Developed barrier systems (barrier islands and spits) are lowering and narrowing with sea‐level rise (SLR) such that habitation will eventually become infeasible or prohibitively expensive for most communities in its current form. Before reaching this state, choices will be made to modify the natural and built environment to reduce relatively short‐term risk. These choices will likely vary substantially even along the same developed barrier system as these landscapes are rarely uniformly managed alongshore. Building on the results from a companion paper, here we use a new modeling framework to investigate the complexities in barrier system dynamics that emerge as a function of alongshore variability in management strategies, accelerations in SLR, and changes in storm intensity and frequency. Model results suggest that when connected through alongshore sediment transport, barriers with alongshore variable management strategies—here, the construction of dunes and wide beaches to protect either roadways or communities—evolve differently than they would in the absence of alongshore connections. Shoreline stabilization by communities in one location influences neighboring areas managed solely for roadways, inducing long‐term system‐wide lags in shoreline retreat. Conversely, when barrier segments managed for roadways are allowed to overwash, this induces shoreline curvature system‐wide, thus enhancing erosion on nearby stabilized segments. Feedbacks between dunes, storms, overwash flux, and alongshore sediment transport also affect outcomes of climate adaptation measures. In the case of partial, early abandonment of roadway management, we find that system‐wide transitions to less vulnerable landscape states are possible, even under accelerated SLR and increased storminess. Plain Language Summary: Because humans inhabit barrier islands and spits (collectively referred to as "barriers") these landscapes, that would otherwise naturally change shape in response to storms and sea‐level rise (SLR), are influenced by efforts to protect development with wide beaches and tall dunes. These features interfere with a process called overwash, which transports sand landward during storms, building barrier elevation relative to sea level. Here, we use a new model to better understand how these interactions influence the habitability of barriers over time. Our simulations show that different management decisions made for adjacent coastal segments affect each other in positive and negative ways. When communities nourish beaches, adjacent to segments managed for roadways, some nourished sand reaches the adjacent segments, reducing shoreline erosion there. Conversely, portions of barriers that are managed only for roadways allow some overwash to reach the barrier interior; this negatively affects neighboring communities by enhancing their shoreline erosion rates. We find that early abandonment of dune management along portions of barriers may prevent highly vulnerable future states, such as barrier drowning. As communities explore choices for climate adaptation, our findings reveal the importance of coordination among decision makers in adjacent communities to avoid undesirable outcomes. Key Points: When management strategies vary alongshore, their effects are coupled via alongshore sediment redistribution, influencing barrier evolutionBeach nourishment (along portions of barriers) induces system‐wide lags in shoreline retreat, even decades after nourishment practices ceaseMore overwash (due to lower dunes or increased storminess) can prolong habitability, but drives increased nourishment frequency elsewhere [ABSTRACT FROM AUTHOR]