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Davidia involucrata Baill. 1871 (D. involucrata), as a tertiary relict plant unique to China, is a national Class I protected plant with high economic value. Oil extracted from its seeds and peels can be used for both consumption and industrial purposes. It has become a popular income-earning export tree in China because of its graceful posture and beautiful white bracts. Climate change affects the distribution of the species' potential habitat areas. Thus, studying its natural distribution pattern and future potential habitat distribution changes has great significance for the sustainable resource utilization and biodiversity conservation of D. involucrata. Here, we employed the MaxEnt model and ArcGIS software to predict the current and future (the 2050s and 2070s) potential habitats of D. involucrata via 130 species distribution records and 37 environmental variables. Meanwhile, we used the jackknife method to assess the importance of environmental factors. Our results showed the following: (1) When the RM = 4 and FC = LQHPT, the MaxEnt model exhibited the lowest complexity and overfitting degree while achieving high model prediction accuracy. The area under the curve (AUC) value of the simulated training was 0.958, indicating an excellent forecast. (2) Under the current climate scenario, D. involucrata was mainly concentrated in eastern Sichuan, western Hubei, northern Guizhou, and northwestern Hunan, with an area of 98.02 × 104 km2. (3) The precipitation in the warmest quarter (Bio18, 30%), mean temperature in the driest quarter (Bio9, 24.4%), annual mean radiation (Bio20, 14.6%), and elevation (ele, 12.7%) were the main environmental factors affecting its habitat distribution; the t contribution was 82.1%. (4) Under different future climate scenarios, the potential habitat area of D. involucrata decreased overall. Compared with the current climate scenario, the areas of potential habitats gradually decreased in both the 2050s and 2070s under the ssp126 and ssp585 climate scenarios but decreased in the 2050s and then increased in the 2070s under the ssp370 climate scenario. Therefore, it is of great significance to track and monitor the existing population or community on the basis of the possible changes in its distribution area. Moreover, the artificial breeding of its seedlings should be considered in the future to improve the quality of its germplasm resources. In summary, our findings can provide a scientific understanding of D. involucrata distribution in China and are conducive to conservation and utilization. [ABSTRACT FROM AUTHOR]

The effective protection and utilization of poultry resources depend on an accurate understanding of the genetic diversity and population structure. The breeding of the specialized poultry lineage "Yufen 1", with its defined characteristics, was approved by the China Poultry Genetic Resource Committee in 2015. Thus, to investigate the relationship between the progenitor H line and other poultry breeds, the genetic diversity and population structure of "Yufen 1" H line (YF) were investigated and compared with those of 2 commercial chicken breeds, the ancestor breed Red Jungle Fowls, and 11 Chinese indigenous chicken breeds based on a whole-genome resequencing approach using 8,112,424 SNPs. The genetic diversity of YF was low, and the rate of linkage disequilibrium decay was significantly slower than that of the other Chinese indigenous breeds. In addition, it was shown that the YF population was strongly selected during intensive breeding and that genetic resources have been seriously threatened, which highlights the need to establish a systematic conservation strategy as well as utilization techniques to maintain genetic diversity within YF. Moreover, a principal component analysis, a neighbor-joining tree analysis, a structure analysis, and genetic differentiation indices indicated that YF harbors a distinctive genetic resource with a unique genetic structure separate from that of Chinese indigenous breeds at the genome level. The findings provide a valuable resource and the theoretical basis for the further conservation and utilization of YF. [ABSTRACT FROM AUTHOR]

The "Yufen 1" H line chicken (YF) has excellent characteristics including early sexual maturity and high egg production, and the conservation of its genetic diversity is the core of the breeding activity. To overcome misrepresented breeds and protect the integrity of the germplasm genetic resources, it is important to develop accurate and convenient methods to identify YF. In this study, whole genome resequencing was performed on the YF population, and bioinformatics analysis was conducted by combining the data from different breeds. Linkage disequilibrium (LD) analysis revealed that YF had the slowest LD-decay rate, suggesting strong natural and artificial selection in its history. Through selective sweep analysis, 1,126 selected regions in YF were identified, which contained 163,661 single nucleotide polymorphisms (SNPs). In particular, 5 specific SNPs (SNP1: Chr2:45509616, SNP2: Chr2:45510792, SNP3: Chr9:13788193, SNP4: Chr9:13795646, SNP5: Chr9:13798154) were found exclusively in the YF population. Subsequently, PCR amplification and Sanger sequencing confirmed the presence of these 5 SNPs in YF. Finally, 4 SNPs (SNP1, SNP2, SNP4, SNP5) were screened and verified using the Kompetitive Allele Specific PCR (KASP) typing technique. These SNPs can be used as specific molecular identity cards (IDs) for YF authentication. The present study is of great significance to ensure sustainable conservation and promotion of YF germplasm resources. [ABSTRACT FROM AUTHOR]

The conservation of genetic resources is becoming increasingly important for the sustainable development of the poultry industry. In the present study, we systematically analyzed the population structure, conservation priority, runs of homozygosity (ROH) of chicken breeds globally, and proposed rational conservation strategies. We used a 600K Affymetrix Axiom HD genotyping SNP array dataset of 2,429 chickens from 134 populations. The chickens were divided into 5 groups based on their country of origin and sampling location: Asian chickens (AS-LOC), African chickens (AF), European local chickens (EU-LOC), Asian breeds sampled in Germany (AS-DE), and European breeds sampled in Germany (EU-DE). The results indicated that the population structure was consistent with the actual geographical distribution of the populations. AS-LOC had the highest positive contribution to the total gene (HT , 1.00%,) and allelic diversity (AT , 0.0014%), the lowest inbreeding degree and the fastest linkage disequilibrium (LD) decay rate; the lowest contribution are derived by European ex situ chicken breeds (EU-DE:HT = −0.072%, AT = −0.0014%), which showed the highest inbreeding and slowest LD decay. Breeds farmed in ex situ (AS-DE, EU-DE) conditions exhibited reduced genetic diversity and increased inbreeding due to small population size. Given limited funds, it is a better choice for government to conserve the breeds with the highest contribution to genetic diversity in each group. Therefore, we evaluated the contribution of each breed to genetic and allelic diversity in 5 groups. Among each group, KUR(AF), BANG(AS-LOC), ALxx(EU-LOC), BHwsch(AS-DE), and ARw(EU-DE) had the highest contribution to gene diversity in the order of the above grouping. Similarly, according to the allelic diversity standard (in the same order), ZIMxx, PIxx, ALxx, SHsch, and ARsch had the highest contribution. After analyzing ROH, we found a total of 144,708 fragments and 27 islands. The gene and genome regions identified by the ROH islands and QTLs indicate that chicken breeds have potential for adaptation to different production systems. Based on these findings, it is recommended to prioritize the conservation of breeds with the highest genetic diversity in each group, while paying more attention to the conservation of Asian and African breeds. Furthermore, providing a valuable reference for the conservation and utilization of chicken. [ABSTRACT FROM AUTHOR]