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Based on a three-year study on the prokaryotic community composition in peat bog lakes surrounded by a floating mat of Sphagnum sp. moss in the conditions of Northeast Poland (Central Europe), we verified the relationship between 20 water parameters and main Eubacteria and Archaea phyla for specific sites: the subsurface (pelagic zone), near-bottom (benthic zone), and the Sphagnum mat (ecotone zone). Abundance and composition of the main aquatic bacteria phyla (Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Deltaproteobacteria, Actinobacteria, and Cytophaga-Flavobacteria) and Archaea were associated with different combinations of physico-chemical parameters of water, and followed temporal variations of temperature, dissolved organic carbon (DOC), aromaticity, and water color. Redundancy analysis (RDA) showed that water acidity is a less significant predictor of bacterial activity; however, we have found Betaproteobacteria negatively correlated (r = −0.49, p = 0.01), while Actinobacteria positively correlated (r = 0.21, p = 0.05) to pH. This relation was the most significant in the ecotone zone. In the overall bacteria community structure Betaproteobacteria dominated (18.3%) regardless of site or season, except for winter when, at low temperatures and DOC concentrations, Actinobacteria increased to 22.9%. The Archaea fraction was uniform (11%) in seasons and sites and showed no specific preferences to physico-chemical predictors. Although the water parameters from the Sphagnum mat did not differ significantly from pelagic water, its role as a source of allochthonous organic matter is crucial for bacteria activity. The relations between peat bog lake attributes and seasonal changes in bacterial diversity demonstrated a distinct divergent pattern for each prokaryote. Obtaining results will provide support for any future evaluation of the effects of environmental variables on prokaryotic community structures in peat bog lakes [ABSTRACT FROM AUTHOR]

Meromictic lakes are permanently stratified lakes that display steep gradients in salinity, oxygen and sulphur compounds tightly linked to bacterial community structure and diversity. Lake Sælenvannet is a meromictic lake located south of Bergen, Norway. The 26 m deep lake is connected to the open sea and permanently stratified into two layers separated by a chemocline. The upper water layer is brackish with major input from water runoff from the surroundings. The bottom layer consists of old saline water with low or no oxygen concentrations. Bacteria from phylum Planctomycetes are reported to be ubiquitous in lake environments. They are involved in the degradation of complex carbon sources in aquatic environments and are also linked to anaerobic processes such as fermentation and sulphur reduction. To study Planctomycete distribution along a chemical gradient, we sampled the water column throughout Lake Sælenvannet in 2012 and profiled the microbial community using 16S rRNA amplicon sequencing (metabarcoding) with 454 pyrosequencing. Planctomycetes related 16S rRNA gene sequences were found to be present both in the oxic and anoxic parts of the lake and showed an uneven distribution throughout the water column, with the highest relative abundance of 10% found in the saline anoxic layer at 15 m depth. In a follow-up study in 2014, samples from eight different depths were collected for enrichment and isolation of novel Planctomycetes. This study resulted in successful isolation in pure culture of 10 isolates affiliated to four different genera from the family Planctomycetaceae. One strain closely related to Blastopirellula cremea was isolated from 9 m depth, and two novel strains affiliated to the genera Stieleria and Gimesia were isolated at 7 and 9 m depths, respectively. Furthermore, seven isolates with identical 16S rRNA gene sequences were retrieved from seven different depths which varied greatly in salinity and chemical composition. These isolates likely represent a new species affiliated to Rubinisphaera. The adaptation of this novel Planctomycete to water depths spanning the entire chemical gradient could indicate a high phenotypic plasticity and/or a very efficient survival strategy. Overall, our results show the presence of a diverse group of Planctomycetes in Lake Sælenvannet, with a strong potential for novel adaptations to chemical stress factors. [ABSTRACT FROM AUTHOR]