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The objective of this work was to investigate the influence of hydrogen bonds between fibres on static and dynamic strength properties of paper. A commercial bleached pinewood kraft pulp was soaked in water, refined in a PFI, and used to form paper webs in different solvents, such as water, methanol, ethanol, n-propanol and n-butanol, to determine the effect of their dipole moment on static and dynamic strength properties of resulting paper sheets. Paper which was formed in water, being the solvent of the highest dipole moment among the tested ones, showed the highest breaking length and tear resistance. When paper webs were formed in n-butanol, which was the least polar among the solvents, these parameters were reduced by around 75%. These results provide evidence of the importance of water in paper web formation and strong impact of hydrogen bonds between fibres on strength properties of paper. [ABSTRACT FROM AUTHOR]

Microbial fuel cells (MFCs) can evolve in a viable technology if environmentally sound materials are developed and became available at low cost for these devices. This is especially important not only for the designing of large wastewater treatment systems, but also for the fabrication of low-cost, single-use devices. In this work we synthesized membranes by a simple procedure involving easily-biodegradable and economic materials such as poly (vinyl alcohol) (PVA), chitosan (CS) and the composite PVA:CS. Membranes were chemical and physically characterized and compared to Nafion®. Performance was studied using the membrane as separator in a typical H-Type MFCs showing that PVA:CS membrane outperform Nafion® 4 times (power production) while being 75 times more economic. We found that performance in MFC depends over interactions among several membrane characteristics such as oxygen permeability and ion conductivity. Moreover, we design a paper-based micro-scale MFC, which was used as a toxicity assay using 16 μL samples containing formaldehyde as a model toxicant. The PVA:CS membrane presented here can offer low environmental impact and become a very interesting option for point of need single-use analytical devices, especially in low-income countries where burning is used as disposal method, and toxic fluoride fumes (from Nafion®) can be released to the environment. [ABSTRACT FROM AUTHOR]

The ambiguous behavior of metal–graphene interface has been addressed in this paper using density functional theory and nonequilibrium Green’s function formalism. For the first time, the fundamental chemistry of metal–graphene interface, in particular role of sp-hybridized and sp2-hybridized carbon atoms, has been emphasized and discussed in detail in this paper. It was discovered that the sp-hybridized sites at the edge of a graphene monolayer contribute to 40% of current conduction when compared with sp2-hybridized atom sites in the graphene–metal overlap region. Moreover, we highlighted the insignificance of an additional metal layer, i.e., sandwiched contact, due to lacking sp-hybridized carbon sites. A fundamental way of defining the contact resistance, while keeping chemical bonding in mind, has been proposed. The bonding insight has been further used to propose the novel ways of interfacing metal with graphene, which results in a 40% reduction in contact resistance. [ABSTRACT FROM PUBLISHER]

For a period of several years the philosopher of science Hasok Chang has promoted various inter-related views including pluralism, pragmatism, and an associated view of natural kinds. He has also argued for what he calls the persistence of everyday terms in the scientific view. Chang claims that terms like phlogiston were never truly abandoned but became transformed into different concepts that remain useful. On the other hand, Chang argues that some scientific terms such as acidity have suffered a form of "rupture", especially in the case of the modern Lewis definition of acids. Chang also complains that the degree of acidity of a Lewis acid cannot be measured using a pH meter and seems to regard this as a serious problem. The present paper examines some of these views, especially what Chang claims to be a rupture in the definition of acidity. It is suggested that there has been no such rupture but a genuine generalization, on moving from the Brønsted-Lowry theory to the Lewis theory of acidity. It will be shown how the quantification and measurement of Lewis acidity can easily be realized through the use of equilibrium theory and the use of stability constants. [ABSTRACT FROM AUTHOR]

Carrageenans are commercially important sulfated gums found in various species of red seaweeds (Rhodophyta), wherein they serve a structural function similar to that of pectins in land plants. In this study, carrageenan was used independently or in combination with cationic polyacrylamide (CPAM) and/or Al2(SO4)3 to explore its application as a dry strength additive in papermaking. Strength index determination, ash content detection, FTIR characterization and SEM observation were performed on prepared handsheets. The results showed that with 0.6% Al2(SO4)3 and 0.2% carrageenan as additives, the tensile index increased by 13.53% and precipitated calcium carbonate (PCC) retention increased by 57.06%. With 0.6% Al2(SO4)3, 0.2% carrageenan and 0.03% CPAM as additives, PCC retention increased by 121% while the tensile index did not fall compared to handsheets without additives, indicating that carrageenan could enhance the strength of handsheets and be used as an anionic dry strength agent. [ABSTRACT FROM AUTHOR]

This research paper reports a study on thermal and sound insulation samples developed from recycled cotton/polyester (recycled cotton/PET) for construction industry applications. The waste recycled cotton and polyester fiber is a potential source of raw material that can be considered for thermal and sound insulation applications, but its quantities are limited. While the quantities are limited, waste recycled cotton fiber was mixed with recycled/PET fiber in 50/50 proportions in the form of two-layer nonwoven mats with a chemical bonding method. The samples such as cotton (color and white), polyester (color and white), and cotton-polyester blend (color and white) were prepared. All the samples were tested for thermal insulation, sound absorption, moisture absorption, and fiber properties as per the ASTM standard. Also, behaviors of six recycled cotton/polyester nonwoven samples under high humidity conditions were evaluated. The sound absorption coefficients were measured according to ASTM E 1050 by an impedance tube method, the sound absorption coefficient over six frequencies 125, 250, 500, 1000, 2000, and 4000 Hz were calculated. The result revealed that nonwoven mats that are prepared from recycled/PET/cotton waste have confirmed more than 70% of the sound absorption coefficient and the recycled nonwoven mats provided the best insulation, sound absorption, moisture absorption, and fiber properties. The recycled waste cotton/ polyester nonwoven mats have adequate moisture resistance at high humidity conditions without affecting the insulation and sound-absorbing properties. [ABSTRACT FROM AUTHOR]

This research paper reports a study on thermal and sound insulation samples developed from recycled cotton/polyester (recycled cotton/PET) for construction industry applications. The waste recycled cotton and polyester fiber is a potential source of raw material that can be considered for thermal and sound insulation applications, but its quantities are limited. While the quantities are limited, waste recycled cotton fiber was mixed with recycled/PET fiber in 50/50 proportions in the form of two-layer nonwoven mats with a chemical bonding method. The samples such as cotton (color and white), polyester (color and white), and cotton-polyester blend (color and white) were prepared. All the samples were tested for thermal insulation, sound absorption, moisture absorption, and fiber properties as per the ASTM standard. Also, behaviors of six recycled cotton/polyester nonwoven samples under high humidity conditions were evaluated. The sound absorption coefficients were measured according to ASTM E 1050 by an impedance tube method, the sound absorption coefficient over six frequencies 125, 250, 500, 1000, 2000, and 4000 Hz were calculated. The result revealed that nonwoven mats that are prepared from recycled/PET/cotton waste have confirmed more than 70% of the sound absorption coefficient and the recycled nonwoven mats provided the best insulation, sound absorption, moisture absorption, and fiber properties. The recycled waste cotton/polyester nonwoven mats have adequate moisture resistance at high humidity conditions without affecting the insulation and sound-absorbing properties. [ABSTRACT FROM AUTHOR]

Recombinant expression of proteins has become an indispensable tool in modern day research. The large yields of recombinantly expressed proteins accelerate the structural and functional characterization of proteins. Nevertheless, there are literature reported that the recombinant proteins show some differences in structure and function as compared with the native ones. Now there have been more than 100,000 structures (from both recombinant and native sources) publicly available in the Protein Data Bank (PDB) archive, which makes it possible to investigate if there exist any proteins in the RCSB PDB archive that have identical sequence but have some difference in structures. In this paper, we present the results of a systematic comparative study of the 3D structures of identical naturally purified versus recombinantly expressed proteins. The structural data and sequence information of the proteins were mined from the RCSB PDB archive. The combinatorial extension (CE), FATCAT-flexible and TM-Align methods were employed to align the protein structures. The root-mean-square distance (RMSD), TM-score, P-value, Z-score, secondary structural elements and hydrogen bonds were used to assess the structure similarity. A thorough analysis of the PDB archive generated five-hundred-seventeen pairs of native and recombinant proteins that have identical sequence. There were no pairs of proteins that had the same sequence and significantly different structural fold, which support the hypothesis that expression in a heterologous host usually could fold correctly into their native forms. [ABSTRACT FROM AUTHOR]

Sigma factors are key proteins that mediate the recruitment of RNA polymerase to the promoter regions of genes, for the initiation of bacterial transcription. Multiple sigma factors in a bacterium selectively recognize their cognate promoter sequences, thereby inducing the expression of their own regulons. In this paper, we report the crystal structure of the σ4 domain of Bacillus subtilis SigW bound to the -35 promoter element. Purine-specific hydrogen bonds of the -35 promoter element with the recognition helix α9 of the σ4 domain occurs at three nucleotides of the consensus sequence (G-35, A-34, and G’-31 in G-35A-34A-33A-32C-31C-30T-29). The hydrogen bonds of the backbone with the α7 and α8 of the σ4 domain occurs at G’-30. These results elucidate the structural basis of the selective recognition of the promoter by SigW. In addition, comparison of SigW structures complexed with the -35 promoter element or with anti-sigma RsiW reveals that DNA recognition and anti-sigma factor binding of SigW are mutually exclusive. [ABSTRACT FROM AUTHOR]

Our understanding of how chromosomes structurally organize and dynamically interact has been revolutionized through the lens of long-chain polymer physics. Major protein contributors to chromosome structure and dynamics are condensin and cohesin that stochastically generate loops within and between chains, and entrap proximal strands of sister chromatids. In this paper, we explore the ability of transient, protein-mediated, gene-gene crosslinks to induce clusters of genes, thereby dynamic architecture, within the highly repeated ribosomal DNA that comprises the nucleolus of budding yeast. We implement three approaches: live cell microscopy; computational modeling of the full genome during G1 in budding yeast, exploring four decades of timescales for transient crosslinks between 5kbp domains (genes) in the nucleolus on Chromosome XII; and, temporal network models with automated community (cluster) detection algorithms applied to the full range of 4D modeling datasets. The data analysis tools detect and track gene clusters, their size, number, persistence time, and their plasticity (deformation). Of biological significance, our analysis reveals an optimal mean crosslink lifetime that promotes pairwise and cluster gene interactions through “flexible” clustering. In this state, large gene clusters self-assemble yet frequently interact (merge and separate), marked by gene exchanges between clusters, which in turn maximizes global gene interactions in the nucleolus. This regime stands between two limiting cases each with far less global gene interactions: with shorter crosslink lifetimes, “rigid” clustering emerges with clusters that interact infrequently; with longer crosslink lifetimes, there is a dissolution of clusters. These observations are compared with imaging experiments on a normal yeast strain and two condensin-modified mutant cell strains. We apply the same image analysis pipeline to the experimental and simulated datasets, providing support for the modeling predictions. [ABSTRACT FROM AUTHOR]

Bacteria contain several nucleoid-associated proteins that organize their genomic DNA into the nucleoid by bending, wrapping or bridging DNA. The Histone-like Nucleoid Structuring protein H-NS found in many Gram-negative bacteria is a DNA bridging protein and can structure DNA by binding to two separate DNA duplexes or to adjacent sites on the same duplex, depending on external conditions. Several nucleotide sequences have been identified to which H-NS binds with high affinity, indicating H-NS prefers AT-rich DNA. To date, highly detailed structural information of the H-NS DNA complex remains elusive. Molecular simulation can complement experiments by modelling structures and their time evolution in atomistic detail. In this paper we report an exploration of the different binding modes of H-NS to a high affinity nucleotide sequence and an estimate of the associated rate constant. By means of molecular dynamics simulations, we identified three types of binding for H-NS to AT-rich DNA. To further sample the transitions between these binding modes, we performed Replica Exchange Transition Interface Sampling, providing predictions of the mechanism and rate constant of H-NS binding to DNA. H-NS interacts with the DNA through a conserved QGR motif, aided by a conserved arginine at position 93. The QGR motif interacts first with phosphate groups, followed by the formation of hydrogen bonds between acceptors in the DNA minor groove and the sidechains of either Q112 or R114. After R114 inserts into the minor groove, the rest of the QGR motif follows. Full insertion of the QGR motif in the minor groove is stable over several tens of nanoseconds, and involves hydrogen bonds between the bases and both backbone and sidechains of the QGR motif. The rate constant for the process of H-NS binding to AT-rich DNA resulting in full insertion of the QGR motif is in the order of 106 M−1s−1, which is rate limiting compared to the non-specific association of H-NS to the DNA backbone at a rate of 108 M−1s−1. [ABSTRACT FROM AUTHOR]

During clathrin-mediated endocytosis in yeast cells, short actin filaments (< 200nm) and crosslinking protein fimbrin assemble to drive the internalization of the plasma membrane. However, the organization of the actin meshwork during endocytosis remains largely unknown. In addition, only a small fraction of the force necessary to elongate and pinch off vesicles can be accounted for by actin polymerization alone. In this paper, we used mathematical modeling to study the self-organization of rigid actin filaments in the presence of elastic crosslinkers in conditions relevant to endocytosis. We found that actin filaments condense into either a disordered meshwork or an ordered bundle depending on filament length and the mechanical and kinetic properties of the crosslinkers. Our simulations also demonstrated that these nanometer-scale actin structures can store a large amount of elastic energy within the crosslinkers (up to 10kBT per crosslinker). This conversion of binding energy into elastic energy is the consequence of geometric constraints created by the helical pitch of the actin filaments, which results in frustrated configurations of crosslinkers attached to filaments. We propose that this stored elastic energy can be used at a later time in the endocytic process. As a proof of principle, we presented a simple mechanism for sustained torque production by ordered detachment of crosslinkers from a pair of parallel filaments. [ABSTRACT FROM AUTHOR]

It is generally recognized that insect odorant binding proteins (OBPs) mediate the solubilisation and transport of hydrophobic odorant molecules and contribute to the sensitivity of the insect olfactory system. However, the exact mechanism by which OBPs deliver odorants to olfactory receptors and their role, if any, as selectivity filters for specific odorants, are still a matter of debate. In the case of Anopheles gambiae, recent studies indicate that ligand discrimination is effected through the formation of heterodimers such as AgamOBP1 and AgamOBP4 (odorant binding proteins 1 and 4 from Anopheles gambiae). Furthermore, AgamOBPs have been reported to be promiscuous in binding more than one ligand simultaneously and repellents such as DEET (N,N-diethyl-3-toluamide) and 6-MH (6-methyl-5-hepten-2-one) interact directly with mosquito OBPs and/or compete for the binding of attractive odorants thus disrupting OBP heterodimerisation. In this paper, we propose mechanisms of action of DEET and 6-MH. We also predict that ligand binding can occur in several locations of AgamOBP1 with partial occupancies and propose structural features appropriate for repellent pharmacophores. [ABSTRACT FROM AUTHOR]

The crucial role of water in the engine of life have encouraged many researchers in studying, both theoretically and experimentally, the possible “structure” of water. Many properties of water have been related to the interplay between two distinct and interconverting structural species, namely the low-density water (LDW) and the high-density water (HDW). Supported by the results obtained with other aqueous solutions, this paper deals with the possibility of using the ultra-weak delayed luminescence (DL) to investigate water structuring in a mixture with glycerol, characterized only by hydrogen bonds between the various molecules. Spectral and temporal characteristics of DL decays give information on the two components of the mixture, by evidencing the contribution of water at glycerol concentrations close to the values used in cryopreservation. DL results have shown a correlation with LDW clusters size as determined by other researchers on the basis of neutron diffraction experiments and computational modelling, as reported in Literature. [ABSTRACT FROM AUTHOR]

With the rapid development of semiconductors, the number of materials needed to be polished sharply increases. The material properties vary significantly, posing challenges to chemical mechanical polishing (CMP). Accordingly, the study aimed to classify the material removal mechanism. Based on the CMP and atomic force microscopy results, the six representative metals can be preliminarily classified into two groups, presumably due to different material removal modes. From the tribology perspective, the first group of Cu, Co, and Ni may mainly rely on the mechanical plowing effect. After adding H2O2, corrosion can be first enhanced and then suppressed, affecting the surface mechanical strength. Consequently, the material removal rate (MRR) and the surface roughness increase and decrease. By comparison, the second group of Ta, Ru, and Ti may primarily depend on the chemical bonding effect. Adding H2O2 can promote oxidation, increasing interfacial chemical bonds. Therefore, the MRR increases, and the surface roughness decreases and levels off. In addition, CMP can be regulated by tuning the synergistic effect of oxidation, complexation, and dissolution for mechanical plowing, while tuning the synergistic effect of oxidation and ionic strength for chemical bonding. The findings provide mechanistic insight into the material removal mechanism in CMP. [ABSTRACT FROM AUTHOR]

In a reaction, determination of an optimal path with a high reaction rate (or a low free energy barrier) is important for the study of the reaction mechanism. This is a complicated problem that involves lots of degrees of freedom. For simple models, one can build an initial path in the collective variable space by the interpolation method first and then update the whole path constantly in the optimization. However, such interpolation method could be risky in the high dimensional space for large molecules. On the path, steric clashes between neighboring atoms could cause extremely high energy barriers and thus fail the optimization. Moreover, performing simulations for all the snapshots on the path is also time-consuming. In this paper, we build and optimize the path by a growing method on the free energy surface. The method grows a path from the reactant and extends its length in the collective variable space step by step. The growing direction is determined by both the free energy gradient at the end of the path and the direction vector pointing at the product. With fewer snapshots on the path, this strategy can let the path avoid the high energy states in the growing process and save the precious simulation time at each iteration step. Applications show that the presented method is efficient enough to produce optimal paths on either the two-dimensional or the twelve-dimensional free energy surfaces of different small molecules. [ABSTRACT FROM AUTHOR]

This Special Issue aims at gaining a deeper understanding on the relationship between the underlying structural order and the resulting physical properties in aperiodic systems, including quasicrystalline and related complex metallic alloys, photonic quasicrystals, and other structures exhibiting long-range aperiodic order. This Special Issue contains 12 papers which highlight recent developments in quasiperiodic crystal structure, photonic quasicrystals and related optical devices, the intrinsic electrical, thermal, and mechanical properties of icosahedral and decagonal metallic alloys, and the nature of chemical bonding in intermetallic compounds, from a multidisciplinary perspective. In light of the results presented in the contributions collected in this Special Issue, we can confidently expect that new insights into the interdisciplinary science of quasicrystals will be gained in the years to come, providing a sharper picture of their structures and related physical properties, and spurring further progress in practical issues related to both materials engineering science and nanotechnology. [ABSTRACT FROM AUTHOR]

Transition metal carbides are interesting materials with a singular combination of properties, such as high melting points, high hardness, good transport properties and relatively low costs, which makes them excellent candidates for several technological applications. The possible applications of NbC carbide remained unexplored as it was in the past expensive and available in limited volumes. In order to guide investigations of the applicability of NbC, a deeper understanding of the physical properties of this carbide is fundamental. In this review paper, key physical properties of NbC are compiled with emphasis on its chemical bonding, a careful description of the C-Nb phase diagram, the phases formed and the crystal structures. Thermal properties are discussed and correlated with the intrinsic and extrinsic features of NbC. Finally, elastic properties are discussed. [ABSTRACT FROM AUTHOR]

We performed quantum chemical calculations on the geometries, electronic structures, bonding properties, and stability strategy of endohedral metallofullerenes TM@C28 (TM = Sc−, Y−, La−, Ti, Zr, Hf, V+, Nb+, Ta+). Our calculations revealed that there are three different lowest-energy structures with C2v, C3v, and Td symmetries for TM@C28. The HOMO–LUMO gap of all these structures ranges from 1.35 eV to 2.31 eV, in which [V@C28]+ has the lowest HOMO–LUMO gap of 1.35 eV. The molecular orbitals are mainly composed of fullerene cage orbitals and slightly encapsulated metal orbitals. The bonding analysis on the metal–cage interactions reveals they are dominated by the Coulomb term ΔEelstat and the orbital interaction term ΔEorb, in which the orbital interaction term ΔEorb contributes more than the Coulomb term ΔEelstat. The addition of one or two CF3 groups to [V@C28]+ could increase the HOMO–LUMO gap and further increase the stability of [V@C28]+. [ABSTRACT FROM AUTHOR]

Copyright of HOLOS is the property of Instituto Federal do Rio Grande do norte - IFRN and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Non-coding RNAs play a pivotal role in a number of diseases promoting an aberrant sequestration of nuclear RNA-binding proteins. In the particular case of myotonic dystrophy type 1 (DM1), a multisystemic autosomal dominant disease, the formation of large non-coding CUG repeats set up long-tract hairpins able to bind muscleblind-like proteins (MBNL), which trigger the deregulation of several splicing events such as cardiac troponin T (cTNT) and insulin receptor’s, among others. Evidence suggests that conformational changes in RNA are determinant for the recognition and binding of splicing proteins, molecular modeling simulations can attempt to shed light on the structural diversity of CUG repeats and to understand their pathogenic mechanisms. Molecular dynamics (MD) are widely used to obtain accurate results at atomistic level, despite being very time consuming, and they contrast with fast but simplified coarse-grained methods such as Elastic Network Model (ENM). In this paper, we assess the application of ENM (traditionally applied on proteins) for studying the conformational space of CUG repeats and compare it to conventional and accelerated MD conformational sampling. Overall, the results provided here reveal that ANM can provide useful insights into dynamic rCUG structures at a global level, and that their dynamics depend on both backbone and nucleobase fluctuations. On the other hand, ANM fail to describe local U-U dynamics of the rCUG system, which require more computationally expensive methods such as MD. Given that several limitations are inherent to both methods, we discuss here the usefulness of the current theoretical approaches for studying highly dynamic RNA systems such as CUG trinucleotide repeat overexpansions. [ABSTRACT FROM AUTHOR]

This paper depicts the first report from an Indian population on the association between the variant Arg399Gln of XRCC1 locus in the DNA repair system and schizophrenia, the debilitating disease that affects 1% of the world population. Genotypic analysis of a total of 523 subjects (260 patients and 263 controls) revealed an overwhelming presence of Gln399Gln in the case subjects against the controls (P < 0.0068), indicating significant level of association of this nsSNP with schizophrenia; the Gln399 allele frequency was also perceptibly more in cases than in controls (p < 0.003; OR = 1.448). The results of the genotypic studies were further validated using pathogenicity and stability prediction analysis employing computational tools [I-Mutant Suite, iStable, PolyPhen2, SNAP, and PROVEAN], with a view toassess the magnitude of deleteriousness of the mutation. The pathogenicity analysis reveals that the nsSNP could be deleterious inasmuch as it could affect the functionality of the gene, and interfere with protein function. Molecular dynamics simulation of 60ns was performed using GROMACS to analyse structural change due to a mutation (Arg399Gln) that was never examined before. RMSD, RMSF, hydrogen bonds, radius of gyration and SASA analysis showedthe existence of asignificant difference between the native and the mutant protein. The present study gives astrong indication that the XRCC1 locus deserves serious attention, as it could be a potential candidatecontributing to the etio-pathogenesis of the disease. [ABSTRACT FROM AUTHOR]

The increasing availability of computational data from quantum-chemical calculations on the reactivity and electronic structure of catalytically active oxidic systems make a revisitation of the classical questions on chemical bonding aspects of catalytically reactive systems useful. This Perspective paper starts with a short review of the different available systems. The elementary reactions that are part of the selective oxidation catalysis, such as substrate bond activation or oxygen insertion, are introduced. This is followed by a discussion of basic electronic features of the valence electron structure of oxide materials. We will initially compare the chemical bonding and reactivity of compounds with dominantly ionic versus covalent bonding. Surface reactivity descriptors for the two types of chemical bonds are indicated. It will appear that, except for longer range ionic interactions, binding to the metal cations is dominated by local covalent interactions and that ligand field theory type atomic orbital splitting as well as rehybridisation are important. Trends in bonding as a function of position of reducible metal in the periodic system are emphasized throughout the paper. At the surface, in addition to the changes in electronic structure, atom position relaxation and surface reconstruction effects may also have a large influence on the differences in reactivity. The reactivity of the oxygen atoms varies. They can be proton acceptors and generate Brønsted acidity, can assist heterolytic or radical type C H bond activation or when electrophilic will insert into hydrocarbon double bonds. At the end of the paper trends in catalytic reactivity are analyzed. The double volcano type curve found for the dependence of catalytic reactivity on the position of cation in the third row of the periodic system is shown to relate to the distribution of electrons with high spin over the ligand field split atomic orbitals of the respective cations. This will be discussed in the context of classical catalytic results that are based on Balandin type volcano plots of reactivity versus the catalyst material reactivity parameters. [ABSTRACT FROM AUTHOR]

[Display omitted] First-principles molecular dynamics simulations were used to investigate pressure- and temperature-induced phase transitions in different TaN polymorphs. The driving forces and intermediate structures were established for the CoSn-like TaN (ε phase) to WC-type TaN (θ phase) and ε to NaCl type-TaN (δ phase) structural transformations that were observed in experiments and for the θ to hP4-194, θ to cP2-221, δ to cP2-221 and δ to tP4-129 phase transitions that were predicted in this investigation. Other possible TaN polytypes were systematically investigated and five new prospective phases were found: oP8-25, oP12-25, hP8-194, tP8-105 and tI8-109. All new structures are thermodynamically, dynamically and mechanically stable, and their formation energy is only slightly higher than that of the θ phase (by 0.014–0.032 eV/atom). The relative stability, electronic structure, chemical bonding, vibrational spectra, elastic moduli and their spatial anisotropy, Vickers hardness, fracture toughness, Debye temperature and optical properties (real and imaginary parts of the dielectric function, reflectivity spectrum) of the tantalum mononitrides mentioned above were systematically calculated and discussed. The oP12-25, tP8-105 and tI8-109 novel phases exhibit the Vickers hardness (33.1–34.2 GPa), fracture toughness (5.52–5.59 MPa m1/2) and Debye temperatures (609.7–616.1 K) that are higher compared to those of the known TaN structures. The TaN polytypes with the strong Ta-N bonds with minimal fraction of ionicity were found to possess the best mechanical properties. Further experimental investigations are highly desirable to confirm the results presented in this paper. [ABSTRACT FROM AUTHOR]

The fine conformational subtleties of DNA structure modulate many fundamental cellular processes including gene activation/repression, cellular division, and DNA repair. Most of these cellular processes rely on the conformational heterogeneity of specific DNA sequences. Factors including those structural characteristics inherent in the particular base sequence as well as those induced through interaction with solvent components combine to produce fine DNA structural variation including helical flexibility and conformation. Cation-pi interactions between solvent cations or their first hydration shell waters and the faces of DNA bases form sequence selectively and contribute to DNA structural heterogeneity. In this paper, we detect and characterize the binding patterns found in cation-pi interactions between solvent cations and DNA bases in a set of high resolution x-ray crystal structures. Specifically, we found that monovalent cations (Tl+) and the polarized first hydration shell waters of divalent cations (Mg2+, Ca2+) form cation-pi interactions with DNA bases stabilizing unstacked conformations. When these cation-pi interactions are combined with electrostatic interactions a pattern of specific binding motifs is formed within the grooves. [ABSTRACT FROM AUTHOR]

Copyright of Revista Electrónica de Enseñanza de las Ciencias is the property of Revista Electronica de Ensenanza de las Ciencias and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Identifying the phase evolution and revealing the chemical bonds of hydrated cements accurately is crucial to regulate the performance of cementitious materials. In this paper, a coupled Raman/BSE-EDS analysis was proposed to determine the chemical bonds of tricalcium silicate hydrates and the interface transition zone (ITZ) between inner C-S-H and anhydrates. The results show that the Raman/BSE-EDS method can accurately identify the chemical bonds of inner C-S-H and inner ITZ regions, which confirms the mixed structure of inner C-S-H and nano calcium hydroxide (CH). The inner ITZ shows a lattice change region with a thickness of 700–1000 nm, which can be attributed to the pre-disassembly process of C3S crystal. The successful application of coupled Raman/BSE-EDS provides new insight into the hydration process and multi-structure features of traditional cementitious materials. [ABSTRACT FROM AUTHOR]

X-ray photoelectron spectroscopy (XPS) and energy dispersive X-ray spectroscopy (EDX) are applied to investigate the properties of fine-grained concentrates on artisanal, small-scale gold mining samples from the Kubi Gold Project of the Asante Gold Corporation near Dunwka-on-Offin in the Central Region of Ghana. Both techniques show that the Au-containing residual sediments are dominated by the host elements Fe, Ag, Al, N, O, Si, Hg, and Ti that either form alloys with gold or with inherent elements in the sediments. For comparison, a bulk nugget sample mainly consisting of Au forms an electrum, i.e., a solid solution with Ag. Untreated (impure) sediments, fine-grained Au concentrate, coarse-grained Au concentrate, and processed ore (Au bulk/nugget) samples were found to contain clusters of O, C, N, and Ag, with Au concentrations significantly lower than that of the related elements. This finding can be attributed to primary geochemical dispersion, which evolved from the crystallization of magma and hydrothermal liquids as well as the migration of metasomatic elements and the rapid rate of chemical weathering of lateralization in secondary processes. The results indicate that Si and Ag are strongly concomitant with Au because of their eutectic characteristics, while N, C, and O follow alongside because of their affinity to Si. These non-noble elements thus act as pathfinders for Au ores in the exploration area. This paper further discusses relationships between gold and sediments of auriferous lodes as key to determining indicator minerals of gold in mining sites. [ABSTRACT FROM AUTHOR]

Students' misconceptions before or after formal instruction have become a major concern among researchers in science education because they influence how students learn new scientific knowledge, play an essential role in subsequent learning and become a hindrance in acquiring the correct body of knowledge. In this paper some students' misconceptions on chemical bonding reported in the literature were investigated and presented. With this aim, a detailed literature review of chemical bonding was carried out and the collected data was presented from past to day historically. On the basis of the results some suggestions for teaching were made. [ABSTRACT FROM AUTHOR]

Robin Hendry has presented an account of two equally valid ways of understanding the nature of chemical bonding, consisting of what the terms the structural and the energetic views respectively. In response, Weisberg has issued a "challenge to the structural view", thus implying that the energetic view is the more correct of the two conceptions. In doing so Weisberg identifies the delocalization of electrons as the one robust feature that underlies the increasingly accurate quantum mechanical calculations starting with the Heitler-London method and moving on to such approaches as the valence bond and molecular orbital theories of chemical bonding. The present article provides a critical evaluation of Weisberg's article and concludes that he fails to characterize the nature of chemical bonding in several respects. I claim that Hendry's structural and energetic views remain as equally viable ways of understanding chemical bonding. Whereas the structural view is more appropriate for chemists, the energetic view is preferable to physicists. Neither view is more correct unless one subscribes to the naively reductionist view of considering that the more physical energetic view is the more correct one. [ABSTRACT FROM AUTHOR]

Inverse sandwich clusters composed of a monocyclic boron ring and two capping transition metal atoms are interesting alloy cluster systems, yet their chemical bonding nature has not been sufficiently elucidated to date. We report herein on the theoretical prediction of a new example of boron-based inverse sandwich alloy clusters, V2B7−, through computational global-minimum structure searches and quantum chemical calculations. This alloy cluster has a heptatomic boron ring as well as a perpendicular V2 dimer unit that penetrates through the ring. Chemical bonding analysis suggests that the inverse sandwich cluster is governed by globally delocalized 6π and 6σ frameworks, that is, double 6π/6σ aromaticity following the (4n + 2) Hückel rule. The skeleton B−B σ bonding in the cluster is shown not to be strictly Lewis-type two-center two-electron (2c-2e) σ bonds. Rather, these are quasi-Lewis-type, roof-like 4c-2e V−B2−V σ bonds, which amount to seven in total and cover the whole surface of inverse sandwich in a truly three-dimensional manner. Theoretical evidence is revealed for a 2c-2e Lewis σ single bond within the V2 dimer. Direct metal–metal bonding is scarce in inverse sandwich alloy clusters. The present inverse sandwich alloy cluster also offers a new type of electronic transmutation in physical chemistry, which helps establish an intriguing chemical analogy between inverse sandwich clusters and planar hypercoordinate molecular wheels. [ABSTRACT FROM AUTHOR]

Bonding in the C2 molecule is investigated with CAS(8,8) wave functions using canonical MOs. In a subsequent step, orthogonal atomic orbitals are constructed by localizing the CASSCF MOs on the two carbon atoms with an orthogonal transformation. This orbital transformation causes an orthogonal transformation of the configuration state functions (CSF) spanning the function space of the singlet ground state of C2. Instead of CSFs built from canonical MOs, one obtains CSFs of orthogonal deformed atomic orbitals (AO). This approach resembles the orthogonal valence bond (OVB) methods' CSFs, which are very different from the conventional VB, based on non-orthogonal AOs. To become used to the different argumentation, the bonding situations in ethane (single bond), ethene (double bond), and the nitrogen molecule (triple bond) are also studied. The complex bonding situation in C2 is caused by the possibility to excite an electron with a spin flip from the doubly occupied 2s AO into the 2p subshell, and the resulting high-spin 5 S u state of the carbon atom allows for a better reduction of the Pauli repulsion. However, the electron structure around the equilibrium distance does not allow one to say that C2 in its ground state has a double, or triple, or even a quadruple bond. [ABSTRACT FROM AUTHOR]

Inorganic silicate impregnation-modified fast-growing wood shows improved mechanical properties and thermal stability, but inorganic silicate agent loss and moisture absorption affect its processability. This study proposes a method to improve the impregnating agent loss and modified wood moisture absorption of poplar wood modified by using an acrylic acid emulsion/sodium silicate composite. The acrylic acid emulsion coated the sodium silicate and cell wall surfaces with a cured film that blocked water molecules from entering the modified wood. The acrylic acid emulsion adhered to the wood and sodium silicate, thus reducing impregnating agent loss. The addition of the acrylic acid emulsion maintained the excellent mechanical properties of sodium silicate-modified poplar wood and greatly improved its bending strength. The water absorption and moisture swelling rate were significantly decreased, and the dimensional stability of modified poplar wood was more than 50% higher than that of unmodified poplar wood. The thermogravimetric analysis (TG)results showed that the addition of organic components reduced the heat resistance of modified wood, but the thermal stability was still higher than unmodified wood. Fourier-transform infrared (FTIR) spectroscopy and X-ray photoelectron spectroscopy (XPS) results showed that acrylic esters in acrylic acid emulsion reacted with hydroxyl groups on sodium silicate and wood to form covalent bonds that improved the impregnating agent's resistance to loss and reduced the moisture absorption of the wood. The modified poplar wood showed better dimensional stability and water resistance. [ABSTRACT FROM AUTHOR]

The chemical bonding is usually not avoidable at a welding or fusion interface and sometimes is desirable to enhance the mechanical strength, while it might strongly affect the thermal contact resistance which plays a critical role in hindering heat dissipation of electronic devices. In this paper, we employ a non-equilibrium molecular dynamics method to study the effect of chemical bonding on the thermal contact resistance. Results show that the chemical bonding can greatly affect the thermal contact resistance. With the increase of the chemical bonding ratios, the thermal contact resistance firstly drops dramatically until arrives at a bonding ratio of about 20% where the thermal contact resistance is only about 15% that with a bonding ratio of 0%, and then gradually decreases to 0. Analyzing the spectral energy density of phonons at the interface, we conclude that the increase of the phonon velocity should be responsible for the decrease of the thermal contact resistance. By simulating the thermal contact resistance of silica with different morphologies (crystalline or amorphous silica), we found that different morphologies could lead to different thermal contact resistances, although this difference is less than 6%. This study is expected to provide references for managing thermal transport at a welding or fusion interface. [ABSTRACT FROM AUTHOR]

Better models to interpret physical properties as well as use of new preparative techniques have allowed in recent years the development of the predictive character of solid state chemistry. Various examples of this evolution have been given in this paper. It has been shown for instance that new materials (sometimes metastable ones) can be prepared, either by ion exchange or by chemical (or electrochemical) intercalation-deintercalation methods. The structural requirements of such reactions will be discussed. Another example is provided by the way one selects fast ionic conductors for energy storage. Various factors like amorphous nature, covalency, bond competition, presence of vacancies, influence of cationic lone pairs are discussed in the case of alkali ion or fluorine ion electrolytes. Attention is also paid to the stabilization of unusual electronic configurations, particularly for high oxidation states of transition elements, on the base of relevant structural and bonding considerations. In the field of magnetic properties, the possibility of obtaining new ferrimagnetic or ferromagnetic materials is discussed, as well as the ability to modify 1D-or 2D-behaviour of chain-or layer-type materials. Examples are also given showing how the performance of non-linear materials can be modified by playing with the factors determining structural distortions. Optical properties of materials are also strongly influenced by structural and bonding properties. It will be shown for instance how thanks to the relevant choice of a host, the lattice as well as the chemical composition of the material may lead to pure monochromatic 4 f UV emission in a Eu-doped material. Another example illustrates the possibility of obtaining a strong green emission in a[Ce, Tb]doped phosphate by choosing a formulation leading to best possible over-lapping of the Ce emission spectrum under appropriate UV illumination and the D → F excitation spectrum of Tb [ABSTRACT FROM AUTHOR]

[Display omitted] • The bicapped pentagonal prism and icosahedral geometry were found. • The species exhibit high stabilities, especially for closed-shell anionic clusters. • The enhanced stability of clusters can be explained by spherical aromaticity. • The delocalized bondings (4c-2e) are important in the clusters revealed by AdNDP. • The Au@Sn 12 cluster possesses the largest AEA value (3.00 eV). Group-14 (Ge, Sn, Pb) clusters have attracted a lot of attention not only because of their unique structural models but also the outstanding building blocks as cluster-assembled materials. In this paper, we have systematically investigated the structure, chemical stability, electronic property, spherical aromaticity, and bonding of neutral Au@X 12 (X = Ge, Sn, Pb) clusters and their anions using density-functional theory (DFT) calculations. It is found that the Au@Ge 12 cluster displays bicapped pentagonal prism geometry, whereas Au@X 12 (X = Sn, Pb) possess the perfect icosahedral geometry. Analysis of binding energy reveals that the species exhibit high chemical stabilities, especially for closed-shell anionic clusters, which contain 60 valence electrons. The hybridization between cage and Au enhances the chemical stability of clusters, while the enhanced stability can be explained by spherical aromaticity, confirmed by largely negative NICS values, of which eight π electrons satisfy 2(N + 1)2 counting rule, forming 2S22P6 set. The AdNDP analysis reveals that the delocalized chemical bonding is responsible for structural stabilization of clusters, e.g., eight delocalized 4c-2e σ-bonds on inner shell and five delocalized 4c-2e σ-bonds on outer shell. To summarize, the calculated results will provide further understanding for the design of novel building blocks as cluster-assembled nanomaterials. [ABSTRACT FROM AUTHOR]

Doping alkali metals into boron clusters can effectively compensate for the intrinsic electron deficiency of boron and lead to interesting boron-based binary clusters, owing to the small electronegativity of the former elements. We report on the computational design of a three-layered sandwich cluster, Na5B7, on the basis of global-minimum (GM) searches and electronic structure calculations. It is shown that the Na5B7 cluster can be described as a charge-transfer complex: [Na4]2+[B7]3−[Na]+. In this sandwich cluster, the [B7]3− core assumes a molecular wheel in shape and features in-plane hexagonal coordination. The magic 6π/6σ double aromaticity underlies the stability of the [B7]3− molecular wheel, following the (4n + 2) Hückel rule. The tetrahedral Na4 ligand in the sandwich has a [Na4]2+ charge-state, which is the simplest example of three-dimensional aromaticity, spherical aromaticity, or superatom. Its 2σ electron counting renders σ aromaticity for the ligand. Overall, the sandwich cluster has three-fold 6π/6σ/2σ aromaticity. Molecular dynamics simulation shows that the sandwich cluster is dynamically fluxional even at room temperature, with a negligible energy barrier for intramolecular twisting between the B7 wheel and the Na4 ligand. The Na5B7 cluster offers a new example for dynamic structural fluxionality in molecular systems. [ABSTRACT FROM AUTHOR]

Hypercoordinate transition-metal species are mainly dominated by the 18-valence-electron (18ve) counting. Herein, we report ternary MAl6S6 (M = Ni, Pd, Pt) clusters with the planar hexacoordinate metal (phM) centers, which feature 16ve counting instead of the classic 18ve rule. These global-minimum clusters are established via unbiased global searches, followed by PBE0 and single-point CCSD(T) calculations. The phM MAl6 units are stabilized by six peripheral bridging S atoms in these star-like species. Chemical bonding analyses reveal that there are 10 delocalized electrons around the phM center, which can render the aromaticity according to the (4n + 2) Hückel rule. It is worth noting that adding an (or two) electron(s) to its π-type lowest unoccupied molecular orbital (LUMO) will make the system unstable. [ABSTRACT FROM AUTHOR]

Several alkaline earth or rare earth binary monosilicides and -germanides possess complex bonding properties, such as polycation formation exceeding the scope of classical electron counting rules. In this study, we present characterization by powder and single-crystal diffraction and thermal analysis of CeGe, one of the few monogermanides crystallizing in the FeB-type structure. Comparative computational investigations for structure types experimentally observed for monogermanides and alternative structures with different structural motifs were performed to gain energetical insights into this family of compounds, underlining the preference for infinite germanium chains over other structural motifs. Formation enthalpy calculations and structural chemical analysis highlight the special position of FeB-type compounds among the monogermanides. [ABSTRACT FROM AUTHOR]