63 results on '"Yongxiang SONG"'
Search Results
2. Design and Optimization of a 3D Printed Distal Flexible Joint for Endoscopic Surgery
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Yongxiang Song, Shuxin Wang, Xiangyu Luo, and Chaoyang Shi
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- 2022
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3. Lynamicin B is a Potential Pesticide by Acting as a Lepidoptera-Exclusive Chitinase Inhibitor
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Qiong Lu, Yongxiang Song, Liping Xu, Jianhua Ju, Tian Liu, Qing Yang, Yong Zhou, and Lin Liu
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Insecticides ,biology ,media_common.quotation_subject ,Chitinases ,General Chemistry ,Insect ,Moths ,Pesticide ,Spodoptera ,biology.organism_classification ,Indole Alkaloids ,Microbiology ,Lepidoptera genitalia ,Mythimna separata ,Chitinase ,biology.protein ,Animals ,PEST analysis ,General Agricultural and Biological Sciences ,Ostrinia furnacalis ,media_common - Abstract
Insect group h chitinase is a promising target for designing non-target safe pesticides in that it is exclusively distributed in lepidopteran insects, over 80% of which are agricultural pests. In this work, lynamicin B was discovered to be an inhibitor of OfChi-h, the group h chitinase from the lepidopteran pest Ostrinia furnacalis. Lynamicin B was revealed to competitively inhibit OfChi-h with a Ki value of 8.76 μM and does not significantly inhibit other chitinases. The co-crystal structure of lynamicin B and OfChi-h revealed that the dichloroindolyl group of lynamicin B occupies an unexplored pocket below subsites +1 and +2 of the substrate-binding cleft, which is vital for its selectivity. Feeding experiments demonstrated that lynamicin B exhibited high insecticidal activities against other lepidopteran pests Mythimna separata and Spodoptera frugiperda besides O. furnacalis. Moreover, lynamicin B did not affect Trichogramma ostriniae, a natural enemy of O. furnacalis. This study provides a natural-derived potent pesticide for the control of lepidopteran pests, leaving its natural enemy unaffected.
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- 2021
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4. Cyclin B1 expression as an independent prognostic factor for lung adenocarcinoma and its potential pathways
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Yi, Li, Yuanxiu, Leng, Yudi, Dong, Yongxiang, Song, Qiaoyuan, Wu, Ni, Jiang, Hui, Dong, Fang, Chen, Qing, Luo, and Chen, Cheng
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Cancer Research ,Oncology - Abstract
Although great progress has been made in the early diagnosis and targeted therapy of lung adenocarcinoma (LUAD), the survival of patients with LUAD remains unsatisfactory. There is an urgent requirement for new biomarkers to guide the diagnosis, prognosis and treatment of LUAD. Following an initial bioinformatics screen, the present study focused on cyclin B1 (CCNB1) in LUAD. A total of 94 patients with LUAD from a single hospital were included in the study. CCNB1 protein expression was detected and scored in 94 LUAD samples and 30 normal tissue samples by immunohistochemistry. The associations between CCNB1 expression and the clinicopathological features of the patients with LUAD were analyzed. Furthermore, the relationship between prognosis and the CCNB1 expression level was analyzed using Cox regression and survival analyses. Weighted gene co-expression network analysis and RNA-sequencing were also applied to identify the potential molecular mechanisms of CCNB1 in LUAD. CCNB1 was highly expressed in patients with LUAD and was associated with poor prognosis. It may affect the expression of CPLX1, PPIF, SRPK2, KRT8, SLC20A1 and CBX2 genes and function via different pathways. CCNB1 has the potential to become a novel prognostic target for LUAD.
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- 2022
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5. Acidic microenvironment enhances MT1-MMP-mediated cancer cell motility through integrin β1/cofilin/F-actin axis
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Yongxiang Song, Ran Sui, Lubiao Liang, and Yajin Zhao
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Lung Neoplasms ,Integrin ,Biophysics ,Motility ,Models, Biological ,Biochemistry ,Cell Movement ,Tumor Microenvironment ,Extracellular ,Humans ,Cytoskeleton ,Actin ,Tumor microenvironment ,biology ,Chemistry ,Integrin beta1 ,General Medicine ,Hydrogen-Ion Concentration ,Cofilin ,Actins ,Extracellular Matrix ,Cell biology ,Gene Expression Regulation, Neoplastic ,Actin Cytoskeleton ,Actin Depolymerizing Factors ,A549 Cells ,biology.protein ,Matrix Metalloproteinase 1 ,Intracellular ,Signal Transduction - Abstract
Tumor acidic microenvironment is the main feature of many solid tumors. As a part of the tumor microenvironment, it has a profound impact on the occurrence and development of tumors. However, the research on how tumor cells sense the changes of the external microenvironment and how the intracellular subcellular structures transmit the signals from extracellular to intracellular is unclear. In this study, we identify that the acidic microenvironment enhances cancer cell motility, and the expression of membrane-anchored membrane type 1-matrix metalloproteinase is also associated with cell motility, which indicates more degradation of the ECM under the acidic microenvironment. Moreover, the expression of cofilin is low in the acidic microenvironment, and the F-actin filaments are distributed more along the cells. The cytoskeletal F-actin changes are consistent with the potential of a high-invasive phenotype. Further study reveals the upstream control of the signal transductions from extracellular to intracellular, that is, the integrin β1 functions to trigger the biological responses under the acidic microenvironment. Our results demonstrate that the acidic microenvironment enhances cancer cell motility through the integrin β1/cofilin/F-actin signal axis. This study clearly shows the scheme of the signal transmissions from extracellular to intracellular and further reveals the cytoskeletal roles for the contributions of cancer cell motility under acidic microenvironment, which provides new targets for cancer intervention from the biochemical and biophysical perspectives.
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- 2021
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6. Exosome-mediated lnc-ABCA12-3 promotes proliferation and glycolysis but inhibits apoptosis by regulating the toll-like receptor 4/nuclear factor kappa-B signaling pathway in esophageal squamous cell carcinoma
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Junliang Ma, Yijun Luo, Yingjie Liu, Cheng Chen, Anping Chen, Lubiao Liang, Wenxiang Wang, and Yongxiang Song
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Pharmacology ,Physiology - Abstract
Esophageal squamous cell carcinoma (ESCC) is a kind of malignant tumor with high incidence and mortality in the digestive system. The aim of this study is to explore the function of lnc-ABCA12-3 in the development of ESCC and its unique mechanisms. RT-PCR was applied to detect gene transcription levels in tissues or cell lines like TE-1, EC9706, and HEEC cells. Western blot was conducted to identify protein expression levels of mitochondrial apoptosis and toll-like receptor 4 (TLR4)/nuclear factor kappa-B (NF-κB) signaling pathway. CCK-8 and EdU assays were carried out to measure cell proliferation, and cell apoptosis was examined by flow cytometry. ELISA was used for checking the changes in glycolysis-related indicators. Lnc-ABCA12-3 was highly expressed in ESCC tissues and cells, which preferred it to be a candidate target. The TE-1 and EC9706 cells proliferation and glycolysis were obviously inhibited with the downregulation of lnc-ABCA12-3, while apoptosis was promoted. TLR4 activator could largely reverse the apoptosis acceleration and relieved the proliferation and glycolysis suppression caused by lnc-ABCA12-3 downregulation. Moreover, the effect of lnc-ABCA12-3 on ESCC cells was actualized by activating the TLR4/NF-κB signaling pathway under the mediation of exosome. Taken together, the lnc-ABCA12-3 could promote the proliferation and glycolysis of ESCC, while repressing its apoptosis probably by regulating the TLR4/NF-κB signaling pathway under the mediation of exosome.
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- 2022
7. Characterization of fatty acid metabolism-related lncRNAs in lung adenocarcinoma identifying potential novel prognostic targets
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Yang Liu, Xingshu Zhang, Xuechao Cheng, Qian Luo, Mingyang Yu, Kaijun Long, Wendong Qu, Yang Tang, Ming Gong, Lubiao Liang, Xixian Ke, and Yongxiang Song
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Genetics ,Molecular Medicine ,Genetics (clinical) - Abstract
Lung adenocarcinoma (LUAD), a malignant respiratory tumor with an extremely poor prognosis, has troubled the medical community all over the world. According to recent studies, fatty acid metabolism (FAM) and long non-coding RNAs (lncRNAs) regulation have shown exciting results in tumor therapy. In this study, the original LUAD patient data was obtained from the TCGA database, and 12 FAM-related lncRNAs (AL390755.1, AC105020.6, TMPO-AS1, AC016737.2, AC127070.2, LINC01281, AL589986.2, GAS6-DT, AC078993.1, LINC02198, AC007032.1, and AL021026.1) that were highly related to the progression of LUAD were finally identified through bioinformatics analysis, and a risk score model for clinical reference was constructed. The window explores the immunology and molecular mechanism of LUAD, aiming to shed the hoping light on LUAD treatment.
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- 2022
8. Genome-Directed Discovery of Tetrahydroisoquinolines from Deep-Sea Derived Streptomyces niveus SCSIO 3406
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Mingzhe Li, Yongxiang Song, Jianhua Ju, Nai-Kei Wong, Jiafan Yang, Man-Cheng Tang, and Junwei Deng
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Chemistry ,THIQ ,Organic Chemistry ,medicine ,Streptomyces niveus ,Computational biology ,Deep sea ,Genome ,medicine.drug - Abstract
A genome-directed discovery strategy to identify new tetrahydroisoquinolines (THIQs) was applied to deep-sea derived Streptomyces niveus SCSIO 3406; 11 THIQs were found representing three THIQ clas...
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- 2021
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9. Chest wall trauma leading to a metallic foreign body in the right subclavian vein: a case report
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Cheng Chen, Qingyong Cai, Kurt Ruetzler, Gang Xu, Yongxiang Song, Anping Chen, and Robert E. Merritt
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iMDT Corner ,Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Metallic foreign body ,Right subclavian vein ,business.industry ,Medicine ,business ,Surgery - Published
- 2021
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10. Development of the CRISPR-Cas9 System for the Marine-Derived Fungi
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Yingying, Chen, Cunlei, Cai, Jiafan, Yang, Junjie, Shi, Yongxiang, Song, Dan, Hu, Junying, Ma, and Jianhua, Ju
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Marine-derived fungi are emerging as attractive producers of structurally novel secondary metabolites with diverse bioactivities. However, the lack of efficient genetic tools limits the discovery of novel compounds and the elucidation of biosynthesis mechanisms. Here, we firstly established an effective PEG-mediated chemical transformation system for protoplasts in two marine-derived fungi
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- 2022
11. Secondary Metabolites and Biosynthetic Gene Clusters Analysis of Deep-Sea Hydrothermal Vent-Derived
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Huaran, Zhang, Yingying, Chen, Yanqing, Li, Yongxiang, Song, Junying, Ma, and Jianhua, Ju
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Hydrothermal Vents ,Multigene Family ,Secondary Metabolism ,Streptomyces ,Biosynthetic Pathways - Published
- 2022
12. Chlorinated bis-indole alkaloids from deep-sea derived Streptomyces sp. SCSIO 11791 with antibacterial and cytotoxic activities
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Jianchen Yu, Jiafan Yang, Yongxiang Song, Jie Li, Jianhua Ju, Jie Yuan, and Nai-Kei Wong
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0301 basic medicine ,Aquatic Organisms ,Swine ,Stereochemistry ,030106 microbiology ,Microbial Sensitivity Tests ,medicine.disease_cause ,01 natural sciences ,Streptomyces ,Cell Line ,Indole Alkaloids ,03 medical and health sciences ,Cell Line, Tumor ,Drug Discovery ,medicine ,Animals ,Humans ,Cytotoxic T cell ,IC50 ,Pharmacology ,biology ,Cytotoxins ,010405 organic chemistry ,Chemistry ,Alkaloid ,Hep G2 Cells ,HCT116 Cells ,biology.organism_classification ,In vitro ,0104 chemical sciences ,Staphylococcus aureus ,Cell culture ,Two-dimensional nuclear magnetic resonance spectroscopy - Abstract
Two new chlorinated bis-indole alkaloids, dionemycin (1) and 6-OMe-7',7″-dichorochromopyrrolic acid (2), along with seven known analogs 3-9, were isolated from the deep-sea derived Streptomyces sp. SCSIO 11791. Their structures were elucidated by extensive HRESIMS, and 1D and 2D NMR data analysis. In vitro antibacterial and cytotoxic assays revealed that, compound 1, shows anti-staphylococcal activity with an MIC range of 1-2 μg/mL against six clinic strains of methicillin-resistant Staphylococcus aureus (MRSA) isolated from human and pig. Additionally, compound 1 displayed cytotoxic activity against human cancer cell lines NCI-H460, MDA-MB-231, HCT-116, HepG2, and noncancerous MCF10A with an IC50 range of 3.1-11.2 μM. Analysis of the structure-activity relationship reveals that the chlorine atom at C-6″ could be pivotal for conferring their bioactivities, thus providing hints on chemical modifications on bis-indole alkaloid scaffold in drug design.
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- 2020
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13. A Luciferase-Like Monooxygenase and Flavin Reductase Pair AbmE2/AbmZ Catalyzes Baeyer–Villiger Oxidation in Neoabyssomicin Biosynthesis
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Qinglian Li, Jiajia Tu, Chunyan Zhang, Yongxiang Song, Xiaoqi Ji, Jianhua Ju, and Liyan Wang
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chemistry.chemical_classification ,General Chemistry ,Monooxygenase ,Catalysis ,Baeyer–Villiger oxidation ,Complementation ,chemistry.chemical_compound ,Enzyme ,Biosynthesis ,chemistry ,Biochemistry ,Flavin reductase ,Luciferase ,Gene - Abstract
Baeyer–Villiger monooxygenases (BVMOs) play important roles in the biosynthesis of natural products. We describe here in vivo gene inactivation/complementation studies as well as in vitro enzyme as...
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- 2020
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14. Anti-Pathogenic Depsidones and its Derivatives from a Coral-Derived Fungus Aspergillus Sp. Scsio Sx7s7
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Jiafan Yang, Le Zhou, Zhenbin Zhou, Yongxiang Song, and Jianhua Ju
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Biochemistry ,Ecology, Evolution, Behavior and Systematics - Published
- 2022
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15. Anti-Pathogenic Depsidones and its Derivatives from a Coral-Derived Fungus Aspergillus Unguis Scsio Sx7s7
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Jiafan Yang, Le Zhou, Zhenbin Zhou, Yongxiang Song, and Jianhua Ju
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History ,Polymers and Plastics ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2022
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16. Deep Learning for Prediction of N2 Metastasis and Survival for Clinical Stage I Non-Small Cell Lung Cancer
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Yin Wang, Jingyun Shi, Haoyu Qi, Dong Xie, Jiajun Deng, Shouyu Chen, Chunyan Wu, Yifan Zhong, Minglei Yang, Tingting Wang, Yunlang She, Yongxiang Song, Chang Chen, and Minjie Ma
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Oncology ,Male ,medicine.medical_specialty ,Stage I Non-Small Cell Lung Cancer ,Lung Neoplasms ,N2 disease ,Risk Assessment ,Metastasis ,Cohort Studies ,Deep Learning ,Predictive Value of Tests ,Internal medicine ,Carcinoma, Non-Small-Cell Lung ,medicine ,Biomarkers, Tumor ,Humans ,Radiology, Nuclear Medicine and imaging ,In patient ,Prospective Studies ,Neoplasm Staging ,Retrospective Studies ,business.industry ,Reproducibility of Results ,Neoplasms, Second Primary ,Middle Aged ,medicine.disease ,Prognosis ,Survival Analysis ,Female ,Non small cell ,business - Abstract
Background Preoperative mediastinal staging is crucial for the optimal management of clinical stage I non-small cell lung cancer (NSCLC). Purpose To develop a deep learning signature for N2 metastasis prediction and prognosis stratification in clinical stage I NSCLC. Materials and Methods In this retrospective study conducted from May 2020 to October 2020 in a population with clinical stage I NSCLC, an internal cohort was adopted to establish a deep learning signature. Subsequently, the predictive efficacy and biologic basis of the proposed signature were investigated in an external cohort. A multicenter diagnostic trial (registration number: ChiCTR2000041310) was also performed to evaluate its clinical utility. Finally, on the basis of the N2 risk scores, the instructive significance of the signature in prognostic stratification was explored. The diagnostic efficiency was quantified with the area under the receiver operating characteristic curve (AUC), and the survival outcomes were assessed using the Cox proportional hazards model. Results A total of 3096 patients (mean age ± standard deviation, 60 years ± 9; 1703 men) were included in the study. The proposed signature achieved AUCs of 0.82, 0.81, and 0.81 in an internal test set (
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- 2021
17. The role of exosomal miR-181b in the crosstalk between NSCLC cells and tumor-associated macrophages
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Junliang Ma, Shaolin Chen, Yingjie Liu, Hao Han, Ming Gong, and Yongxiang Song
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MicroRNAs ,Lung Neoplasms ,Cell Movement ,Carcinoma, Non-Small-Cell Lung ,Culture Media, Conditioned ,Tumor-Associated Macrophages ,Genetics ,Tumor Microenvironment ,Humans ,Tetradecanoylphorbol Acetate ,Molecular Biology ,Biochemistry ,Signal Transduction - Abstract
It has been reported that tumor-associated macrophages (TAMs) participate in modulating the progression of cancer in the tumor microenvironment. However, the crosstalk between TAMs and non-small cell lung cancer (NSCLC) is still unclear.We investigated whether NSCLC-derived exosomes could affect TAMs, which feedback modulated progression of NSCLC.MiR-181b expression was measured by RT-PCR. Human THP-1 monocyte was differentiated into macrophages with phorbol myristate acetate, which were further identified by transmission electron microscopy and western blot. Macrophage M1 and M2 polarizations were detected by flow cytometry, RT-PCR and western blot. Proliferation, migration, and invasion of NSCLC cells treated with conditioned mediums were detected by EdU and Transwell assays.We demonstrated that miR-181b was up-regulated in exosomes derived from NSCLC patients' serum and NSCLC cells. MiR-181b could be transferred to macrophages via exosomes in the co-culture system of macrophages and NSCLC cells, which promoted macrophage M2 polarization. Further examinations revealed that exosomes derived from NSCLC cells could enhanced macrophage M2 polarizations by regulating miR-181b/JAK2/STAT3 axis, and silencing miR-181b in NSCLC cells and JAK2 inhibitor used in macrophages could reverse the effects. Importantly, the conditioned medium of macrophages treated with NSCLC cell-derived exosomes could promote NSCLC cell proliferation, migration, and invasion. Silencing miR-181b in NSCLC cells and JAK2 inhibitor used in macrophages could block the effects.All of these results indicated that exosomal miR-181b participated in the crosstalk between NSCLC cells and TAMs, providing potential therapeutic targets for NSCLC.
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- 2021
18. Diagnosis and treatment of pericardial mesothelioma by mediastinal mass resection: a case report
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Lubiao Liang, Xiao Zhang, Xixian Ke, Yongxiang Song, Luka Brcic, Joel W. Neal, Gang Xu, and Cheng Chen
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General Medicine - Published
- 2022
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19. Occult Nodal Metastasis Defined by PET-CT Identifies a Unique Clinical Subtype of Lung Cancer: A Retrospective Multicenter Study
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Jiajun Deng, Tingting Wang, Yifan Zhong, Minjie Ma, Yunlang She, Yongxiang Song, Chang Chen, and Minglei Yang
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PET-CT ,medicine.medical_specialty ,Multicenter study ,business.industry ,Nodal metastasis ,medicine ,Radiology ,Lung cancer ,medicine.disease ,business ,Occult - Abstract
PurposeTo investigate the surgical prognosis and efficacy of adjuvant therapy in non-small cell lung cancer (NSCLC) with occult lymph node metastasis (ONM) defined by positron emission tomography-computed tomography (PET-CT).MethodsA total of 3537 NSCLC patients receiving surgical resection were included in this study. The prognosis between patients with ONM and evident nodal metastasis, ONM patients with and without adjuvant therapy were compared, respectively.ResultsONM was associated with significantly better prognosis than evident nodal metastasis whether for patients with N1 (5-year OS: 56.8% versus 52.3%, adjusted p value=0.267; 5-year RFS: 44.7% versus 33.2%, adjusted p value=0.031) or N2 metastasis (5-year OS: 42.8% versus 32.3%, adjusted p value=0.010; 5-year RFS: 31.3% versus 21.6%, adjusted p value=0.025). In ONM population, patients receiving adjuvant therapy yielded better prognosis comparing to those without adjuvant therapy (5-year OS: 50.1% versus 33.5%, adjusted p value
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- 2021
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20. Test System Upgrade for ITER Current Lead Series Production at ASIPP
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Qingqing Du, Yongxiang Song, Kathy Lu, J. Y. Wang, Y. Dong, E. Niu, C. Liu, Kaizhong Ding, and P. Bauer
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Nuclear and High Energy Physics ,Engineering ,Thermonuclear fusion ,Piping ,business.industry ,Nuclear engineering ,Series production ,Condensed Matter Physics ,Chinese academy of sciences ,Test (assessment) ,Upgrade ,Lead (electronics) ,business ,Voltage - Abstract
The Institute of Plasma Physics, Chinese Academy of Sciences (ASIPP), is in charge of the manufacturing and testing of the 60 high-temperature superconducting current lead series to be completed at the end of 2020 for the International Thermonuclear Experimental Reactor (ITER). This paper first summarizes the testing items and testing results of the ITER lead prototypes in 2015/2016, then, based on the prototypes experiences, discuss the final test piping and instrument diagram for the ITER lead series production testing. A new 5-K test platform to expedite the series testing is also introduced, and a new feature, the 30-kV high-voltage (HV) class insulation for the cryogenic temperature and voltage measurements to allow in situ HV testing, is introduced. The detailed test procedures and test items for the series are discussed finally.
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- 2019
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21. Genome-Directed Discovery of Tetrahydroisoquinolines from Deep-Sea Derived
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Jiafan, Yang, Yongxiang, Song, Man-Cheng, Tang, Mingzhe, Li, Junwei, Deng, Nai-Kei, Wong, and Jianhua, Ju
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Biological Products ,Molecular Structure ,Tetrahydroisoquinolines ,Streptomyces - Abstract
A genome-directed discovery strategy to identify new tetrahydroisoquinolines (THIQs) was applied to deep-sea derived
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- 2021
22. A machine learning-based prediction of the micropapillary/solid growth pattern in invasive lung adenocarcinoma with radiomics
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Ulas Bagci, Dong Xie, Likun Hou, Yongxiang Song, Bingxi He, Chang Chen, Lei Zhang, Minglei Yang, Chunyan Wu, Yunlang She, Tingting Wang, Lili Wang, Tayab C. Waseem, and Benson A. Babu
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Receiver operating characteristic ,business.industry ,Area under the curve ,medicine.disease ,Machine learning ,computer.software_genre ,Confidence interval ,Random forest ,Support vector machine ,Naive Bayes classifier ,Oncology ,medicine ,Adenocarcinoma ,Original Article ,Artificial intelligence ,Lung cancer ,business ,computer - Abstract
Background Micropapillary/solid (MP/S) growth patterns of lung adenocarcinoma are vital for making clinical decisions regarding surgical intervention. This study aimed to predict the presence of a MP/S component in lung adenocarcinoma using radiomics analysis. Methods Between January 2011 and December 2013, patients undergoing curative invasive lung adenocarcinoma resection were included. Using the "PyRadiomics" package, we extracted 90 radiomics features from the preoperative computed tomography (CT) images. Subsequently, four prediction models were built by utilizing conventional machine learning approaches fitting into radiomics analysis: a generalized linear model (GLM), Naive Bayes, support vector machine (SVM), and random forest classifiers. The models' accuracy was assessed using a receiver operating curve (ROC) analysis, and the models' stability was validated both internally and externally. Results A total of 268 patients were included as a primary cohort, and 36.6% (98/268) of them had lung adenocarcinoma with an MP/S component. Patients with an MP/S component had a higher rate of lymph node metastasis (18.4% versus 5.3%) and worse recurrence-free and overall survival. Five radiomics features were selected for model building, and in the internal validation, the four models achieved comparable performance of MP/S prediction in terms of area under the curve (AUC): GLM, 0.74 [95% confidence interval (CI): 0.65-0.83]; Naive Bayes, 0.75 (95% CI: 0.65-0.85); SVM, 0.73 (95% CI: 0.61-0.83); and random forest, 0.72 (95% CI: 0.63-0.81). External validation was performed using a test cohort with 193 patients, and the AUC values were 0.70, 0.72, 0.73, and 0.69 for Naive Bayes, SVM, random forest, and GLM, respectively. Conclusions Radiomics-based machine learning approach is a very strong tool for preoperatively predicting the presence of MP/S growth patterns in lung adenocarcinoma, and can help customize treatment and surveillance strategies.
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- 2021
23. Bilateral secondary pulmonary tuberculosis complicated with bilateral chylothorax: a case report
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Gang Xu, Jiebin Zuo, Qiao Li, Yang Tang, Wendong Qu, Cheng Chen, and Yongxiang Song
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Adult ,medicine.medical_specialty ,Pleural effusion ,medicine.medical_treatment ,Chylothorax ,Thoracic duct ,Thoracic Duct ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,030212 general & internal medicine ,Thoracotomy ,Lung ,Tuberculosis, Pulmonary ,Advanced and Specialized Nursing ,business.industry ,Emergency department ,medicine.disease ,Surgery ,Pleural Effusion ,Anesthesiology and Pain Medicine ,medicine.anatomical_structure ,Parenteral nutrition ,030228 respiratory system ,Cardiothoracic surgery ,Female ,business - Abstract
A 26-year-old female was admitted to the emergency department of thoracic surgery complaining of chest tightness, shortness of breath, and a history of bilateral tuberculosis. A chest Computed Tomography (CT) scan showed bilateral pleural effusion. After that, the patient was implanted with bilateral intercostal drainage tubes. Further analysis of the pleural effusion was conducted to confirm the diagnosis of bilateral chylothorax. We initiated conservative treatment consisting of fasting and total parenteral nutrition. After the failure of conservative treatment, the patient underwent ligation of the thoracic duct by right-sided thoracotomy combined with talc slurry. On the first day postoperatively, the right pleural effusion had decreased significantly, while the left pleural effusion had not. Subsequently, talc slurry was injected into the left thoracic drainage tube of the patient. Bilateral pleural effusion was significantly reduced. Re-examination chest X-ray showed the disappearance of pleural effusion, and the patient was discharged good healthy. Chest X-rays were reexamined one month postoperatively, and the patient's lung was well dilated, with no recurrence of pleural effusion. In this case, it was shown that conservative treatment is the first choice for chylothorax. However, if this proves to be ineffective, early surgical treatment should be considered. Early diagnosis and timely surgical intervention are the key factors to improve the prognosis of patients.
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- 2021
24. Evaluation of Clinical Value and Potential Mechanism of MTFR2 in Lung Adenocarcinoma via Bioinformatics
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Yongxiang Song, Wendong Qu, Qingyong Cai, Xu Han, Xixian Ke, Cheng Chen, Gang Xu, Jiebin Zuo, and Yang Tang
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0301 basic medicine ,Adult ,Male ,Lung adenocarcinoma ,Cancer Research ,Lung Neoplasms ,Bioinformatics ,Datasets as Topic ,Adenocarcinoma of Lung ,Kaplan-Meier Estimate ,Biology ,BUB1B ,Disease-Free Survival ,Mitochondrial Proteins ,03 medical and health sciences ,0302 clinical medicine ,Surgical oncology ,Genetics ,medicine ,Biomarkers, Tumor ,Humans ,KEGG ,Lung ,Survival analysis ,RC254-282 ,Aged ,Neoplasm Staging ,Aged, 80 and over ,Cyclin-dependent kinase 1 ,MTFR2 ,Research ,Gene Expression Profiling ,Computational Biology ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Biomarker ,Cell cycle ,Middle Aged ,medicine.disease ,Prognosis ,Up-Regulation ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Adenocarcinoma ,Biomarker (medicine) ,Female ,Neoplasm Recurrence, Local - Abstract
Background Mitochondrial fission regulator 2 (MTFR2) was involved in the progression and development of various cancers. However, the relationship between MTFR2 with lung adenocarcinoma (LUAD) had not been reported. Herein, this study analyzed the clinical significance and potential mechanisms of MTFR2 in LUAD via bioinformatics tools. Results We found that the level of MTFR2 was increased, and correlated with sex, age, smoking history, neoplasm staging, histological subtype and TP53 mutation status in LUAD patients. Kaplan-Meier survival analysis showed LUAD patients with increased MTFR2 had a poor prognosis. In addition, univariate COX regression analysis showed neoplasm staging, T stage, distant metastasis and MTFR2 level were risk factors for the prognosis of LUAD. A total of 1127 genes were coexpressed with MTFR2, including 840 positive and 208 negative related genes. KEGG and GSEA found that MTFR2 participated in the progression of LUAD by affecting cell cycle, DNA replication, homologous recombination, p53 signaling pathway and other mechanisms. The top 10 coexpressed genes, namely CDK1, CDC20, CCNB1, PLK1, CCNA2, AURKB, CCNB2, BUB1B, MAD2L1 and BUB1 were highly expressed, and were associated with poor prognosis in LUAD. Conclusions Consequently, we elucidated MTFR2 was a biomarker for diagnosis and poor prognosis in LUAD, and might participate in the progression of LUAD via affecting cell cycle, DNA replication, homologous recombination and p53 signaling pathway.
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- 2021
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25. Thoracic endometriosis: a case report and review of the literature
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Yongxiang Song, Kui Zhai, Xixian Ke, Wendong Qu, Jiebin Zuo, Yang Tang, and Cheng Chen
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medicine.medical_specialty ,Hemoptysis ,Endometriosis ,03 medical and health sciences ,Thoracic endometriosis ,0302 clinical medicine ,Pharmacotherapy ,Bronchoscopy ,medicine ,Humans ,Advanced and Specialized Nursing ,medicine.diagnostic_test ,business.industry ,Pneumothorax ,Magnetic resonance imaging ,medicine.disease ,Hemothorax ,Magnetic Resonance Imaging ,Diaphragm (structural system) ,Anesthesiology and Pain Medicine ,030220 oncology & carcinogenesis ,030211 gastroenterology & hepatology ,Female ,Radiology ,business ,Tomography, X-Ray Computed - Abstract
Thoracic endometriosis is characterized by the presence of normal functioning endometrial tissues in normal pleural, diaphragm, or lung parenchyma, and main clinical symptoms include pneumothorax, menstrual hemothorax, menstrual hemoptysis, and pulmonary nodules. Chest X-ray (CXR), computed tomography (CT), magnetic resonance imaging (MRI), bronchoscopy, and surgical biopsy could be applied to the diagnosis of TE. Both drug therapy and surgical treatment were widely used to treat this disease, but no theory was used to guide the choice of treatment options. This paper introduces a case of menstrual hemoptysis due to endometriosis, and the final surgical treatment was chosen. The patient recovered well postoperatively and reported no hemoptysis during 2 months of follow-up. Reexamination of the chest through CT showed no ground-glass lesions or pulmonary exudative lesions. We make the following recommendations for patient selection when considering a surgical approach to the treatment of TE. Patients for whom surgery should be considered are those who (I) do not respond to drug therapy or relapse once drug therapy is withdrawn, (II) cannot tolerate drug therapy or who may wish to get pregnant in the near future (III) have limited lesions which are able to be completely removed during surgery. Patients in whom surgery is not recommended include those who have extensive lesions which cannot be surgically removed, including those with diaphragm or pleural involvement as the diseased tissues must be completely removed to avoid recurrence, and those who are unfit for surgery.
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- 2021
26. Secondary Metabolites and Biosynthetic Gene Clusters Analysis of Deep-Sea Hydrothermal Vent-Derived Streptomyces sp. SCSIO ZS0520
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Huaran Zhang, Yingying Chen, Yanqing Li, Yongxiang Song, Junying Ma, and Jianhua Ju
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Drug Discovery ,Pharmaceutical Science ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,polyketide ,biosynthesis ,Streptomyces ,hydrothermal vent ,deep sea - Abstract
Streptomyces sp. SCSIO ZS0520 is a deep-sea hydrothermal vent-derived actinomycete. Our previous metabolism investigation showed that Streptomyces sp. SCSIO ZS0520 is a producer of cytotoxic actinopyrones. Here, another four types of secondary metabolites were identified, including six salinomycin isomers (2–7), the macrolide elaiophylin (8), the triterpene N-acetyl-aminobacteriohopanetriol (9), and the pyrone minipyrone (10). Among them, compounds 2–6 and 10 are new compounds. To understand the biosynthetic pathway of these compounds, a bioinformatic analysis of the whole genome was carried out, which identified 34 secondary metabolite biosynthetic gene clusters. Next, the biosynthetic pathways responsive to four types of products were deduced on the basis of gene function predictions and structure information. Taken together, these findings prove the metabolite potential of ZS0520 and lay the foundations to solve the remaining biosynthetic issues in four types of marine natural products.
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- 2022
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27. Complete genome sequence of the deep South China Sea-derived Streptomyces niveus SCSIO 3406, the producer of cytotoxic and antibacterial marfuraquinocins
- Author
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Yongxiang Song, Qinghua Zhu, Qinglian Li, Qing He, Cheng Weige, and Jianhua Ju
- Subjects
Streptomyces niveus ,Pathology and Laboratory Medicine ,Genome ,Biochemistry ,Nucleic Acids ,Gene cluster ,Medicine and Health Sciences ,chemistry.chemical_classification ,Fungal Pathogens ,0303 health sciences ,Multidisciplinary ,biology ,Organic Compounds ,Genomics ,Streptomyces ,Anti-Bacterial Agents ,Chemistry ,Medical Microbiology ,Physical Sciences ,Medicine ,Carbohydrate Metabolism ,Pathogens ,Research Article ,China ,Science ,Mycology ,Biosynthesis ,Microbiology ,03 medical and health sciences ,Farnesyl diphosphate synthase ,Bacterial Proteins ,Nonribosomal peptide ,Genetics ,Gene ,Microbial Pathogens ,030304 developmental biology ,Whole genome sequencing ,CRISPRs ,030306 microbiology ,Terpenes ,Organic Chemistry ,Chemical Compounds ,Biology and Life Sciences ,Repeated sequences ,Biological Transport ,DNA ,biology.organism_classification ,Metabolism ,chemistry ,Genes, Bacterial ,biology.protein ,Phenazines ,Naphthoquinones - Abstract
Streptomyces niveus SCSIO 3406 was isolated from a sediment sample collected from South China Sea at a depth of 3536 m. Four new sesquiterpenoid naphthoquinones, marfuraquinocins A-D, and two new geranylated phenazines, i. e. phenaziterpenes A and B, were isolated from the fermentation broth of the strain. Here, we present its genome sequence, which contains 7,990,492 bp with a G+C content of 70.46% and harbors 7088 protein-encoding genes. The genome sequence analysis revealed the presence of a 28,787 bp gene cluster encoding for 24 open reading frames including 1,3,6,8-tetrahydroxynaphthalene synthase and monooxygenase, seven phenazine biosynthesis proteins, two prenyltransferases and a squalene-hopene cyclase. These genes are known to be necessary for the biosynthesis of both marfuraquinocins and phenaziterpenes. Outside the gene cluster (and scattered around the genome), there are seven genes belonging to the methylerythritol phosphate pathway for the biosynthesis of the essential primary metabolite, isopentenyl diphosphate, as well as six geranyl diphosphate/farnesyl diphosphate synthase genes. The strain S. niveus SCSIO 3406 showed type I PKS, type III PKS and nonribosomal peptide synthetase cluster. The sequence will provide the genetic basis for better understanding of biosynthesis mechanism of the above mentioned six compounds and for the construction of improved strain for the industrial production of antimicrobial agents.
- Published
- 2020
28. Upgrade of Cooling Channels for Four-Strap ICRF Antenna of EAST
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Xueyang Zhang, Weiguo Song, Qingxi Yang, Jin Xing Zheng, Yongxiang Song, Chengming Qin, and Yuanzhe Zhao
- Subjects
010302 applied physics ,Coupling ,Nuclear and High Energy Physics ,Tokamak ,Materials science ,Nuclear engineering ,Cyclotron ,Plasma ,Condensed Matter Physics ,01 natural sciences ,010305 fluids & plasmas ,law.invention ,Power (physics) ,Physics::Plasma Physics ,law ,0103 physical sciences ,Radio frequency ,Vertical displacement ,Antenna (radio) ,Computer Science::Information Theory - Abstract
In order to meet the heating requirement of EAST tokamak, ion cyclotron range of frequency (ICRF) heating is utilized as one of the main auxiliary heating methods, which plays an important role in coupling radio frequency (RF) power into the plasma. As a member of plasma facing components, ICRF antenna suffers the plasma radiation as well which is one of the causes of the thermal load on the antenna. Plasma radiation and RF thermal load during the operation of ICRF and thermal load caused by HALO current during vertical displacement event will contribute together to a huge thermal load on the surface of the antenna and consequently the structural stability and reliability of ICRF antenna will be affected. Therefore, cooling channels is needed to remove heat on the ICRF antenna. In this paper, cooling channels for straps of ICRF antenna are designed based on the thermal load on the antenna, and thermal-structural analysis of straps with cooling channels is also carried out by the finite-element method.
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- 2018
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29. Video of surgical resection of tumor
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Wendong Qu, Yating Wei, Cheng Chen, Yang Liu, Xixian Ke, Qian Luo, and Yongxiang Song
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Surgical resection ,medicine.medical_specialty ,Materials Chemistry ,medicine ,Surgery - Published
- 2021
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30. Neoabyssomicins A–C, polycyclic macrolactones from the deep-sea derived Streptomyces koyangensis SCSIO 5802
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Hao Liang, Yongxiang Song, Xiaoyi Wei, Jianhua Ju, Fengxiang Qin, Mingwei Shao, Nai-Kei Wong, Qinglian Li, Yun Zhang, Li Ye, and Changli Sun
- Subjects
chemistry.chemical_classification ,Human lymphocyte ,010405 organic chemistry ,Chemistry ,Stereochemistry ,Organic Chemistry ,Streptomyces koyangensis ,010402 general chemistry ,Ring (chemistry) ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,Viral replication ,Drug Discovery ,Antibacterial activity ,Lactone - Abstract
Neoabyssomicin A (1) possessing a caged 6/6/6 ring system fused with two additional 6/9 lactone rings, neoabyssomicin B (2) featuring a 12-membered macrolactone ring and its seco-form, neoabyssomicin C (3), along with the known abyssomicin 2 (4) and 4 (5), were discovered from the deep-sea derived Streptomyces koyangensis SCSIO 5802. The structures of 1–3 were elucidated on the basis of MS, NMR spectroscopic and X-ray diffraction data analyses. A plausible biogenetic relationship of 1–5 is proposed. Additionally, compound 4 shows antibacterial activities against a panel of Gram-positive pathogens, including clinical MRSA strains, with MICs of 3–15 μg/mL; compounds 1 and 3 also were found to augment HIV-1 virus replication in a human lymphocyte model.
- Published
- 2017
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31. Deciphering the sugar biosynthetic pathway and tailoring steps of nucleoside antibiotic A201A unveils a GDP- <scp>l</scp> -galactose mutase
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Yongxiang Song, Hongbo Huang, Qinglian Li, Jianhua Ju, Jun Li, Qi Chen, Qinghua Zhu, and Junying Ma
- Subjects
0301 basic medicine ,Stereochemistry ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Mutase ,Bacterial Proteins ,Biosynthesis ,Glycosyltransferase ,Intramolecular Transferases ,chemistry.chemical_classification ,Multidisciplinary ,Natural product ,biology ,010405 organic chemistry ,GalP ,Biological Sciences ,Furanose ,0104 chemical sciences ,Actinobacteria ,Aminoglycosides ,030104 developmental biology ,chemistry ,Biochemistry ,Galactose ,Guanosine Diphosphate Sugars ,biology.protein ,Nucleoside - Abstract
Significance l -galactofuranose ( l -Gal f ), the furanose form of l -galactose, is rare in nature yet plays a central role in secondary metabolite structures with medicinal potential. Importantly, the biosynthetic enzymes and mechanisms driving l -Gal f biosynthesis have eluded characterization. We report here a previously unknown mutase, MtdL, that generates GDP- l -Gal f from its galactopyranose analog GDP- l -Gal p using unique chemistry. MtdL mediates the pyranose–furanose conversion solely by the presence of bivalent cation. The ubiquitous nature of this Gal p → Gal f chemistry is suggested by numerous mutase homologs that are phylogenetically widespread in various phyla of Bacteria, Eukaryota, and Archaea. Thus, a genetic marker for l -Gal f -containing natural products and their producers has been discovered. Additionally, mutase homologs may constitute targets for antimicrobial drugs.
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- 2017
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32. Genome Mining of Alkaloidal Terpenoids from a Hybrid Terpene and Nonribosomal Peptide Biosynthetic Pathway
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Man-Cheng Tang, Nicholas Liu, Leibniz Hang, Mengbin Chen, Masao Ohashi, Christine T Y Chong, Ikechukwu C Okorafor, Yiu-Sun Hung, Thomas B. Kakule, Yi Tang, Zhuan Zhang, Yongxiang Song, Wei Cheng, Danielle A. Yee, and Yang Hai
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chemistry.chemical_classification ,Genome ,Terpenes ,General Chemistry ,010402 general chemistry ,Sesquiterpene ,01 natural sciences ,Biochemistry ,Catalysis ,Terpenoid ,Article ,0104 chemical sciences ,Terpene ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Enzyme ,Alkaloids ,chemistry ,Nonribosomal peptide ,Genome mining ,Heterologous expression ,Peptides ,Ribosomes - Abstract
Biosynthetic pathways containing multiple core enzymes have potential to produce structurally complex natural products. Here we mined a fungal gene cluster that contains two predicted terpene cyclases (TCs) and a nonribosomal peptide synthetase (NRPS). We showed the flv pathway produces flavunoidine 1, an alkaloidal terpenoid. The core of 1 is a tetracyclic, cage-like, and oxygenated sesquiterpene that is connected to dimethylcadaverine via a C-N bond and is acylated with 5,5-dimethyl-l-pipecolate. The roles of all flv enzymes are established on the basis of metabolite analysis from heterologous expression.
- Published
- 2019
33. Octyl substituted butenolides from marine-derived
- Author
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Hongbo, Huang, Yongxiang, Song, Ruochen, Zang, Xin, Wang, and Jianhua, Ju
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Magnetic Resonance Spectroscopy ,4-Butyrolactone ,Herpes Simplex ,Antiviral Agents ,Streptomyces - Abstract
A new butenolide derivative (
- Published
- 2019
34. Pulmonary arteriovenous fistula: a rare cause of spontaneous hemothorax
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Yingmei Jiang, Jian Li, Gang Xu, and Yongxiang Song
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Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,business.industry ,Spontaneous hemothorax ,medicine ,Surgical Technique ,Complication ,business ,Surgery ,Pulmonary Arteriovenous Fistula - Abstract
Pulmonary arteriovenous fistulas (PAVFs) are uncommon vascular malformations (1). Dyspnea and fatigue are the most common symptoms, with spontaneous hemothorax being a rare complication. Herein, we present a case with spontaneous hemothorax caused by the intrapleural rupture of the PAVF.
- Published
- 2019
35. Characterization of MtdV as a chorismate lyase essential to A201A biosynthesis and precursor-directed biosynthesis of new analogs
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Yongxiang Song, Qinghua Zhu, Hongbo Huang, Qinglian Li, and Jianhua Ju
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0301 basic medicine ,030106 microbiology ,Mutant ,Biochemistry ,Homology (biology) ,03 medical and health sciences ,chemistry.chemical_compound ,Biosynthesis ,Gene cluster ,Chorismate lyase ,Physical and Theoretical Chemistry ,education ,education.field_of_study ,Molecular Structure ,Organic Chemistry ,Computational Biology ,Oxo-Acid-Lyases ,In vitro ,Actinobacteria ,030104 developmental biology ,Aminoglycosides ,chemistry ,Mutation ,Biocatalysis ,Fermentation ,Nucleoside - Abstract
The antimicrobial nucleoside antibiotic A201A is produced by the deep-sea derived Marinactinospora thermotolerans SCSIO 00652. Bioinformatics analysis revealed that mtdV, downstream within the A201A biosynthetic gene cluster, encodes a protein with low homology to a group of chorismate pyruvate-lyases. To explore the role of mtdV in A201A biosynthesis, mtdV was inactivated and HPLC analysis revealed that the resulting ΔmtdV mutant failed to produce A201A; production was partially restored by adding exogenous 4-hydroxybenzoic acid (4HB) to the fermentation. In vitro biochemical assays showed that MtdV catalyzes the conversion of chorismate into 4HB, thereby firmly demonstrating that MtdV is a chorismate lyase involved in A201A biosynthesis. In addition, supplementation of the ΔmtdV mutant with various 4HB analogs enabled production of seven new A201A analogs. Antimicrobial assays showed that the purified A201A analogs 3'-F-A201A and 3'-Cl-A201A were just as active as A201A against the test strains with MIC values of 1-8 μg mL-1.
- Published
- 2019
36. Octyl substituted butenolides from marine-derived Streptomyces koyangensis
- Author
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Hongbo Huang, Yongxiang Song, Jianhua Ju, Ruochen Zang, and Xin Wang
- Subjects
chemistry.chemical_compound ,chemistry ,Stereochemistry ,Organic Chemistry ,Substitution (logic) ,Streptomyces koyangensis ,Plant Science ,Biochemistry ,Derivative (chemistry) ,Analytical Chemistry ,Butenolide - Abstract
A new butenolide derivative (1) featuring octyl substitution at γ-position, together with four known analogues (2–5) were isolated from marine-derived Streptomyces koyangensis SCSIO 5802. The structure of 1 was elucidated by HR-MS and NMR spectroscopic data analyses. The absolute configuration of the stereo centre in lactone ring of 1 was determined by comparison of CD spectrum with those of known compounds. Compound 1 exhibited mild antiviral activity against herpes simplex virus with EC50 value of 25.4 µM.
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- 2019
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37. Chemical Synthesis and Structure-Activity Relationship Study Yield Desotamide a Analogues with Improved Antibacterial Activity
- Author
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Jun Li, Run Xu, Jianhua Ju, Qinglian Li, and Yongxiang Song
- Subjects
0301 basic medicine ,QH301-705.5 ,medicine.drug_class ,030106 microbiology ,Antibiotics ,Pharmaceutical Science ,Microbial Sensitivity Tests ,Gram-Positive Bacteria ,medicine.disease_cause ,Peptides, Cyclic ,01 natural sciences ,Chemical synthesis ,Microbiology ,Structure-Activity Relationship ,03 medical and health sciences ,Antibiotic resistance ,Staphylococcus epidermidis ,Drug Discovery ,medicine ,Structure–activity relationship ,Biology (General) ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,biology ,010405 organic chemistry ,Chemistry ,Streptococcus ,Communication ,biology.organism_classification ,Streptomyces ,Anti-Bacterial Agents ,0104 chemical sciences ,antibacterial ,desotamides ,Staphylococcus aureus ,cyclohexapeptides ,solid-phase peptide synthesis ,drug-resistant bacteria ,Antibacterial activity - Abstract
Desotamides A, a cyclohexapeptide produced by the deep-sea-derived Streptomyces scopuliridis SCSIO ZJ46, displays notable antibacterial activities against strains of Streptococcus pnuemoniae, Staphylococcus aureus, and methicillin-resistant Staphylococcus epidermidis (MRSE). In this study, to further explore its antibacterial potential and reveal the antibacterial structure-activity relationship of desotamides, 13 cyclopeptides including 10 new synthetic desotamide A analogues and wollamides B/B1/B2 were synthesized and evaluated for their antibacterial activities against a panel of Gram-positive and -negative pathogens. The bioactivity data reveal that residues at position II and VI greatly impact antibacterial activity. The most potent antibacterial analogues are desotamide A4 (13) and A6 (15) where l-allo-Ile at position II was substituted with l-Ile and Gly at position VI was simultaneously replaced by d-Lys or d-Arg; desotamides A4 (13) and A6 (15) showed a 2–4-fold increase of antibacterial activities against a series of Gram-positive pathogens including the prevalent clinical drug-resistant pathogen methicillin-resistant Staphylococcus aureus (MRSA) with MIC values of 8–32 μg/mL compared to the original desotamide A. The enhanced antibacterial activity, broad antibacterial spectrum of desotamides A4 and A6 highlighted their potential as new antibiotic leads for further development.
- Published
- 2021
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38. An Articulated Inspection Arm for fusion purposes
- Author
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Shanshuang Shi, Congwei Liu, Yongxiang Song, L. Gargiulo, P. Pastor, E. Villedieu, Yan Cheng, Hansheng Feng, and Vincent Bruno
- Subjects
Tokamak ,Computer science ,Mechanical Engineering ,Frame (networking) ,Mechanical engineering ,Tore Supra ,01 natural sciences ,010305 fluids & plasmas ,law.invention ,Upgrade ,Nuclear Energy and Engineering ,law ,0103 physical sciences ,Robot ,General Materials Science ,Joint (building) ,Electronics ,010306 general physics ,Civil and Structural Engineering - Abstract
Fusion Tokamaks are complex machines which require special conditions for their operation, in particular, high vacuum inside the vessel and high temperature of the vessel walls. During plasma phases, the first wall components are highly stressed and a control is necessary in case of doubt about their condition. To be able to make safely such an inspection in a short period of time is a great advantage. The Articulated Inspection Arm (AIA) developed by the CEA provides the capability for fast inspections of the first wall overall surface keeping the vacuum and temperature conditions of the vessel. The robot prototype was validated in Tore Supra in 2008. In the frame of a joint laboratory, CEA/IRFM and ASIPP have decided to upgrade the existing AIA prototype to use it routinely in the EAST and WEST tokamaks. The robot has followed an important upgrade program in 2013 and 2014. The document presents the various upgrades made on the mechanics, the sensors, the electronics, the control station and the integration adaptation for the operation on EAST. From the AIA experience, thoughts for future inspection robots are given.
- Published
- 2016
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39. Abyssomicin Monomers and Dimers from the Marine-Derived Streptomyces koyangensis SCSIO 5802
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Yongxiang Song, Jianhua Ju, Zhenbin Zhou, Xiaoyi Wei, Qinglian Li, Chunyao Ling, Hongbo Huang, Xin Wang, Xin Li, and Xiangjing Qin
- Subjects
Methicillin-Resistant Staphylococcus aureus ,Stereochemistry ,Pharmaceutical Science ,Microbial Sensitivity Tests ,010402 general chemistry ,Ring (chemistry) ,01 natural sciences ,Analytical Chemistry ,chemistry.chemical_compound ,Biosynthesis ,Drug Discovery ,Molecule ,Humans ,Pharmacology ,biology ,Bacteria ,Molecular Structure ,010405 organic chemistry ,Organic Chemistry ,Streptomyces koyangensis ,Vesiculovirus ,biology.organism_classification ,Streptomyces ,0104 chemical sciences ,Anti-Bacterial Agents ,Monomer ,Complementary and alternative medicine ,chemistry ,Vesicular stomatitis virus ,Molecular Medicine - Abstract
Three new abyssomicin monomers designated neoabyssomicins D (1), E (2), and A2 (3) and the two dimeric neoabyssomicins F (4) and G (5) were discovered from the marine-derived Streptomyces koyangensis SCSIO 5802, and their structures rigorously elucidated. Neoabyssomicin D (1) possesses an unprecedented 8/5/5/7 ring skeleton, the biosynthesis of which (as well as 2) is proposed herein. Additionally, dimeric agents 4 and 5 were found to be active against methicillin-resistant Staphylococcus aureus and vesicular stomatitis virus, respectively.
- Published
- 2018
40. MOESM1 of Characterization and heterologous expression of the neoabyssomicin/abyssomicin biosynthetic gene cluster from Streptomyces koyangensis SCSIO 5802
- Author
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Jiajia Tu, Siting Li, Chen, Jiang, Yongxiang Song, Shaobin Fu, Jianhua Ju, and Qinglian Li
- Abstract
Additional file 1: Table S1. Bacteria used in this study. Table S2. Plasmids used in this study. Table S3. Primers used in this study. Figure S1. Chemical structures of tetronate-containing natural products and the unique set of five highly conserved genes responsible for tetronate biosynthesis. Figure S2. HPLC analyses of fermentation extracts of the inactivated mutants of boundary genes. Figure S3. Alignments of seven KS domains of AbmB1–B3. Figure S4. Alignments of five KR domains of AbmB1–B2. Figure S5. Alignments of five DH domains of AbmB1–B2. Figure S6. Alignments of five AT domains of AbmB1–B2. Figure S7. Alignments of AbmT with the typical type II TEs. Figure S8. The 14 transmembrane helices of AbmD. Figure S9. Alignments of AbmI with previously characterized SARP regulators. Figure S10. Alignments of AbmH with previously characterized LuxR-regulators. Figure S11. The quantitative HPLC standard curve for abyssomicin 2. Figures S12–S30. Disruption of 19 abm-related genes in wild-type S. koyangensis SCSIO 5802 via PCR-targeting.
- Published
- 2018
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41. Design and Analysis of Full Size Joint Sample for ITER PF Coil
- Author
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Yongxiang Song, Yong-Gang Yao, Huan Wu, Guozhen Shen, Xiongyi Huang, Wang Linsen, X. D. Zheng, and Bin Hu
- Subjects
Superconductivity ,Nuclear and High Energy Physics ,Materials science ,Nuclear engineering ,Plasma ,Conductor ,Coolant ,law.invention ,Nuclear Energy and Engineering ,Electromagnetic coil ,law ,Nuclear fusion ,Transformer ,Voltage - Abstract
Joints are essential components of poloidal field coil in fusion device, serving as an electric and coolant transfer between adjacent superconductors. The design of full size joint sample has been carried out by ASIPP. In the future, this sample will be tested in the Sultan facility at Villigen. The test contents include joint total resistance at 4.2 K and 55 kA with 2 T external field, and AC losses at 4.2 K and 45 kA with an external field varying from 0 to 2 T in 1 s. This paper mainly describes the design and analysis of full size joint sample. This sample is composed of two single conductor legs, a praying-hand joint to be placed in the high field, and two terminals to be connected to the transformer of the test facility. The temperature sensors and voltage taps are used for measuring and calculating the DC resistance and AC loss. In order to support the design, the electromagnetic and mechanical analyses are performed. According to the electromagnetic and mechanical analyses, the results show that this design is feasible.
- Published
- 2015
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42. Borrelidins F-I, cytotoxic and cell migration inhibiting agents from mangrove-derived Streptomyces rochei SCSIO ZJ89
- Author
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Jianbin Sun, Qinglian Li, Chun Gui, Yongxiang Song, Junli Shao, Hua Zhang, Jianhua Ju, Changli Sun, Laichun Lu, and Yunfeng Hu
- Subjects
0301 basic medicine ,Stereochemistry ,Clinical Biochemistry ,Pharmaceutical Science ,Antineoplastic Agents ,01 natural sciences ,Biochemistry ,Streptomyces ,Cell Line ,03 medical and health sciences ,Structure-Activity Relationship ,Cell Movement ,Drug Discovery ,Cytotoxic T cell ,Moiety ,Humans ,Molecular Biology ,Bioactive scaffold ,Therapeutic window ,Wound Healing ,biology ,Dose-Response Relationship, Drug ,Molecular Structure ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Streptomyces rochei ,Cell migration ,biology.organism_classification ,In vitro ,0104 chemical sciences ,030104 developmental biology ,Molecular Medicine ,Drug Screening Assays, Antitumor ,Fatty Alcohols - Abstract
Borrelidin A (1) is produced by several species of Streptomyces and within its bioactive scaffold, the vinylic nitrile moiety is essential for activity. We report herein newly discovered members of the borrelidin family, borrelidin F (2), borrelidin G (3), borrelidin H (4) and borrelidin I (5); all were isolated from Streptomyces rochei SCSIO ZJ89 originating from a mangrove-derived sediment sample. These structurally diverse metabolites enabled a number of new structure-activity relationships (SARs) to be identified, especially with respect to the different configurations at the C11-OH and C12-C15 double bonds for which the absolute configurations were determined using spectroscopic methods. Importantly, borrelidin H (4) was found to have a therapeutic window superior to that of borrelidin A (1) in vitro and could inhibit migration of cancer cells.
- Published
- 2017
43. Grincamycins I - K, Cytotoxic Angucycline Glycosides Derived from Marine-Derived Actinomycete Streptomyces lusitanus SCSIO LR32
- Author
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Yongxiang Song, Jianhua Ju, Huiping Ling, Jianchen Yu, Hongbo Huang, Jie Yuan, Zhenzhu Lai, and Yiwen Tao
- Subjects
Stereochemistry ,Pharmaceutical Science ,Anthraquinones ,Antineoplastic Agents ,01 natural sciences ,Streptomyces ,Analytical Chemistry ,chemistry.chemical_compound ,Cell Line, Tumor ,Drug Discovery ,Humans ,Cytotoxicity ,Pharmacology ,chemistry.chemical_classification ,biology ,Molecular Structure ,010405 organic chemistry ,Streptomycetaceae ,Organic Chemistry ,Glycoside ,biology.organism_classification ,Antimicrobial ,Streptomyces lusitanus ,0104 chemical sciences ,Anti-Bacterial Agents ,010404 medicinal & biomolecular chemistry ,Micrococcus luteus ,Complementary and alternative medicine ,chemistry ,Molecular Medicine ,Drug Screening Assays, Antitumor - Abstract
Three new angucycline glycosides, designated grincamycin I (1), J (2), and K (3), together with the known congener A-7884 (4), were isolated from marine-derived actinomycete Streptomyces lusitanus SCSIO LR32. The structures of the new compounds were elucidated by comprehensive spectral data analysis. Compounds 2 and 4 exhibited antitumor activity against human cancer cells MDA-MB-435, MDA-MB-231, NCI-H460, HCT-116 and HepG2, and human normal breast epithelial cell MCF10A with IC50 values ranging from 0.4 to 6.9 µM. In addition, A-7884 (4) demonstrated antimicrobial activity against Micrococcus luteus with an MIC value of 1.95 µg/mL.
- Published
- 2017
44. Engineering Design of EAST Passive Stabilization Loop
- Author
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Jinguang Wu, C. Wang, J.G. Li, D.M. Gao, N. Zhu, B. Shen, Peng Zhang, Tiejun Xu, X. Ji, X. Liu, X.Z. Gong, Songke Wang, Guozhen Shen, Pingqing Fu, Lei Cao, B. N. Wan, X.B. Peng, Zibo Zhou, and Yongxiang Song
- Subjects
Nuclear and High Energy Physics ,Toroid ,Tokamak ,Materials science ,Steady state ,Shell (structure) ,Mechanical engineering ,Plasma ,law.invention ,Nuclear Energy and Engineering ,Physics::Plasma Physics ,law ,Counterpoise ,Current (fluid) ,Coaxial - Abstract
EAST, with full superconducting magnetic coils, has been designed and constructed to address the scientific and engineering issues under steady state operation. It has passive stabilizers with the function of protecting the vacuum vessel, heating systems and diagnostic components from the plasma particles and heat loads. As the vertical plasma motion is unstable in tokamak with elongated D-shape plasma, the passive stabilizers and in-vessel active feedback coils are used for vertical plasma position control in EAST. To accommodate with the new stage for high performance plasma and enhance the control of vertical stabilization in EAST, the project of passive stabilization loop (PSL), connect all the independent passive stabilizers together as a loop, has been accomplished. The PSL consists of 32 passive stabilizers and the current bridges. All the supporting structures of PSL are insulated from the vacuum vessel. The separate passive stabilizers are electrically connected together forming the upper and lower toroidal loops, and then the two loops are electrically connected by the copper current bridges. The current bridges are designed coaxial and symmetrical in order to counterpoise the electromagnetic forces. There are insulation layer and external resistor between the outer and inner bridges to avoid breakdown. What’s more, a stainless steel shell with graphite tiles is covered on the bridges to protect them from the plasma. The total resistance of PSL is reduced to 150 micro ohms by silver plating on the contact surface. As indicated, the PSL was fabricated and assembled successfully and met the design requirement for the plasma operation. With the PSL, the control of the vertical stabilization is improved.
- Published
- 2014
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45. New anti-infective cycloheptadepsipeptide congeners and absolute stereochemistry from the deep sea-derived Streptomyces drozdowiczii SCSIO 10141
- Author
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Yongxiang Song, Ren-Wang Jiang, Jing Liu, Hongbo Huang, Si Zhang, Xiao Zhou, Yan Hua, Jie Li, and Jianhua Ju
- Subjects
biology ,Chemistry ,Stereochemistry ,Organic Chemistry ,biology.organism_classification ,Biochemistry ,Deep sea ,Human tumor ,Drug Discovery ,Side chain ,Anti infectives ,Streptomyces drozdowiczii ,Amino acid residue ,Cytotoxicity ,Micrococcus luteus - Abstract
Six cycloheptadepsipeptides, marformycins A-F (1-6), featuring a unique N-terminally formylated side chain and five non-proteinogenic amino acid residues, were isolated from the deep Sea-derived Streptomyces drozdowiczii SCSIO 10141. The previously unsolved absolute stereochemistry of 3 and 4 was determined and the structures of other four new congeners were elucidated by extensive spectroscopic, chiral-phase HPLC, and single-crystal X-ray diffraction analyses. Compounds 1-5 bear no cytotoxicity against a number of human tumor cell lines but show selective anti-infective activity against Micrococcus luteus. (C) 2014 Elsevier Ltd. All rights reserved.
- Published
- 2014
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46. Chemoenzymatic synthesis of β-carboline derivatives using McbA, a new ATP-dependent amide synthetase
- Author
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Changtao Ji, Yongxiang Song, Jianhua Ju, Junying Ma, Qi Chen, Hongbo Huang, and Qinglian Li
- Subjects
chemistry.chemical_classification ,Tryptamine ,Chemistry ,beta-Carboline ,Stereochemistry ,Organic Chemistry ,Substrate (chemistry) ,Biochemistry ,In vitro ,chemistry.chemical_compound ,Enzyme ,Amide ,Drug Discovery ,Peptide bond ,Amine gas treating - Abstract
McbA was characterized in vitro as a novel amide synthetase in the marinacarbolines A-D biosynthetic pathway, catalyzing amide bond formation between 1-acetyl-3-carboxy-beta-carboline (la) and substituted-beta-phenethylamines (1b, 213, 3b) and tryptamine (4b) in an ATP-dependent manner. Enzyme kinetic analyses highlight beta-phenethylamine as the most suitable amine donor. McbA showed broad substrate compatibility with substituted amines; 10 new beta-carboline analogues were chemoenzymatically generated. (C) 2014 Elsevier Ltd. All rights reserved.
- Published
- 2014
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47. Cyclic Hexapeptides from the Deep South China Sea-Derived Streptomyces scopuliridis SCSIO ZJ46 Active Against Pathogenic Gram-Positive Bacteria
- Author
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Yuchan Chen, Yongxiang Song, Aijun Sun, Jianhua Ju, Weimin Zhang, Qinglian Li, Yun Zhang, Jing-Ren Zhang, and Xue Liu
- Subjects
China ,Staphylococcus aureus ,Stereochemistry ,Gram-positive bacteria ,Pharmaceutical Science ,Marine Biology ,Microbial Sensitivity Tests ,Biology ,Gram-Positive Bacteria ,medicine.disease_cause ,Peptides, Cyclic ,Analytical Chemistry ,Microbiology ,Structure-Activity Relationship ,Staphylococcus epidermidis ,Drug Discovery ,medicine ,Structure–activity relationship ,Amino Acid Sequence ,Nuclear Magnetic Resonance, Biomolecular ,Chromatography, High Pressure Liquid ,Streptomyces scopuliridis ,Pharmacology ,Molecular Structure ,Streptococcus ,Organic Chemistry ,biology.organism_classification ,Streptomyces ,Anti-Bacterial Agents ,Formylation ,Complementary and alternative medicine ,Molecular Medicine ,Methicillin Resistance ,Antibacterial activity - Abstract
Three new cyclohexapeptides, desotamides B-D (2-4), and the known desotamide (1) were isolated from marine microbe Streptomyces scopuliridis SCSIO ZJ46. The sequences and absolute configurations of 2-4 were elucidated on the basis of high-resolution spectroscopic data, Marfey's method, and chiral-phase HPLC data. Desotamide C (3) contains a unique N-formyl-kynurenine residue, whereas 4 lacks formylation at the same site. Compounds 1 and 2 displayed notable antibacterial activities against strains of Streptococcus pnuemoniae, Staphylococcus aureus, and methicillin-resistant Staphylococcus epidermidis (MRSE), and structure activity relationship studies revealed the indispensability of the Trp component for antibacterial activity within this new scaffold.
- Published
- 2014
- Full Text
- View/download PDF
48. Mechanical Analysis for ITER Lower CC Feeder
- Author
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X. Ji, Yongxiang Song, Kathy Lu, Zhiren Luo, Ya Cheng, Shuai Zhang, S. S. Du, and Z.W. Wang
- Subjects
Nuclear and High Energy Physics ,Thermal shrinkage ,Materials science ,Nuclear Energy and Engineering ,Busbar ,Nuclear engineering ,Thermal ,Nuclear fusion ,Duct (flow) ,Plasma ,Electric power ,Size effect on structural strength - Abstract
ITER correction coils (CCs) feeder is the important component of ITER feeder systems to supply the cryogens and electrical power for CCs. They should withstand the huge electromagnetic (EM) force and high thermal shrinkage. Considering the EM and thermal loads, mechanical analysis is performed to qualify the structural strength of the lower CC feeder. Results show that containment duct and cryopipe can meet the static criteria but busbar jacket cannot meet. It is proposed that more supports should be added at the corners for the busbar. Basically, the lower CC feeder design is valid and feasible.
- Published
- 2014
- Full Text
- View/download PDF
49. Structural and Fracture Mechanics Analysis for the Bracket of ITER Upper ELM Coil
- Author
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Z.W. Wang, H. Jin, S. S. Du, Yongxiang Song, Shuai Zhang, X. Ji, and Zhiren Luo
- Subjects
Nuclear and High Energy Physics ,Materials science ,business.industry ,Bracket ,Structural integrity ,Fracture mechanics ,Structural engineering ,Edge (geometry) ,Finite element method ,Stress (mechanics) ,Nuclear Energy and Engineering ,Electromagnetic coil ,business ,Stress intensity factor - Abstract
The brackets are the important components of ITER edge localized modes (ELM) coils to connect the coils and rails. In order to assure the structural integrity and security of the bracket, the maximum tresca stress and stress intensity factor are examined from the viewpoints of structural and fracture mechanics. Based on the finite element method, the global upper ELM coils with simplified and detailed bracket are investigated. Since it is difficult to perform in-service inspection due to inaccessibility of in-vessel coils, it is important to estimate the allowable initial defect. Assuming an initial crack in the maximum first principal stress region on the bracket, the fracture mechanics analyses under different loads are performed. Results show that the bracket design is valid and feasible and the calculation method of finite element for stress intensity factor is feasible and reliable. Assuming the initial crack of 7 mm depth, the bracket can meet the crack growth criteria. The stress intensity factor of the bracket is mainly caused by electromagnetic (EM) load and the thermal load can reduce the stress intensity factor under EM load. The thermal load can make the crack grow on the surface of the bracket and the EM load can cause the crack to extend in the inner of the bracket.
- Published
- 2014
- Full Text
- View/download PDF
50. Design Study of Support for ITER ELM Coils
- Author
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Yongxiang Song, Y. Meng, S. S. Du, S. Lu, Shuai Zhang, Zhenyu Wang, X. Ji, and Xiaofeng Liu
- Subjects
Nuclear and High Energy Physics ,Materials science ,Nuclear Energy and Engineering ,Electromagnetic coil ,Thermal ,Design study ,Mechanical engineering ,Nuclear fusion ,Plasma ,Thermal expansion ,Finite element method ,Conductor - Abstract
The support is an important part of ITER ELM coils. It should withstand the alternating electromagnetic (EM) force and thermal stresses. Based on the finite element method, 2D and 3D structures of the rigid and flexible support of ITER upper ELM coil in different loads are studied. Results show that the flexible support can reduce the stresses of the conductor and jacket. In the lower level of nuclear heat, two types of supports can be used in the quarter model. In the high level of nuclear heat, the flexible support is needed and 50 mm support is proposed for the quarter model. Considering the EM load, the rigid support has better performance than the flexible support. Therefore, reasonable support can be provided for ELM coil or similar coil according to the thermal expansion and EM load.
- Published
- 2014
- Full Text
- View/download PDF
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