114 results
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2. The Edward Lawrie Tatum papers.
- Author
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Kopp C
- Subjects
- History, Modern 1601-, United States, Biochemistry history, Chemistry history, Genetics history, Libraries history
- Published
- 1981
3. Postgraduate Programs in Biochemistry and Molecular Biology: A Parallel Session at the IUBMB/PSBMB 2019 'Harnessing Interdisciplinary Education in Biochemistry and Molecular Biology' Conference
- Author
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Estacio, Rhodora C., Kron, Michael Andrew, Janlav, Munkhtsetseg, Yu, Gracia Fe B., and Macaulay, Janet O.
- Abstract
The conference session on Postgraduate Education in Biochemistry and Molecular Biology consisted of wide-ranging presentations and discussions. Approaches, issues, and solutions for postgraduate education and training in countries ranging from the Philippines to Mongolia and the United States were covered. [Paper presented at the joint International Union of Biochemistry and Molecular Biology (IUBMB) Education Conference and Philippine Society of Biochemistry and Molecular Biology (PSBMB) Annual Convention (46th) (Manila City, Philippines, Nov 13-15, 2019).]
- Published
- 2020
- Full Text
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4. When 'Safe' Means 'Dangerous': A Corpus Investigation of Risk Communication in the Media
- Author
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Tang, Chris and Rundblad, Gabriella
- Abstract
The mass media has an important role in informing the general public about emerging health risks. Content-based studies of risk communication in the media have revealed a tendency to exaggerate risks or simplify science, but linguistic studies in this area are still scarce. This paper outlines a corpus based investigation of media reporting on the discovery of minute amounts of Endocrine Disrupting Compounds (EDCs) and Pharmaceuticals and Personal Care Products (PPCPs) in drinking water. There is no concrete evidence that these residuals pose any threat to human health in such minute amounts, but the natural scientific uncertainty and professional risk language surrounding contaminants have sparked considerable media attention in both the US and the UK. In fact, these have lead to Congress-level discussions about changes to the way contaminants are regulated in the US. Comparing media reports that appeared in newspaper articles, magazines and web-based media in the UK and the US with those to appear on water company and public health organisation websites, our use of quantitative and qualitative corpus linguistic techniques revealed strikingly different patterns for the language used to represent contaminants and their risks. While water organisation reports demonstrated a clear tendency to downplay the probability and severity of the risk posed by contaminants, the linguistic and rhetorical features identified in media texts place the focus on the potentiality of contaminants as an unconfirmed threat to public and environmental health. We discuss the implications of these findings for the role of the media in the communication of health risks, and for communication about water contaminants.
- Published
- 2017
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5. Manuscript Resources in the History of Chemistry at the National Library of Medicine.
- Author
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Swann, John P.
- Subjects
HISTORY of chemistry ,BIOCHEMISTRY ,INFORMATION services ,HISTORY - Abstract
This paper discusses the chemistry manuscript collection in an institution that does not readily come to mind when searching for unpublished matter on the history of chemistry, the National Library of Medicine in Bethesda, Maryland. This collection includes personal papers of some twentieth-century American chemists and biochemists, lecture notes of British and American chemistry courses of the eighteenth, nineteenth, and twentieth centuries from a variety of institutional settings, and extended oral histories of some major figures in the history of modern chemistry and biochemistry. Among those represented in this collection are Joseph Black, Louis Pasteur, George B. Wood, Donald D. Van Slyke, and Albert Szent-Györgyi. In addition to illustrating the type of resources available, this paper also suggests some specific ways in which the collection can contribute to research in the history of chemistry. [ABSTRACT FROM AUTHOR]
- Published
- 1989
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6. The Demand for Healthy Eating: Supporting a Transformative Food 'Movement'
- Author
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Winson, Anthony
- Abstract
To the extent that social science scholarship engages real-world developments it remains grounded and better able to resist elite agendas. With this in mind this article argues for the critical encounter with what I argue is the most significant struggle around food and agriculture today--the amorphous and broad-based movement that strives to resist the further degradation of food environments and ensure healthy eating in society. This struggle is inevitably engaged with contemporary neoliberal agendas that have transformed and degraded food environments as they have privileged profit making over healthy diets. The article considers different sites where the struggle over healthy eating is taking place, both at the level of the state and more extensively in civil society. It considers the debate over bovine growth hormone in Canada and the wider efforts to turn around school food environments as examples of state-centered and civil-society struggles, respectively, that illustrate different dimensions of the healthy-eating movement today. In each case the agendas of transnational food corporations are seen to be directly contradicting efforts to ensure healthy diets. The article considers some notable successes among advocates of healthy eating, in the United States and Canada and most notably in Britain, and examines some of the factors that may account for this success. Overall, I argue that this struggle has the potential to challenge the hegemony of neoliberal discourse in fundamental ways. The article concludes with a call for academics, and rural sociologists in particular, to give a much greater priority to healthy-eating struggles, and considers a number of areas where academic practitioners can aid activists' efforts to resist the further degradation of diets and establish healthier food environments.
- Published
- 2010
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7. Making the paper: David Bartel & Nikolaus Rajewsky.
- Author
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Bartel, David and Rajewsky, Nikolaus
- Subjects
- *
RNA , *MOLECULAR biology , *NUCLEIC acids , *BIOCHEMISTRY , *BIOMOLECULES , *NUCLEOPROTEINS - Abstract
The article reports on the research conducted by David Bartel and Nikolaus Rajewsky regarding the implication of RNA to the production of cellular proteins in the U.S. When both intellectuals presented their work during the molecular biology symposium in Miami, they discovered that they were tackling the same issue. To unveil the mystery behind these cellular proteins, they need to look at changes in thousands of proteins at once and detect the differences in protein abundance. They found a glean insight into how miRNA act to fine tune the levels of thousands of proteins in a cell.
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- 2008
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8. Researcher Faces Prison for Fraud in NIH Grant Applications and Papers.
- Author
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Kintisch, Eli
- Subjects
- *
FEDERAL aid to research , *METABOLISM , *BIOCHEMISTRY , *GRANTS in aid (Public finance) , *ENDOWMENT of research , *PHYSIOLOGY - Abstract
This article reports that in the most extensive scientific misconduct case the National Institutes of Health (NIH) has seen in decades, a researcher formerly at the University of Vermont College of Medicine in Burlington has admitted in court documents to falsifying data in 15 federal grant applications and numerous published articles. Eric Poehlman, an expert on menopause, aging, and metabolism, faces up to 5 years in jail and a $250,000 fine and has been barred for life from receiving any U.S. research funding. Last week the Department of Justice announced that the total was 17, and that NIH and the U.S. Department of Agriculture had given Poehlman $2.9 million in grants based on fraudulent applications. In addition to pleading guilty to making a false statement on a federal grant application, Poehlman agreed to pay $180,000 to settle a civil suit with the government.
- Published
- 2005
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9. Inverting Organic and Biochemistry: A Curriculum Tweak that Benefits All
- Author
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Reingold, I. David
- Abstract
The approaches of teaching organic (full year) and biochemistry courses in the United States colleges and universities are described. The revised courses are probably more useful and relevant for the students as they maintain and improve the education of chemistry majors.
- Published
- 2004
10. Rationale, design, and protocol for a hybrid type 1 effectiveness-implementation trial of a proactive smoking cessation electronic visit for scalable delivery via primary care: the E-STOP trial.
- Author
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Fahey, Margaret C., Wahlquist, Amy E., Diaz, Vanessa A., Player, Marty S., Natale, Noelle, Sterba, Katherine R., Chen, Brian K., Hermes, Eric D. A., Carpenter, Mathew J., and Dahne, Jennifer
- Subjects
EVALUATION of human services programs ,EXPERIMENTAL design ,BIOCHEMISTRY ,SMOKING cessation ,CLINICAL trials ,COUNSELING ,CARBON monoxide ,MOTIVATION (Psychology) ,PHENOMENOLOGICAL biology ,PSYCHOLOGY ,DISEASES ,MEDICAL protocols ,PRIMARY health care ,TREATMENT effectiveness ,HARM reduction ,CONCEPTUAL models ,SMOKING ,ELECTRONIC health records ,MEDICAL appointments ,VARENICLINE ,ALGORITHMS ,TOBACCO - Abstract
Background: Cigarette smoking remains the leading cause of preventable disease and death in the United States. Primary care offers an ideal setting to reach adults who smoke cigarettes and improve uptake of evidence-based cessation treatment. Although U.S. Preventive Services Task Force Guidelines recommend the 5As model (Ask, Advise, Assess, Assist, Arrange) in primary care, there are many barriers to its implementation. Automated, comprehensive, and proactive tools are needed to overcome barriers. Our team developed and preliminarily evaluated a proactive electronic visit (e-visit) delivered via the Electronic Health Record patient portal to facilitate evidence-based smoking cessation treatment uptake in primary care, with promising initial feasibility and efficacy. This paper describes the rationale, design, and protocol for an ongoing Hybrid Type I effectiveness-implementation trial that will simultaneously assess effectiveness of the e-visit intervention for smoking cessation as well as implementation potential across diverse primary care settings. Methods: The primary aim of this remote five-year study is to examine the effectiveness of the e-visit intervention vs. treatment as usual (TAU) for smoking cessation via a clinic-randomized clinical trial. Adults who smoke cigarettes are recruited across 18 primary care clinics. Clinics are stratified based on their number of primary care providers and randomized 2:1 to either e-visit or TAU. An initial baseline e-visit gathers information about patient smoking history and motivation to quit, and a clinical decision support algorithm determines the best evidence-based cessation treatment to prescribe. E-visit recommendations are evaluated by a patient's own provider, and a one-month follow-up e-visit assesses cessation progress. Main outcomes include: (1) cessation treatment utilization (medication, psychosocial cessation counseling), (2) reduction in cigarettes per day, and (3) biochemically verified 7-day point prevalence abstinence (PPA) at six-months. We hypothesize that patients randomized to the e-visit condition will have better cessation outcomes (vs. TAU). A secondary aim evaluates e-visit implementation potential at patient, provider, and organizational levels using a mixed-methods approach. Implementation outcomes include acceptability, adoption, fidelity, implementation cost, penetration, and sustainability. Discussion: This asynchronous, proactive e-visit intervention could provide substantial benefits for patients, providers, and primary care practices and has potential to widely improve reach of evidence-based cessation treatment. Trial registration: NCT05493254. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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11. NATURALLY OCCURRING PROGESTERONE IN LOBLOLLY PINE (PINUS TAEDA L.): A MAJOR STEROID PRECURSOR OF ENVIRONMENTAL ANDROGENS.
- Author
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Carson, John D., Jenkins, Ronald L., Wilson, Elizabeth M., Howell, W. Mike, and Moore, Ray
- Subjects
PROGESTERONE ,ANDROSTENEDIONE ,ANDROGENS ,WESTERN mosquitofish ,STEROLS ,FUNGUS-bacterium relationships ,BIOCHEMISTRY ,LOBLOLLY pine ,ANABOLIC steroids - Abstract
Progesterone, androstenedione, and androstadienedione were previously identified in the water and sediment of the Fenholloway River (Taylor County, FL, USA), a river that contains populations of masculinized female mosquitofish downstream of a paper mill, at levels higher than those in the nearby Spring Creek. Plant sterols, such as β-sitosterol in mill effluent derived from pine tree pulp, were suggested to be metabolized by bacteria to progesterone and androgens to account for the masculinization phenomenon. The current study made use of standard solid-phase methanol extraction procedures, high-performance liquid chromatography, liquid chromatography-mass spectrometry, and a cell-based, androgen-receptor transcription assay to determine naturally occurring progesterone levels in mature pine trees. Progesterone concentrations in the loblolly pine (Pinus taeda L.) were 49.34 ± 4.1 nmol/g dry mature wood (15.5 ± 1.29 μg/g), 12.26 ± 1.78 nmol/g pine needles (3.85 ± 0.56 μg/g), and 3.81 ± 0.36 nmol/g pine bark (1.19 ± 0.11 μg/g). The results suggest that naturally occurring progesterone from pine wood pulp contributes to increased progesterone levels downstream of paper mill effluent discharges and may serve as the natural steroid precursor for environmental androgen production that causes masculinization of female mosquitofish. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
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12. Moving forward for the fiber industry.
- Author
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Santos, Ricardo B.
- Subjects
PAPER industry ,BIOMASS energy ,BIOCHEMISTRY - Abstract
The article discusses the integration of the pulp and paper industry into the biofuels and biochemicals industry in the U.S.
- Published
- 2015
13. Establishing Eco-SSLs for PAHs: Lessons Revealed from a Review of Literature on Exposure and Effects to Terrestrial Receptors.
- Author
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Kapustka, Lawrence A.
- Subjects
INVERTEBRATES ,POLYCYCLIC aromatic hydrocarbons ,BIOACCUMULATION ,BIOCHEMISTRY - Abstract
Polycyclic Aromatic Hydrocarbons (PAHs) were among the top priority Constituents of Potential Concern (CoPC) in the United States Environmental Protection Agency's (USEPA's) effort to set ecological soil-screening (Eco-SSL) values. Search strategies, acceptance criteria, and evaluation procedures were developed to address effects on plants, invertebrates, and wildlife. Systematic literature searches were conducted to obtain all relevant information on toxic response of terrestrial plants, invertebrates, and wildlife exposed to PAHs. More than 325 papers on PAHs were reviewed. Only 14 papers (one plant, three invertebrate, and ten wildlife) met the minimum criteria for use. Only eight PAH analytes had data that qualified for use in deriving Plant-, Invertebrate-, or Wildlife-SSLs. Only one SSL, (invertebrate, fluorene) could be derived based on the available data using the USEPA draft criteria. Rapid volatilization of lower molecular weight PAHs, generally low toxicity of persistent PAHs, limited potential for uptake by plants, binding to soil organic matter that lowers bioavailability, and low bioaccumulation by invertebrates may explain the general absence of documented adverse effects among terrestrial receptors exposed to PAHs. [ABSTRACT FROM AUTHOR]
- Published
- 2004
- Full Text
- View/download PDF
14. Exosomal miRs in Lung Cancer: A Mathematical Model.
- Author
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Lai, Xiulan and Friedman, Avner
- Subjects
LUNG cancer ,CANCER-related mortality ,MICRORNA ,MATHEMATICAL models ,BIOMARKERS - Abstract
Lung cancer, primarily non-small-cell lung cancer (NSCLC), is the leading cause of cancer deaths in the United States and worldwide. While early detection significantly improves five-year survival, there are no reliable diagnostic tools for early detection. Several exosomal microRNAs (miRs) are overexpressed in NSCLC, and have been suggested as potential biomarkers for early detection. The present paper develops a mathematical model for early stage of NSCLC with emphasis on the role of the three highest overexpressed miRs, namely miR-21, miR-205 and miR-155. Simulations of the model provide quantitative relationships between the tumor volume and the total mass of each of the above miRs in the tumor. Because of the positive correlation between these miRs in the tumor tissue and in the blood, the results of the paper may be viewed as a first step toward establishing a combination of miRs 21, 205, 155 and possibly other miRs as serum biomarkers for early detection of NSCLC. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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15. Paths for world-class universities in agricultural science.
- Author
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Kipchumba, Simon, Liu, Zhimin, and Liu, Lu
- Subjects
AGRICULTURAL education ,UNIVERSITY rankings ,ZOOLOGY ,ENVIRONMENTAL sciences ,BIOCHEMISTRY ,HIGHER education - Abstract
The top-ranking world-class universities in agricultural science denote those universities which are globally popular with agriculture-related subjects. The paper synthesizes the results of three different ranking scales (NTU, QS and ARWU) of top 50 universities in agriculture subject in 2013. The overlapped parts have been synchronized to derive the following four classifications: A (agricultural universities amalgamated with others to be an agricultural comprehensive university), R (agricultural universities re-named to be a comprehensive university), M (agricultural universities merged into other units to form or to be a part of a comprehensive university) and C (comprehensive university's agricultural colleges or departments all the time). The following conclusions can be drawn: the majority (up to 94 %) of these universities are comprehensive ones (combination of R, M and C), and only 6 % of them are purely named agricultural universities; merging, renaming and comprehending are the three paths of agricultural universities' development; and to be a world-class university, it is necessary to have more than 9 ESI 1 % advantage subjects among the following: Plant and Animal Science, Environmental Science/Ecology, Biology and Biochemistry, Clinical Medicine, Chemistry, Engineering, Agricultural Sciences, Social Sciences/General, Molecular Biology and Genetics, Pharmacology and Toxicology and Geosciences. It would be possible for specialized universities to be world-class universities in their fields by being a major concentration of teaching and research as well as extending other subjects through merging and renaming. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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16. Measuring the Speed of Aging across Population Subgroups.
- Author
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Sanderson, Warren C. and Scherbov, Sergei
- Subjects
POPULATION aging ,BIOMARKERS ,GRIP strength ,REGRESSION analysis ,EDUCATION - Abstract
People in different subgroups age at different rates. Surveys containing biomarkers can be used to assess these subgroup differences. We illustrate this using hand-grip strength to produce an easily interpretable, physical-based measure that allows us to compare characteristic-based ages across educational subgroups in the United States. Hand-grip strength has been shown to be a good predictor of future mortality and morbidity, and therefore a useful indicator of population aging. Data from the Health and Retirement Survey (HRS) were used. Two education subgroups were distinguished, those with less than a high school diploma and those with more education. Regressions on hand-grip strength were run for each sex and race using age and education, their interactions and other covariates as independent variables. Ages of identical mean hand-grip strength across education groups were compared for people in the age range 60 to 80. The hand-grip strength of 65 year old white males with less education was the equivalent to that of 69.6 (68.2, 70.9) year old white men with more education, indicating that the more educated men had aged more slowly. This is a constant characteristic age, as defined in the Sanderson and Scherbov article “The characteristics approach to the measurement of population aging” published 2013 in Population and Development Review. Sixty-five year old white females with less education had the same average hand-grip strength as 69.4 (68.2, 70.7) year old white women with more education. African-American women at ages 60 and 65 with more education also aged more slowly than their less educated counterparts. African American men with more education aged at about the same rate as those with less education. This paper expands the toolkit of those interested in population aging by showing how survey data can be used to measure the differential extent of aging across subpopulations. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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17. Mapping the history and current situation of research on John Cunningham virus -- a bibliometric analysis.
- Author
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Hua-chuan Zheng, Lei Yan, Lei Cui, Yi-fu Guan, and Yasuo Takano
- Subjects
COMMUNICABLE diseases ,BIOCHEMISTRY ,MOLECULAR biology ,ONCOLOGY ,VIRUSES - Abstract
Background: John Cunningham virus (JCV) constitutes a family of polyoma viruses, which plays important roles in the progressive multifocal leukoencephalopathy (PML) and tumorigenesis. However, no bibliometric investigation has been reported to guide the researchers and potential readers. Methods: Papers were collected from database Sci-expanded and Pubmed until May 22, 2008. The highly-productive authors, institutes and countries, highly-cited authors and journals were ranked. The highly-cited articles were subjected to co-citation and chronological analysis with highly-frequent MeSH words for co-occurrence analysis. Results: Until now, 1785 articles about JCV were indexed in Sci-expanded and 1506 in Pubmed. The main document type was original article. USA, Japan and Italy were the largest three producers about JCV. Temple University published 128 papers and ranked the top, followed by University of Tokyo. Khalili K and Yogo Y became the core authors due to more than 20 documents produced. Journal of Neurovirology published more than 15 papers and ranked the top. Padgett BL and Berger JR were the first two highly-cited authors. Journal of Virology and Journal of Neurovirology respectively ranked to the first two highly-cited journals. These top highly-cited articles were divided into 5 aspects: (1) The correlation between JC virus and tumors; (2) Causal correlation of JCV with PML; (3) Polyoma virus infection and its related diseases in renal-allograft recipients; (4) Detection of JCV antibody, oncogene and its encoding protein; (5) Genetics and molecular biology of JCV. The MeSH/subheadings were classified into five groups: (1) JCV and virus infectious diseases; (2) JCV pathogenicity and pathological appearance of PML; (3) JCV isolation and detection; (4) Immunology of JCV and PML; (5) JCV genetics and tumors. Conclusion: JCV investigation mainly focused on its isolation and detection, as well as its correlation with PML and tumors. Establishment of transgenic animal model using JCV T antigen would be a hopeful and useful project in the further study. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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18. The value of applying molecular biology tools in environmental engineering: Academic and industry perspective in the USA.
- Author
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Oerther, Daniel B. and Love, Nancy G.
- Subjects
MOLECULAR biology ,BIOCHEMISTRY ,ENVIRONMENTAL engineering ,ENGINEERING - Abstract
The integration of molecular biology tools in environmental engineering is a challenge. We discuss our views on the following four critical issues: (i) faculty career development, (ii) tool standardization, (iii) teaching, and (iv) the application of molecular biology tools in practice. For (i), we suggest that administrators and faculty need to understand the special challenges inherent to research and teaching within this highly interdisciplinary area. Furthermore, we suggest preparing two white papers aimed at educating administrators in universities and agencies. For (ii), we conclude that, because molecular biology tools are still in a state of rapid development, proposing standards at this time is premature. In the future, standards for widely applied tools should be in an on-line, peer-reviewed format. Concerning (iii), we believe that molecular biology should be taught only to the degree needed to achieve program goals. For example, environmental engineering practitioners only need to know the vocabulary and basic concepts of molecular biology tools, not be experts at doing them hands on. To help engineering students gain the right level and type of information, learning modules should be developed for them. Finally, although engineering successes applying molecular biology tools are available (iv), the biggest value will come when the tools are fully integrated with practice. Therefore, we encourage the creation of a demonstration project to document the value of applying molecular biology tools in environmental engineering. [ABSTRACT FROM AUTHOR]
- Published
- 2003
- Full Text
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19. Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction.
- Author
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Magee, Daniel, Suchard, Marc A., and Scotch, Matthew
- Subjects
INFLUENZA A virus, H3N2 subtype ,BAYESIAN analysis ,PHYLOGEOGRAPHY ,PANDEMICS - Abstract
Ancestral state reconstruction in Bayesian phylogeography of virus pandemics have been improved by utilizing a Bayesian stochastic search variable selection (BSSVS) framework. Recently, this framework has been extended to model the transition rate matrix between discrete states as a generalized linear model (GLM) of genetic, geographic, demographic, and environmental predictors of interest to the virus and incorporating BSSVS to estimate the posterior inclusion probabilities of each predictor. Although the latter appears to enhance the biological validity of ancestral state reconstruction, there has yet to be a comparison of phylogenies created by the two methods. In this paper, we compare these two methods, while also using a primitive method without BSSVS, and highlight the differences in phylogenies created by each. We test six coalescent priors and six random sequence samples of H3N2 influenza during the 2014–15 flu season in the U.S. We show that the GLMs yield significantly greater root state posterior probabilities than the two alternative methods under five of the six priors, and significantly greater Kullback-Leibler divergence values than the two alternative methods under all priors. Furthermore, the GLMs strongly implicate temperature and precipitation as driving forces of this flu season and nearly unanimously identified a single root state, which exhibits the most tropical climate during a typical flu season in the U.S. The GLM, however, appears to be highly susceptible to sampling bias compared with the other methods, which casts doubt on whether its reconstructions should be favored over those created by alternate methods. We report that a BSSVS approach with a Poisson prior demonstrates less bias toward sample size under certain conditions than the GLMs or primitive models, and believe that the connection between reconstruction method and sampling bias warrants further investigation. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
20. Serum uPAR as Biomarker in Breast Cancer Recurrence: A Mathematical Model.
- Author
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Hao, Wenrui and Friedman, Avner
- Subjects
BREAST cancer risk factors ,TUMOR markers ,BLOOD serum analysis ,CANCER relapse ,CANCER ,BREAST cancer patients ,MATHEMATICAL models - Abstract
There are currently over 2.5 million breast cancer survivors in the United States and, according to the American Cancer Society, 10 to 20 percent of these women will develop recurrent breast cancer. Early detection of recurrence can avoid unnecessary radical treatment. However, self-examination or mammography screening may not discover a recurring cancer if the number of surviving cancer cells is small, while biopsy is too invasive and cannot be frequently repeated. It is therefore important to identify non-invasive biomarkers that can detect early recurrence. The present paper develops a mathematical model of cancer recurrence. The model, based on a system of partial differential equations, focuses on tissue biomarkers that include the plasminogen system. Among them, only uPAR is known to have significant correlation to its concentration in serum and could therefore be a good candidate for serum biomarker. The model includes uPAR and other associated cytokines and cells. It is assumed that the residual cancer cells that survived primary cancer therapy are concentrated in the same location within a region with a very small diameter. Model simulations establish a quantitative relation between the diameter of the growing cancer and the total uPAR mass in the cancer. This relation is used to identify uPAR as a potential serum biomarker for breast cancer recurrence. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
21. Mean Recency Period for Estimation of HIV-1 Incidence with the BED-Capture EIA and Bio-Rad Avidity in Persons Diagnosed in the United States with Subtype B.
- Author
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Hanson, Debra L., Song, Ruiguang, Masciotra, Silvina, Hernandez, Angela, Dobbs, Trudy L., Parekh, Bharat S., Owen, S. Michele, and Green, Timothy A.
- Subjects
HIV infections ,DISEASE incidence ,BIOMARKERS ,SEROCONVERSION ,DISEASE duration - Abstract
HIV incidence estimates are used to monitor HIV-1 infection in the United States. Use of laboratory biomarkers that distinguish recent from longstanding infection to quantify HIV incidence rely on having accurate knowledge of the average time that individuals spend in a transient state of recent infection between seroconversion and reaching a specified biomarker cutoff value. This paper describes five estimation procedures from two general statistical approaches, a survival time approach and an approach that fits binomial models of the probability of being classified as recently infected, as a function of time since seroconversion. We compare these procedures for estimating the mean duration of recent infection (MDRI) for two biomarkers used by the U.S. National HIV Surveillance System for determination of HIV incidence, the Aware BED EIA HIV-1 incidence test (BED) and the avidity-based, modified Bio-Rad HIV-1/HIV-2 plus O ELISA (BRAI) assay. Collectively, 953 specimens from 220 HIV-1 subtype B seroconverters, taken from 5 cohorts, were tested with a biomarker assay. Estimates of MDRI using the non-parametric survival approach were 198.4 days (SD 13.0) for BED and 239.6 days (SD 13.9) for BRAI using cutoff values of 0.8 normalized optical density and 30%, respectively. The probability of remaining in the recent state as a function of time since seroconversion, based upon this revised statistical approach, can be applied in the calculation of annual incidence in the United States. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
22. A bibliometric analysis of researches on flap endonuclease 1 from 2005 to 2019.
- Author
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Wei, Qiaochu, Shen, Jiming, Wang, Dongni, Han, Xu, Shi, Jing, Zhao, Lei, and Teng, Yuee
- Subjects
BIOCHEMISTRY ,BIBLIOMETRICS ,MOLECULAR biology ,CYTOLOGY ,PROTEIN-protein interactions ,HISTORY ,ESTERASES - Abstract
Background: Flap endonuclease 1 (FEN1) is a structure-specific nuclease that plays a role in a variety of DNA metabolism processes. FEN1 is important for maintaining genomic stability and regulating cell growth and development. It is associated with the occurrence and development of several diseases, especially cancers. There is a lack of systematic bibliometric analyses focusing on research trends and knowledge structures related to FEN1.Purpose: To analyze hotspots, the current state and research frontiers performed for FEN1 over the past 15 years.Methods: Publications were retrieved from the Web of Science Core Collection (WoSCC) database, analyzing publication dates ranging from 2005 to 2019. VOSviewer1.6.15 and Citespace5.7 R1 were used to perform a bibliometric analysis in terms of countries, institutions, authors, journals and research areas related to FEN1. A total of 421 publications were included in this analysis.Results: Our findings indicated that FEN1 has received more attention and interest from researchers in the past 15 years. Institutes in the United States, specifically the Beckman Research Institute of City of Hope published the most research related to FEN1. Shen BH, Zheng L and Bambara Ra were the most active researchers investigating this endonuclease and most of this research was published in the Journal of Biological Chemistry. The main scientific areas of FEN1 were related to biochemistry, molecular biology, cell biology, genetics and oncology. Research hotspots included biological activities, DNA metabolism mechanisms, protein-protein interactions and gene mutations. Research frontiers included oxidative stress, phosphorylation and tumor progression and treatment.Conclusion: This bibliometric study may aid researchers in the understanding of the knowledge base and research frontiers associated with FEN1. In addition, emerging hotspots for research can be used as the subjects of future studies. [ABSTRACT FROM AUTHOR]- Published
- 2021
- Full Text
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23. Sustaining the development and implementation of student-centered teaching nationally: the importance of a community of practice.
- Author
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Murray TA, Higgins P, Minderhout V, and Loertscher J
- Subjects
- Faculty, Problem-Based Learning, Students, United States, Biochemistry education, Education, Professional methods, Information Dissemination methods
- Abstract
Although the idea of using a workshop to educate potential users about a set of materials or techniques is not new, the workshops described here go beyond simple dissemination and create ongoing communities of practice that support widespread and sustained improvement in the biochemistry classroom. The degree to which pedagogical innovations improve student learning on a national level depends on how broadly they are disseminated and how they are implemented and sustained. Workshops can be effective in disseminating ideas and techniques, but they often fail to sustain implementation. This paper describes Core Collaborators Workshops (CCWs) that were specifically designed for biochemistry faculty to improve the quality of active learning materials, support faculty in transforming their classrooms, and disseminate these efforts nationally. This CCW model proved very effective to date as shown by the fact that, 8 months after the last CCW, all workshop participants reported using at least some of the instructional materials discussed during the workshop. In addition, participants remarked that the superior community building and direct mentoring available through the CCWs greatly increased their confidence in implementing this new curricular approach and has made them more likely to act as leaders themselves., (Copyright © 2011 Wiley Periodicals, Inc.)
- Published
- 2011
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24. Off flavours in large waterbodies: physics, chemistry and biology in synchrony.
- Author
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Watson SB, Charlton M, Rao YR, Howell T, Ridal J, Brownlee B, Marvin C, and Millard S
- Subjects
- Canada, Ecosystem, Excipients, Fresh Water, Rivers, United States, Water Movements, Water Pollution, Biochemistry methods, Environmental Monitoring methods, Water chemistry, Water Pollutants, Chemical analysis, Water Supply
- Abstract
The Laurentian Great Lakes of North America are a drinking water source for millions of Canadian and US consumers. These waterbodies have undergone extensive change over the past century as a result of widespread degradation and remediation. Many of the Lakes are prone to taste and odour (T&O), and although these outbreaks have been poorly monitored, evidence suggests that they are increasing in frequency. Tracing and controlling T&O in such large systems presents a challenging task, due to their physical size and complexity. This paper presents an overview of recent investigative and management approaches to T&O in Lake Ontario and its outflow, the St. Lawrence River. We have identified three distinct patterns of T&O in these source-waters, caused by geosmin and 2-methylisoborneol and differing in their planktonic and benthic sources, and temporal and spatial dynamics. Each pattern has required a different approach by scientists and management, in partnership with the water industry. We have shown these T&O outbreaks are caused and moderated by physical, chemical and biological mechanisms over a spectrum of spatial and temporal scales. Canadian municipalities affected by these outbreaks have been key to the investigation of the links between T&O and ecosystem processes with the aim to develop more proactive water treatment and long-term management.
- Published
- 2007
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25. John Tileston Edsall: some selected biography and personal reminiscences.
- Author
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Gurd FR and Richards FM
- Subjects
- Biochemistry education, Biochemistry ethics, Chemistry, Physical history, History, 20th Century, United States, Biochemistry history
- Abstract
This paper has been written in honor of John T. Edsall. Its purpose is to review briefly the status of science during his active years and the combination of personal qualities and upbringing which resulted in his enormous impact on the field of biochemistry. There was an unusual combination of deep knowledge and interest in many intellectual areas by no means restricted to science; the large number of individuals he met by intent or by chance, many to become fast friends for life, who themselves became distinguished in science; and last but not least his influence on science policy through very clear statements and his moral positions on questions of the day.
- Published
- 2003
- Full Text
- View/download PDF
26. The American Psychiatric Association and the history of psychiatry.
- Author
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Hirshbein, Laura
- Subjects
HISTORY of psychiatry ,COMMITTEES ,HISTORICAL analysis ,MEDICAL sciences ,BIOCHEMISTRY ,PSYCHOANALYSIS ,PSYCHODYNAMIC psychotherapy ,20TH century medical history - Abstract
The history committee within the American Psychiatric Association was actively involved in the history of psychiatry in the early decades of the twentieth century, as well as from 1942 to 2009. This paper explores the role of this committee in the context of changes in the psychiatric profession over the twentieth century. [ABSTRACT FROM PUBLISHER]
- Published
- 2011
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- View/download PDF
27. How protein chemists learned about the hydrophobic factor.
- Author
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Tanford C
- Subjects
- Europe, History, 20th Century, Hydrogen Bonding, Models, Chemical, Thermodynamics, United States, Biochemistry history, Protein Conformation, Protein Folding
- Abstract
It is generally accepted today that the hydrophobic force is the dominant energetic factor that leads to the folding of polypeptide chains into compact globular entities. This principle was first explicitly introduced to protein chemists in 1938 by Irving Langmuir, past master in the application of hydrophobicity to other problems, and was enthusiastically endorsed by J.D. Bernal. But both proposal and endorsement came in the course of a debate about a quite different structural principle, the so-called "cyclol hypothesis" proposed by D. Wrinch, which soon proved to be theoretically and experimentally unsupportable. Being a more tangible idea, directly expressed in structural terms, the cyclol hypothesis received more attention than the hydrophobic principle and the latter never actually entered the mainstream of protein science until 1959, when it was thrust into the limelight in a lucid review by W. Kauzmann. A theoretical paper by H.S. Frank and M. Evans, not itself related to protein folding, probably played a major role in the acceptance of the hydrophobicity concept by protein chemists because it provided a crude but tangible picture of the origin of hydrophobicity per se in terms of water structure.
- Published
- 1997
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- View/download PDF
28. Assessing the Relationship Between Environmental Lead Concentrations and Adult Blood Lead Levels.
- Author
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Bowers, Teresa S., Beck, Barbara D., and Karam, Hala S.
- Subjects
LEAD in the body ,ENVIRONMENTAL impact analysis ,BLOOD testing ,ADULTS ,INGESTION ,ABSORPTION (Physiology) ,BIOCHEMISTRY ,BIOLOGICAL transport ,PHYSIOLOGY - Abstract
This paper presents a model for predicting blood lead levels in adults who are exposed to elevated environmental levels of lead. The model assumes a baseline blood lead level based on average blood lead levels for adults described in two recent U.S. studies. The baseline blood lead level in adults arises primarily from exposure to lead in diet. Media-specific ingestion and absorption parameters are assessed for the adult population, and a biokinetic slope factor that relates uptake of lead into the body to blood lead levels is estimated. These parameters are applied to predict blood lead levels for adults exposed to a hypothetical site with elevated lead levels in soil, dust and air. Blood lead levels ranging from approximately 3-57 µg/dl are predicted, depending on the exposure scenarios and assumptions. [ABSTRACT FROM AUTHOR]
- Published
- 1994
- Full Text
- View/download PDF
29. Matthew J. Friedman and the VA National PTSD Brain Bank: New Transcriptomic Insight into PTSD Pathophysiology.
- Author
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Young, Keith A.
- Subjects
BRAIN ,BIOCHEMISTRY ,TISSUE banks ,PHENOMENOLOGICAL biology ,MILITARY medicine ,POST-traumatic stress disorder ,MAGNETIC resonance imaging ,GENE expression profiling ,MENTAL depression ,MEDICAL research - Abstract
The article discusses Posttraumatic stress disorder (PTSD) pathophysiology. It mentions need of the development of psychotherapeutic treatments for PTSD as well as developing and improving psychiatric care practices. It mentions developing better treatments for PTSD fueled by more selective targeting of PTSD brain abnormalities.
- Published
- 2022
- Full Text
- View/download PDF
30. Olfactory Politics in Black Diasporic Art.
- Author
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Hsu, Hsuan L.
- Subjects
HISTORY of racism ,PSYCHOLOGY of Black people ,ART ,IMMIGRANTS ,AESTHETICS ,CULTURE ,BIOCHEMISTRY ,SPIRITUALITY ,COLOR vision ,PRACTICAL politics ,PHENOMENOLOGICAL biology ,PERFUMES ,SMELL ,ARTISTS ,EXHIBITIONS ,AFRICAN Americans ,DEODORANTS - Abstract
The article discusses Olfactory Politics in Black Diasporic Art. Topic discussed includes olfactory experiments of Black artists which requires reframing olfactory aesthetics and target the deodorized Western art world but also as a struggle over everyday encounters with smells that have profound cultural and biochemical consequences.
- Published
- 2022
31. What ET will look like and why should we care
- Author
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Shostak, Seth
- Subjects
- *
PLANETARY atmospheres , *EXTRATERRESTRIAL beings , *BIOCHEMISTRY , *ARTIFICIAL intelligence , *COMMUNICATION & technology - Abstract
Abstract: Our experiments to find extraterrestrial life are predicated on the assumption that it is most likely to be found on so-called “habitable worlds.” These are planets and moons where surface liquid water exists, and atmospheres of light gases are found. Our searches presume that life on other worlds has a biochemistry at least somewhat similar to our own. While these postulates might be our best guide for finding biology, they could be misleading us in the search for extraterrestrial intelligence (SETI). Timescale arguments suggest that shortly after a sentient species invents the technology for communication, it develops synthetic intelligence. Consequently, SETI’s targeted searches of star systems that might have habitable planets in the conventional sense may be chasing a very short-lived prey. In this paper, we discuss what the implications of post-biological intelligence might have in directing our SETI experiments. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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- View/download PDF
32. Building a Structure for Doing Content-Based Education Research at the Tertiary Level.
- Author
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Bodner, George M., Karatas, Faik Ö., and Rud, Anthony G.
- Subjects
GRADUATE education ,EDUCATION research ,BIOCHEMISTRY ,PHYSICAL & theoretical chemistry ,ENGINEERING education ,UNITED States education system - Abstract
It has been slightly more than 25 years since the Division of Chemical Education was established within the Department of Chemistry at Purdue University. This graduate program was created to promote content-based education research that focused on the particular problems of teaching and learning in chemistry. Another goal of this program is to increase the amount of research being done on the teaching and learning of chemistry in advanced-level undergraduate courses, such as organic and physical chemistry, or biochemistry. A similar approach has recently been adopted within the College of Engineering at Purdue through the creation of the first School of Engineering Education in the U.S. in order to facilitate rigorous education research that goes beyond the limits of traditional engineering education. We believe that content-based research such as the work being carried out in these programs provides one of the best ways to improve teaching and learning at the tertiary level in order to meet the needs of our global and local society. This paper therefore describes these two content-based education research programs at Purdue University in order to provide models for other institutions to apply as they think about ways to meet their nation's needs. [ABSTRACT FROM AUTHOR]
- Published
- 2008
33. An Enthusiasm for Metabolism.
- Author
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Ames, Bruce N.
- Subjects
- *
BIOCHEMISTRY , *BIOCHEMISTS - Abstract
Recounts the author's career in the field of biochemistry in the U.S. Education; Focus of biochemistry research; Doctoral papers; Work as a biochemistry professor; Professional accomplishments.
- Published
- 2003
- Full Text
- View/download PDF
34. Book Corner.
- Subjects
RESEARCH ,SOCIAL services ,FUNDRAISING ,BIOCHEMISTRY ,PHARMACOLOGY - Abstract
A list of books about science, health and medical research in the U.S. is presented including "Professional Accountability for Social Work Practice: A Search for Concepts and Guideline," edited by Helen Rehr, "Fund Raising: The Guide to Raising Money From Private Sources," by Thomas E. Broce, and "Biochemistry and Pharmacology of Ethanol," edited by Edward Majchrowics and Ernest P. Noble.
- Published
- 1980
35. Association between long-term adherence to class-I recommended medications and risk for potentially preventable heart failure hospitalizations among younger adults.
- Author
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Chang, Tiffany E., Park, Soyoun, Yang, Quanhe, Loustalot, Fleetwood, Butler, Javed, and Ritchey, Matthew D.
- Subjects
ALDOSTERONE antagonists ,NEPRILYSIN ,YOUNG adults ,HEART failure ,MINERALOCORTICOID receptors ,ANGIOTENSIN converting enzyme ,PATIENT compliance - Abstract
Background: Five guideline-recommended medication categories are available to treat patients who have heart failure (HF) with reduced ejection fraction. However, adherence to these medications is often suboptimal, which places patients at increased risk for poor health outcomes, including hospitalization. We aimed to examine the association between adherence to these medications and potentially preventable HF hospitalizations among younger insured adults with newly diagnosed HF. Methods and results: Using the 2008–2012 IBM MarketScan Commercial database, we followed 26,439 individuals aged 18–64 years with newly diagnosed HF and calculated their adherence (using the proportion of days covered (PDC) algorithm) to the five guideline-recommended medication categories: angiotensin-converting enzyme inhibitors/angiotensin-receptor blockers; beta blockers; aldosterone receptor antagonists; hydralazine; and isosorbide dinitrate. We determined the association between PDC and long-term preventable HF hospitalizations (observation years 3–5) as defined by the United States (U.S.) Agency for Healthcare Research and Quality. Overall, 49.0% of enrollees had good adherence (PDC≥80%), which was more common among enrollees who were older, male, residing in higher income counties, initially diagnosed with HF in an outpatient setting, and who filled prescriptions for fewer medication categories assessed. Adherence differed by medication category and was lowest for isosorbide dinitrate (PDC = 60.7%). In total, 7.6% of enrollees had preventable HF hospitalizations. Good adherers, compared to poor adherers (PDC<40%), were 15% less likely to have a preventable hospitalization (HR 0.85, 95% confidence interval, 0.75–0.96). Conclusion: We found that approximately half of insured U.S. adults aged 18–64 years with newly diagnosed HF had good adherence to their HF medications. Patients with good adherence, compared to those with poor adherence, were less likely to have a potentially preventable HF hospitalization 3–5 years after their initial diagnosis. Because HF is a chronic condition that requires long-term management, future studies may want to assess the effectiveness of interventions in sustaining adherence. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
36. Compositional analyses of the associations between sedentary time, different intensities of physical activity, and cardiometabolic biomarkers among children and youth from the United States.
- Author
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Carson, Valerie, Tremblay, Mark S., Chaput, Jean-Philippe, McGregor, Duncan, and Chastin, Sebastien
- Subjects
HEALTH & Nutrition Examination Survey ,BIOLOGICAL tags ,PHYSICAL activity - Abstract
Introduction: Compositional data analysis is one appropriate method for co-dependent data, even when data are collected for a subdivision of the 24-hour period, such as the waking day. Objectives were to use compositional analyses to examine the combined and relative associations of sedentary time (ST), light-intensity physical activity (LPA), moderate-intensity physical activity (MPA), and vigorous-intensity physical activity (VPA) with cardiometabolic biomarkers in a representative sample of children and youth. Methods: This cross-sectional study included 2544 participants aged 6–17 years from the 2003–2006 United States National Health and Nutrition Examination Survey. ST (<100 counts per minute), LPA (100 counts per minute to <4 METs; Freedson age-specific equation), MPA (4 to <7 METs), and VPA (≥7 METs) were accelerometer-derived. Cardiometabolic biomarkers included waist circumference, body mass index (BMI) z-score, HDL-cholesterol, C-reactive protein, and blood pressure. Triglycerides, glucose, insulin, and LDL-cholesterol were measured in a fasting sub-sample of adolescents (n = 670). Compositional linear regression models were conducted. Results: The composition of ST, LPA, MPA, and VPA was significantly associated with BMI z-score, log waist circumference, systolic and diastolic blood pressure, HDL-cholesterol, and log plasma glucose (variance explained: 1–29%). Relative to the other three behaviors, VPA was negatively associated with BMI z-score (γVPA = -0.206, p = 0.005) and waist circumference (γVPA = -0.03, p = 0.001). Conversely, ST was positively associated with waist circumference (γST = 0.029, p = 0.013). ST and VPA were also positively associated with diastolic blood pressure (γST = 2.700, p = 0.018; γVPA = 1.246, p = 0.038), relative to the other behaviors, whereas negative associations were observed for LPA (γLPA = -2.892, p = 0.026). Finally, VPA was positively associated with HDL-cholesterol, relative to other behaviors (γVPA = 0.058, p<0.001). Conclusions: The ST and physical activity composition appears important for many aspects of cardiometabolic health in children and youth. Compositions with more time in higher-intensity activities may be better for some aspects of cardiometabolic health. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
37. Using targeted next-generation sequencing to characterize genetic differences associated with insecticide resistance in Culex quinquefasciatus populations from the southern U.S.
- Author
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Kothera, Linda, Phan, John, Ghallab, Enas, Delorey, Mark, Clark, Rebecca, and Savage, Harry M.
- Subjects
CULEX quinquefasciatus ,INSECTICIDE resistance ,DNA copy number variations ,WEST Nile virus ,SINGLE nucleotide polymorphisms ,MOSQUITO control - Abstract
Resistance to insecticides can hamper the control of mosquitoes such as Culex quinquefasciatus, known to vector arboviruses such as West Nile virus and others. The strong selective pressure exerted on a mosquito population by the use of insecticides can result in heritable genetic changes associated with resistance. We sought to characterize genetic differences between insecticide resistant and susceptible Culex quinquefasciatus mosquitoes using targeted DNA sequencing. To that end, we developed a panel of 122 genes known or hypothesized to be involved in insecticide resistance, and used an Ion Torrent PGM sequencer to sequence 125 unrelated individuals from seven populations in the southern U.S. whose resistance phenotypes to permethrin and malathion were known from previous CDC bottle bioassay testing. Data analysis consisted of discovering SNPs (Single Nucleotide Polymorphism) and genes with evidence of copy number variants (CNVs) statistically associated with resistance. Ten of the seventeen genes found to be present in higher copy numbers were experimentally validated with real-time PCR. Of those, six, including the gene with the knock-down resistance (kdr) mutation, showed evidence of a ≥ 1.5 fold increase compared to control DNA. The SNP analysis revealed 228 unique SNPs that had significant p-values for both a Fisher’s Exact Test and the Cochran-Armitage Test for Trend. We calculated the population frequency for each of the 64 nonsynonymous SNPs in this group. Several genes not previously well characterized represent potential candidates for diagnostic assays when further validation is conducted. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
38. Educational attainment and cardiovascular disease in the United States: A quasi-experimental instrumental variables analysis.
- Author
-
Hamad, Rita, Nguyen, Thu T., Bhattacharya, Jay, Glymour, M. Maria, and Rehkopf, David H.
- Subjects
EDUCATIONAL attainment ,EDUCATIONAL mobility ,HEALTH & Nutrition Examination Survey ,DISEASE progression ,CARDIOVASCULAR diseases - Abstract
Background: There is ongoing debate about whether education or socioeconomic status (SES) should be inputs into cardiovascular disease (CVD) prediction algorithms and clinical risk adjustment models. It is also unclear whether intervening on education will affect CVD, in part because there is controversy regarding whether education is a determinant of CVD or merely correlated due to confounding or reverse causation. We took advantage of a natural experiment to estimate the population-level effects of educational attainment on CVD and related risk factors.Methods and Findings: We took advantage of variation in United States state-level compulsory schooling laws (CSLs), a natural experiment that was associated with geographic and temporal differences in the minimum number of years that children were required to attend school. We linked census data on educational attainment (N = approximately 5.4 million) during childhood with outcomes in adulthood, using cohort data from the 1992-2012 waves of the Health and Retirement Study (HRS; N = 30,853) and serial cross-sectional data from 1971-2012 waves of the National Health and Nutrition Examination Survey (NHANES; N = 44,732). We examined self-reported CVD outcomes and related risk factors, as well as relevant serum biomarkers. Using instrumental variables (IV) analysis, we found that increased educational attainment was associated with reduced smoking (HRS β -0.036, 95%CI: -0.06, -0.02, p < 0.01; NHANES β -0.032, 95%CI: -0.05, -0.02, p < 0.01), depression (HRS β -0.049, 95%CI: -0.07, -0.03, p < 0.01), triglycerides (NHANES β -0.039, 95%CI: -0.06, -0.01, p < 0.01), and heart disease (HRS β -0.025, 95%CI: -0.04, -0.002, p = 0.01), and improvements in high-density lipoprotein (HDL) cholesterol (HRS β 1.50, 95%CI: 0.34, 2.49, p < 0.01; NHANES β 0.86, 95%CI: 0.32, 1.48, p < 0.01), but increased BMI (HRS β 0.20, 95%CI: 0.002, 0.40, p = 0.05; NHANES β 0.13, 95%CI: 0.01, 0.32, p = 0.05) and total cholesterol (HRS β 2.73, 95%CI: 0.09, 4.97, p = 0.03). While most findings were cross-validated across both data sets, they were not robust to the inclusion of state fixed effects. Limitations included residual confounding, use of self-reported outcomes for some analyses, and possibly limited generalizability to more recent cohorts.Conclusions: This study provides rigorous population-level estimates of the association of educational attainment with CVD. These findings may guide future implementation of interventions to address the social determinants of CVD and strengthen the argument for including educational attainment in prediction algorithms and primary prevention guidelines for CVD. [ABSTRACT FROM AUTHOR]- Published
- 2019
- Full Text
- View/download PDF
39. Citizen sociolinguistics: A new method to understand fat talk.
- Author
-
Agostini, Gina, SturtzSreetharan, Cindi, Wutich, Amber, Williams, Deborah, and Brewis, Alexandra
- Subjects
SOCIOLINGUISTICS ,SOCIOCULTURAL factors ,ORAL communication ,PROFESSIONAL relationships ,RESEARCH teams - Abstract
Fat talk and citizen science: Fat talk is a spontaneous verbal interaction in which interlocutors make self-disparaging comments about the body, usually as a request for assessment. Fat talk often reflects concerns about the self that stem from broader sociocultural factors. It is therefore an important target for sociocultural linguistics. However, real-time studies of fat talk are uncommon due to the resource and time burdens required to capture these fleeting utterances. This limits the scope of data produced using standard sociolinguistic methods. Citizen science may alleviate these burdens by producing a scale of social observation not afforded via traditional methods. Here we present a proof-of-concept for a novel methodology, citizen sociolinguistics. This research approach involves collaborations with citizen researchers to capture forms of conversational data that are typically inaccessible, including fat talk. Aims and outcomes: This study had two primary aims. Aim 1 focused on scientific output, testing a novel research strategy wherein citizen sociolinguists captured fat talk data in a diverse metropolitan region (Southwestern United States). Results confirm that citizen sociolinguistic research teams captured forms of fat talk that mirrored the scripted responses previously reported. However, they also capture unique forms of fat talk, likely due to greater diversity in sample and sampling environments. Aim 2 focused on the method itself via reflective exercises shared by the citizen sociolinguists throughout the project. In addition to confirming that the citizen sociolinguistic method produces reliable, scientifically valid data, we contend that citizen sociolinguist inclusion has broader scientific benefits which include applied scientific training, fostering sustained relationships between professional researchers and the public, and producing novel, meaningful scientific output that advances professional discourse. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
40. Harambee!: A pilot mixed methods study of integrated residential HIV testing among African-born individuals in the Seattle area.
- Author
-
Roberts, D Allen, Kerani, Roxanne, Tsegaselassie, Solomon, Abera, Seifu, Lynes, Ashley, Scott, Emily, Chung, Karen, Yohannes, Ermias, Basualdo, Guiomar, Stekler, Joanne D., Barnabas, Ruanne, James, Jocelyn, Cooper-Ashford, Shelley, and Patel, Rena
- Subjects
HIV ,SOCIAL stigma ,HEALTH fairs ,BODY mass index ,HEALTH education ,NON-communicable diseases - Abstract
Background: African-born individuals in the U.S. are disproportionately affected by HIV yet have low HIV testing rates. We conducted a mixed methods study to assess the uptake and feasibility of a novel strategy for integrating HIV testing into residential health fairs among African-born individuals in Seattle, WA. Methods: From April to May 2018, we held six health fairs at three apartment complexes with high numbers of African-born residents. Fairs included free point-of-care screening for glucose, cholesterol, body mass index, blood pressure, and HIV, as well as social services and health education. The health fairs were hosted in apartment complex common areas with HIV testing conducted in private rooms. Health fair participants completed a series of questionnaires to evaluate demographics, access to health services, and HIV testing history. We conducted 18 key informant interviews (KIIs) with health fair participants and community leaders to identify barriers to HIV testing among African-born individuals. Results: Of the 111 adults who accessed at least one service at a health fair, 92 completed questionnaires. Fifty-five (61%) were female, 48 (52%) were born in Africa, and 55 (63%) had health insurance. Half of African-born participants accepted HIV testing; all tested negative. The most common reasons for declining testing were lack of perceived risk for HIV and knowledge of HIV status. We identified a high prevalence of non-communicable diseases (NCDs) among health fair participants; among those tested, 77% (55/71) were overweight/obese, 39% (31/79) had blood pressure > 140/90 mmHg, and 30% (22/73) had total cholesterol > 200 mg/dL. KIIs identified community stigma and misinformation as major barriers to HIV testing among African-born individuals. Conclusions: Residential health fairs are a feasible method to increase HIV testing among African-born individuals in Seattle. The high prevalence of NCDs highlights the importance of integrating general preventive services within HIV testing programs in this population. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
41. Taxonomic and conservation implications of population genetic admixture, mito-nuclear discordance, and male-biased dispersal of a large endangered snake, Drymarchon couperi.
- Author
-
Folt, Brian, Bauder, Javan, Spear, Stephen, Stevenson, Dirk, Hoffman, Michelle, Oaks, Jamie R., Jr.Wood, Perry L., Jenkins, Christopher, Steen, David A., and Guyer, Craig
- Subjects
MICROSATELLITE repeats ,DISPERSAL (Ecology) ,NUCLEAR DNA ,MITOCHONDRIAL DNA ,ENDANGERED species ,GENE flow ,WILDLIFE conservation - Abstract
Accurate species delimitation and description are necessary to guide effective conservation of imperiled species, and this synergy is maximized when multiple data sources are used to delimit species. We illustrate this point by examining Drymarchon couperi (Eastern Indigo Snake), a large, federally-protected species in North America that was recently divided into two species based on gene sequence data from three loci and heuristic morphological assessment. Here, we re-evaluate the two-species hypothesis for D. couperi by evaluating both population genetic and gene sequence data. Our analyses of 14 microsatellite markers revealed 6–8 genetic population clusters with significant admixture, particularly across the contact zone between the two hypothesized species. Phylogenetic analyses of gene sequence data with maximum-likelihood methods suggested discordance between mitochondrial and nuclear markers and provided phylogenetic support for one species rather than two. For these reasons, we place Drymarchon kolpobasileus into synonymy with D. couperi. We suggest inconsistent patterns between mitochondrial and nuclear DNA are driven by high dispersal of males relative to females. We advocate for species delimitation exercises that evaluate admixture and gene flow in addition to phylogenetic analyses, particularly when the latter reveal monophyletic lineages. This is particularly important for taxa, such as squamates, that exhibit strong sex-biased dispersal. Problems associated with over-delimitation of species richness can become particularly acute for threatened and endangered species, because of high costs to conservation when taxonomy demands protection of more individual species than are supported by accumulating data. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
42. Molecular analyses and phylogeny of the herpes simplex virus 2 US9 and glycoproteins gE/gI obtained from infected subjects during the Herpevac Trial for Women.
- Author
-
Rowe, Kelsey L., Minaya, Miguel A., Belshe, Robert B., and Morrison, Lynda A.
- Subjects
HERPES simplex virus ,MOLECULAR phylogeny - Abstract
Herpes simplex virus 2 (HSV-2) is a large double-stranded DNA virus that causes genital sores when spread by sexual contact and is a principal cause of viral encephalitis in newborns and infants. Viral glycoproteins enable virion entry into and spread between cells, making glycoproteins a prime target for vaccine development. A truncated glycoprotein D2 (gD2) vaccine candidate, recently tested in the phase 3 Herpevac Trial for Women, did not prevent HSV-2 infection in initially seronegative women. Some women who became infected experienced multiple recurrences during the trial. The HSV U
S 7, US 8, and US 9 genes encode glycoprotein I (gI), glycoprotein E (gE), and the US9 type II membrane protein, respectively. These proteins participate in viral spread across cell junctions and facilitate anterograde transport of virion components in neurons, prompting us to investigate whether sequence variants in these genes could be associated with frequent recurrence. The nucleotide sequences and dN/dS ratios of the US 7-US 9 region from viral isolates of individuals who experienced multiple recurrences were compared with those who had had a single episode of disease. No consistent polymorphism(s) distinguished the recurrent isolates. In frequently recurring isolates, the dN/dS ratio of US 7 was low while greater variation (higher dN/dS ratio) occurred in US 8, suggesting conserved function of the former during reactivation. Phylogenetic reconstruction of the US 7-US 9 region revealed eight strongly supported clusters within the 55 U.S. HSV-2 strains sampled, which were preserved in a second global phylogeny. Thus, although we have demonstrated evolutionary diversity in the US 7-US 9 complex, we found no molecular evidence of sequence variation in US 7-US 9 that distinguishes isolates from subjects with frequently recurrent episodes of disease. [ABSTRACT FROM AUTHOR]- Published
- 2019
- Full Text
- View/download PDF
43. Nonalcoholic fatty liver disease with elevated alanine aminotransferase levels is negatively associated with bone mineral density: Cross-sectional study in U.S. adults.
- Author
-
Umehara, Toshihiro
- Subjects
FATTY liver ,NON-alcoholic beverages ,BONE density ,HEALTH surveys ,ALCOHOL drinking - Abstract
Background: Nonalcoholic fatty liver disease (NAFLD) has been reported to have a negative effect on bone mineral density (BMD) in Asian populations. Whether such an association exists in Western populations is less clear. Methods: This cross-sectional analysis of data from NHANES III, a United States national health survey conducted from 1988 to 1994, included 6089 participants aged 40–75 years, selected after excluding people with hepatitis virus serology, elevated alcohol consumption, decreased renal function, or steroid use, and pregnant females. The main outcome, BMD at the femoral neck, was measured using dual-energy X-ray absorptiometry. The primary exposure, NAFLD, was defined as moderate or severe hepatic steatosis diagnosed using abdominal ultrasonography. Result: After controlling for gender and menopausal status, race/ethnicity, age and body mass index, NAFLD was not significantly associated with BMD (beta coefficient: −0.006, 95%CI: −0.016, 0.003). A secondary analysis categorized participants with NAFLD according to their serum alanine aminotransferase (ALT) levels into high and normal ALT NAFLD groups, and compared these with the non-NAFLD group. NAFLD with higher levels of ALT was associated with lower levels of BMD (beta coefficient: −0.023, 95% CI: −0.044, −0.002). Conclusion: This study showed a relationship between NAFLD with high ALT and lower BMD in the general U.S. population. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
44. Mortality risk of chronic kidney disease: A comparison between the adult populations in urban China and the United States.
- Author
-
Wang, Jinwei, Wang, Fang, Saran, Rajiv, He, Zhi, Zhao, Ming-Hui, Li, Yi, Zhang, Luxia, and Bragg-Gresham, Jennifer
- Subjects
KIDNEY diseases ,PUBLIC health ,MORTALITY ,ALBUMINURIA - Abstract
Background: Chronic kidney disease (CKD) is a risk factor for all-cause mortality in the United States, but the evidence from China is limited. We investigate whether prognosis of CKD (mortality) differs between the two countries. In particular, we sought to compare the strength of association between CKD stage and all-cause mortality, by country. Methods: Mortality-linked data from China National Survey of Chronic Kidney Disease (urban population, n = 25,269) and US NHANES (2005–2010, n = 15,209) for adults >20 years old were analyzed. The Chinese cohort was followed until Dec 31, 2013, while the NHANES cohort until Dec 31, 2011. CKD was defined by eGFR <60ml/min/1.73m
2 or albuminuria (defined as ACR ≥30mg/g). Weighted Cox models were used to evaluate the association between the two CKD indicators and mortality. Both stratified and combined models (with country interactions) were explored. Results: The Chinese sample had a lower proportion of eGFR<60 ml/min/1.73m2 (3.7% vs. 6.9%) and albuminuria (7.6% vs. 9.0%), compared to the US. Higher rates of mortality were observed with higher stages of CKD in both countries. HRs for mortality in the more advanced CKD categories reached 2.18 (1.14–4.15) in China and 1.66 (1.18–2.32) in the US in the absence of albuminuria, and 2.30 (1.13–4.68) and 3.04 (2.33–3.96) in the presence of albuminuria. No significant interactions were detected between country and these categories. Conclusion: The association between albuminuria and reduced eGFR and all-cause mortality was similar in both countries, with albuminuria being associated with the larger effect size compared to lower eGFR. [ABSTRACT FROM AUTHOR]- Published
- 2018
- Full Text
- View/download PDF
45. Inverse association of marijuana use with nonalcoholic fatty liver disease among adults in the United States.
- Author
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Kim, Donghee, Kim, Won, Kwak, Min-Sun, Chung, Goh Eun, Yim, Jeong Yoon, and Ahmed, Aijaz
- Subjects
MEDICAL marijuana ,LIVER disease treatment ,LIVER diseases ,MEDICAL care ,ULTRASONIC imaging ,PATIENTS - Abstract
Background & aims: The impact of marijuana on nonalcoholic fatty liver disease (NAFLD) is largely unknown. We studied the association between marijuana and NAFLD utilizing cross-sectional data from the National Health and Nutrition Examination Survey (NHANES) from 2005–2014 and NHANES III (1988–1994). Methods: Suspected NAFLD was diagnosed if serum alanine aminotransferase (ALT) was > 30 IU/L for men and > 19 IU/L for women in the absence of other liver diseases (NHANES 2005–2014). In NHANES III cohort, NAFLD was defined based on ultrasonography. Results: Of the 14,080 (NHANES 2005–2014) and 8,286 (NHANES III) participants, prevalence of suspected NAFLD and ultrasonographically-diagnosed NAFLD were inversely associated with marijuana use (p < 0.001). Compared to marijuana-naïve participants, marijuana users were less likely to have suspected NAFLD (odds ratio [OR]: 0.90, 95% confidence interval [CI]: 0.82–0.99 for past user; OR: 0.68, 95% CI: 0.58–0.80 for current user) and ultrasonographically-diagnosed NAFLD (OR: 0.75, 95% CI: 0.57–0.98 for current user) in the age, gender, ethnicity-adjusted model. On multivariate analysis, the ORs for suspected NAFLD comparing current light or heavy users to non-users were 0.76 (95% CI 0.58–0.98) and 0.70 (95% CI 0.56–0.89), respectively (P for trend = 0.001) with similar trends in ultrasonographically-diagnosed NAFLD (OR: 0.77, 95% CI: 0.59–1.00 for current user; OR: 0.71, 95% CI: 0.51–0.97 for current light user). In insulin resistance-adjusted model, marijuana use remained an independent predictor of lower risk of suspected NAFLD. Conclusions: In this nationally representative sample, active marijuana use provided a protective effect against NAFLD independent of known metabolic risk factors. The pathophysiology is unclear and warrants further investigation. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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46. Prehistoric mitochondrial DNA of domesticate animals supports a 13th century exodus from the northern US southwest.
- Author
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Kemp, Brian M., Judd, Kathleen, Monroe, Cara, Eerkens, Jelmer W., Hilldorfer, Lindsay, Cordray, Connor, Schad, Rebecca, Reams, Erin, Ortman, Scott G., and Kohler, Timothy A.
- Subjects
MITOCHONDRIAL DNA ,DOMESTICATION of animals ,CLIMATE change ,CULTURAL pluralism ,SOCIAL movements - Abstract
The 13
th century Puebloan depopulation of the Four Corners region of the US Southwest is an iconic episode in world prehistory. Studies of its causes, as well as its consequences, have a bearing not only on archaeological method and theory, but also social responses to climate change, the sociology of social movements, and contemporary patterns of cultural diversity. Previous research has debated the demographic scale, destinations, and impacts of Four Corners migrants. Much of this uncertainty stems from the substantial differences in material culture between the Four Corners vs. hypothesized destination areas. Comparable biological evidence has been difficult to obtain due to the complete departure of farmers from the Four Corners in the 13th century CE and restrictions on sampling human remains. As an alternative, patterns of genetic variation among domesticated species were used to address the role of migration in this collapse. We collected mitochondrial haplotypic data from dog (Canis lupus familiaris) and turkey (Meleagris gallopavo) remains from archaeological sites in the most densely-populated portion of the Four Corners region, and the most commonly proposed destination area for that population under migration scenarios. Results are consistent with a large-scale migration of humans, accompanied by their domestic turkeys, during the 13th century CE. These results support scenarios that suggest contemporary Pueblo peoples of the Northern Rio Grande are biological and cultural descendants of Four Corners populations. [ABSTRACT FROM AUTHOR]- Published
- 2017
- Full Text
- View/download PDF
47. Comparative molecular analyses of invasive fall armyworm in Togo reveal strong similarities to populations from the eastern United States and the Greater Antilles.
- Author
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Nagoshi, Rodney N., Koffi, Djima, Agboka, Komi, Tounou, Kodjo Agbeko, Banerjee, Rahul, Jurat-Fuentes, Juan Luis, and Meagher, Robert L.
- Subjects
FALL armyworm ,INSECT morphology ,COMPARATIVE studies ,CLASSIFICATION of insects - Abstract
The fall armyworm (Spodoptera frugiperda, J.E. Smith) is a noctuid moth that is a major and ubiquitous agricultural pest in the Western Hemisphere. Infestations have recently been identified in several locations in Africa, indicating its establishment in the Eastern Hemisphere where it poses an immediate and significant economic threat. Genetic methods were used to characterize noctuid specimens infesting multiple cornfields in the African nation of Togo that were tentatively identified as fall armyworm by morphological criteria. Species identification was confirmed by DNA barcoding and the specimens were found to be primarily of the subgroup that preferentially infests corn and sorghum in the Western Hemisphere. The mitochondrial haplotype configuration was most similar to that found in the Caribbean region and the eastern coast of the United States, identifying these populations as the likely originating source of the Togo infestations. A genetic marker linked with resistance to the Cry1Fa toxin from Bacillus thuringiensis (Bt) expressed in transgenic corn and common in Puerto Rico fall armyworm populations was not found in the Togo collections. These observations demonstrate the usefulness of genetic surveys to characterize fall armyworm populations from Africa. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
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48. Meetings calendar.
- Subjects
BIOCHEMISTRY - Abstract
A calendar of events on biochemistry sector is presented which includes 2nd annual meeting of Society for the Advancement of Biology Education Research in Minneapolis and Biennial Conference on Chemical Education in Pennsylvania and Protein Society 25th Annual symposium in San Diego all in July-August 2012.
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- 2012
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49. Energy Sprawl Is the Largest Driver of Land Use Change in United States.
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Trainor, Anne M., McDonald, Robert I., and Fargione, Joseph
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ENERGY industries ,LAND use ,GEOTHERMAL resources ,FOSSIL fuels ,ENERGY development ,LANDSCAPE changes - Abstract
Energy production in the United States for domestic use and export is predicted to rise 27% by 2040. We quantify projected energy sprawl (new land required for energy production) in the United States through 2040. Over 200,000 km
2 of additional land area will be directly impacted by energy development. When spacing requirements are included, over 800,000 km2 of additional land area will be affected by energy development, an area greater than the size of Texas. This pace of development in the United States is more than double the historic rate of urban and residential development, which has been the greatest driver of conversion in the United States since 1970, and is higher than projections for future land use change from residential development or agriculture. New technology now places 1.3 million km2 that had not previously experienced oil and gas development at risk of development for unconventional oil and gas. Renewable energy production can be sustained indefinitely on the same land base, while extractive energy must continually drill and mine new areas to sustain production. We calculated the number of years required for fossil energy production to expand to cover the same area as renewables, if both were to produce the same amount of energy each year. The land required for coal production would grow to equal or exceed that of wind, solar and geothermal energy within 2–31 years. In contrast, it would take hundreds of years for oil production to have the same energy sprawl as biofuels. Meeting energy demands while conserving nature will require increased energy conservation, in addition to distributed renewable energy and appropriate siting and mitigation. [ABSTRACT FROM AUTHOR]- Published
- 2016
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50. Cardiovascular Risk Factors of Adults Age 20–49 Years in the United States, 1971–2012: A Series of Cross-Sectional Studies.
- Author
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Casagrande, Sarah S., Menke, Andy, and Cowie, Catherine C.
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CARDIOVASCULAR diseases risk factors ,PUBLIC health ,DISEASES in adults ,MEDICAL economics ,GENERATION gap ,HEALTH & Nutrition Examination Survey - Abstract
Background: The health of younger adults in the U.S. has important public health and economic-related implications. However, previous literature is insufficient to fully understand how the health of this group has changed over time. This study examined generational differences in cardiovascular risk factors of younger adults over the past 40 years. Methods: Data were from 6 nationally representative cross-sectional National Health and Nutrition Examination Surveys (1971–2012; N = 44,670). Participants were adults age 20–49 years who self-reported sociodemographic characteristics and health conditions, and had examination/laboratory measures for hypertension, hyperlipidemia, diabetes, obesity, and chronic kidney disease. Prevalences of sociodemographic characteristics and health status were determined by study period. Logistic regression was used to determine the odds [odds ratio (OR), 95% confidence interval] of health conditions by study period: models adjusted only for age, sex, and race, and fully adjusted models additionally adjusted for socioeconomic characteristics, smoking, BMI, diabetes, and/or hypertension (depending on the outcome) were assessed. Results: Participants in 2009–2012 were significantly more likely to be obese and have diabetes compared to those in 1971–1975 (OR = 4.98, 3.57–6.97; OR = 3.49, 1.59–7.65, respectively, fully adjusted). Participants in 2009–2012 vs. 1988–1994 were significantly more likely to have had hypertension but uncontrolled hypertension was significantly less likely (OR = 0.67, 0.52–0.86, fully adjusted). There was no difference over time for high cholesterol, but uncontrolled high cholesterol was significantly less likely in 2009–2012 vs. 1988–1994 (OR = 0.80, 0.68–0.94, fully adjusted). The use of hypertensive and cholesterol medications increased while chronic kidney and cardiovascular diseases were relatively stable. Conclusions: Cardiovascular risk factors of younger U.S. adults have worsened over the past 40 years, but treatment for hypertension and high cholesterol has improved. The sub-optimal and worsening health in younger adults may have a substantial impact on health care utilization and costs, and should be considered when developing health care practices. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
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