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[Context] Robust assessment of functional connectivity in amphibian population networks is essential to address their global decline. The potential of graph theory to characterize connectivity among amphibian populations has already been confirmed, but the movement data on which modelled graphs rely are often scarce and inaccurate. While probabilistic methods that account for intraspecific variability in dispersal better reflect the biological reality of functional connectivity, they must be informed by systematically recorded individual movement data, which are difficult to obtain for secretive taxa like amphibians., [Objectives] Our aim is to assess the applied potential of probabilistic graph theory to characterize overall connectivity across amphibian pondscapes using finescale capture-recapture data, and to inform conservation management based on the role of ponds on functional connectivity., [Methods] We monitored an amphibian community in a pondscape located in a Spanish “dehesa” for 2 years. Photoidentification was used to build capture histories for individuals of six species, from which dispersal kernels and population sizes were estimated to model probabilistic graphs., [Results] We obtained kernels of variable robustness for six species. Node importance for connectivity varied between species, but with common patterns such as shared road crossing areas and the presence of coincident interconnected pond clusters., [Conclusions] The combination of photoidentification, capture-recapture data and graph theory allowed us to characterize functional connectivity across the pondscape of study accounting for dispersal variability and identify areas where conservation actions could be most efficient. Our results highlight the need to account for interspecific differences in the study and management of amphibian pondscapes., Open Access funding provided thanks to the CRUE-CSIC agreement with Springer Nature. This study was funded by FEDER/Ministerio de Ciencia, Innovación y Universidades– Agencia Estatal de Investigación, Spain, Grants CGL2017-83131-P and PID2020-116289GB-I00. Ismael Reyes-Moya was supported by a Formación de Personal Universitario (FPU) grant from the Spanish Ministry of Culture and Education.

We describe the advertisement call of the Nanling horned frog, Boulenophrys nanlingensis for the first time, based on recordings obtained from four individuals. One of these individuals, which was identified using its dorsum pattern, was recorded twice after nine months. Distinct shifts in the temporal parameters and call rate were observed from calls of the re-captured individual, which was suspected to be related to temperature and social context. However, due to the limited sample size, further research is needed to confirm these findings. We highlight the potential of mark-recapture method using dorsum pattern for studying and monitoring the Nanling horned frog and other megophyinid frogs.

Understanding the spatial use of reintroduced fish is useful for fisheries management and evaluating restoration success. Atlantic salmon (Salmo salar) were reintroduced into Lake Ontario in the 1990s; however, the movement ecology of these land-locked fish is unknown. Using acoustic telemetry and Floy tag mark-recaptures, we examined seasonal home range and space use of Atlantic salmon in Lake Ontario. Hatchery-raised adult Atlantic salmon were tagged with acoustic transmitters (n = 14; 8 with depth sensors) or Floy tags (n = 1915) and released. Both acoustic telemetry and Floy tag recaptures (n = 90) indicated cross lake movements, and home ranges encompassed nearly the entire lake in summer but was smaller in winter. Movements were nearshore (

Maruotti et al. 2022 used a mark-recapture approach to estimate bounds on the true number of monkeypox infections in various countries. We show that such approaches are fundamentally flawed. We argue on conceptual grounds that it is impossible to estimate undercounting based solely on a single stream of reported cases, supporting our contention by applying the authors' method to simulated epidemics. The simulations show that the proposed methods estimate bounds on the ascertainment ratio of ≈0.2-0.5 roughly independently of the true ascertainment ratio. We conclude that the proposed mark-recapture approach should not be used to estimate undercounting or ascertainment ratios. This article is protected by copyright. All rights reserved. Public Health Agency of Canada, NSERC (Discovery grants)

Ecological release is often attributed to the rapid adaptive diversification of phenotypic traits. However, it is not well understood how natural selection changes its strength and direction through the process of ecological release. Herein, we demonstrated how shell colour of the Japanese land snail Euhadra peliomphala simodae has diversified via a shift in natural selection due to ecological release after migration from the mainland to an island. This snail's shell colour diversified on the island due to disruptive selection after migration from the mainland. We used trail camera traps to identify the cause of natural selection on both the mainland and the island. We then conducted a mark–recapture experiment while collecting microhabitat use data. In total, we captured and marked around 1,700 snails on the mainland, some of which were preyed upon by an unknown predator. The trail camera traps showed that the predator is the large Japanese field mouse Apodemus speciosus, and the predatory frequency was higher on the mainland than on the island. However, this predation did not correlate with shell colour. Microhabitat use on the island was more extensive than on the mainland, with snails on the island using both ground and arboreal microhabitats. A Bayesian estimation showed that the stabilizing selection on shell colour came from factors other than predation. Our results suggest that the course of natural selection was modified due to ecological release after migration from the mainland, explaining one cause of the phenotypic diversification., Our study demonstrates how snails' shell colour has diversified through the process of ecological release. We clarified that predation modified the natural selection via the microhabitat shift although the selection was caused from other factors.

The Arctic Ocean is undergoing rapid transformation toward a seasonally ice‐free ecosystem. As ice‐adapted apex predators, polar bears (Ursus maritimus) are challenged to cope with ongoing habitat degradation and changes in their prey base driven by food‐web response to climate warming. Knowledge of polar bear response to environmental change is necessary to understand ecosystem dynamics and inform conservation decisions. In the southern Beaufort Sea (SBS) of Alaska and western Canada, sea ice extent has declined since satellite observations began in 1979 and available evidence suggests that the carrying capacity of the SBS for polar bears has trended lower for nearly two decades. In this study, we investigated the population dynamics of polar bears in Alaska's SBS from 2001 to 2016 using a multistate Cormack–Jolly–Seber mark–recapture model. States were defined as geographic regions, and we used location data from mark–recapture observations and satellite‐telemetered bears to model transitions between states and thereby explain heterogeneity in recapture probabilities. Our results corroborate prior findings that the SBS subpopulation experienced low survival from 2003 to 2006. Survival improved modestly from 2006 to 2008 and afterward rebounded to comparatively high levels for the remainder of the study, except in 2012. Abundance moved in concert with survival throughout the study period, declining substantially from 2003 and 2006 and afterward fluctuating with lower variation around an average of 565 bears (95% Bayesian credible interval [340, 920]) through 2015. Even though abundance was comparatively stable and without sustained trend from 2006 to 2015, polar bears in the Alaska SBS were less abundant over that period than at any time since passage of the U.S. Marine Mammal Protection Act. The potential for recovery is likely limited by the degree of habitat degradation the subpopulation has experienced, and future reductions in carrying capacity are expected given current projections for continued climate warming., As ice‐adapted apex predators, polar bears (Ursus maritimus) are challenged to cope with the ongoing habitat degradation and changes in their prey base driven by food web response to climate warming. We investigated the population dynamics of polar bears in Alaska's southern Beaufort Sea (SBS) using a multistate CJS mark–recapture model. Abundance declined during several consecutive years of poor survival and afterward fluctuated in concert with survival but without sustained trend, averaging 565 bears from 2006 to 2015, the lowest level since passage of the US Marine Mammal Protection Act.

Individual-based field observations of breeding snowy plovers

Aquatic habitats in the Great Plains of North America have increased risk of droughts under climate forecasts. Droughts have the potential to influence the population dynamics of pond turtles, and long-term studies are useful to assess the impact of climatic variation on turtles. We compiled twelve years of mark-recapture data for painted turtles (Chrysemys picta) captured in a pond in Keith County, Nebraska during 2005–2016 that included two periods of drought. We used a robust design analysis to investigate influences on population size, annual survival, temporary immigration, and capture probability. Estimates of the annual population size ranged from 92 (CI: 90–94) to 180 (CI: 175–186) but did not vary with drought conditions. Despite a relatively stable depth of water in our study pond, the probability of annual survival was reduced by 0.07 in females and 0.10 in males during drought years. Approximately one-fifth (temporary emigration probability: 0.19, CI = 0.16–0.23) of the population was outside the study pond at any given time. Our long-term research provides insights into the potential challenges to turtles in aquatic habitats undergoing prolonged changes in long-term climate conditions.

Small mammals is a non-taxonomic subgroup named on the basis of body size of individuals. This study was created from data obtained through the mark-recapture method of small terrestrial mammals in Populus tremula, thermophilic deciduous, steppes, conifer plantations and Abies sp. forest habitats in Turkey. Field studies were performed for a total of 14 months in 2014 and 2015. 758 individuals from seven species were captured in a total of 5250 days in trapping grid studies conducted in a total of 5 different types of habitat by a grid of 5 ? 5 traps system. The average capture success in all was calculated as 14.44%. The species affected by temperature data were M. glareolus and D. nitedula. It was found that M. subterraneus showing increasing populations was negatively correlated with temperature. When considering the sex ratios, M. glareolus was under intense male pressure in steppe habitat. Indicator species were determined numerically and M. glareolus, M. subterraneus and D. nitedula were found to be decisive species for different habitats. The habitats showing most similarity to each other in terms of habitat preferences of small mammals the pine plantation and Abies forest, the most different habitat was steppe. Research Fund of Hacettepe UniversityHacettepe University [FBA-2015-5840] I wish to thank Dr. Burak Akbaba for their help in the field studies. Also, thanks to Deniz Candas for the help in translation and final editing of this paper. Legal permissions for this study were provided by The Turkish Ministry of Agriculture and Forestry, General Directorate of Nature Conservation and National Parks. This study was supported by the Research Fund of Hacettepe University (Nr. FBA-2015-5840) and it is part of the PhD thesis of Safak Bulut. WOS:000637972200010 2-s2.0-85100119696

Understanding the relative strengths of intrinsic and extrinsic factors regulating populations is a long-standing focus of ecology and critical to advancing conservation programs for imperiled species. Conservation could benefit from an increased understanding of factors influencing vital rates (somatic growth, recruitment, survival) in small, translocated populations, which is lacking owing to difficulties in long-term monitoring of rare species. Translocations, here defined as the transfer of wild-captured individuals from source populations to new habitats, are widely used for species conservation, but outcomes are often minimally monitored, and translocations that are monitored often fail. To improve our understanding of how translocated populations respond to environmental variation, we developed and tested hypotheses related to intrinsic (density dependent) and extrinsic (introduced rainbow trout Oncorhynchus mykiss, stream flow and temperature regime) causes of vital rate variation in endangered humpback chub (Gila cypha) populations translocated to Colorado River tributaries in the Grand Canyon (GC), USA. Using biannual recapture data from translocated populations over 10 years, we tested hypotheses related to seasonal somatic growth, and recruitment and population growth rates with linear mixed-effects models and temporal symmetry mark-recapture models. We combined data from recaptures and resights of dispersed fish (both physical captures and continuously recorded antenna detections) from throughout GC to test survival hypotheses, while accounting for site fidelity, using joint live-recapture/live-resight models. While recruitment only occurred in one site, which also drove population growth (relative to survival), evidence supported hypotheses related to density dependence in growth, survival, and recruitment, and somatic growth and recruitment were further limited by introduced trout. Mixed-effects models explained between 67% and 86% of the variation in somatic growth, which showed increased growth rates with greater flood-pulse frequency during monsoon season. Monthly survival was 0.56-0.99 and 0.80-0.99 in the two populations, with lower survival during periods of higher intraspecific abundance and low flood frequency. Our results suggest translocations can contribute toward the recovery of large-river fishes, but continued suppression of invasive fishes to enhance recruitment may be required to ensure population resilience. Furthermore, we demonstrate the importance of flooding to population demographics in food-depauperate, dynamic, invaded systems.

As part of the mitigation measures adopted in the context of preparatory clearcutting for surface mining, Hazel Dormice have been translocated since 2011. The project is situated in the geographical region of Lower Rhine Basin (North Rhine-Westphalia, Germany). To date, Hazel Dormice have been translocated from an old-growth deciduous forest to four other sites. Three release sites are re-cultivation areas which were planted with trees and shrubs roughly 10 to 30 years ago. The other release site is an old-growth deciduous forest with a well-developed understory. Nest boxes were placed in the source forest and checked between April and October. Any dormice that were found were individually marked and released, inside their nest boxes, at the new sites. Two or three additional nest boxes were placed within the surroundings of each translocated box. Between 2011 and 2018 we translocated 1,840 individuals. We verify the success of translocation by monitoring the release sites in June and September of the first, second, fifth and eighth year after translocation. Additionally, a sample of 200 nest boxes were checked each month between April and October for five years. Finally, we examined groups of nest boxes shortly after translocation to gather information on the translocated animals immediately after release. Individual records reveals that translocation can be a successful conservation measure to secure local populations if their former habitat is damaged.

Long time series of reliable individual growth estimates are crucial for understanding the status of a fish stock and deciding upon appropriate management. Tagging data provide valuable information about fish growth, and are especially useful when age-based growth estimates and stock assessments are compromised by age-determination uncertainties. However, in the literature there is a lack of studies assessing possible changes in growth over time using tagging data. Here, data from tagging experiments performed in the Baltic Sea between 1971 and 2019 were added to those previously analysed for 1955–1970 to build the most extensive tagging dataset available for Eastern Baltic cod (Gadus morhua, Gadidae), a threatened stock with severe age-determination problems. Two length-based methods, the GROTAG model (based on the von Bertalanffy growth function) and a Generalized Additive Model, were used to assess for the first time the potential long-term changes in cod growth using age-independent data. Both methods showed strong changes in growth with an increase until the end of the 1980s (8.6–10.6cm/year for a 40cm cod depending on the model) followed by a sharp decline. This study also revealed that the current growth of cod is the lowest observed in the past 7 decades (4.3–5.1cm/year for a 40cm cod depending on the model), indicating very low productivity. This study provides the first example of the use of tagging data to estimate multidecadal changes in growth rates in wild fish. This methodology can also be applied to other species, especially in those cases where severe age-determination problems exist.

Baited Remote Underwater Video Stations (BRUVS) are widely used for monitoring relative abundances of fishes, especially sharks, but only the maximum number of individuals seen at any one time (MaxN) is usually recorded. In both the Cayman Islands and the Amirante Islands, Seychelles, we used photo-ID to recognise individual sharks recorded on BRUVS videos. This revealed that for most species the actual numbers of separate individuals (IndN) visiting the BRUVS were significantly higher than MaxN, with, for example, ratios of IndN to MaxN being 1.17 and 1.24 for Caribbean reef, Carcharhinus perezi, and nurse, Ginglymostoma cirratum, sharks in the Cayman Islands, and 2.46 and 1.37 for blacktip reef, C. melanopterus, and grey reef, C. amblyrhynchos, sharks, respectively, in the Amirantes. Further, for most species, increasing the BRUVS deployment period beyond the 60 min normally used increased the observed IndN, with more than twice as many individuals in the Cayman Islands and &gt, 1.4 times as many individuals in the Amirantes being recorded after 120 min as after 60 min. For most species, MaxN and IndN rose exponentially with time, so data from different deployment periods cannot reliably be compared using catch-per-unit-effort (CPUE) calculated as catch-per-unit-time. In both study areas, the time of first arrival of individuals varied with species from &lt, 1 min to &gt, 2 h. Individually identifiable sharks were re-sighted after up to 429 days over 10 km away in the Cayman Islands and 814 days over 23 km away in the Amirantes, demonstrating that many individuals range over considerable distances. Analysis of Cayman re-sightings data yielded mean population estimates of 76 &plusmn, 23 (SE) and 199 &plusmn, 42 (SE) for C. perezi and G. cirratum, respectively. The results demonstrate that, for sharks, the application of both photo-identification and longer deployment periods to BRUVS can improve the precision of abundance estimates and provide knowledge of population size and ranging behaviour.

n Focus: Reneerkens, J., Versluijs, T. S. L., Piersma, T., Alves, J. A., Boorman, M., Corse, C., ... Lok, T. (2020). Low fitness at low latitudes: wintering in the tropics in-creases migratory delays and mortality rates in an Arctic breeding shorebird. Journal of Animal Ecology, 89, 691–703. A central question in migratory ecology has been to understand the fitness consequences of individual variation in migration distance among different species and populations. Reneerkens et al. (2020) investigated the demographic consequences of long-distance migration for Sanderlings Calidris alba, an Arctic-breeding species of sandpiper. Their study population has a remark-able geographic distribution with a breeding range that is concentrated in north-east Greenland and Ellesmere Island, Canada but a nonbreeding range that extends across 85° of latitude from Scotland to Namibia. The authors report on unexpected patterns of latitudinal variation in three demographic parameters: timing of passage on northward migration, probability of juvenile migration and apparent survival of adults. Sanderlings travelling 1,800–2,800 km to settle at north temperate sites dur-ing the nonbreeding season had earlier passage dates, and also higher probabilities of migration and apparent survival. In contrast, birds travelling 6,000–7,800 km to equato-rial sites experienced later passage dates, delayed maturity and lower apparent survival. However, if Sanderlings migrated even farther and flew over 11,000 km to nonbreed-ing sites in Namibia, then their performance was restored to early passage dates and higher survival. Movement tracks from birds tagged with geolocators showed that birds wintering in Namibia make nonstop flights of 7,500 km that bypass West Africa during northward migration. Thus, all lines of evidence suggest that Sanderlings face adversity when spending the nonbreeding season at equatorial latitudes. Moreover, the central finding that components of fitness can have nonlinear relationships with migration dis-tance is a novel discovery that leads to many additional questions. The new findings have broader implications for theoretical models of migration, and for understanding how different patterns of movements may arise or be maintained in migratory species

Many fishes are critically imperiled, particularly in their native rivers, due to human water use and dam construction, which can dramatically alter habitats and block fish migratory routes. The introduction of invasive sport-fishes that prey on native fish further threatens native species that maybe restricted to only a single river basin (i.e., “endemic”). To preserve native fishes in river systems with degraded habitats, managers need to understand the effects of conservation actions to ensure limited resources are applied effectively. Two commonly applied native fish conservation actions include removal of invasive fishes, and translocations of native fish from one place into another with suitable habitat to establish new populations. My primary research goals were 1) to assess the population-level native fish responses to invasive fish removal, 2) understand what factors lead to successful establishment of new endangered humpback chub populations through translocations of juveniles, and 3) to investigate alternative strategies for reducing invasive brown trout using angling, disturbance of eggs, and electrofishing, in multiple connected populations (i.e., trout move between them)experiencing different levels of warming and climate change. My research was conducted using data collected over 10 years in the Colorado River and its tributaries in Grand Canyon National Park. I found native fish populations increased by about 480% when invasive trout populations were reduced by 60% or more. Increases in native fish were also greatest in warmer areas in years when spring flooding occurred. Translocated humpback chub populations were limited when numbers of introduced rainbow trout were higher and when floods washed ash from a fire into one stream in 2014. However, I found flooding was generally beneficial to humpback chub, which was probably because additional food was washed into their habitats. Finally, while future declines in Colorado River reservoir storage and warming of streamflow may reduce brown trout, successful Grand Canyon-wide reductions would require increasing trout removals throughout the river system particularly in tributary climate change refuges. In summary, translocations can contribute toward native fish conservation, but continued invasive fish removal and protection of natural river flow are also critical to meeting conservation goals.

Mitigation translocation remains a popular conservation tool despite ongoing debate regarding its utility for population conservation. To add to the understanding of the effectiveness of mitigation translocation, in 2017 and 2018 we monitored a population of protected common chuckwallas (Sauromalus ater) following translocation away from the area of construction of a new highway near the South Mountains, Phoenix, Arizona, USA. We removed chuckwallas from the construction right-of-way, paint-marked and pit-tagged them, and then released them in a nearby municipal preserve. We deployed very high frequency radio-telemetry transmitters on a sub-sample of 15 translocated adult chuckwallas. We monitored the radio-marked chuckwallas once a day at 1- to 3-day intervals for up to 46 days to document survival, body mass, and post-release movements. The average distance moved following translocation was 359 ± 53 m. Using minimum convex polygons, the average home range size of translocated lizards was 0.9 ± 0.3 ha, which was 18–45 times larger than expected for the species. Following translocations, we surveyed the translocation sites 1 month later and again 1 year later to determine the presence of translocated chuckwallas. Translocated individuals were rarely observed a second time: in 2017, only 11 of 160 translocated chuckwallas were seen again, and in 2018, only 11 of 192 translocated chuckwallas were detected. In the light of low recapture rate, consistent loss of body mass, and large movements of marked lizards, we conclude that survival of translocated chuckwallas was low over a single year. In the future, efficacy of mitigation translocation could be better evaluated by assessing the spatial ecology of both resident and translocated individuals simultaneously using radio-telemetry.

Unbiased population density estimates are critical for ecological research and wildlife management but are often difficult to obtain. Researchers use a variety of sampling and statistical methods to generate estimates of density, but few studies have compared estimates across methods. During 2016–2017, we surveyed Canada lynx (Lynx canadensis) in southwestern Yukon Territory, Canada, using track transect counts, hair snares, camera traps, live traps, and Global Positioning System (GPS) collars. From these data, we estimated lynx density with two linearly scaled count methods, one spatial mark–recapture method, three spatial mark–resight methods, and one cumulative‐time method. We found up to fivefold variation in point density estimates despite adhering to method requirements and assumptions in a manner consistent with other studies. Our results highlight the dependency of density estimates on sampling process and model assumptions and demonstrate the value of careful and unbiased sampling design. Further research is needed to fully assess the accuracy and limitations of the many wildlife density estimation methods that are currently in use so that techniques can be appropriately applied to typical study systems and species.

International audience; AbstractUnderstanding animal movement is critical for conservation planning, habitat management, and ecological study. However, our understanding is often limited by methodological constraints. These limitations can be especially problematic in the study of ecologically and economically important pollinators like bumble bees, where several aspects of their biology limit the feasibility of landscape-scale studies. We review the methods available for the study of bumble bee movement ecology, discussing common limitations and tradeoffs among several frequent data sources. We provide recommendations on appropriate use for different life stages and castes, emphasizing where recent methodological advances can help reveal key components of understudied parts of the bumble bee life cycle such as queen movement and dispersal. We emphasize that there is no one correct method and encourage researchers planning studies to carefully consider the data requirements to best address questions of interest.

Long‐distance migration is a common phenomenon across the animal kingdom but the scale of annual migratory movements has made it difficult for researchers to estimate survival rates during these periods of the annual cycle. Estimating migration survival is particularly challenging for small‐bodied species that cannot carry satellite tags, a group that includes the vast majority of migratory species. When capture–recapture data are available for linked breeding and non‐breeding populations, estimation of overall migration survival is possible but current methods do not allow separate estimation of spring and autumn survival rates. Recent development of a Bayesian integrated survival model has provided a method to separately estimate the latent spring and autumn survival rates using capture–recapture data, though the accuracy and precision of these estimates has not been formally tested. Here, I used simulated data to explore the estimability of migration survival rates using this model. Under a variety of biologically realistic scenarios, I demonstrate that spring and autumn migration survival can be estimated from the integrated survival model, though estimates are biased toward the overall migration survival probability. The direction and magnitude of this bias are influenced by the relative difference in spring and autumn survival rates as well as the degree of annual variation in these rates. The inclusion of covariates can improve the model's performance, especially when annual variation in migration survival rates is low. Migration survival rates can be estimated from relatively short time series (4–5 years), but bias and precision of estimates are improved when longer time series (10–12 years) are available. The ability to estimate seasonal survival rates of small, migratory organisms opens the door to advancing our understanding of the ecology and conservation of these species. Application of this method will enable researchers to better understand when mortality occurs across the annual cycle and how the migratory periods contribute to population dynamics. Integrating summer and winter capture data requires knowledge of the migratory connectivity of sampled populations and therefore efforts to simultaneously collect both survival and tracking data should be a high priority, especially for species of conservation concern.

Background Over the past two decades, various species of forage fish have been successfully implanted with miniaturized acoustic transmitters and subsequently monitored using stationary acoustic receivers. When acoustic receivers are configured in an array, information related to fish direction can potentially be determined, depending upon the number and relative orientation of the acoustic receivers. However, it can be difficult to incorporate directional information into frequentist mark-recapture methods. Here we show how an empirical Bayesian approach can be used to develop a model that incorporates directional movement information into the Arnason-Schwarz modeling framework to describe survival and migration patterns of a Pacific herring (Clupea pallasii) population in coastal Alaska, USA. Methods We acoustic-tagged 326 adult Pacific herring during April 2017 and 2018 while on their spawning grounds in Prince William Sound Alaska, USA. To monitor their movements, stationary acoustic receivers were deployed at strategic locations throughout the Sound. Receivers located at the major entrances to the Gulf of Alaska were arranged in parallel arrays to determine the directional movements of the fish. Informative priors were used to incorporate the directional information recorded at the entrance arrays into the model. Results A seasonal migratory pattern was found at one of Prince William Sound’s major entrances to the Gulf of Alaska. At this entrance, fish tended to enter the Gulf of Alaska during spring and summer after spawning and return to Prince William Sound during the fall and winter. Fish mortality was higher during spring and summer than fall and winter in both Prince William Sound and the Gulf of Alaska. Conclusions An empirical Bayesian modeling approach can be used to extend the Arnason-Schwarz modeling framework to incorporate directional information from acoustic arrays to estimate survival and characterize the timing and direction of migratory movements of forage fish.

Geographically isolated wetland and surrounding landscape features affect the ecology and life history of amphibian species. We used multistate mark recapture methods and data from over 30,000 captures of adult Ambystoma opacum to explore how survival, breeding, and movement probabilities differed among wetlands surrounded by regenerating 20-year-old clearcuts and mature 100-year-old forest stands. Survival varied among ponds and years but did not differ between regenerating and mature forest habitats. Both sexes at all ponds incurred dramatic mortality during the non-breeding season of a drought year (2001–2002). Females that skipped one or more breeding opportunities had higher breeding probabilities the following year than did successive breeders. Females exiting into regenerating forests had lower breeding probabilities at two of the three ponds. Breeding salamanders tended to make local movements from regenerating to mature forests, particularly when exiting the pond basin. Landscape movements between ponds were generally low, with few individuals moving from mature to regenerating forest habitats. We conclude that clearcuts continue to negatively impact some demographic parameters of salamanders 20 years post-cutting, but other environmental factors may mitigate these effects, and that populations are probably capable of complete recovery, particularly if some mature forest is retained.

Funding: This work was part-funded by the Royal Society of New Zealand Marsden grant UOA-1418, Leverhulme grant RF-2018-213\9 and EPSRC IAA grant ‘High Definition digital aerial survey software’. We anticipate that unmanned aerial vehicles will become popular wildlife survey platforms. Because detecting animals from the air is imperfect, we develop a mark‐recapture line transect method using two digital cameras, possibly mounted on one aircraft, which cover the same area with a short time delay between them. Animal movement between the passage of the cameras introduces uncertainty in individual identity, so individual capture histories are unobservable and are treated as latent variables. We obtain the likelihood for mark‐recapture line transects without capture histories by automatically enumerating all possibilities within segments of the transect that contain ambiguous identities, instead of attempting to decide identities in a prior step. We call this method “Latent Capture‐history Enumeration” (LCE). We include an availability model for species that are periodically unavailable for detection, such as cetaceans that are undetectable while diving. External data are needed to estimate the availability cycle length, but not the mean availability rate, if the full availability model is employed. We compare the LCE method with the recently developed cluster capture‐recapture method (CCR), which uses a Palm likelihood approximation, providing the first comparison of CCR with maximum likelihood. The LCE estimator has slightly lower variance, more so as sample size increases, and close to nominal coverage probabilities. Both methods are approximately unbiased. We illustrate with semisynthetic data from a harbor porpoise survey. Postprint

According to the International Union for Conservation of Nature Red List, 41% of the world's amphibian species are threatened with extinction, making them more threatened than any other vertebrate group nowadays. Given the global amphibian crisis, comprehensive understanding of demographics and population trends of declining and threatened species is essential for effective management and conservation strategies. Counting egg spawns is widely used to assess population abundance in pond breeding anurans. However, it is unknown how such counts translate into robust population size estimations. We monitored the breeding activity of the Natterjack toad (Epidalea calamita), combining egg string counts and individual photo-identification with Capture-Mark-Recapture population size and operational sex ratio estimation. Male Natterjack toads were identified by the pattern of natural markings with repeated ID of the same individual confirmed for 10% of the samples using genetic fingerprinting. We identified 647 unique individuals within a closed study population at Caherdaniel, Co Kerry. Population estimates derived from egg string counts estimated a breeding population of 368 females (95% CI 353–384) and Capture-Mark-Recapture estimated a breeding population of 1698 males (95% CI 1000–2397). The female:male sex ratio was conservatively estimated at 1:5 (95% CI 1:3–1:6) where 62% ± 6% of females were assumed to spawn. These substantially departed from any priori assumption of 1:1 which could have underestimated the breeding population by up to 72%. Where amphibian absolute population size estimation is necessary, methods should include empirical survey data on operational sex ratios and not rely on assumptions or those derived from the literature which may be highly population and/or context-dependent.

Mark-recapture techniques have been widely used and specialized to study organisms throughout the field of biology. To mark-recapture ticks (Ixodida), we have created a simple method to mark ticks using nail polish applied with an insect pin secured in a pencil that allows for a variety of questions to be answered. For measuring tick control efficacy, estimating population estimates, or measuring movement of ticks, this inexpensive mark-recapture method has been easily applied in the field and in the lab to provide useful data to answer a variety of questions about ticks.

Seasonal environmental conditions shape the behavior and life history of virtually all organisms. Climate change is modifying these seasonal environmental conditions, which threatens to disrupt population dynamics. It is conceivable that climatic changes may be beneficial in one season but result in detrimental conditions in another because life-history strategies vary between these time periods. We analyzed the temporal trends in seasonal survival of yellow-bellied marmots (Marmota flaviventer) and explored the environmental drivers using a 40-y dataset from the Colorado Rocky Mountains (USA). Trends in survival revealed divergent seasonal patterns, which were similar across age-classes. Marmot survival declined during winter but generally increased during summer. Interestingly, different environmental factors appeared to drive survival trends across age-classes. Winter survival was largely driven by conditions during the preceding summer and the effect of continued climate change was likely to be mainly negative, whereas the likely outcome of continued climate change on summer survival was generally positive. This study illustrates that seasonal demographic responses need disentangling to accurately forecast the impacts of climate change on animal population dynamics.

Long-term data from marked animals provide a wealth of opportunities for studies with high relevance to both basic ecological understanding and successful management in a changing world. The key strength of such data is that they allow us to quantify individual variation in vital rates (e.g. survival, growth, reproduction) and then link it mechanistically to dynamics at the population level. However, maintaining the collection of individual-based data over long time periods comes with large logistic efforts and costs and studies spanning over decades are therefore rare. This is the case particularly for migratory aquatic species, many of which are in decline despite their high ecological, cultural and economical value. This paper describes two unique publicly available time series of individual-based data originating from a 51-year mark-recapture study of a land-locked population of large-sized migratory brown trout (Salmo trutta) in Norway: the Hunder trout. In the period 1966-2015, nearly 14,000 adult Hunder trout have been captured and individually marked during their spawning migration from Lake Mjøsa to the river Gubrandsdalslågen. Almost a third of those individuals were later recaptured alive during a later spawning run and/or captured by fishermen and reported dead or alive. This has resulted in the first data series: a mark-recapture-recovery dataset spanning half a century and more than 18,000 capture records. The second data series consists of additional data on juvenile and adult growth and life-history schedules from half of the marked individuals, obtained by means of scale-sample analysis. The two datasets offer a rare long-term perspective on individuals and population dynamics and provide unique opportunities to gain insights into questions surrounding management, conservation and restoration of migratory salmonid populations and freshwater ecosystems.

Background Long-term data from marked animals provide a wealth of opportunities for studies with high relevance to both basic ecological understanding and successful management in a changing world. The key strength of such data is that they allow us to quantify individual variation in vital rates (e.g. survival, growth, reproduction) and then link it mechanistically to dynamics at the population level. However, maintaining the collection of individual-based data over long time periods comes with large logistic efforts and costs and studies spanning over decades are therefore rare. This is the case particularly for migratory aquatic species, many of which are in decline despite their high ecological, cultural and economical value. New information This paper describes two unique publicly available time series of individual-based data originating from a 51-year mark-recapture study of a land-locked population of large-sized migratory brown trout (Salmo trutta) in Norway: the Hunder trout. In the period 1966-2015, nearly 14,000 adult Hunder trout have been captured and individually marked during their spawning migration from Lake Mjøsa to the river Gubrandsdalslågen. Almost a third of those individuals were later recaptured alive during a later spawning run and/or captured by fishermen and reported dead or alive. This has resulted in the first data series: a mark-recapture-recovery dataset spanning half a century and more than 18,000 capture records. The second data series consists of additional data on juvenile and adult growth and life-history schedules from half of the marked individuals, obtained by means of scale-sample analysis. The two datasets offer a rare long-term perspective on individuals and population dynamics and provide unique opportunities to gain insights into questions surrounding management, conservation and restoration of migratory salmonid populations and freshwater ecosystems.

The marking of Drosophila suzukii can be an important instrument for studying the ecology and behaviour of this economically important fruit pest, aiding the development of new Integrated Pest Management (IPM) tools or strategies. There is, however, a need for a cost-effective methodology that provides an easily detectable and stable mark. Whereas fluorescent pigment powders are often used in entomological research, the pigments (series, dyes), application techniques, or doses need to be evaluated for each studied species in terms of their efficacy and possible adverse effects on the performance of the insect. The effectiveness of different application techniques and dyes (RadGlo® TP-series) and their effect on the survival of adult D. suzukii were investigated in the laboratory. Furthermore, the influence of the marking on the behaviour of the flies was examined in laboratory trap assays (olfaction) and a field recapture study (general orientation). The persistence and detectability of the marks was evaluated both on living flies (for different application techniques) and dead flies under trapping/storage conditions. The use of fluorescent powders to mark D. suzukii flies yielded a clearly detectable and highly persistent mark, without any adverse effects on the survival and behaviour of the flies.

There have been no long-term field studies of the potential effect of spay/neuter programs on free-roaming domestic cat population sizes. To address that gap via citizen science, we are developing a novel approach to photographic mark-recapture population research that engages volunteers as both smartphone-wielding data collectors and as online data processors in building capture histories from submitted photos. Here, we present a validation study testing the accuracy of cat advocate volunteers at matching smartphone photos of cats, and we compare their success to a reference group of life science university students. We also examine feline photographic identification from two additional perspectives: what makes a volunteer better at cat identification, and what makes a cat photo more identifiable? 151 cat advocates and 17 students completed 37,800 pairwise photo comparisons using our online platform. Cat advocates’ matching attempts (n = 34,080) were correct 98.1% of the time compared with students’ 97.5% (n = 3,720). Volunteers who reported a pet cat increased their accuracy. Volunteers who held less than a bachelor’s degree, or those who volunteered with cats previously, had reduced accuracy. If a cat was a color other than black, its ability to be identified increased. We demonstrated that our citizen science volunteer sample was not only adequate at identifying individual cats in smartphone photos, but performed better than our sample of life science students—a labor pool commonly trusted to organize data from camera trap research. While photographs are the data foundation of many studies of free-roaming cats, we are the first to analyze by-eye visual identification in this species.

Sound decisions on the management of fish stocks depend on knowledge about the species composition, number, biomass and size structure of existing populations. Accordingly, the ability to make solid population estimates is essential. In this study, a 2.15 ha lake was completely drained and the total number of fish was recorded and amounted to 180,915 individuals divided into seven species having a total weight of 1,395 kg. Before the draining, three commonly used methods in fish surveys were applied: multi-mesh gillnets, point abundance sampling by electrofishing (PASE) and mark–recapture. Following the determination of the actual number and size distribution of each species, we evaluated the efficiency of the methods and found that gillnets caught a relatively high number of species (five out of seven) and thus proved to be the best tool for mapping species richness. However, gillnets were size selective towards larger individuals of perch (Perca fluviatilis) and did not catch roach (Rutilus rutilus)

Atlantic salmon, Salmo salar L., is found throughout the North Atlantic, with thousands of rivers having spawning populations. In Greenland, spawning is limited to one river in West Greenland, the Kapisillit River (64˚N), and the salmon are limited to the lower few kilometres of the system. Using mark–recapture, it was estimated the parr population was 5,953 individuals, and that the population size has declined by 52% since 1959. In spite of this decline, parr density remains high, being between 0.26 and 0.62 parr/m². Using a historical age‐length key, an estimated minimum of 635 smolt will have descended to the sea in 2017. These will be caught in a fishery currently subject to no regulatory measures and fishing remains the most likely driver of the population decline. The genetically distinct population is endemic to Greenland, and managers should implement measures to conserve this genetic integrity and local biodiversity.

Habitat destruction and fragmentation alter the quality of habitats and put populations under the risk of extinction. Changes in population parameters can provide early warning signs of negative impacts. In tropical forests, where habitat loss and fragmentation are vast, such indicators are of high relevance for directing conservation efforts before effects are irreversible. Most of our knowledge from tropical ecosystems originates from community level surveys, whereas our understanding of the influence of habitat conversion on vital rates of species is limited. This study focused on the influence of anthropogenic habitat fragmentation on the survival probability and abundance of three leaf-litter frog species (Rhinellaornata, Ischnocnemaguentheri and I.parva) in forest patches of the Atlantic rainforest of South-east Brazil compared to a continuous forest. The species differ in their matrix tolerance: high for R.ornata and low for I.guentheri and I.parva and, thus, we examined whether their survival and abundance correspond to this classification. Ischnocnemaguentheri showed highest abundances in all study sites and low mortality in the forest patches compared to the continuous forest; I.parva was encountered only in isolated fragments, with very low mortality in one isolated fragment; and the matrix tolerant species had generally low abundance and showed no clear pattern in terms of mortality in the different sites. Our counter-intuitive results show that even matrix sensitive amphibian species may show high abundance and low mortality in small forest patches. Therefore, these patches can be of high value for amphibian conservation regardless of their degree of matrix aversion. Landscape level conservation planning should not abandon small habitat patches, especially in highly fragmented tropical environments.

Scarce Heath Coenonympha hero is considered to be one of the most seriously threatened European butterflies, especially declining in western and central Europe. It usually occurs in small, discrete colonies forming metapopulation systems, but the exchange of individuals between habitat patches is considered limited. Therefore the persistence of the species in fragmented systems is likely to depend largely on the demography of local populations. We investigated a highly isolated population of the species in Poland with mark-release-recapture (MRR). The seasonal population size was assessed at 168 adults, with a well balanced sex ratio. The slightly higher capture probability of females that we recorded is quite atypical for butterflies and may be related to the vegetation structure at the site. The flight period was relatively short (22 days), and the adult life span was estimated at 6.59 days, i.e., twice as long when compared with adult longevity in two other threatened Coenonympha species. Consequently, the temporal fragmentation index (i.e., the ratio of flight period length to adult life span) was calculated at 3.3, which is the lowest value recorded among all congeneric species, suggesting that temporal fragmentation is not a major problem in the investigated population. Nevertheless, the population may be at risk of extinction due to its small size and isolation. Moreover, the area of C. hero habitat has decreased considerably over the last decade due to afforestation. Our findings indicate the need for immediate conservation actions, in particular for the removal of tree seedlings that encroach on the butterfly habitat.

Measuring rates and causes of mortalities is important in animal ecology and management. Observing the fates of known individuals is a common method of estimating life history variables, including mortality patterns. It has long been assumed that data lost when known animals disappear were unbiased. We test and reject this assumption under conditions common to most, if not all, studies using marked animals. We illustrate the bias for 4 endangered wolf populations in the United States by reanalyzing data and assumptions about the known and unknown fates of marked wolves to calculate the degree to which risks of different causes of death were mismeasured. We find that, when using traditional methods, the relative risk of mortality from legal killing measured as a proportion of all known fates was overestimated by 0.05–0.16 and the relative risk of poaching was underestimated by 0.17–0.44. We show that published government estimates are affected by these biases and, importantly, are underestimating the risk of poaching. The underestimates have obscured the magnitude of poaching as the major threat to endangered wolf populations. We offer methods to correct estimates of mortality risk for marked animals of any taxon and describe the conditions under which traditional methods produce more or less bias. We also show how correcting past and future estimates of mortality parameters can address uncertainty about wildlife populations and increase the predictability and sustainability of wildlife management interventions.

Linking dispersal to population growth remains a challenging task and is a major knowledge gap, for example, for conservation management. We studied relative roles of different demographic rates behind population growth in Siberian flying squirrels in two nest‐box breeding populations in western Finland. Adults and offspring were captured and individually identifiable. We constructed an integrated population model, which estimated all relevant annual demographic rates (birth, local [apparent] survival, and immigration) as well as population growth rates. One population (studied 2002–2014) fluctuated around a steady‐state equilibrium, whereas the other (studied 1995–2014) showed a numerical decline. Immigration was the demographic rate which showed clear correlations to annual population growth rates in both populations. Population growth rate was density dependent in both populations. None of the demographic rates nor the population growth rate correlated across the two study populations, despite their proximity suggesting that factors regulating the dynamics are determined locally. We conclude that flying squirrels may persist in a network of uncoupled subpopulations, where movement between subpopulations is of critical importance. Our study supports the view that dispersal has the key role in population survival of a small forest rodent.

In 2010, Northwest Marine Technology introduced a more rigid visible implant alphanumeric (VIA) tag that substantially improved the tag loading and injecting process. To achieve these improvements, VIA tag size and composition was modified, thereby potentially influencing previously examined VIA tag retention rates on Walleye Sander vitreus. Effects of total length (TL), sex, and days post-tagging on retention of VIA tags injected underneath the lower mandible of adult Walleye were evaluated from 2012 to 2016. Walleye (n = 2455) collected from natural lakes in Iowa were measured, sexed, and injected with identical VIA tags on each side (left and right) of the lower mandible. Of 366 Walleye recaptured up to four years post-tagging, 241 had both tags; the remaining fish had retained only one tag. Overall, tag retention adjusted for fish that lost both tags (n = 14) was 80% (607 of 760). Retention of VIA tags was not influenced by sex, TL at time of marking, or number of days post-tagging and did not substantially differ from previously examined large-format VIA retention rates. In studies requiring high tag retention in Walleyes, VIA tags injected into the clear tissue underneath the mandible should be avoided.

Background Stable isotope labeling is a promising method for use in insect mark-capture and dispersal studies. Culicoides biting midges, which transmit several important animal pathogens, including bluetongue virus (BTV) and epizootic hemorrhagic disease virus (EHDV), are small flies that develop in various semi-aquatic habitats. Previous Culicoides dispersal studies have suffered from the limitations of other labeling techniques, and an inability to definitively connect collected adult midges to specific immature development sites. Results Adult C. sonorensis were successfully labeled with 13C and 15N stable isotopes as larvae developing in a semi-aquatic mud substrate in the laboratory. High and low-dose isotope treatments for both elements significantly enriched midges above the background isotope levels of unenriched controls. Enrichment had no effect on C. sonorensis survival, though a slight (~ 5 day) delay in emergence was observed, and there was no significant effect of pool size on 13C or 15N enrichment levels. Conclusions Stable isotope labeling is life-long, and does not interfere with natural insect behaviors. Stable isotope enrichment using 13C or 15N shows promise for Culicoides dispersal studies in the field. This method can be used to identify adult dispersal from larval source habitat where a midge developed. It may be possible to detect a single enriched midge in a pool of unenriched individuals, though further testing is needed to confirm the sensitivity of this method.

Mark-recapture methods constitute a set of classical ecological tools that are used to collect information on species dispersal and population size. These methods have advanced knowledge in disparate scientific fields, from conservation biology to pest control. Gathering information on the dispersal of mosquito species, such as Aedes aegypti, has become critical since the recognition of their role as vectors of pathogens. Here, we evaluate a method to mark mosquitoes that exploits the rare alkali metals rubidium (Rb) and caesium (Cs), which have been used previously to mark adult insects through feeding. We revised this method by adding Rb and Cs directly to water in which the immature stages of Ae. aegypti were allowed to develop. We then assessed the effect of Rb- and Cs-enriched water on fitness, survival and bioaccumulation in both adult females and their eggs. Results indicated that Cs had adverse effects on Ae. aegypti, even at low concentrations, whereas Rb at low concentrations had no measured effects on exposed individuals and accumulated at detectable levels in adult females. The method described here relies on passive uptake of Rb during immature stages, which has the benefit of avoiding handling or manipulation of the dispersive adults, which enables purer measurement of movement. Moreover, we demonstrated that Rb was transferred efficiently from the marked females to their eggs. To our knowledge, Rb is the only marker used for mosquitoes that has been shown to transfer vertically from females to eggs. The application of Rb rather than more traditional markers may therefore increase the quality (no impact on released individuals) and quantity (both adults and eggs are marked) of data collected during MR studies. The method we propose here can be used in combination with other markers, such as stable isotopes, in order to maximize the information collected during MR experiments.

Mesomycetozoean-induced infections (order Dermocystida, genusAmphibiocystidium) in European and North American amphibians are causing alarm. To date, the pathogenicity of these parasites in field conditions has been poorly studied, and demographic consequences on amphibian populations have not been explored. In this study, anAmphibiocystidiumsp. infection is reported in a natural population of the Italian stream frog (Rana italica) of Central Italy, over a 7-year period from 2008 to 2014. Light and electron microscope examinations, as well as partial 18S rDNA sequence analysis were used to characterize the parasite. Moreover, a capture-mark-recapture study was conducted to assess the frog demographics in response to infection. Negative effects of amphibiocystidiosis on individual survival and population fitness were absent throughout the sampling period, despite the high estimates of disease prevalence. This might have been due to resistance and/or tolerance strategies developed by the frogs in response to the persistence ofAmphibiocystidiuminfection in this system. We hypothesized that in the examinedR. italicapopulation, amphibiocystidiosis is an ongoing endemic/epidemic infection. However, ecological and host-specific factors, interacting in a synergistic fashion, might be responsible for variations in the susceptibility toAmphibiocystidiuminfection of both conspecific populations and heterospecific individuals ofR. italica.

The response of biodiversity to land-use change has been a central focus in applied ecological research for close to half a century. However, despite a vast body of literature, our understanding of how species traits influence demographic vital rates in anthropogenically-modified habitats is remarkably scant. Such an understanding is crucial because vital rates determine population viability in modified habitats, and underlie emergent occupancy, abundance and community-level patterns. I use 5,298 captures of 3,310 individuals of 20 species across seven years to test how four traits—(a) inherent survival, (b) body size, (c) social behaviour, and (d) migratory strategy—influence annual survival in selectively logged versus intact forest in tropical montane eastern Himalayan birds. In general, variation in body mass and alternative behavioural strategies (e.g., mixed-species flocking versus solitary behaviour) were not associated with survival differences in intact forest. However, species with high inherent survival, year-round residents, and species that did not participate in mixed-species flocks had appreciably lower survival in logged forest compared with intact forest. Solitary foragers, for instance, faced a 30% decline in survival in logged forest compared with intact forest. Non-migratory habit and solitary foraging behaviour might make species vulnerable to extinction in logged forest through reduced survival, an especially important process in influencing population viability. Identifying how species’ traits modulate their response to land-use change by altering survival rates is crucial to predict species responses to forest modification, and to better plan and manage biodiversity-friendly forest use.

Long‐distance migration is a common phenomenon across the animal kingdom but the scale of annual migratory movements has made it difficult for researchers to estimate survival rates during these periods of the annual cycle. Estimating migration survival is particularly challenging for small‐bodied species that cannot carry satellite tags, a group that includes the vast majority of migratory species. When capture–recapture data are available for linked breeding and non‐breeding populations, estimation of overall migration survival is possible but current methods do not allow separate estimation of spring and autumn survival rates. Recent development of a Bayesian integrated survival model has provided a method to separately estimate the latent spring and autumn survival rates using capture–recapture data, though the accuracy and precision of these estimates has not been formally tested. Here, I used simulated data to explore the estimability of migration survival rates using this model. Under a variety of biologically realistic scenarios, I demonstrate that spring and autumn migration survival can be estimated from the integrated survival model, though estimates are biased toward the overall migration survival probability. The direction and magnitude of this bias are influenced by the relative difference in spring and autumn survival rates as well as the degree of annual variation in these rates. The inclusion of covariates can improve the model’s performance, especially when annual variation in migration survival rates is low. Migration survival rates can be estimated from relatively short time series (4–5 years), but bias and precision of estimates are improved when longer time series (10–12 years) are available. The ability to estimate seasonal survival rates of small, migratory organisms opens the door to advancing our understanding of the ecology and conservation of these species. Application of this method will enable researchers to better understand when mortality occurs across the annual cycle and how the migratory periods contribute to population dynamics. Integrating summer and winter capture data requires knowledge of the migratory connectivity of sampled populations and therefore efforts to simultaneously collect both survival and tracking data should be a high priority, especially for species of conservation concern.

Outbreaks of fibropapillomatosis (FP), a neoplastic infectious disease of marine turtles, have occurred worldwide since the 1980s. Its most likely aetiological agent is a virus, but disease expression depends on external factors, typically associated with altered environments. The scarcity of robust long-term data on disease prevalence has limited interpretations on the impacts of FP on turtle populations. Here we model the dynamics of FP at 2 green turtle foraging aggregations in Puerto Rico, through 18 yr of capture-mark-recapture data (1997−2014). We observed spatiotemporal variation in FP prevalence, potentially modulated via individual site-fidelity. FP ex pression was residency dependent, and FP-free individuals developed tumours after 1.8 ± 0.8 yr (mean ± SD) in the infected area. Recovery from the disease was likely, with complete tumour regression occurring in 2.7 ± 0.7 yr (mean ± SD). FP does not currently seem to be a major threat to marine turtle populations; however, disease prevalence is yet unknown in many areas. Systematic monitoring is highly advisable as human-induced stressors can lead to deviations in host− pathogen relationships and disease virulence. Finally, data collection should be standardized for a global assessment of FP dynamics and impacts. Natural and Environmental Resources of Puerto Rico (DNER); US National Marine Fisheries Service (NMFSNOAA Section 6); US Fish and Wildlife Service, Chelonia; WIDECAST; Fundação para a Ciência e a Tecnologia (FCT) info:eu-repo/semantics/publishedVersion

Somatic growth rate data for wild sea turtles can provide insight into life‐stage durations, time to maturation, and total lifespan. When appropriately validated, the technique of skeletochronology allows prior growth rates of sea turtles to be calculated with considerably less time and labor than required by mark‐–recapture studies. We applied skeletochronology to 10 dead, stranded green turtles Chelonia mydas that had previously been measured, tagged, and injected with OTC (oxytetracycline) during mark–recapture studies in Hawaii for validating skeletochronological analysis. We tested the validity of back‐calculating carapace lengths (CLs) from diameters of LAGs (lines of arrested growth), which mark the outer boundaries of individual skeletal growth increments. This validation was achieved by comparing CLs estimated from measurements of the LAG proposed to have been deposited closest to the time of tagging to actual CLs measured at the time of tagging. Measureable OTC‐mark diameters in five turtles also allowed us to investigate the time of year when LAGs are deposited. We found no significant difference between CLs measured at tagging and those estimated through skeletochronology, which supports calculation of somatic growth rates by taking the difference between CLs estimated from successive LAG diameters in humerus bones for this species. Back‐calculated CLs associated with the OTC mark and growth mark deposited closest to tagging indicated that annual LAGs are deposited in the spring. The results of this validation study increase confidence in utilization of skeletochronology to rapidly obtain accurate age and growth data for green turtles.

Introduction:The Conservation Action Plan of the Orinococrocodile(Crocodylusintermedius)includes inits activities the releaseofcaptive-bred specimensback into the wild. Bymonitoring these specimens in their natural habitat their adaptability is assessed. However,anaccurateidentification system is necessary to recognize the individuals when they are recaptured.Objetive:Determinate ifSwanepoelor Boucheret al.for crocodile identificationfortheOrinococrocodileisuseful.Methods:A total of543 Orinococrocodileswere photographedand each photo wasvectorizedby drawing dark spots greater than 25%foreachscute, in the first 10 lines of double caudal scales of the tail on the right side. Twosystemcodeswereevaluated, oneis a numeric code described bySwanepoeland the other is an additive code described by Boucheret al.Results:A total of464Swanepoelcodes and 537 Boucheret al.codes based on the dark spot pattern of the scales on the right side of the tailswere generated for the 543 specimens. Both methods yielded high code values, however, the one developed by Boucheret al., with a 98.90% differentiation of the analyzed specimens, worked better.Conclusion:The study confirms that using the method of spots in the tail of crocodiles is an effective toolforidentifyingindividual crocodiles. Introducción:El Plan de acción para la conservación del caimán del Orinoco (Crocodylusintermedius) entre sus actividades está la liberación de las poblaciones naturales con ejemplares criados en cautiverio, por medio del seguimiento de dichos ejemplares en su hábitat natural se evalúa su adaptabilidad, pero es necesario un sistema de identificación que permita reconocer los ejemplares cuando son recapturados.Objetivo:Determinar si el método de identificación de cocodrilos propuestos porSwanepoelo Boucheret al.esaplicable en el caimán del Orinoco.Metodología:Se fotografiaron 543 caimanes de Orinoco y cada foto sevectorizódibujando puntos oscuros mayores al 25% en cada escama, en las primeras 10 líneas de escamas dobles caudales de la cola en el lado derecho, se usaron dos sistema de codificación, uno es un código numérico descrito porSwanepoely el otro es un código aditivo descrito por Boucheret al.Resultados:Segeneraron464 códigosSwanepoely 537 códigos Boucheret al.basadoen el patrón de coloración oscura de las escamas del lado derecho de las colas.Ambos métodos arrojaron altos valores de códigos, sin embargo funciono mejor el desarrollado por Boucheret al., con un 98,90% de diferenciación de los ejemplares analizados.Conclusión:El estudio ratifica que utilizar el método de las manchas en la cola de los cocodrilos es una herramienta eficaz en la identificación de los individuos.

The marking of Drosophila suzukii can be an important instrument for studying the ecology and behaviour of this economically important fruit pest, aiding the development of new Integrated Pest Management (IPM) tools or strategies. There is, however, a need for a cost-effective methodology that provides an easily detectable and stable mark. Whereas fluorescent pigment powders are often used in entomological research, the pigments (series, dyes), application techniques, or doses need to be evaluated for each studied species in terms of their efficacy and possible adverse effects on the performance of the insect. The effectiveness of different application techniques and dyes (RadGlo&reg, TP-series) and their effect on the survival of adult D. suzukii were investigated in the laboratory. Furthermore, the influence of the marking on the behaviour of the flies was examined in laboratory trap assays (olfaction) and a field recapture study (general orientation). The persistence and detectability of the marks was evaluated both on living flies (for different application techniques) and dead flies under trapping/storage conditions. The use of fluorescent powders to mark D. suzukii flies yielded a clearly detectable and highly persistent mark, without any adverse effects on the survival and behaviour of the flies.

Aerial survey is an important, widely employed approach for estimating free‐ranging wildlife over large or inaccessible study areas. We studied how a distance covariate influenced probability of double‐observer detections for birds counted during a helicopter survey in Canada’s central Arctic. Two observers, one behind the other but visually obscured from each other, counted birds in an incompletely shared field of view to a distance of 200 m. Each observer assigned detections to one of five 40‐m distance bins, guided by semi‐transparent marks on aircraft windows. Detections were recorded with distance bin, taxonomic group, wing‐flapping behavior, and group size. We compared two general model‐based estimation approaches pertinent to sampling wildlife under such situations. One was based on double‐observer methods without distance information, that provide sampling analogous to that required for mark–recapture (MR) estimation of detection probability, p^, and group abundance, G^, along a fixed‐width strip transect. The other method incorporated double‐observer MR with a categorical distance covariate (MRD). A priori, we were concerned that estimators from MR models were compromised by heterogeneity in p^ due to un‐modeled distance information; that is, more distant birds are less likely to be detected by both observers, with the predicted effect that p^ would be biased high, and G^ biased low. We found that, despite increased complexity, MRD models (ΔAICc range: 0–16) fit data far better than MR models (ΔAICc range: 204–258). However, contrary to expectation, the more naïve MR estimators of p^ were biased low in all cases, but only by 2%–5% in most cases. We suspect that this apparently anomalous finding was the result of specific limitations to, and trade‐offs in, visibility by observers on the survey platform used. While MR models provided acceptable point estimates of group abundance, their far higher stranded errors (0%–40%) compared to MRD estimates would compromise ability to detect temporal or spatial differences in abundance. Given improved precision of MRD models relative to MR models, and the possibility of bias when using MR methods from other survey platforms, we recommend avian ecologists use MRD protocols and estimation procedures when surveying Arctic bird populations.

Understanding the relationship between environmental factors and vital rates is an important step in predicting a species’ response to environmental change. Species associated with sea ice are of particular concern because sea ice is projected to decrease rapidly in polar environments with continued levels of greenhouse gas emissions. The relationship between sea ice and the vital rates of the Spectacled Eider, a threatened species that breeds in Alaska and Russia and winters in the Bering Sea, appears to be complex. While severe ice can impede foraging for benthic prey, ice also suppresses wave action and provides a platform on which eiders roost, thereby reducing thermoregulation costs. We analyzed a 23‐year mark‐recapture dataset for Spectacled Eiders nesting on Kigigak Island in western Alaska, and tested survival models containing different ice and weather‐related covariates. We found that much of the variation in eider survival could be explained by the number of days per year with >95% sea ice concentration at the Bering Sea core wintering area. Furthermore, the data supported a quadratic relationship with sea ice rather than a linear one, indicating that intermediate sea ice concentrations were optimal for survival. We then used matrix population models to project population trajectories using General Circulation Model (GCM) outputs of daily sea ice cover. GCMs projected reduced sea ice at the wintering area by year 2100 under a moderated emissions scenario (RCP 4.5) and nearly ice‐free conditions under an unabated emissions scenario (RCP 8.5). Under RCP 4.5, stochastic models projected an increase in population size until 2069 coincident with moderate ice conditions, followed by a decline in population size as ice conditions shifted from intermediate to mostly ice‐free. Under RCP 8.5, eider abundance increased until 2040 and then decreased to near extirpation toward the end of the century as the Bering Sea became ice‐free. Considerable uncertainty around parameter estimates for survival in years with minimal sea ice contributed to variation in stochastic projections of future population size, and this uncertainty could be reduced with additional survival data from low‐ice winters.

Dispersal is a critical determinant of animal distribution and population dynamics, and is essential information for management planning. We studied the movement patterns and the influence of habitat and biotic factors on Mediterranean brown trout (Salmo trutta) by mark-recapture methods in three headwater streams of the Ebro Basin (NE Iberian Peninsula). Fish were sampled by electrofishing on five occasions over 18–24 months and movements of over 3,000 individually tagged trout (age 1+ onwards) were recorded. Most of the tagged fish exhibited limited movement and were recaptured within 100 m from the initial capture section. Small seasonal differences in the movement pattern were observed, but in two of the streams, displacement distances increased prior the spawning period in autumn. The frequency distributions of dispersal distances were highly leptokurtic and skewed to the right and fitted well to a two-group exponential model, thus trout populations were composed of mobile and stationary individuals, the latter being the predominant component in the populations (71.1–87.5% of individuals). The mean dispersal distances, for fish captured at least in three sampling events, ranged 20.7–45.4 m for the stationary group and 229.4–540.5 m for the mobile group. Moving brown trout were larger than non-moving individuals and exhibited higher growth rates in two of the streams. Habitat features were not consistently linked to movement rates, but there were some interaction effects between stream and habitat characteristics such as depth, cover and water velocity. This research was supported by the Biodiversity Conservation Plan of ENDESA through the project PIE 121043-00-FECSA.

I describe an open‐source R package, multimark, for estimation of survival and abundance from capture–mark–recapture data consisting of multiple “noninvasive” marks. Noninvasive marks include natural pelt or skin patterns, scars, and genetic markers that enable individual identification in lieu of physical capture. multimark provides a means for combining and jointly analyzing encounter histories from multiple noninvasive sources that otherwise cannot be reliably matched (e.g., left‐ and right‐sided photographs of bilaterally asymmetrical individuals). The package is currently capable of fitting open population Cormack–Jolly–Seber (CJS) and closed population abundance models with up to two mark types using Bayesian Markov chain Monte Carlo (MCMC) methods. multimark can also be used for Bayesian analyses of conventional capture–recapture data consisting of a single‐mark type. Some package features include (1) general model specification using formulas already familiar to most R users, (2) ability to include temporal, behavioral, age, cohort, and individual heterogeneity effects in detection and survival probabilities, (3) improved MCMC algorithm that is computationally faster and more efficient than previously proposed methods, (4) Bayesian multimodel inference using reversible jump MCMC, and (5) data simulation capabilities for power analyses and assessing model performance. I demonstrate use of multimark using left‐ and right‐sided encounter histories for bobcats (Lynx rufus) collected from remote single‐camera stations in southern California. In this example, there is evidence of a behavioral effect (i.e., trap “happy” response) that is otherwise indiscernible using conventional single‐sided analyses. The package will be most useful to ecologists seeking stronger inferences by combining different sources of mark–recapture data that are difficult (or impossible) to reliably reconcile, particularly with the sparse datasets typical of rare or elusive species for which noninvasive sampling techniques are most commonly employed. Addressing deficiencies in currently available software, multimark also provides a user‐friendly interface for performing Bayesian multimodel inference using capture–recapture data consisting of a single conventional mark or multiple noninvasive marks.

Harlequin frogs (Bufonidae: Atelopus ) are a species-rich genus of Neotropical toads that have experienced disproportionately severe population declines and extinctions caused by the amphibian chytrid fungus Batrachochytrium dendrobatidis ( Bd ). The genus Atelopus is of high conservation concern, but relatively little is known about the population dynamics and life history of the majority of species. We examined the demography of one population of Atelopus zeteki and two populations of A. varius in central Panama using three to six years of mark-recapture data collected prior to and during an outbreak of Bd. We estimated male survival probabilities prior to the arrival of Bd and sex-specific population sizes for these three populations using state-space Bayesian population models. Prior to the arrival of Bd , monthly apparent survival probabilities were higher for A. varius males than for A. zeteki males, and recaptures among years were low in both species. Abundance of both species varied over time and declined rapidly after the arrival of Bd . Male densities were generally greater than female densities, though female densities were higher or equivalent to males after the arrival of Bd . Estimates of survival and abundance over time may be explained by differences in the use of stream habitat by the two sexes and three populations, both during and between breeding seasons. These estimates provide key baseline population information that can be used to inform reintroductions from captive assurance colonies and studies of extant Atelopus populations as part of conservation and management programs.