal eukaryotic operational taxonomic units (OTUs). Richness for bacteria, archaea, fungi, and non-fungal eukaryotes declined with increasing conductivity (all P < 0.05). Principal coordinate ordination analysis (PCoA) revealed significant (ANOSIM R = 0.97) groupings of low/high salinity bacterial OTUs, while OTUs from other domains were not significantly clustered. Bacterial beta diversity was unimodally distributed along the gradient and had a nested structure driven by species losses, whereas in fungi and non-fungal eukaryotes beta diversity declined monotonically without strong evidence of nestedness. Thus, while increased salinity acts as a stressor in all domains, the mechanisms driving community assembly along the gradient differ substantially between the domains., (© 2022. The Author(s), under exclusive licence to Springer Japan KK, part of Springer Nature.)

Assessment of the diversity of algal assemblages in Antarctica has until now largely relied on traditional microbiological culture approaches. Here we used DNA metabarcoding through high-throughput sequencing (HTS) to assess the uncultured algal diversity at two sites on Deception Island, Antarctica. The first was a relatively undisturbed site within an Antarctic Specially Protected Area (ASPA 140), and the second was a site heavily impacted by human visitation, the Whalers Bay historic site. We detected 65 distinct algal taxa, 50 from within ASPA 140 and 61 from Whalers Bay. Of these taxa, 46 were common to both sites, and 19 only occurred at one site. Algal richness was about six times greater than reported in previous studies using culture methods. A high proportion of DNA reads obtained was assigned to the highly invasive species Caulerpa webbiana at Whalers Bay, and the potentially pathogenic genus Desmodesmus was found at both sites. Our data demonstrate that important differences exist between these two protected and human-impacted sites on Deception Island in terms of algal diversity, richness, and abundance. The South Shetland Islands have experienced considerable effects of climate change in recent decades, while warming through geothermal activity on Deception Island itself makes this island one of the most vulnerable to colonization by non-native species. The detection of DNA of non-native taxa highlights concerns about how human impacts, which take place primarily through tourism and national research operations, may influence future biological colonization processes in Antarctica.

Fungi comprise approximately 20% of all eukaryotic species and are connected to virtually all life forms on Earth. Yet, their diversity remains contentious, their distribution elusive, and their conservation neglected. We aim to flip this situation by synthesizing current knowledge. We present a revised estimate of 2–3 million fungal species with a "best estimate" at 2.5 million. To name the unknown >90% of these by the end of this century, we propose recognition of species known only from DNA data and call for large-scale sampling campaigns. We present an updated global map of fungal richness, highlighting tropical and temperate ecoregions of high diversity. We call for further Red List assessments and enhanced management guidelines to aid fungal conservation. Given that fungi play an inseparable role in our lives and in all ecosystems, and considering the fascinating questions remaining to be answered, we argue that fungi constitute the next frontier of biodiversity research. [ABSTRACT FROM AUTHOR]

With climate, biodiversity and inequity crises squarely upon us, never has there been a more pressing time to rethink how we conceptualize, understand and manage our relationship with Earth's biodiversity. Here, we describe governance principles of 17 Indigenous Nations from the Northwest Coast of North America used to understand and steward relationships among all components of nature, including humans. We then chart the colonial origins of biodiversity science and use the complex case of sea otter recovery to illuminate how ancestral governance principles can be mobilized to characterize, manage and restore biodiversity in more inclusive, integrative and equitable ways. To enhance environmental sustainability, resilience and social justice amid today's crises, we need to broaden who benefits from and participates in the sciences of biodiversity by expanding the values and methodologies that shape such initiatives. In practice, biodiversity conservation and natural resource management need to shift from centralized, siloed approaches to those that can accommodate plurality in values, objectives, governance systems, legal traditions and ways of knowing. In doing so, developing solutions to our planetary crises becomes a shared responsibility. This article is part of the theme issue 'Detecting and attributing the causes of biodiversity change: needs, gaps and solutions'. [ABSTRACT FROM AUTHOR]

Antarctic terrestrial biodiversity faces multiple threats, from invasive species to climate change. Yet no large-scale assessments of threat management strategies exist. Applying a structured participatory approach, we demonstrate that existing conservation efforts are insufficient in a changing world, estimating that 65% (at best 37%, at worst 97%) of native terrestrial taxa and land-associated seabirds are likely to decline by 2100 under current trajectories. Emperor penguins are identified as the most vulnerable taxon, followed by other seabirds and dry soil nematodes. We find that implementing 10 key threat management strategies in parallel, at an estimated present-day equivalent annual cost of US$23 million, could benefit up to 84% of Antarctic taxa. Climate change is identified as the most pervasive threat to Antarctic biodiversity and influencing global policy to effectively limit climate change is the most beneficial conservation strategy. However, minimising impacts of human activities and improved planning and management of new infrastructure projects are cost-effective and will help to minimise regional threats. Simultaneous global and regional efforts are critical to secure Antarctic biodiversity for future generations. Antarctic terrestrial biodiversity is at risk. This study demonstrates that existing conservation efforts will be insufficient in a changing world and that simultaneous global and regional efforts are urgently required to conserve Antarctic biodiversity for future generations. [ABSTRACT FROM AUTHOR]

Previous studies of the microarthropods of Marion Island, Southern Ocean, documented high mitochondrial COI (cytochrome c oxidase subunit I) haplotype diversity and significant genetic structure, which were ascribed to landscape subdivision. In this paper we revisit these ideas in light of new geomorphological evidence indicating a major lineament orientated along N26.5°E. Using the microarthropod Halozetes fulvus, we test the hypothesis that the eastern and western sides of the island show different population genetic patterns, corresponding to the previously unrecognized geological separation of these regions, and perhaps also with differences in climates across the island and further landscape complexity. Mitochondrial COI data were collected for 291 H. fulvus individuals from 30 localities across the island. Notwithstanding our sampling effort, haplotype diversity was under-sampled as indicated by rarefaction analyses. Overall, significant genetic structure was found across the island as indicated by ΦST analyses. Nested clade phylogeographical analyses suggested that restricted gene flow (with isolation-by-distance) played a role in shaping current genetic patterns, as confirmed by Mantel tests. At the local scale, coalescent modelling revealed two different genetic patterns. The first, characterizing populations on the south-western corner of the island, was that of low effective population size and high gene flow. The converse was found on the eastern side of Marion Island. Taken together, substantial differences in spatial genetic structure characterize H. fulvus populations across Marion Island, in keeping with the hypothesis that the complex history of the island, including the N26.5°E geological lineament, has influenced population genetic structure. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 105, 131-145. [ABSTRACT FROM AUTHOR]

Biological invasions are a major threat to the terrestrial ecosystems of the sub-Antarctic islands. While non-native plants generally have negative impacts on native arthropods, few studies have investigated how both native and non-native arthropods and plants interact in the sub-Antarctic islands. This was the aim of our study, which was conducted on three islands of the Kerguelen archipelago. The design was based on the spatial proximity of areas dominated by non-native or native plant species. Trait-based indices were calculated to characterize the functional structure of plant communities, considering plant stature and leaf traits. Native and non-native vegetation had contrasting functional composition but their functional diversity was similar. The effects of the type of vegetation, native or non-native, and plant functional diversity on arthropods were tested. Native macro-arthropod richness and abundance were similar or higher in non-native vegetation, and benefited from greater plant functional diversity. Abundances of macro-herbivores, macro-decomposers and macro-predators were also similar or higher in non-native vegetation. Conversely, the abundances of micro-arthropods, Symphypleona springtails and Oribatida mites, were higher in native vegetation but we also found that plant functional diversity had a negative effect on Symphypleona. Our results suggest that non-native plants can affect micro-arthropods directly or indirectly, likely through their effects on abiotic factors. By affecting macro-arthropod abundances across different trophic groups and by depleting micro-arthropods, non-native plants can alter trophic interactions, functional balances and the functioning of whole ecosystem. [ABSTRACT FROM AUTHOR]

Springs as ecotones represent a suitable environment for testing hypotheses regarding the principles of a benthic community assembly. In this study, we aimed to uncover the processes which form the oligochaete assemblages in the karst springs environment. To uncover the assembly mechanism of the oligochaete community, we applied a multidimensional approach which included taxonomic, trait, and phylogenetic data. In total, 37 aquatic/semiaquatic oligochaete taxa were found. Null model analyses did not uncover any clear evidence of a nonrandom functional/phylogenetic structure of spring oligochaete fauna. Although, for all of the springs, the observed functional/phylogenetic diversity did not differ from that of null models, the position of the majority of observed values under the mean value of null models suggests that environmental filtering may be a more important driver in the community assembly. The environmental parameters that significantly drive the three biodiversity facets of the oligochaetes were spring temperature (functional and phylogenetic diversity), trophic status (taxonomic a phylogenetic diversity), spring connection (taxonomic diversity), and substrate, as well as oxygen conditions (functional diversity). Our findings provide, therefore, robust evidence that the ecological drivers of biodiversity differ among different scales, and future research should apply the multifacet approach to determine biodiversity conservation management. [ABSTRACT FROM AUTHOR]

Background: DNA barcodes are a useful tool for discovering, understanding, and monitoring biodiversity which are critical tasks at a time of rapid biodiversity loss. However, widespread adoption of barcodes requires cost-effective and simple barcoding methods. We here present a workflow that satisfies these conditions. It was developed via "innovation through subtraction" and thus requires minimal lab equipment, can be learned within days, reduces the barcode sequencing cost to < 10 cents, and allows fast turnaround from specimen to sequence by using the portable MinION sequencer. Results: We describe how tagged amplicons can be obtained and sequenced with the real-time MinION sequencer in many settings (field stations, biodiversity labs, citizen science labs, schools). We also provide amplicon coverage recommendations that are based on several runs of the latest generation of MinION flow cells ("R10.3") which suggest that each run can generate barcodes for > 10,000 specimens. Next, we present a novel software, ONTbarcoder, which overcomes the bioinformatics challenges posed by MinION reads. The software is compatible with Windows 10, Macintosh, and Linux, has a graphical user interface (GUI), and can generate thousands of barcodes on a standard laptop within hours based on only two input files (FASTQ, demultiplexing file). We document that MinION barcodes are virtually identical to Sanger and Illumina barcodes for the same specimens (> 99.99%) and provide evidence that MinION flow cells and reads have improved rapidly since 2018. Conclusions: We propose that barcoding with MinION is the way forward for government agencies, universities, museums, and schools because it combines low consumable and capital cost with scalability. Small projects can use the flow cell dongle ("Flongle") while large projects can rely on MinION flow cells that can be stopped and re-used after collecting sufficient data for a given project. [ABSTRACT FROM AUTHOR]

Anthropogenic activities are changing the state of ecosystems worldwide, affecting community composition and often resulting in loss of biodiversity. Rivers are among the most impacted ecosystems. Recording their current state with regular biomonitoring is important to assess the future trajectory of biodiversity. Traditional monitoring methods for ecological assessments are costly and time-intensive. Here, we compared monitoring of macroinvertebrates based on environmental DNA (eDNA) sampling with monitoring based on traditional kick-net sampling to assess biodiversity patterns at 92 river sites covering all major Swiss river catchments. From the kick-net community data, a biotic index (IBCH) based on 145 indicator taxa had been established. The index was matched by the taxonomically annotated eDNA data by using a machine learning approach. Our comparison of diversity patterns only uses the zero-radius Operational Taxonomic Units assigned to the indicator taxa. Overall, we found a strong congruence between both methods for the assessment of the total indicator community composition (gamma diversity). However, when assessing biodiversity at the site level (alpha diversity), the methods were less consistent and gave complementary data on composition. Specifically, environmental DNA retrieved significantly fewer indicator taxa per site than the kick-net approach. Importantly, however, the subsequent ecological classification of rivers based on the detected indicators resulted in similar biotic index scores for the kick-net and the eDNA data that was classified using a random forest approach. The majority of the predictions (72%) from the random forest classification resulted in the same river status categories as the kick-net approach. Thus, environmental DNA validly detected indicator communities and, combined with machine learning, provided reliable classifications of the ecological state of rivers. Overall, while environmental DNA gives complementary data on the macroinvertebrate community composition compared to the kick-net approach, the subsequently calculated indices for the ecological classification of river sites are nevertheless directly comparable and consistent. [ABSTRACT FROM AUTHOR]

Antarctica is home to numerous species that are vulnerable to environmental change, and assessing species responses requires long-term monitoring. However, Antarctica's extreme nature presents limitations to conducting the type of long-term or broad-scale studies necessary for understanding changes in community composition. In this paper, we evaluate the potential for the use of environmental DNA (eDNA) methods in expanding scientific research efforts for biodiversity monitoring and conservation genetics in Antarctica. Through a systematic literature review, we identify that most Antarctic eDNA studies have focused on microbial metabarcoding using samples from soil, sediment, snow, and water. Few eDNA studies in Antarctica have focused on vertebrate biodiversity or population genetics, but we highlight several examples that have effectively and creatively used eDNA to study vertebrates. We highlight the potential for the use of portable sequencing technologies in the future of Antarctic eDNA research. We conclude that eDNA could be a valuable tool for researchers in their efforts to assess, monitor, and conserve biodiversity in the Antarctic. [ABSTRACT FROM AUTHOR]

Phagotrophic protists (formerly protozoa) are a highly diverse, polyphyletic grouping of generally unicellular, heterotrophic eukaryotes that are key regulators of the soil microbiome. The biodiversity and ecology of soil phagotrophic protists are still largely uncharacterized, especially in the Antarctic, which possesses some of the harshest terrestrial environments known and potentially many physiologically unique and scientifically interesting species. Antarctic soil systems are also highly limited in terms of moisture, temperature, and carbon, and the resulting reduced biological complexity can facilitate fine-tuned investigation of the drivers and functioning of microbial communities. To facilitate and encourage future research into protist biodiversity and ecology, especially in context of the broader functioning of Antarctic terrestrial communities, I review the biodiversity, distribution, and ecology of Antarctic soil phagotrophic protists. Biodiversity appears to be highly structured by region and taxonomic group, with the Antarctic Peninsula having the highest taxonomic diversity and ciliates (Ciliophora) being the most diverse taxonomic group. However, richness estimates are likely skewed by disproportionate sampling (over half of the studies are from the peninsula), habitat type bias (predominately moss-associated soils), investigator bias (toward ciliates and the testate amoeba morphogroup), and methodological approach (toward cultivation and morphological identification). To remedy these biases, a standardized methodology using both morphological and molecular identification and increased emphasis on microflagellate and naked amoeba morphogroups is needed. Additionally, future research should transition away from biodiversity survey studies to dedicated ecological studies that emphasize the function, ecophysiology, endemicity, dispersal, and impact of abiotic drivers beyond moisture and temperature. [ABSTRACT FROM AUTHOR]

As part of the reconstruction of the Brazilian Antarctic Station on King George Island, three areas of moss carpet were transplanted to minimize the impact of the new facilities on the local biodiversity. A total of 650 m2 of moss carpet was transplanted to neighboring but previously uncolonized locations and has subsequently survived for the last 3 years. Antarctic moss carpets typically comprise low moss species diversity and are often monospecific. We investigated the cryptic biodiversity that was transplanted along with the carpets using a metabarcoding approach through high throughput sequencing. We targeted 16S rRNA for Bacteria and Archaea, ITS for Fungi and Viridiplantae and Cox1 for Metazoa. We detected DNA representing 263 taxa from five Kingdoms (Chromista, Fungi, Metazoa, Protista and Viridiplantae), two Domains (Archaea and Bacteria) and 33 Phyla associated with the carpet. This diversity included one Archaea, 189 Bacteria, 24 Chromista, 19 Fungi, eight Metazoa, seven Protista and 16 Viridiplantae. Bacteria was the most abundant, rich and diverse group, with Chromista second in diversity and richness. Metazoa was less diverse but second highest in dominance. This is the first study to attempt transplanting a significant area of moss carpet to minimize anthropogenic environmental damage in Antarctica and to use metabarcoding as a proxy to assess diversity associated with Antarctic moss carpets, further highlighting the importance of such habitats for other organisms and their importance for conservation. [ABSTRACT FROM AUTHOR]

It is well established that Antarctic biodiversity has been strongly influenced by rapid climatic fluctuations during the Quaternary. Marine invertebrates from Antarctica constitute an interesting lens through which to study the impacts of the last glacial periods as glaciation impacted the distribution and intraspecific genetic variation of these animals. However, the impact on the spatial genetic distribution and historical demography of local processes in areas adjacent to the West Antarctic Peninsula (WAP) is less clear. Here we present new genetic information on the bivalve Kidderia subquadrata, a small mollusk that inhabits intertidal rocky island ecosystems throughout the WAP. Using a phylogeographical approach, we examined the spatial patterns of genetic diversity in this brooder species to test the hypothesis of strong genetic structure in incubating organisms and the hypothesis of glacial refugia in organisms with limited dispersion. We found evidence of strong genetic structure among populations of the WAP and a recent expansion in the South Shetland Islands. Our findings are concordant with the predictions that incubating organisms, abundant in Antarctica, present a strong genetic structure among their populations and also support the hypothesis of glacial refugia in organisms with limited dispersion. The effect of the coastal current pattern in the WAP is suggested as a driver to the local spatial dynamics of the genetic diversity distribution. Although genetic information about this microbivalve is still scarce, the knowledge reported here has increased our understanding of the evolutionary patterns of this organism that is endemic to the Southern Ocean. [ABSTRACT FROM AUTHOR]

Biomonitoring programs have evolved beyond the sole use of morphological identification to determine the composition of invertebrate species assemblages in an array of ecosystems. The application of DNA metabarcoding in freshwater systems for assessing benthic invertebrate communities is now being employed to generate biological information for environmental monitoring and assessment. A possible shift from the extraction of DNA from net-collected bulk benthic samples to its extraction directly from water samples for metabarcoding has generated considerable interest based on the assumption that taxon detectability is comparable when using either method. To test this, we studied paired water and benthos samples from a taxon-rich wetland complex, to investigate differences in the detection of arthropod taxa from each sample type. We demonstrate that metabarcoding of DNA extracted directly from water samples is a poor surrogate for DNA extracted from bulk benthic samples, focusing on key bioindicator groups. Our results continue to support the use of bulk benthic samples as a basis for metabarcoding-based biomonitoring, with nearly three times greater total richness in benthic samples compared to water samples. We also demonstrated that few arthropod taxa are shared between collection methods, with a notable lack of key bioindicator EPTO taxa in the water samples. Although species coverage in water could likely be improved through increased sample replication and/or increased sequencing depth, benthic samples remain the most representative, cost-effective method of generating aquatic compositional information via metabarcoding. [ABSTRACT FROM AUTHOR]

In 2010, the Conference of the Parties of the Convention on Biological Diversity agreed on the Strategic Plan for Biodiversity 2011–2020 in Aichi Prefecture, Japan. As this plan approaches its end, we discussed whether marine biodiversity and prediction studies were nearing the Aichi Targets during the 4th World Conference on Marine Biodiversity held in Montreal, Canada in June 2018. This article summarises the outcome of a five-day group discussion on how global marine biodiversity studies should be focused further to better understand the patterns of biodiversity. We discussed and reviewed seven fundamental biodiversity priorities related to nine Aichi Targets focusing on global biodiversity discovery and predictions to improve and enhance biodiversity data standards (quantity and quality), tools and techniques, spatial and temporal scale framing, and stewardship and dissemination. We discuss how identifying biodiversity knowledge gaps and promoting efforts have and will reduce such gaps, including via the use of new databases, tools and technology, and how these resources could be improved in the future. The group recognised significant progress toward Target 19 in relation to scientific knowledge, but negligible progress with regard to Targets 6 to 13 which aimed to safeguard and reduce human impacts on biodiversity. [ABSTRACT FROM AUTHOR]

Few areas of conservation biology have grown at quite the same pace as conservation genetics. New Zealand exemplifies this growth with a 50–100-fold increase in publications since a review in 1994. A wide array of techniques in the fields of population genetics, molecular systematics and molecular biology has now become available to conservation biologists to apply to management. Here I review developments categorised broadly into six headings: measuring diversity among individuals; inbreeding; selection and drift; identification of individuals; measuring differentiation (demes, populations, MUs, ESUs, species, hybrids); and other molecular biological approaches. The vast range of available techniques and analyses makes it more important than ever that appropriate tools are chosen for the questions posed, and applied to where need is greatest, if we are to manage our biological diversity successfully in the twenty-first century. [ABSTRACT FROM AUTHOR]

Nearly 20,000 adult caddisfly specimens were collected during May through September 2010-2014 from approximately weekly ultraviolet light samples of Fairbanks Creek in northern Lower Michigan. Detrended correspondence analysis determined four distinct seasonal assemblages corresponding to spring (May to late June), summer (late June to late July), late summer (late July to early September), and autumn (early to late September). Of the 109 total species caught, 5 indicated the spring assemblage, 13 the summer assemblage, 1 the late summer assemblage, and 4 the autumn assemblage. Species richness, specimen abundance, and number of unique species were highest during the summer. Most summer samples contained ∼50% of all species caught during the year; whereas the spring and autumn assemblage contained a smaller but unique fauna, and the late summer assemblage was characterized by a decreasing richness of summer species. Pollution tolerance and shredder to filtering collector ratio metrics varied by factors of 5-30x; both were highly dependent on the abundance of particular species. Overall mean values of all metrics varied seasonally but not annually. The specific date of peak species richness varied based on annual weather, but occurred at a similar degree-day value for all 5 years. These results suggest the importance of sampling within a season when comparing streams for biological monitoring purposes. Moreover, they confirm the comparability of samples taken from different years, provided such samples are collected during the same season. [ABSTRACT FROM AUTHOR]

Antarctica is enormous, cold, remote, and particularly sensitive to climate change. Most biological research below 60°S has focused on the isolated nature of the biota and how organisms have adapted to the cold and ice. However, biogeographic patterns in Antarctica and the Southern Ocean, and the processes explaining how those patterns came about, still await adequate explanation. Both terrestrial and marine organisms have been influenced by climatic change (e.g., glaciation), physical phenomena (e.g., oceanic currents), and/or potential barriers to gene flow (e.g., steep thermal gradients). Whereas the Antarctic region contains diverse and complex marine communities, terrestrial systems tend to be comparatively simple with limited diversity. Here, we challenge the current dogma used to explain the diversity and biogeographic patterns present in the Antarctic. We assert that relatively modern processes within the last few million years, rather than geo-logical events that occurred in the Eocene and Miocene, account for present patterns of biodiversity in the region. Additionally, reproductive life history stages appear to have little influence in structuring genetic patterns in the Antarctic, as currents and glacial patterns are noted to be more important drivers of organismal patterns of distribution. Finally, we highlight the need for additional sampling, high-throughput genomic approaches, and broad, multinational cooperation for addressing outstanding questions of Antarctic biogeography and biodiversity. [ABSTRACT FROM AUTHOR]

Ecological restoration of landscapes is an integral part of the mining process. However, restoration is often constrained by a lack of consistent monitoring approaches. For example, the need for specialist techniques and trapping approaches often limits monitoring of fauna recovery. Application of molecular tools has made important contributions to understanding factors influencing restoration success. Here, we outline advances in next‐generation sequencing methods, especially metabarcoding of environmental DNA. These have potential to revolutionize the practical contribution of genetics to the monitoring of fauna in a restoration context. DNA metabarcoding involves the simultaneous characterization of biota using DNA barcodes. It is a powerful method to assess the biodiversity contained within environmental samples (e.g. scats, bulk arthropods, soil, water, and sediment). This review outlines the challenges associated with current approaches to monitoring faunal biodiversity throughout ecological restoration. We also demonstrate how the emergence of DNA metabarcoding could recast monitoring capacity for improved ecological restoration outcomes, while discussing current limitations of a DNA‐based approach to biodiversity assessment. [ABSTRACT FROM AUTHOR]

Springtails and mites are the most abundant and species rich micro arthropods in the Antarctic and species tend to be short-range endemics. It was thought that the Springtail (Collembola), Friesea grisea (Schäffer) was an exception. It was described briefly nearly 150 years ago from South Georgia and has not been redescribed from the type locality since. However, published localities include the South Shetland Islands, the Antarctic Peninsula, Enderby Land, Marguerite Bay and South and North Victoria Land suggesting that it is unusually widespread. Recent sequence data have indicated that some Antarctic populations could be putative species but individuals were allegedly morphologically identical. No sequence data were available for South Georgian specimens. These results suggested that a new examination of the South Georgian species’ morphology was needed in order to resolve the anomalous biogeographic patterns. I here redescribe F. grisea from South Georgia and show that it has subtle morphological characters that distinguish it from Antarctic individuals allowing it to be unambiguously distinguished from all known Antarctic populations. Consequently, Friesea antarctica is taken out of synonymy with F. grisea. These results emphasise the endemism of Antarctic faunas and allows more targeted conservation planning, especially for short-range endemic species located in likely refugia during glacial periods. Descriptions of putative species from the Continental populations are currently in progress. A new Friesea species from South Georgia, F. fantaba, is also described here. The genus Friesea is now the most species-rich genus of terrestrial arthropods in both the Antarctic and subantarctic and includes twelve species. [ABSTRACT FROM AUTHOR]

Barrientos Island is a small islet in the South Shetland archipelago frequently visited by Antarctic tourists. Collembola were recently used in another study developed in this site to assess the environmental conditions of two paths used by visitors, showing the importance of this soil faunal community. This motivated the realization of the first comprehensive census of Collembola from Barrientos Island. Fifty-six samples were recorded over three seasons, 2011-2013, from eight different substrate types. During the last campaign, 39 soil samples were also taken to analyze different physical, chemical, biological, microbiological, and biochemical variables in order to put into relation all these environmental conditions with abundance and richness of Collembola species. A total of ten species were recorded, all of them previously cited from Antarctica. The native species Cryptopygus antarcticus antarcticus Willem (Collembola: Isotomidae) is the most abundant in the island. Two cosmopolitan species—Hypogastrura viatica (Tullberg) (Hypogastruridae) and Mesaphorura macrochaeta Rusek (Tullbergiidae)—were also identified. Many of the species on this island can be considered as eurytopic, appearing in most of the analyzed substrate types. Collembola distribution was found to be influenced by elevation and, to a lesser extent, by phosphorous content and slope. Other variables that are usually cited in the specialized literature did not significantly influence the Collembola distribution in this island. Our results show that the distribution and abundance of Collembola in Antarctic locations is not directly dependent on a single factor. The environmental characteristics of each studied site will determine what factors are driving the composition and structure of this soil community. [ABSTRACT FROM AUTHOR]

The Antarctic-South American bank-forming moss Chorisodontium aciphyllum is known for having the oldest sub-fossils of any extant plant in Antarctica as well as extreme survival abilities, making it a candidate species for possible long-term survival in Antarctica. Applying phylogeographic and population genetic methods using the plastid markers trnL-F and rps4 and the nuclear internal transcribed spacer, we investigated the genetic diversity within C. aciphyllum throughout its range. Low genetic variation was found in all loci, both between and within Antarctic and southern South American populations, suggesting a relatively recent (likely within the last million years) colonization of this moss to the Antarctic, as well as a likely severe bottleneck during Pleistocene glaciations in southern South America. We also performed a simple atmospheric transfer modeling approach to study potential colonization rates of small (microscopic/microbial) or spore-dispersed organisms (such as many mosses and lichens). These suggested that the northern Antarctic Peninsula shows potentially regular connectivity from southern South America, with air masses transferring, particularly southbound, between the two regions. We found elevated genetic variation of C. aciphyllum in Elephant Island, also the location of the oldest known moss banks (> 5500 years), suggesting this location to be a genetic hotspot for this species in the Antarctic. [ABSTRACT FROM AUTHOR]

Zooplankton are an essential component of healthy functioning lake and wetland ecosystems. Despite this, zooplankton communities within constructed treatment wetlands (CTWs) in agricultural landscapes remain unstudied. Taxa richness, total abundances and community composition were evaluated for zooplankton assemblages from three habitat types (lakes, CTWs and drainage ditches) within five intensive agricultural peat lake catchments in New Zealand. Relationships to water quality, physicochemical and biotic habitat variables were examined. Zooplankton were dominated by cladocerans, copepods, ostracods and rotifer taxa, representing a range of communities typical of lake and pond habitats. CTWs supported species otherwise absent from lake and drain habitats, increasing the overall biodiversity of the highly-modified peat lake catchments. Taxa richness of CTWs was higher than that of drains, and a few CTWs had greater diversity than several lakes. The morphological variables area and depth contributed to the greatest differences between habitats, followed by pH, inorganic nitrogen, conductivity and temperature. Correspondingly, zooplankton communities were significantly influenced by habitat area, depth and pH, as well as ammonium, phosphate, water temperature, dissolved oxygen, and macrophyte cover. Opportunities were explored for refining CTW designs to enhance zooplankton biodiversity and potentially improve treatment efficiency through increasing the complexity and diversity of CTW habitat niches. [ABSTRACT FROM AUTHOR]

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Cape Hallett (72°19′S; 170°13′E) lies at the northern end of the western coastline of the Ross Sea region, and, to date, there appears to be no full description of its terrestrial flora despite its probable importance in understanding links between biodiversity and latitude. Here we present information about lichens and mosses from published papers, herbarium collections and personal surveys for Cape Hallett and seven nearby sites. A total of 59 lichen and 11 moss species are reported for these eight sites. Cape Hallett is one of the richest sites for terrestrial biodiversity in the Ross Sea region with about 46 lichen species and nine species of bryophytes. Lichens have their greatest diversity on the upper scree and summit area (30 species, 330 m), the least within the large penguin colony at sea level (one species). The station at Cape Hallett was established in 1957, and some of the earliest ecological and ecophysiological studies in Antarctica were carried out there. Historical comparisons are possible and have revealed considerable changes in vegetation in the lower flush area, a high level of frost heave disturbance, new lichen growth rate estimates for northern Victoria Land and extreme stability of the snow banks on the scree slopes. Cape Hallett represents a very important site for studies on links between terrestrial flora and the environment as well as on possible effects of climate change. [ABSTRACT FROM AUTHOR]

There are approximately 55,000 described Acari species, accounting for almost half of all known Arachnida species, but total estimated Acari diversity is reckoned to be far greater. One important source of currently hidden Acari diversity is cryptic speciation, which poses challenges to taxonomists documenting biodiversity assessment as well as to researchers in medicine and agriculture. In this review, we revisit the subject of biodiversity in the Acari and investigate what is currently known about cryptic species within this group. Based on a thorough literature search, we show that the probability of occurrence of cryptic species is mainly related to the number of attempts made to detect them. The use of, both, DNA tools and bioassays significantly increased the probability of cryptic species detection. We did not confirm the generally-accepted idea that species lifestyle (i.e. free-living vs. symbiotic) affects the number of cryptic species. To increase detection of cryptic lineages and to understand the processes leading to cryptic speciation in Acari, integrative approaches including multivariate morphometrics, molecular tools, crossing, ecological assays, intensive sampling, and experimental evolution are recommended. We conclude that there is a demonstrable need for future investigations focusing on potentially hidden mite and tick species and addressing evolutionary mechanisms behind cryptic speciation within Acari. [ABSTRACT FROM AUTHOR]

The harsh climate and patchy distribution of habitable terrestrial ecosystems constrain soil invertebrate communities in continental Antarctica. The Windmill Islands in East Antarctica have a relatively gentle climate by Antarctic standards, and the region supports some of the most well-developed moss beds on the continent. These moss beds and soils are known to sustain invertebrate communities dominated by nematodes, rotifers and tardigrades, but our knowledge of the diversity and composition of these communities remains limited. We extracted soil fauna from 74 soil samples representing a wide range of microhabitats, and 24 moss samples, collected at Clark Peninsula, Bailey Peninsula and Robinson Ridge in the Windmill Islands during the 2012-2013 austral summer. Invertebrates were present in all samples, but densities varied considerably both within and between sites with limited correlation with edaphic variables or cover type. Taxa found included two species of nematodes ( Plectus murrayi; Plectus frigophilus), one mite ( Nanorchestes antarcticus) as well as tardigrades and rotifers (enumerated only). No springtails were found in this study, but individuals of the genus Cryptopygus were later recovered from moss collected near Casey Station. The Windmill Islands soils and moss beds support dense populations of soil fauna. However, despite the relatively mild climate conditions and favorable soil properties, species diversity is low. The diversity is possibly limited by recent deglaciation and limited dispersal opportunities to the region. Given favorable local conditions, it is likely that colonizing species will perform well, whether these arrive by natural means or are accidentally introduced by humans. [ABSTRACT FROM AUTHOR]

Gammarus fossarum is a diverse species complex of epigean freshwater amphipods throughout Europe. Due to their poor dispersal capabilities and ubiquity, these crustaceans may serve as a model for investigating the influence of historical factors on the contemporary distribution and diversity patterns of freshwater macrozoobenthos. Here, we investigate the fine-scale phylogeographic structure of this complex across its range in the southwestern Carpathian Mountains, which comprises two areas that are geographically isolated from its main European distribution area as well as from each other. Given the Tertiary age of many freshwater Gammarus species, we hypothesize that the southwestern Carpathian populations reflect a relict distribution pattern. We used two mitochondrial and three nuclear markers from 32 localities to reconstruct phylogenetic relationships and estimate the timings of divergence among southwestern Carpathian and non-Carpathian lineages. Cryptic diversity was evaluated from mitochondrial markers by employing phylogenetic and distance-based methods. We distinguished at least 16 cryptic microendemic taxa, some of them coexisting, distributed in the southwestern Carpathians in a mosaic-like pattern. These lineages form a monophyletic group together with several lineages from southeastern Europe. Estimated divergence times indicate a Middle Miocene origin of this clade, with many deep splits dating back to more than 10 Ma. This time frame corresponds with a period of intense geological subsidence in the region that gave birth to the Pannonian Basin. We conclude that subsidence could have been an important driver of diversification in freshwater Gammarus and that the southwestern Carpathians represent an ancient centre of diversity for these crustaceans. [ABSTRACT FROM AUTHOR]

Understanding the abundance and richness of species is one of the most fundamental steps in effecting their conservation. Despite global recognition of the significance of the below-ground component of diversity for ecosystem functioning, the soil remains a poorly studied terrestrial ecosystem. In South Africa, knowledge is increasing for a variety of soil faunal groups, but many still remain poorly understood. We have started to address this gap in the knowledge of South African soil biodiversity by focusing on the Collembola in an integrated project that encompasses systematics, barcoding and ecological assessments. Here we provide an updated list of the Collembola species from South Africa. A total of 124 species from 61 genera and 17 families has been recorded, of which 75 are considered endemic, 24 widespread, and 25 introduced. This total number of species excludes the 36 species we consider to be dubious. From the published data, Collembola species richness is high compared to other African countries, but low compared to European countries. This is largely a consequence of poor sampling in the African region, as our discovery of many new species in South Africa demonstrates. Our analyses also show that much ongoing work will be required before a reasonably comprehensive and spatially explicit picture of South Africa's springtail fauna can be provided, which may well exceed 1000 species. Such work will be necessary to help South Africa meet its commitments to biodiversity conservation, especially in the context of the 2020 Aichi targets of the Convention on Biological Diversity. [ABSTRACT FROM AUTHOR]

Until recently the Antarctic continent and Peninsula have been little impacted by non-native species, compared to other regions of the Earth. However, reports of species introductions are increasing as awareness of biological invasions as a major conservation threat, within the context of increased human activities and climate change scenarios, has grown within the Antarctic community. Given the recent increase in documented reports, here we provide an up-to-date inventory of known terrestrial non-native species introductions, including those subsequently removed since the 1990s, within the Antarctic Treaty area. This builds on earlier syntheses of records published in the mid-2000s, which focused largely on the sub-Antarctic islands, given the dearth of literature available at that time from the continental and maritime Antarctic regions. Reports of non-native species established in the natural environment (i.e. non-synanthropic) are mainly located within the Antarctic Peninsula region and Scotia Arc, with Deception Island, South Shetland Islands, the most impacted area. Non-native plants have generally been removed from sites of introduction, but no established invertebrates have yet been subject to any eradication attempt, despite a recent increase in reports. Legislation within the Protocol on Environmental Protection to the Antarctic Treaty has not kept pace with environmental best practice, potentially presenting difficulties for the practical aspects of non-native species control and eradication. The success of any eradication attempt may be affected by management practices and the biology of the target species under polar conditions. Practical management action is only likely to succeed with greater co-operation and improved communication and engagement by nations and industries operating in the region. [ABSTRACT FROM AUTHOR]

Antarctica has several apparent advantages for the study of biodiversity change along latitudinal gradients including a relatively pristine environment and simple community structures. Published analyses for lichens and mosses show no apparent gradient in biodiversity along the western Ross Sea coast line, the longest ice-free area in Antarctica spanning 14° latitude. One suggestion is that the area remains poorly surveyed. Here, we combine available species lists from four sites along the coast with new own data from two additional sites [Taylor Valley (77°30′S) and Diamond Hill (79°S)]. We show a decline in total terrestrial biodiversity with latitude from Cape Hallett (72°S) to Diamond Hill. However, the southernmost site, the Queen Maud Mountains (84°S), is exceptional with almost the same diversity as Cape Hallett. A categorization of lichens according to their proposed ecology shows the proportion of tolerant species remains relatively constant. However, the absolute number of conformant species declines with latitude, again with a minimum at Diamond Hill. Similarity indices are low and not very different between sites with Diamond Hill being the exception with very few species. We suggest that terrestrial biodiversity best reflects microhabitat water availability rather than macroclimatic temperature changes and use climate data from Taylor Valley and Diamond Hill to support this suggestion. We propose that the importance of microhabitats and landscape location is one of several possible limitations to the application of bioclimatic modeling along the Ross sea coastline. In the absence of a definitive link between macroclimate and the biota, predicting the effects of climate changes will be more challenging. [ABSTRACT FROM AUTHOR]

The terrestrial ecosystems of Victoria Land, Antarctica are characteristically simple in terms of biological diversity and ecological functioning. Nematodes are the most commonly encountered and abundant metazoans of Victoria Land soils, yet little is known of their diversity and distribution. Herein we present a summary of the geographic distribution, habitats and ecology of the terrestrial nematodes of Victoria Land from published and unpublished sources. All Victoria Land nematodes are endemic to Antarctica, and many are common and widely distributed at landscape scales. However, at smaller spatial scales, populations can have patchy distributions, with the presence or absence of each species strongly influenced by specific habitat requirements. As the frequency of nematode introductions to Antarctica increases, and soil habitats are altered in response to climate change, our current understanding of the environmental parameters associated with the biogeography of Antarctic nematofauna will be crucial to monitoring and possibly mitigating changes to these unique soil ecosystems. [ABSTRACT FROM AUTHOR]

Model systems have had a profound influence on the development of ecological theory and general principles. Compared to alternatives, the most effective models share some combination of the following characteristics: simpler, smaller, faster, general, idiosyncratic or manipulable. We argue that biological soil crusts (biocrusts) have unique combinations of these features that should be more widely exploited in community, landscape and ecosystem ecology. In community ecology, biocrusts are elucidating the importance of biodiversity and spatial pattern for maintaining ecosystem multifunctionality due to their manipulability in experiments. Due to idiosyncrasies in their modes of facilitation and competition, biocrusts have led to new models on the interplay between environmental stress and biotic interactions and on the maintenance of biodiversity by competitive processes. Biocrusts are perhaps one of the best examples of micro-landscapes-real landscapes that are small in size. Although they exhibit varying patch heterogeneity, aggregation, connectivity and fragmentation, like macro-landscapes, they are also compatible with well-replicated experiments (unlike macro-landscapes). In ecosystem ecology, a number of studies are imposing small-scale, low cost manipulations of global change or state factors in biocrust micro-landscapes. The versatility of biocrusts to inform such disparate lines of inquiry suggests that they are an especially useful model system that can enable researchers to see ecological principles more clearly and quickly. [ABSTRACT FROM AUTHOR]

Despite its ancient origin, global distribution and abundance in nearly all habitats, the class Collembola is comprised of only 8000 described species and is estimated to number no more than 50 000. Many morphologically defined species have broad geographical ranges that span continents, and recent molecular work has revealed high genetic diversity within species. However, the evolutionary significance of this genetic diversity is unknown. In this study, we sample five morphological species of the globally distributed genus Lepidocyrtus from 14 Panamanian sampling sites to characterize genetic diversity and test morphospecies against the biological species concept. Mitochondrial and nuclear DNA sequence data were analysed and a total of 58 molecular lineages revealed. Deep lineage diversification was recovered, with 30 molecular lineages estimated to have established more than 10 million years ago, and the origin almost all contemporary lineages preceding the onset of the Pleistocene (~2 Mya). Thirty-four lineages were sampled in sympatry revealing unambiguous cosegregation of mitochondrial and nuclear DNA sequence variation, consistent with biological species. Species richness within the class Collembola and the geographical structure of this diversity are substantially misrepresented components of terrestrial animal biodiversity. We speculate that global species richness of Collembola could be at least an order of magnitude greater than a previous estimate of 50 000 species. [ABSTRACT FROM AUTHOR]

Bioindicators, as taxa or functional groups, are widely used as indicators of environmental change, specific ecological factors or taxonomic diversity. The use of ecological, environmental and biodiversity indicators, is reviewed here. Although indicator taxa are considered to be generally unreliable as broad indicators of biodiversity, they may serve a useful function in identifying ecological characteristics or monitoring the effects of habitat management. Use of only a narrow range of taxa may be unreliable, and is particularly vulnerable to distortion by a small number of invasive species. Taxa also need to be selected to reflect the specific ecosystem being studied. It is recommended that isopods be used for soil systems (if there is sufficient local diversity), in some areas earthworms or mites may be useable but are generally too difficult to identify to be practically useful. In the ground layer indicator sets could include ants, millipedes, molluscs (snails in particular), ground beetles, harvestmen and gnaphosid spiders. Foliage-inhabiting indicators could comprise ants, chrysomelid leaf beetles, theridiid spiders and arctiid moths. Ants, orthopterans and butterflies may be appropriate for use in open habitats. These basic sets should be supplemented by other taxa where appropriate resources and taxonomic expertise are available. [ABSTRACT FROM AUTHOR]

ABSTRACT Responses of macroinvertebrate communities to human pressure are poorly known in large rivers compared with wadeable streams, in part because of variable substrate composition and the need to disentangle pressure responses from underlying natural environmental variation. To investigate the interaction between these factors, we sampled macroinvertebrates from the following: (i) submerged wood; (ii) littoral substrates < 0.8 m deep; and (iii) inorganic substrates in deep water (> 1.5 m) benthic habitats in eleven 6th- or 7th-order New Zealand rivers spanning a catchment vegetation land cover gradient. Cluster analysis identified primary site groupings reflecting regional environmental characteristics and secondary groupings for moderate gradient rivers reflecting the extent of catchment native vegetation cover. Low pressure sites with high levels of native vegetation had higher habitat quality and higher percentages of several Ephemeroptera and Trichoptera taxa than sites in developed catchments, whereas developed sites were more typically dominated by Diptera, Mollusca and other Trichoptera. Partial regression analysis indicated that the combination of underlying environment and human pressure accounted for 77-89% of the variation in Ephemeroptera, Trichoptera and Plecoptera taxa richness, %Diptera and %Mollusca, with human pressure explaining more variance than underlying environment for %Mollusca. Analysis of replicate deepwater and littoral samples from moderate gradient sites at the upper and lower ends of the pressure gradient indicated that total Trichoptera and Diptera richness and %Diptera responded to land use differences in these boatable river catchments. Responses to human pressure were substrate specific with the combination of littoral and deepwater substrates providing the most consistent response and yielding the highest number of taxa. These results indicate that multiple substrate sampling is required to document the biodiversity and condition of boatable river macroinvertebrate communities and that spatial variation in the underlying natural environment needs to be accounted for when interpreting pressure-response relationships. Copyright © 2012 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]

The rapidly changing climate in Antarctica is impacting the ecosystems. Since records began, climate changes have varied considerably throughout Antarctica with both positive and negative trends in temperatures and precipitation observed locally. However, over the course of this century a more directional increase in both temperature and precipitation is expected to occur throughout Antarctica. The soil communities of Antarctica are considered simple with most organisms existing at the edge of their physiological capabilities. Therefore, Antarctic soil communities are expected to be particularly sensitive to climate changes. However, a review of the current literature reveals that studies investigating the impact of climate change on soil communities, and in particular nematode communities, in Antarctica are very limited. Of the few studies focusing on Antarctic nematode communities, long-term monitoring has shown that nematode communities respond to changes in local climate trends as well as extreme (or pulse) events. These results are supported by in situ experiments, which show that nematode communities respond to both temperature and soil moisture manipulations. We conclude that the predicted climate changes are likely to exert a strong influence on nematode communities throughout Antarctica and will generally lead to increasing abundance, species richness, and food web complexity, although the opposite may occur locally. The degree to which local communities respond will depend on current conditions, i.e., average temperatures, soil moisture availability, vegetation or more importantly the lack thereof, and the local species pool in combination with the potential for new species to colonize. [ABSTRACT FROM AUTHOR]

Investigations of lichens collected in 1959/1960, 1963/1964 and 2003 from near the Beardmore Glacier in the southern Ross Sea region (84°S) have more than doubled the number of known lichen species in the area to around 30. The ranges of 15 species have been extended to 84°S. A lichen diversity hotspot has also been found along Ebony Ridge and its associated peaks where 28 of the species occur, a number equivalent to more northerly sites in the Ross Sea (e.g. Botany Bay 77°S). Furthermore, 6 species had been previously recorded only from the Antarctic Peninsula region. In agreement with previous studies on mites and springtails from the same area, we suggest that these populations represent relicts that predate the present Ross Ice Shelf extension, with a possible age of 2,000,000 years or older. [ABSTRACT FROM AUTHOR]

Background: The use of DNA based methods for assessing biodiversity has become increasingly common during the last years. Especially in speciose biomes as tropical rain forests and/or in hyperdiverse or understudied taxa they may efficiently complement morphological approaches. The most successful molecular approach in this field is DNA barcoding based on cytochrome c oxidase I (COI) marker, but other markers are used as well. Whereas most studies aim at identifying or describing species, there are only few attempts to use DNA markers for inventorying all animal species found in environmental samples to describe variations of biodiversity patterns. Methodology/Principal Findings: In this study, an analysis of the nuclear D3 region of the 28S rRNA gene to delimit species-like units is compared to results based on distinction of morphospecies. Data derived from both approaches are used to assess diversity and composition of staphylinid beetle communities of a Guineo-Congolian rain forest in Kenya. Beetles were collected with a standardized sampling design across six transects in primary and secondary forests using pitfall traps. Sequences could be obtained of 99% of all individuals. In total, 76 molecular operational taxonomic units (MOTUs) were found in contrast to 70 discernible morphospecies. Despite this difference both approaches revealed highly similar biodiversity patterns, with species richness being equal in primary and secondary forests, but with divergent species communities in different habitats. The D3-MOTU approach proved to be an efficient tool for biodiversity analyses. Conclusions/Significance: Our data illustrate that the use of MOTUs as a proxy for species can provide an alternative to morphospecies identification for the analysis of changes in community structure of hyperdiverse insect taxa. The efficient amplification of the D3-marker and the ability of the D3-MOTUs to reveal similar biodiversity patterns as analyses of morphospecies recommend its use in future molecular studies on biodiversity. [ABSTRACT FROM AUTHOR]

There is much evidence that climate is rapidly changing at a global scale, especially regarding mean annual temperatures, precipitations and evaporation. The consequences of this rapid environmental change on freshwater biota are still not clear, but undoubtedly they could be severe. Among the main effects of climate change, we can individuate the enhancement of water temperatures, particularly important for poikilothermic organisms, with the consequent diminution of dissolved oxygen, and the reduction of available habitats for most stenothermal organisms. Another consequence of climate change is the alteration of hydrologic cycles, with increasing intensity and frequency of extreme events such as droughts, especially in Southern Europe. This scenario could severely affect freshwater biota, especially in mid-latitude regions, such as the Italian peninsula: shifts in phenology, life cycles and distribution ranges are likely to be expected for many organisms, with the extinction of many sensitive species. In particular, species adapted to perennial and cold waters are likely to suffer reductions in their distribution range and also local extinctions, while more tolerant organisms may enlarge their distribution ranges. Global climate change may also promote and enhance invasions of alien species. In this work, concepts and hypotheses about the presumable impacts of climate change upon freshwater biota are reported, with examples and predictions related to the Italian situation. [ABSTRACT FROM AUTHOR]

In mountains, environmental gradients are steep in both terrestrial and aquatic systems, and climate change is causing upward shifts of physical and biological features of these gradients. Glacial streams are an interesting system to evaluate such shifts both because streams have a linear nature (for simplicity of analysis), and because the stream habitat will at least temporarily lengthen as it follows receding glaciers upward. The Tschierva Glacier, Swiss Alps, receded 482 m upstream from 1997 to 2008. We tested the null hypothesis that the physical and biological stream gradient below this glacier maintained the same structure between these time periods, but simply shifted upward following the glacial source. We compared longitudinal patterns of water temperature and zoobenthic community structure in 1997 and 2007-2008 during three seasons (spring, summer, fall) along the uppermost ca. 5 stream km. Upward shifts were evident, including colonization of the newly exposed stream reaches by cold-adapted taxa, and the appearance in 2007/2008 of four lower-altitude species that were previously absent. Overall, however, results rejected the null hypothesis, instead revealing significant changes in gradient structures. These included a more steeply increasing temperature profile downstream of the glacier and increased amplitude of seasonal community turnover in 2007/2008 vs. 1997. Long-term (1955-2007) flow records revealed increasing short-term and seasonal hydrologic variability, which might have influenced the increased intra-annual community variability. The steepening of the temperature gradient was likely caused by a warming lake-outlet tributary upon which glacial influence was diminished between 1997 and 2007/2008. These results suggest that upward-shifting gradients in glacial streams can involve complex interactions with other landscape elements and that local-scale climate response can progress even more rapidly than the rate of glacial recession. [ABSTRACT FROM AUTHOR]

The North-Western Mediterranean basin is well known for its high number of relictual endemic taxa, and has been indicated as one of the world’s major biodiversity hotspots at the species level. A possible contributing factor may be long-term persistence of populations and their prolonged stability. This study was designed to investigate the phylogeographic structure of three common species of the genus Lepidocyrtus (Hexapoda: Collembola), soil-dwelling arthropods characterized by limited dispersal capabilities and generally associated with forest habitats. We observed a remarkable geographic structure, with numerous deeply divergent genetic lineages occupying islands as well as mainland sites with no apparent gene flow among most sites, even across distances of only tens of kilometres. The reconstructed time frame for the evolution of these lineages suggests divergence between 5 and 15 Ma. This indicates a remarkably ancient origin and long-term persistence of individual lineages over a fine geographic scale despite the occurrence of abrupt sea level and climatic fluctuations in the area. This further suggests that currently recognized morphological species might be a serious underestimation of the true springtail biodiversity within this region. [ABSTRACT FROM AUTHOR]

The author reflects on the impact of climate change on the river ecosystem in Great Britain. The author claims that climate change has increased the river temperature in several locations in other continent, which include Asia, Australasia and North America. Moreover, quantifying and predicting the direct effects of climate change on species distribution, population process and life cycles is one of the key factors in developing adaptation strategies for rivers and their biodiversity.

Populations of metazoan microfauna (nematodes, rotifers and tardigrades) are patchily distributed on mountain outcrops penetrating the ice sheet (nunataks) in continental Antarctica. The abundance and fauna composition of microscopic animals vary greatly also among samples from similar types of habitats. Occurrence of similar seemingly habitable sites without microfauna and sites with various combinations of animal taxa indicates that stochastic colonization processes as well as local environmental factors and historical factors influence faunal composition in a specific habitable patch. The abundance of nematodes, rotifers and tardigrades in various combinations of co-occurrence was analyzed. One objective was to investigate if biotic interactions structuring these simple communities could be observed. The 368 samples analysed originate from three kinds of habitats, viz. mosses, ornithogenic soils and fellfield soils, obtained from 14 nunataks in Dronning Maud Land, East Antarctica. It is suggested that high population densities of any of the three animal groups, when they were found alone and lower densities, when they coexisted with other taxa could indicate the presence of competition or predation. However, the great variability in microfauna densities for similar habitable patches made it difficult to find significant differences among population densities in samples with varying complexity. [ABSTRACT FROM AUTHOR]