1. Additional file 1 of Long-term nitrogen deposition enhances microbial capacities in soil carbon stabilization but reduces network complexity
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Ma, Xingyu, Wang, Tengxu, Shi, Zhou, Chiariello, Nona R., Docherty, Kathryn, Field, Christopher B., Gutknecht, Jessica, Gao, Qun, Gu, Yunfu, Guo, Xue, Hungate, Bruce A., Lei, Jiesi, Niboyet, Audrey, Le Roux, Xavier, Yuan, Mengting, Yuan, Tong, Zhou, Jizhong, and Yang, Yunfeng
- Abstract
Additional file 1: Table S1. Comparison of taxonomic and functional β-diversity between and within treatments. Table S2. Effects of N deposition on microbial taxonomic and functional diversity, as assessed by Shannon index. Table S3. Significantly changed representative OTUs calculated by difference analyses. Table S4. Topological properties of microbial functional gene networks. Table S5. Summary of soil and vegetation attributes in control and N deposited samples. Table S6. Mantel tests for correlations between a range of environmental attributes and quantitative measures of microbial community dissimilarity. Fig. S1. Comparison of the percentage change by N deposition for (a) microbial phyla; (b) N cycling genes; and (c) C cycling genes between using 32 and 4 samples as biological replicates. Fig. S2. The percentage change in relative abundances of microbial class induced by long-term N deposition. Asterisks indicate significant differences. *, P < 0.050; **, P < 0.010. Fig. S3. The percentage change in the relative abundance of major microbial genera induced by long-term N deposition treatment. All selected genera are significantly changed by N deposition treatment as calculated by the response ratio analysis. Fig. S4. The percentage change in the relative abundance of genes associated with C fixation induced by N deposition, calculated as 100*(( mean value in N deposited samples/mean value in control samples) – 1). Mean values and standard deviations are presented. Asterisks indicate significant differences. *, P < 0.050; **, P < 0.010. The numbers in the figure represent the pathways of C fixation. (i) 3-hydroxypropionate bicycle, (ii) Bacterial microcompartments, (iii) Calvin cycle, and (iv) Reductive tricarboxylic acid cycle. Fig. S5. The percentage change in the relative abundance of genes associated with methane and phosphorus cycling genes induced by N deposition, calculated as 100*((mean value in N deposited samples/mean value in control samples) – 1). Mean values and standard deviations are presented. Asterisks indicate significant differences. *, P < 0.050; **, P < 0.010. Fig. S6. N deposition effects on amoA gene. The relative abundance of amoA is presented as the signal intensity difference between control and N deposited samples. Error bars represent standard errors. Blue bars represent genes derived from archaea (AOA), and pink bars represent genes derived from bacteria (AOB). Asterisks indicate significant differences. *, P < 0.050; **, P < 0.010.
- Published
- 2022
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