73 results on '"Xuelian Luo"'
Search Results
2. Species-Level Taxonomic Characterization of Uncultured Core Gut Microbiota of Plateau Pika
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Ji Pu, Jing Yang, Shan Lu, Dong Jin, Xuelian Luo, Yanwen Xiong, Xiangning Bai, Wentao Zhu, Yuyuan Huang, Shusheng Wu, Lina Niu, Liyun Liu, and Jianguo Xu
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Microbiology (medical) ,Infectious Diseases ,General Immunology and Microbiology ,Ecology ,Physiology ,Genetics ,Cell Biology - Abstract
The great majority of microbial species remain uncultured, severely limiting their taxonomic characterization and biological understanding. The plateau pika ( Ochotona curzoniae ) is a small burrowing steppe lagomorph that is endemic to the Qinghai-Tibetan Plateau and is considered to be the keystone species in the maintenance of ecological stability.
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- 2023
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3. Author response: Discovery of a new class of reversible TEA domain transcription factor inhibitors with a novel binding mode
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Shun Liu, Yang Sun, Lu Hu, Hannah Erb, Alka Singh, Junhao Mao, Xuelian Luo, and Xu Wu
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- 2022
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4. Genomic Characterization of a New Coronavirus from Migratory Birds in Jiangxi Province of China
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Shan Lu, Wentao Song, Jing Yang, Guoyin Fan, Xuelian Luo, Wentao Zhu, Dong Jin, Haiying Chen, Jianguo Xu, and Ji Pu
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Male ,China ,2019-20 coronavirus outbreak ,medicine.medical_specialty ,Letter ,Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Pneumonia, Viral ,Immunology ,Genome, Viral ,Peptidyl-Dipeptidase A ,Biology ,Antibodies, Viral ,Severe Acute Respiratory Syndrome ,medicine.disease_cause ,Cell Line ,Disease Outbreaks ,Betacoronavirus ,Medical microbiology ,Chiroptera ,Sequence Homology, Nucleic Acid ,Virology ,Chlorocebus aethiops ,medicine ,Animals ,Humans ,Vero Cells ,Phylogeny ,Coronavirus ,SARS-CoV-2 ,COVID-19 ,Severe acute respiratory syndrome-related coronavirus ,Molecular Medicine ,Female ,Angiotensin-Converting Enzyme 2 ,Coronavirus Infections - Abstract
Since the outbreak of severe acute respiratory syndrome (SARS) 18 years ago, a large number of SARS-related coronaviruses (SARSr-CoVs) have been discovered in their natural reservoir host, bats
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- 2021
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5. Cryo-EM structure of the Hippo signaling integrator human STRIPAK
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Xuewu Zhang, Lisheng Ni, Byung Cheon Jeong, Xuelian Luo, Xiao Chen Bai, and Sung Jun Bae
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Models, Molecular ,Phytic Acid ,Cryo-electron microscopy ,Protein subunit ,Phosphatase ,Protein Serine-Threonine Kinases ,Autoantigens ,Article ,03 medical and health sciences ,0302 clinical medicine ,Multienzyme Complexes ,Structural Biology ,Humans ,Hippo Signaling Pathway ,Protein Phosphatase 2 ,Molecular Biology ,Adaptor Proteins, Signal Transducing ,030304 developmental biology ,0303 health sciences ,Hippo signaling pathway ,Chemistry ,Cell growth ,Kinase ,Cryoelectron Microscopy ,Protein phosphatase 2 ,Phosphate-Binding Proteins ,Cell biology ,Protein Subunits ,Hippo signaling ,Mutation ,Calmodulin-Binding Proteins ,Protein Multimerization ,030217 neurology & neurosurgery ,Signal Transduction - Abstract
The striatin-interacting phosphatase and kinase (STRIPAK) complex is a large, multisubunit protein phosphatase 2A (PP2A) assembly that integrates diverse cellular signals in the Hippo pathway to regulate cell proliferation and survival. The architecture and assembly mechanism of this critical complex are poorly understood. Using cryo-EM, we determine the structure of the human STRIPAK core comprising PP2AA, PP2AC, STRN3, STRIP1, and MOB4 at 3.2-A resolution. Unlike the canonical trimeric PP2A holoenzyme, STRIPAK contains four copies of STRN3 and one copy of each the PP2AA-C heterodimer, STRIP1, and MOB4. The STRN3 coiled-coil domains form an elongated homotetrameric scaffold that links the complex together. An inositol hexakisphosphate (IP6) is identified as a structural cofactor of STRIP1. Mutations of key residues at subunit interfaces disrupt the integrity of STRIPAK, causing aberrant Hippo pathway activation. Thus, STRIPAK is established as a noncanonical PP2A complex with four copies of regulatory STRN3 for enhanced signal integration.
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- 2021
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6. Discovery of a new class of reversible TEA-domain transcription factor inhibitors with a novel binding mode
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Shun Liu, Yang Sun, Lu Hu, Hannah Erb, Alka Singh, Junhao Mao, Xuelian Luo, and Xu Wu
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General Immunology and Microbiology ,General Neuroscience ,Humans ,TEA Domain Transcription Factors ,General Medicine ,General Biochemistry, Genetics and Molecular Biology ,Transcription Factors - Abstract
The TEA domain (TEAD) transcription factor forms a transcription co-activation complex with the key downstream effector of the Hippo pathway, YAP/TAZ. TEAD-YAP controls the expression of Hippo-responsive genes involved in cell proliferation, development, and tumorigenesis. Hyperactivation of TEAD-YAP activities is observed in many human cancers, and is associated with cancer cell proliferation, survival and immune evasion. Therefore, targeting the TEAD-YAP complex has emerged as an attractive therapeutic approach. We previously reported that the mammalian TEAD transcription factors (TEAD1-4) possess auto-palmitoylation activities and contain an evolutionarily conserved palmitate-binding pocket (PBP), which allows small molecule modulation. Since then, several reversible and irreversible inhibitors have been reported by binding to PBP. Here, we report a new class of TEAD inhibitors with a novel binding mode. Representative analog TM2 shows potent inhibition of TEAD auto-palmitoylation both in vitro and in cells. Surprisingly, the co-crystal structure of the human TEAD2 YAP-binding domain (YBD) in complex with TM2 reveals that TM2 adopts an unexpected binding mode by occupying not only the hydrophobic PBP, but also a new side binding pocket formed by hydrophilic residues. RNA-seq analysis shows that TM2 potently and specifically suppresses TEAD-YAP transcriptional activities. Consistently, TM2 exhibits strong anti-proliferation effects as a single agent or in combination with a MEK inhibitor in YAP-dependent cancer cells. These findings establish TM2 as a promising small molecule inhibitor against TEAD-YAP activities and provide new insights for designing novel TEAD inhibitors with enhanced selectivity and potency.
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- 2022
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7. Arthrobacter yangruifuii sp. nov. and Arthrobacter zhaoguopingii sp. nov., two new members of the genus Arthrobacter
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Juan Zhou, Xiaoyan Zhang, Dong Jin, Yuanmeihui Tao, Ying Huang, Yajun Ge, Xuelian Luo, Shan Lu, Xin-He Lai, Jianguo Xu, and Jing Yang
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Strain (chemistry) ,Arthrobacter luteolus ,Stereochemistry ,Arthrobacter agilis ,Arthrobacter gandavensis ,General Medicine ,Biology ,Arthrobacter koreensis ,16S ribosomal RNA ,biology.organism_classification ,Microbiology ,Arthrobacter citreus ,Arthrobacter ,Ecology, Evolution, Behavior and Systematics - Abstract
Four unknown strains belonging to the genus Arthrobacter were isolated from plateau wildlife on the Qinghai–Tibet Plateau of PR China. Phylogenetic analysis based on 16S rRNA gene sequences showed that the four isolates were separated into two clusters. Cluster I (strains 785T and 208) had the greatest 16S rRNA gene sequence similarity to Arthrobacter citreus (98.6 and 98.7 %, respectively), Arthrobacter luteolus (98.0 and 98.1%, respectively), Arthrobacter gandavensis (97.9 and 98.0 %, respectively) and Arthrobacter koreensis (97.6 and 97.7 %, respectively). Likewise, cluster II (strains J391T and J915) had the highest sequence similarity to Arthrobacter ruber (98.6 and 98.3 %, respectively) and Arthrobacter agilis (98.1 and 97.9 %, respectively). Average nucleotide identity and the digital DNA–DNA hybridization values illustrated that the two type strains, 785T and J391T, represented two separate novel species that are distinct from all currently recognized species in the genus Arthrobacter . These strains had DNA G+C contents of 66.0–66.1 mol% (cluster I) and 68.0 mol% (cluster II). The chemotaxonomic properties of strains 785T and J391T were in line with those of the genus Arthrobacter : anteiso-C15:0 (79.3 and 40.8 %, respectively) as the major cellular fatty acid, MK-8(H2) (65.8 %) or MK-9(H2) (75.6 %) as the predominant respiratory quinone, a polar lipid profile comprising diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, glycolipids and phospholipid, and A3α or A4α as the cell wall peptidoglycan type. On the basis of our results, two novel species in the genus Arthrobacter are proposed, namely Arthrobacter yangruifuii sp. nov. (type strain, 785T=CGMCC 1.16725T=GDMCC 1.1592T=JCM 33491T) and Arthrobacter zhaoguopingii sp. nov. (type strain, J391T=CGMCC 1.17382T=GDMCC 1.1667T=JCM 33841T).
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- 2020
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8. MicroRNA-767-5p Promotes Metastasis But Improves Chemotherapeutic and Radiotherapeutic Sensitivity of Osteosarcoma by Targeting the Aryl Hydrocarbon Receptor
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Xuelian Luo, Qingsong Wei, Xiaoyan Dai, Xiaorong Tan, Shuai Wang, Hanxi Xiao, Youcai Deng, and Zhaoyang Zhong
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History ,Polymers and Plastics ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2022
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9. Boosting Vaccine-Elicited Respiratory Mucosal and Systemic COVID-19 Immunity in Mice With the Oral Lactobacillus plantarum
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Jianqing Xu, Zhihong Ren, Kangli Cao, Xianping Li, Jing Yang, Xuelian Luo, Lingyan Zhu, Xiangwei Wang, Longfei Ding, Junrong Liang, Dong Jin, Tingting Yuan, Lianfeng Li, and Jianguo Xu
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Nutrition and Dietetics ,Nutrition. Foods and food supply ,Endocrinology, Diabetes and Metabolism ,COVID-19 ,respiratory system ,biochemical phenomena, metabolism, and nutrition ,respiratory tract diseases ,memory immunity ,probiotics ,adjuvant ,vaccine ,gut-lung axis ,TX341-641 ,Food Science - Abstract
Boosting and prolonging SARS-CoV-2 vaccine-elicited immunity is paramount for containing the COVID-19 pandemic, which wanes substantially within months after vaccination. Here we demonstrate that the unique strain of probiotic Lactobacillus plantarum GUANKE (LPG) could promote SARS-CoV-2-specific immune responses in both effective and memory phases through enhancing interferon signaling and suppressing apoptotic and inflammatory pathways. Interestingly, oral LPG administration promoted SARS-CoV-2 neutralization antibodies even 6 months after immunization. Furthermore, when LPG was given immediately after SARS-CoV-2 vaccine inoculation, specific neutralization antibodies could be boosted >8-fold in bronchoalveolar lavage (BAL) and >2-fold in sera, T-cell responses were persistent and stable for a prolonged period both in BAL and the spleen. Transcriptional analyses showed that oral application of LPG mobilized immune responses in the mucosal and systemic compartments; in particular, gut-spleen and gut-lung immune axes were observed. These results suggest that LPG could be applied in combination with SARS-CoV-2 vaccines to boost and prolong both the effective and memory immune responses in mucosal and systemic compartments, thereby improving the efficacy of SARS-CoV-2 vaccination.
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- 2021
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10. Incorporating quaternary mesoporous nanospheres and DNA stochastic nanowalkers into a signal amplified switch: A highly sensitive electrochemical assay for APE1
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Qingsong Wei, Zhisheng Teng, Xuelian Luo, Yuxin Yang, Yuxia Ren, Wenbin Liang, Ying Zhuo, and Zhaoyang Zhong
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Materials Chemistry ,Metals and Alloys ,Electrical and Electronic Engineering ,Condensed Matter Physics ,Instrumentation ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials - Published
- 2022
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11. Boosting Vaccine-Elicited Respiratory Mucosal and Systemic COVID-19 Immunity in Mice With the Oral
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Jianqing, Xu, Zhihong, Ren, Kangli, Cao, Xianping, Li, Jing, Yang, Xuelian, Luo, Lingyan, Zhu, Xiangwei, Wang, Longfei, Ding, Junrong, Liang, Dong, Jin, Tingting, Yuan, Lianfeng, Li, and Jianguo, Xu
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Boosting and prolonging SARS-CoV-2 vaccine-elicited immunity is paramount for containing the COVID-19 pandemic, which wanes substantially within months after vaccination. Here we demonstrate that the unique strain of probiotic
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- 2021
12. Identification and Antioxidant Activity of a Novel Peptide from Baijiu
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Jihong Wu, Mingquan Huang, Xuelian Luo, Jinglin Zhang, Hehe Li, Xiaotao Sun, Jiaying Huo, and Xingxun Liu
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chemistry.chemical_classification ,Antioxidant ,ABTS ,Oxygen radical absorbance capacity ,biology ,010405 organic chemistry ,DPPH ,Glutathione peroxidase ,medicine.medical_treatment ,Bioengineering ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,Analytical Chemistry ,Superoxide dismutase ,chemistry.chemical_compound ,chemistry ,Catalase ,Drug Discovery ,medicine ,biology.protein ,Molecular Medicine ,Trolox - Abstract
A novel peptide, Cys-Trp-Cys (CWC), which firstly isolated from Guojing Baijiu was qualitative and quantitative studied by high-performance liquid chromatography and quadrupole-time-of-flight-mass spectrometry (HPLC- Q-TOF-MS) with a concentration of 11.06 ± 0.34 μg/L (P > 0.05). The antioxidant activity of the peptide was evaluated by the HepG2 cell model induced by 2, 2′-azobis (2-methyl propanimidamidine) dihydrochloride (AAPH) and in vitro chemical assays, including (1,1-diphenyl- 2-picrylhydrazyl radical 2,2-diphenyl- 1-(2,4,6-trinitrophenyl) hydrazyl (DPPH), 2,2’-azinobis-(3-ethylbenzthiazoline- 6-sulphonate) (ABTS), oxygen radical absorbance capacity, reducing power, and metal chelation assays. The results showed that CWC exhibited stronger antioxidant activity than Trolox in the ABTS assay. Furthermore, CWC inhibited AAPH-induced oxidative stress in HepG2 cells with a dose-dependent manner. Pretreatment of the cells with CWC (1, 2, and 4 mg/mL) caused the strong scavenging activities on the intracellular reactive oxygen species and a marked decrease in the reduced malondialdehyde (MDA). In addition, pretreatment with CWC prevented significantly the activities decrease in glutathione peroxidase (GSH-Px), superoxide dismutase (SOD), and catalase (CAT) induced by AAPH. CWC had strong antioxidant activity mainly due to its Cys residue containing a thiol group (–SH). These findings indicated that CWC was a potent natural antioxidant in Baijiu, which would be important for deeply understanding the relationship between the health and Baijiu.
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- 2019
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13. Structural basis of tubulin detyrosination by vasohibins
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Faxiang Li, Yingjie Hu, Shutao Qi, Xuelian Luo, and Hongtao Yu
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Models, Molecular ,0303 health sciences ,Protein Conformation ,Cell Cycle Proteins ,macromolecular substances ,Crystallography, X-Ray ,Article ,03 medical and health sciences ,0302 clinical medicine ,Tubulin ,Structural Biology ,Humans ,Carrier Proteins ,Molecular Biology ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
Microtubules are regulated by posttranslational modifications (PTMs) of tubulin. The ligation and cleavage of the C-terminal tyrosine of α tubulin impact microtubule functions during mitosis, cardiomyocyte contraction, and neuronal processes. Tubulin tyrosination and detyrosination are mediated by tubulin tyrosine ligase (TTL) and the recently discovered tubulin detyrosinases, vasohibin 1 and 2 (VASH1 and VASH2) bound to the small vasohibin-binding protein (SVBP). Here, we report the crystal structures of human VASH1–SVBP alone, in complex with a tyrosine-derived covalent inhibitor, and bound to the natural product parthenolide. The structures and subsequent mutagenesis analyses explain the requirement for SVBP during tubulin detyrosination, and reveal the basis for the recognition of the C-terminal tyrosine and the acidic α tubulin tail by VASH1. The VASH1–SVBP–parthenolide structure provides a framework for designing more effective chemical inhibitors of vasohibins, which can be valuable for dissecting their biological functions and may have therapeutic potential.
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- 2019
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14. Analysis of antioxidant effect of two tripeptides isolated from fermented grains (Jiupei) and the antioxidative interaction with 4‐methylguaiacol, 4‐ethylguaiacol, and vanillin
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Jinyuan Sun, Yunsong Jiang, Xiaotao Sun, Hehe Li, Xuelian Luo, Fuping Zheng, and Dongrui Zhao
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Antioxidant ,Oxygen radical absorbance capacity ,medicine.medical_treatment ,interaction effect ,lcsh:TX341-641 ,phenols ,Tripeptide ,01 natural sciences ,antioxidant tripeptides ,chemistry.chemical_compound ,0404 agricultural biotechnology ,medicine ,Food science ,Phenols ,HepG2 cells ,Original Research ,chemistry.chemical_classification ,Reactive oxygen species ,Chemistry ,Vanillin ,010401 analytical chemistry ,04 agricultural and veterinary sciences ,4-Ethylguaiacol ,040401 food science ,0104 chemical sciences ,Fermentation ,Jiupei ,lcsh:Nutrition. Foods and food supply ,Food Science - Abstract
Jiupei (fermented grains) is the raw material for Baijiu distillation. The antioxidant activities of peptides Val‐Asn‐Pro (VNP) and Tyr‐Gly‐Asp (YGD) identified from Jiupei were evaluated according to in vitro chemical assays (e.g., 2,2′‐azino‐bis (3‐ethylbenzothiazoline‐6‐sulfonic acid) diammonium salt, 1,1‐diphenyl‐2‐picrylhydrazyl, and oxygen radical absorbance capacity) and 2,2′‐azobis (2‐methylpropionamide)‐dihydrochloride‐activated HepG2 cell model. The interaction on antioxidant activities between peptides (VNP and YGD) and three functional phenols (4‐methylguaiacol, 4‐ethylguaiacol, and vanillin) which were found in Baijiu was also measured. On the basis of the results, two peptides exhibited strong antioxidant ability in oxygen radical absorbance capacity (ORAC) assay. Furthermore, they suppressed the generation of reactive oxygen species. The intracellular antioxidant enzymatic system and nonenzymatic system were also regulated by VNP and YGD. In addition, it was confirmed that partial auxo‐action between peptides and phenols appeared mostly in chemical assays. The findings above might indicate that VNP and YGD are potent natural antioxidants in Jiupei even in Baijiu through distillation process and lay the foundation for illustrating the interactions among different functional substances in Baijiu.
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- 2019
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15. Enorma shizhengliae sp. nov. and Eggerthella guodeyinii sp. nov., two new members of the family Coriobacteriaceae
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Xiaoyan Zhang, Lianfeng Li, Jianguo Xu, Ying Huang, Yuanmeihui Tao, Han Zheng, Xuelian Luo, Gui Zhang, Shan Lu, Yajun Ge, Tingting Yuan, Dong Jin, Xin-He Lai, and Jing Yang
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chemistry.chemical_classification ,0303 health sciences ,Strain (chemistry) ,biology ,Phylogenetic tree ,030306 microbiology ,Family Coriobacteriaceae ,Fatty acid ,General Medicine ,16S ribosomal RNA ,biology.organism_classification ,Microbiology ,03 medical and health sciences ,chemistry ,Taxonomy (biology) ,Eggerthella sinensis ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,Eggerthella - Abstract
Four obligatory anaerobic, Gram-stain-positive, non-motile and rod-shaped organisms (HF-1365T, HF-1362, HF-1101T and HF-4214) were isolated from faecal samples of healthy Chinese subjects. Results of 16S rRNA gene sequence analyses showed that these isolates belong to the genera Enorma (strains HF-1365T and HF-1362) and Eggerthella (strains HF-1101T and HF-4214), closest to Enorma massiliensis (both 98.6 %) and Eggerthella sinensis (98.0 and 97.8 %), respectively. The whole genome sequences of strains HF-1365T and HF-1101T were 2.3 and 4.2 Mb in size with 61.7 and 66.2 mol% DNA G+C content, respectively. The average nucleotide identity and digital DNA–DNA hybridization values indicated that strains HF-1365T and HF-1101T represent novel species in the genera Enorma and Eggerthella . Major fatty acid constituents (>10 %) of strains HF-1365T and HF-1362 were C12 : 0 (24.7 and 23.9 %), C14 : 0 (21.9 and 20.6 %) and summed feature 1 (C15 : 1iso H/C13 : 0 3OH; 12.8 and 10.8 %); those of strains HF-1101T and HF-4214 were C18 : 1 ω9c (32.4 and 33.1 %) and C16 : 0 (13.9 and 14.0 %). Strain HF-1365T had phospholipid, glycolipid, lipid and phosphoglycolipid without any known quinones, while strain HF-1101T had diphosphatidylglycerol as the major polar lipid and MK-7 (80.7 %) as the predominant quinone. On the basis of their phylogenetic and phenotypic characteristics, strains HF-1365T and HF-1101T represent two distinct species, respectively, in the genera Enorma and Eggerthella , for which the names Enorma shizhengliae sp. nov. (type strain HF-1365T=CGMCC 1.17435T=GDMCC 1.1705T=JCM 33601T) and Eggerthella guodeyinii sp. nov. (type strain HF-1101T=CGMCC 1.17436T=GDMCC 1.1668T=JCM 33773T) are proposed.
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- 2021
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16. Is higher ambient temperature associated with acute appendicitis hospitalizations? A case-crossover study in Tongling, China
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Yuxuan Li, Xuelian Luo, Yudong Wu, Shuangshuang Yan, Yunfeng Liang, Xiaoyu Jin, Xiaoni Sun, Lu Mei, Chao Tang, Xiangguo Liu, Yangyang He, Weizhuo Yi, Qiannan Wei, Rubing Pan, Jian Cheng, and Hong Su
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Adult ,Male ,Atmospheric Science ,China ,Cross-Over Studies ,Ecology ,Health, Toxicology and Mutagenesis ,Temperature ,Appendicitis ,Hospitalization ,Young Adult ,Acute Disease ,Humans ,Female - Abstract
Existing studies suggested that ambient temperature may affect the attack of acute appendicitis. However, the identification of the quantitative effect and vulnerable populations are still unknown. The purposes of this study were to quantify the impact of daily mean temperature on the hospitalization of acute appendicitis and clarify vulnerable groups, further guide targeted prevention of acute appendicitis in Tongling. Daily data of cases and meteorological factors were collected in Tongling, China, during 2015-2019. Time stratified case-crossover design and conditional logistic regression model were used to evaluate the odds ratio (OR) of ambient temperature on hospitalizations for acute appendicitis. Stratified analyses were performed by sex, age, and marital status. The odds ratio (OR) of hospitalizations for acute appendicitis increased by 1.6% for per 1 ℃ rise in mean temperature at lag3[OR = 1.016, 95% confidence interval (CI): 1.004-1.028]. In addition, our results suggest it is in the women that increased ambient temperature is more likely to contribute to acute appendicitis hospitalizations; we also found that the married are more susceptible to acute appendicitis hospitalizations due to increased ambient temperature than the unmarried; people in the 21-40 years old are more sensitive to ambient temperature than other age groups. The significant results of the differences between the subgroups indicate that the differences between the groups are all statistically significant. The elevated ambient temperatures increased the risk of hospitalizations for acute appendicitis. The females, married people, and patients aged 21-40 years old were more susceptible to ambient temperature. These findings suggest that more attention should be paid to the impact of high ambient temperature on acute appendicitis in the future.
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- 2021
17. Bacteroides luhongzhouii sp. nov. and Bacteroides zhangwenhongii sp. nov., isolated from human faeces
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Yajun Ge, Xiaoyan Zhang, Jianguo Xu, Dong Jin, Han Zheng, Gui Zhang, Xuelian Luo, Xin-He Lai, Shan Lu, Ji Pu, Ying Huang, and Jing Yang
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0106 biological sciences ,0301 basic medicine ,chemistry.chemical_classification ,biology ,Fatty acid ,Bacteroides xylanisolvens ,General Medicine ,biology.organism_classification ,16S ribosomal RNA ,010603 evolutionary biology ,01 natural sciences ,Microbiology ,03 medical and health sciences ,030104 developmental biology ,chemistry ,Taxonomy (biology) ,Bacteroides ,Gene ,Ecology, Evolution, Behavior and Systematics ,Feces ,Bacteroides finegoldii - Abstract
Four unknown strains, characterized as Gram-stain-negative, strictly anaerobic, non-motile and rod-shaped, were isolated from fresh faeces of healthy humans in PR China. Pairwise sequence comparisons of the 16S rRNA genes showed that these isolates were separated into two clusters. Cluster I (strains HF-5141T and HF-106) was most closely related to Bacteroides xylanisolvens XB1AT (98.0–98.3 % similarity) and Bacteroides ovatus ATCC 8483T (97.3–97.5 %), whereas cluster II (strains HF-5287T and HF-5300) exhibited a similarity range of 96.8–97.0 % to Bacteroides finegoldii JCM 13345T, 96.7–96.9 % to Bacteroides faecis MAJ27T and 96.4–96.5 % to Bacteroides xylanisolvens XB1AT. The DNA G+C contents of type strains HF-5141T and HF-5287T were 41.5 and 42.6 mol%, respectively. These strains had anteiso-C15 : 0 as the major cellular fatty acid, MK-9 and MK-11 as the predominant respiratory quinones, and phosphatidylethanolamine, aminophospholipids and phospholipids as major polar lipids, which is typical for members of the genus Bacteroides . However, the average nucleotide identity and digital DNA–DNA hybridization values, accompanied by different phenotypic and biochemical characteristics, distinguished them from their corresponding closest relatives as well as from other recognized members of the genus Bacteroides . Therefore, strains HF-5141T and HF-5287T represent two novel species in the genus Bacteroides , for which the names Bacteroides luhongzhouii sp. nov. and Bacteroides zhangwenhongii sp. nov. are proposed, with HF-5141T (=CGMCC 1.16787T=GDMCC 1.1591T=JCM 33480T) and HF-5287T (=CGMCC 1.16724T=GDMCC 1.1590T=JCM 33481T) as type strains.
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- 2021
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18. Microbacterium caowuchunii sp. nov. and Microbacterium lushaniae sp. nov., isolated from plateau pika (Ochotona curzoniae) on the Qinghai–Tibet Plateau of PR China
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Junqin Li, Xuelian Luo, Zhi Tian, Ying Huang, Xin-He Lai, Gui Zhang, Dong Jin, Ji Pu, Jing Yang, Suping Wang, and Jianguo Xu
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biology ,Ochotona curzoniae ,Microbacterium ,Microbacterium ginsengisoli ,General Medicine ,medicine.disease_cause ,biology.organism_classification ,16S ribosomal RNA ,Microbacterium oleivorans ,Microbiology ,Microbacterium radiodurans ,Microbacterium rhizomatis ,medicine ,Ecology, Evolution, Behavior and Systematics ,Microbacterium hatanonis - Abstract
Four novel bacterial strains (ST-M6T, L-033, L-031T and Z-333) were isolated from the intestinal contents of plateau pikas (Ochotona curzoniae) collected on the Qinghai–Tibet Plateau, PR China. Cells were aerobic, non-motile, Gram-stain-positive, catalase-positive, oxidase-negative, capsuled and short-rod-shaped. Phylogenetic analyses based on the 16S rRNA gene sequences and 387 core genes indicated that the four isolates belong in the genus Microbacterium and clearly separate from recognized species. The two type strains (ST-M6T and L-031T) shared low 16S rRNA similarity, average nucleotide identity values and digital DNA–DNA hybridization relatedness with their phylogenetic neighbours ( Microbacterium ginsengisoli DSM 18659T, Microbacterium hatanonis DSM 19179T, Microbacterium rhizomatis JCM 30598T, Microbacterium radiodurans CCTCC M208212T, Microbacterium oleivorans DSM 16091T and Microbacterium arborescens DSM 20754T). The genomic DNA G+C contents of strains ST-M6T and L-031T were 70.4 and 70.7 mol%, respectively. The major cellular fatty acids of strain ST-M6T were anteiso-C15 : 0, anteiso-C17 : 0 and iso-C16 : 0, in contrast to anteiso-C17 : 0, anteiso-C15 : 0 and anteiso-C17 : 1 ω9c of strain L-031T. Both type strains (ST-M6T and L-031T) were glycolate test positive and shared the following common features: MK-11 and MK-12 as major menaquinones; rhamnose, ribose, mannose and galactose as major cell-wall sugars; diphosphatidylglycerol, phosphatidylglycerol and two glycolipids as polar lipids; and ornithine, alanine, glycine and glutamic acid as cell-wall amino acids. Comparing the phenotypic, phylogenetic and chemotaxonomic features of the four strains and their related taxa, strains ST-M6T and L-031T represent two novel species of the genus Microbacterium , for which the names Microbacterium caowuchunii sp. nov. (type strain ST-M6T=CGMCC 1.16364T=DSM 104058T) and Microbacterium lushaniae sp. nov. (type strain L-031T =CGMCC 1.16363T=DSM 106170T) are proposed.
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- 2021
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19. Characterization and comparative study of the key odorants in Caoyuanwang mild-flavor style Baijiu using gas chromatography-olfactometry and sensory approaches
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Huifeng Li, Jihong Wu, Mingquan Huang, Siqi Luo, Hehe Li, Xiaotao Sun, Yuezhang Ming, Youming Li, Xuelian Luo, and Juan Wang
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Adult ,Male ,China ,Ethyl pentanoate ,Ethyl acetate ,01 natural sciences ,Gas Chromatography-Mass Spectrometry ,Analytical Chemistry ,chemistry.chemical_compound ,Young Adult ,0404 agricultural biotechnology ,Olfactometry ,Humans ,Ethyl lactate ,Aroma ,Flavor ,Hexanoic acid ,Volatile Organic Compounds ,Chromatography ,biology ,Chemistry ,Alcoholic Beverages ,010401 analytical chemistry ,food and beverages ,04 agricultural and veterinary sciences ,General Medicine ,biology.organism_classification ,040401 food science ,0104 chemical sciences ,Odorants ,Female ,Dimethyl trisulfide ,Food Science - Abstract
Caoyuanwang Baijiu (CYW), a mild-flavor style Baijiu (MSB), is popular in northern China. However, there is a lack of studies reporting its aroma-active components. The aroma compounds of five CYW samples were analyzed using gas chromatography-olfactory-mass spectrometry coupled with aroma extraction dilution analysis. Fifty-five aroma-active compounds were identified in CYW, of which 27 had odor activity values ≥ 1. Reconstituted models successfully simulated the aroma profiles of CYW. The omission tests elucidated that β-damascenone, dimethyl trisulfide, ethyl pentanoate, butanoic acid, ethyl acetate, 3-methylbutanal, ethyl lactate, hexanoic acid, γ-nonalactone, 3-hydroxy-2-butanone, ethyl butanoate, 1-propanol, 4-(ethoxymethyl)-2-methoxy-phenol, and vanillin were key odorants in CYW. The addition test confirmed the significant influence of dimethyl trisulfide on Chen-aroma note. Nine key odorants were identified as the differential quality-markers, and 85.71% key odorants were predicted using the partial least square regression (PLSR) analysis, indicating the applicability of PLSR in selecting the target compounds for omission tests.
- Published
- 2020
20. Author response: Cryo-EM structure of VASH1-SVBP bound to microtubules
- Author
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Haishan Gao, Xuelian Luo, Hongtao Yu, Zhubing Shi, Luke M. Rice, Faxiang Li, Yang Li, and Xuecheng Ye
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Materials science ,Microtubule ,Cryo-electron microscopy ,Biophysics - Published
- 2020
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21. ADAMTS12 acts as a cancer promoter in colorectal cancer via activating the Wnt/β-catenin signaling pathway
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Xuelian Luo, Chunxue Li, Bin Huang, Zhaoyang Zhong, Yi Deng, and Xiangfeng Wang
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0301 basic medicine ,Tissue microarray ,Cell growth ,Colorectal cancer ,ADAMTS ,Wnt signaling pathway ,General Medicine ,Biology ,medicine.disease ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Cyclin D1 ,030220 oncology & carcinogenesis ,Cancer cell ,Cancer research ,medicine ,Original Article ,Signal transduction - Abstract
Background ADAMTS12, a member of the ADAMTS family, is reported to be associated with the clinic outcome of colorectal cancer (CRC) patients. However, the functions and precise mechanism in CRC progression have yet to be fully understood. Methods By analyzing The Cancer Genome Atlas (TCGA) database, we examined the mRNA level of ADAMTS12 and assessed the prognostic value of ADAMTS12 in CRC patients using a tissue microarray containing 41 CRC patient samples. Cell Counting Kit-8 (CCK-8), colony formation, and transwell assays were used to quantify the impact of ADAMTS12 on cell proliferation and migration in ADAMTS12-overexpressing and ADAMTS12-deficient cell lines. The signaling pathways that ADAMTS12 mediated were identified by dual-luciferase reporter assays, and confirmed by western blotting and quantitative teal-time polymerase chain reaction (qRT-PCR). Results The ADAMTS12 mRNA level was upregulated in CRC tissues, and CRC patients with a high level of ADAMTS12 showed worse prognosis when compared with the patients with a low level of ADAMTS12. In vitro functional assays demonstrated that overexpression of ADAMTS12 significantly boosted cell proliferation and migration while ADAMTS12 deficiency remarkably impaired both tumor cell behaviors. Mechanical studies further verified that ADAMTS12 overexpression enhanced the transcriptional activity of β-catenin in the Wnt/β-catenin signaling pathway. In the ADAMTS12-deficient context, the downstream gene expression of myc and cyclin D1 was significantly reduced compared with that in wild-type cancer cells. Conclusions ADAMTS12 fulfills the tumor-promotor role by activating Wnt/β-catenin signaling pathway in colon cells and may represent a new option in CRC target treatment.
- Published
- 2020
22. Anti-inflammatory Mechanism Involved in 4-Ethylguaiacol-Mediated Inhibition of LPS-Induced Inflammation in THP-1 Cells
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Mouming Zhao, Xuelian Luo, Yunsong Jiang, Dongrui Zhao, Jinyuan Sun, and Hehe Li
- Subjects
Lipopolysaccharides ,0106 biological sciences ,NF-E2-Related Factor 2 ,THP-1 Cells ,medicine.drug_class ,Anti-Inflammatory Agents ,Inflammation ,Pharmacology ,01 natural sciences ,Monocytes ,Anti-inflammatory ,Proinflammatory cytokine ,chemistry.chemical_compound ,Immune system ,medicine ,Humans ,THP1 cell line ,Chemistry ,Alcoholic Beverages ,Guaiacol ,010401 analytical chemistry ,NF-kappa B ,NF-κB ,General Chemistry ,NFKB1 ,0104 chemical sciences ,Toll-Like Receptor 4 ,Blot ,medicine.symptom ,General Agricultural and Biological Sciences ,010606 plant biology & botany - Abstract
4-Ethylguaiacol, a common aroma compound of baijiu (a traditional Chinese alcoholic beverage), was assessed for its potential anti-inflammatory effects in an LPS-induced THP-1 cell model. To characterize the effect of 4-ethylguaiacol on the LPS-induced inflammatory response, the mRNA and protein expression of the TLR4-MAPKs-NF-κB-IκBα-AP-1, Nrf2-HO-1, and AMPK-SIRT1 pathways were monitored by ELISA, real-time PCR, and Western blotting. On the basis of the result, 4-ethylguaiacol exerted anti-inflammatory effects at doses of 10, 100, and 500 μM (the concentration of 4-ethylguaiacol in gujinggong baijiu is in the range of 1044 ± 44 to 1661 ± 63 μg/L) and significantly mitigated LPS-induced inflammation via activation of the Nrf2-HO-1 and AMPK-SIRT1 pathways and inhibition of NF-κB and AP-1 activation, thereby markedly inhibiting the activation of inflammasomes and down-regulating the production of inflammatory cytokines. These results indicated that 4-ethylguaiacol could reverse LPS-induced inflammatory responses and is a natural, potent anti-inflammatory component in baijiu.
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- 2019
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23. Cryo-EM structure of VASH1-SVBP bound to microtubules
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Xuecheng Ye, Haishan Gao, Xuelian Luo, Zhubing Shi, Yang Li, Hongtao Yu, Luke M. Rice, and Faxiang Li
- Subjects
Cryo-electron microscopy ,QH301-705.5 ,Protein Conformation ,Science ,Structural Biology and Molecular Biophysics ,vasohibin ,Cell Cycle Proteins ,cryo-electron microscopy ,macromolecular substances ,Crystallography, X-Ray ,Microtubules ,General Biochemistry, Genetics and Molecular Biology ,Microtubule ,Tubulin ,Detyrosination ,Humans ,Biology (General) ,Mitosis ,detyrosination ,posttranslational modification ,General Immunology and Microbiology ,biology ,Chemistry ,General Neuroscience ,Molecular biophysics ,Cryoelectron Microscopy ,E. coli ,Active site ,General Medicine ,Carboxypeptidase ,Structural biology ,biology.protein ,Biophysics ,Medicine ,Tyrosine ,Carrier Proteins ,HeLa Cells ,Research Article ,microtubule - Abstract
The dynamic tyrosination-detyrosination cycle of α-tubulin regulates microtubule functions. Perturbation of this cycle impairs mitosis, neural physiology, and cardiomyocyte contraction. The carboxypeptidases vasohibins 1 and 2 (VASH1 and VASH2), in complex with the small vasohibin-binding protein (SVBP), mediate α-tubulin detyrosination. These enzymes detyrosinate microtubules more efficiently than soluble αβ-tubulin heterodimers. The structural basis for this substrate preference is not understood. Using cryo-electron microscopy (cryo-EM), we have determined the structure of human VASH1-SVBP bound to microtubules. The acidic C-terminal tail of α-tubulin binds to a positively charged groove near the active site of VASH1. VASH1 forms multiple additional contacts with the globular domain of α-tubulin, including contacts with a second α-tubulin in an adjacent protofilament. Simultaneous engagement of two protofilaments by VASH1 can only occur within the microtubule lattice, but not with free αβ heterodimers. These lattice-specific interactions enable preferential detyrosination of microtubules by VASH1.
- Published
- 2020
24. Author response: STK25 suppresses Hippo signaling by regulating SAV1-STRIPAK antagonism
- Author
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Xuelian Luo, Lisheng Ni, and Sung Jun Bae
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Hippo signaling ,Biology ,Antagonism ,Cell biology - Published
- 2020
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25. Marmota himalayana in the Qinghai–Tibetan plateau as a special host for bi-segmented and unsegmented picobirnaviruses
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Xuelian Luo, Shan Lu, Jianguo Xu, Dong Jin, Jing Yang, and Shusheng Wu
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0301 basic medicine ,Epidemiology ,Immunology ,Zoology ,Animals, Wild ,Genome, Viral ,Picobirnavirus ,Biology ,Tibet ,Microbiology ,Host Specificity ,Article ,Qinghai tibetan plateau ,Feces ,03 medical and health sciences ,Viral genetics ,Virology ,Drug Discovery ,Animals ,Humans ,Phylogeny ,geography ,Plateau ,geography.geographical_feature_category ,Host (biology) ,Sequence Analysis, DNA ,General Medicine ,Marmota himalayana ,biology.organism_classification ,030104 developmental biology ,Infectious Diseases ,Marmota ,RNA, Viral ,Parasitology ,Host specificity - Abstract
Wildlife has been considered the main source of novel viruses causing emerging infectious diseases. Marmota himalayana is endemic to the Qinghai–Tibetan Plateau, China. Here, based on a high-throughput method using Illumina RNA sequencing, we studied the RNA virome of M. himalayana and discovered multiple novel viruses, especially picobirnaviruses (PBVs), which have a bi-segmented genome and belong to the family Picobirnaviridae. A total of 63% of the viral contigs corresponded to PBVs, comprising 274 segment 1 and 56 segment 2 sequences. Unexpectedly, four unsegmented PBV genomes were also detected and confirmed by PCR and resequencing. According to the phylogenetic analysis, the following nine PBV assortment types are proposed: C1:GI, C2:GIV, C4:GI, C4:GV, C5:GI, C7:GI, C8:GIV, C8:GV and C8:GII. We hypothesize a model of segmentation for the PBV genome, mediated by a 6-bp direct repeat sequence, GAAAGG. The model is supported by detection of the segmentation-associated sequence GAAAGG not only in the 5′ untranslated regions of segment 1 (221 in 289) and segment 2 (57 in 80) of bi-segmented PBVs but also in the 5′ untranslated regions and junction sequences between the capsid and RdRp genes of unsegmented PBVs. Therefore, with RNA sequencing, we found an unexpected biodiversity of PBVs in M. himalayana, indicating that M. himalayana is a special host for PBVs. We also proposed a putative model of how bi-segmented PBVs could be converted into unsegmented PBVs, which sheds new light on the processes of RNA virus genome evolution.
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- 2018
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26. Studies on the key odorants in Maopu buckwheat finished Baijiu and the effect of tartary buckwheat extract on its flavor
- Author
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Jihong Wu, Jiaying Huo, Mingquan Huang, Weiyi Meng, Jinglin Zhang, Xiang Yi, Qiang Yang, Xuelian Luo, Qian Zhang, Juan Wang, and Yuancai Liu
- Subjects
Hexanoic acid ,biology ,Extraction (chemistry) ,Ethyl hexanoate ,Multiple methods ,biology.organism_classification ,chemistry.chemical_compound ,chemistry ,Odor ,Food science ,Dimethyl trisulfide ,Flavor ,Aroma ,Food Science - Abstract
Maopu buckwheat finished Baijiu (MBFB), a unique Chinese Baijiu, is mainly composed of base Baijiu and tartary buckwheat extract (TBE). However, there is a lack of studies reporting its flavor. In this study, the key odorants in MBFB were characterized for the first time using a sensomics approach. Forty-nine odorants were identified using gas chromatography-mass spectrometry/olfactory analysis, coupled with aroma extraction dilution analysis. They were quantified using multiple methods and their odor activity values were calculated. Ethyl hexanoate, ethyl butanoate, butanoic acid, hexanoic acid, dimethyl trisulfide, p-cresol, β-damascenone, and 3-methylbutanal were confirmed as the key odorants in MBFB using recombination and omission experiments. Furthermore, the interaction between TBE and odorants were revealed that TBE enhanced the sweet notes, while it inhibited the alcoholic, acidic, and fruity notes, which might be because TBE promoted the volatility of most esters, but inhibited the volatilities of butanoic acid and hexanoic acid.
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- 2022
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27. Cytoprotective effects of a tripeptide from Chinese Baijiu against AAPH-induced oxidative stress in HepG2 cells via Nrf2 signaling
- Author
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Mingquan Huang, Mouming Zhao, Xiaotao Sun, Baoguo Sun, Jinyuan Sun, Jihong Wu, Fuping Zheng, Hehe Li, and Xuelian Luo
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musculoskeletal diseases ,chemistry.chemical_classification ,Reactive oxygen species ,Antioxidant ,General Chemical Engineering ,medicine.medical_treatment ,04 agricultural and veterinary sciences ,General Chemistry ,Glutathione ,Tripeptide ,Pharmacology ,medicine.disease_cause ,Malondialdehyde ,040401 food science ,KEAP1 ,chemistry.chemical_compound ,0404 agricultural biotechnology ,chemistry ,medicine ,natural sciences ,Oxidative stress ,Intracellular - Abstract
Antioxidant peptides have been widely reported, whereas the intracellular antioxidant activity of a tripeptide (Pro-His-Pro, PHP), which was newly isolated and identified from Chinese Baijiu in our previous study, are still poorly understood. This study investigated the protective effects of PHP on 2,2′-azobis (2-methyl-propanimidamidine) dihydrochloride (AAPH)-induced oxidative stress in HepG2 cells and the involved molecular mechanisms. Pretreatment with PHP suppressed the generations of reactive oxygen species (ROS), malondialdehyde (MDA) and oxidized glutathione (GSSG), prevented a decrease in reduced glutathione (GSH), and up-regulated the activities of cellular antioxidant enzymes. Moreover, PHP treatment stimulated the mRNA and protein expression levels of antioxidant enzymes and nuclear factor E2 related factor 2 (Nrf2). Meanwhile, PHP markedly reduced the level of Kelch-like ECH-associated protein 1 (Keap1), suggesting that PHP effectively activated Nrf2/antioxidant response element (ARE)-mediated activity. These findings provide the first molecular basis for the health-promoting effects of PHP to prevent AAPH-induced oxidative stress.
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- 2018
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28. STK25 suppresses Hippo signaling by regulating SAV1-STRIPAK antagonism
- Author
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Xuelian Luo, Lisheng Ni, and Sung Jun Bae
- Subjects
0301 basic medicine ,Scaffold protein ,MST1 ,QH301-705.5 ,Science ,Cell Cycle Proteins ,human 293FT cell ,Protein Serine-Threonine Kinases ,Serine-Threonine Kinase 3 ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,0302 clinical medicine ,Escherichia coli ,Humans ,Hippo Signaling Pathway ,Protein Phosphatase 2 ,Biology (General) ,Phosphorylation ,Tissue homeostasis ,Cells, Cultured ,Hippo signaling pathway ,General Immunology and Microbiology ,Kinase ,Chemistry ,General Neuroscience ,human 293A cell ,Intracellular Signaling Peptides and Proteins ,Membrane Proteins ,General Medicine ,Protein phosphatase 2 ,Cell Biology ,Cell biology ,030104 developmental biology ,Hippo signaling ,030220 oncology & carcinogenesis ,Medicine ,Research Advance ,Signal Transduction ,Human - Abstract
The MST-LATS kinase cascade is central to the Hippo pathway that controls tissue homeostasis, development, and organ size. The PP2A complex STRIPAKSLMAP blocks MST1/2 activation. The GCKIII family kinases associate with STRIPAK, but the functions of these phosphatase-associated kinases remain elusive. We previously showed that the scaffolding protein SAV1 promotes Hippo signaling by counteracting STRIPAK (Bae et al., 2017). Here, we show that the GCKIII kinase STK25 promotes STRIPAK-mediated inhibition of MST2 in human cells. Depletion of STK25 enhances MST2 activation without affecting the integrity of STRIPAKSLMAP. STK25 directly phosphorylates SAV1 and diminishes the ability of SAV1 to inhibit STRIPAK. Thus, STK25 as the kinase component of STRIPAK can inhibit the function of the STRIPAK inhibitor SAV1. This mutual antagonism between STRIPAK and SAV1 controls the initiation of Hippo signaling.
- Published
- 2020
29. Beyond a Ribosomal RNA Methyltransferase, the Wider Role of MraW in DNA Methylation, Motility and Colonization in Escherichia coli O157:H7
- Author
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Xuefang Xu, Heng Zhang, Ying Huang, Yuan Zhang, Changde Wu, Pengya Gao, Zhongqiu Teng, Xuelian Luo, Xiaojing Peng, Xiaoyuan Wang, Dai Wang, Ji Pu, Hongqing Zhao, Xuancheng Lu, Shuangshuang Lu, Changyun Ye, Yuhui Dong, Ruiting Lan, and Jianguo Xu
- Subjects
intestine colonization ,Microbiology (medical) ,0303 health sciences ,DNA methylation ,Methyltransferase ,030306 microbiology ,Bisulfite sequencing ,lcsh:QR1-502 ,Promoter ,Methylation ,Biology ,Microbiology ,Molecular biology ,lcsh:Microbiology ,E. coli O157:H7 ,03 medical and health sciences ,MraW ,Differentially methylated regions ,motility ,Transcription (biology) ,Gene ,030304 developmental biology - Abstract
MraW is a 16S rRNA methyltransferase and plays a role in the fine-tuning of the ribosomal decoding center. It was recently found to contribute to the virulence of Staphylococcus aureus. In this study, we examined the function of MraW in Escherichia coli O157:H7 and found that the deletion of mraW led to decreased motility, flagellar production and DNA methylation. Whole-genome bisulfite sequencing showed a genome wide decrease of methylation of 336 genes and 219 promoters in the mraW mutant including flagellar genes. The methylation level of flagellar genes was confirmed by bisulfite PCR sequencing. Quantitative reverse transcription PCR results indicated that the transcription of these genes was also affected. MraW was furtherly observed to directly bind to the four flagellar gene sequences by electrophoretic mobility shift assay (EMSA). A common flexible motif in differentially methylated regions (DMRs) of promoters and coding regions of the four flagellar genes was identified. Reduced methylation was correlated with altered expression of 21 of the 24 genes tested. DNA methylation activity of MraW was confirmed by DNA methyltransferase activity assay in vitro and repressed by DNA methylation inhibitor 5-aza-2′-deoxycytidine (5-aza). In addition, the mraW mutant colonized poorer than wild type in mice. We also found that the expression of mraZ in the mraW mutant was increased confirming the antagonistic effect of mraW on mraZ. In conclusion, mraW was found to be a DNA methylase and have a wide-ranging effect on E. coli O157:H7 including motility and virulence in vivo via genome wide methylation and mraZ antagonism.
- Published
- 2019
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30. Neisseria weixii sp. nov., isolated from rectal contents of Tibetan Plateau pika (Ochotona curzoniae)
- Author
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Dong Jin, Xuelian Luo, Shan Lu, Gui Zhang, Xin-He Lai, Yanwen Xiong, Ji Pu, Zhihong Ren, Ying Huang, Jianguo Xu, Jing Yang, and Xiangning Bai
- Subjects
0106 biological sciences ,0301 basic medicine ,DNA, Bacterial ,China ,Ochotona curzoniae ,Coccus ,Neisseria flavescens ,Tibet ,010603 evolutionary biology ,01 natural sciences ,Microbiology ,03 medical and health sciences ,Phylogenetics ,RNA, Ribosomal, 16S ,Animals ,Pika ,Ecology, Evolution, Behavior and Systematics ,Phylogeny ,Base Composition ,biology ,Phylogenetic tree ,Fatty Acids ,Rectum ,General Medicine ,Lagomorpha ,Sequence Analysis, DNA ,biology.organism_classification ,16S ribosomal RNA ,Bacterial Typing Techniques ,030104 developmental biology ,Neisseria - Abstract
Three independent isolates (10022T, 10 009 and 10011) of a novel catalase-positive, Gram-stain-negative coccus in the genus Neisseria were obtained from the rectal contents of plateau pika on the Qinghai–Tibet Plateau, PR China. Based on 16S rRNA gene sequence analysis, our newly identified organisms were most closely related to Neisseria iguanae , Neisseria flavescens and Neisseria perflava with similarities ranging from 98.02 to 98.45 %, followed by seven other species in the genus Neisseria . Phylogenetic analysis based on 16S rRNA and rplF genes showed that our three novel isolates group with members of the genus Neisseria . Results of the average nucleotide identity (ANI) analysis confirmed that our isolates are of the same species, and the ANI values between type strain 10022T and other Neisseria species are 74.12–85.06 %, lower than the threshold range of 95–96 %. The major cellular fatty acids for our novel species are C16 : 0 and C16:1ω7c/C16:1ω6c, which along with their phenotypic characteristics can distinguish our isolates from other Neisseria species. On the basis of polyphasic analyses, our isolates are proposed to represent a novel species in genus Neisseria , with the name Neisseria weixii sp. nov. The type strain is 10022T (=DSM 103441T=CGMCC 1.15732T).
- Published
- 2019
31. Beyond a Ribosomal RNA Methyltransferase, the Wider Role of MraW in DNA Methylation, Motility and Colonization in
- Author
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Xuefang, Xu, Heng, Zhang, Ying, Huang, Yuan, Zhang, Changde, Wu, Pengya, Gao, Zhongqiu, Teng, Xuelian, Luo, Xiaojing, Peng, Xiaoyuan, Wang, Dai, Wang, Ji, Pu, Hongqing, Zhao, Xuancheng, Lu, Shuangshuang, Lu, Changyun, Ye, Yuhui, Dong, Ruiting, Lan, and Jianguo, Xu
- Subjects
E. coli O157:H7 ,intestine colonization ,MraW ,DNA methylation ,motility ,Microbiology ,Original Research - Abstract
MraW is a 16S rRNA methyltransferase and plays a role in the fine-tuning of the ribosomal decoding center. It was recently found to contribute to the virulence of Staphylococcus aureus. In this study, we examined the function of MraW in Escherichia coli O157:H7 and found that the deletion of mraW led to decreased motility, flagellar production and DNA methylation. Whole-genome bisulfite sequencing showed a genome wide decrease of methylation of 336 genes and 219 promoters in the mraW mutant including flagellar genes. The methylation level of flagellar genes was confirmed by bisulfite PCR sequencing. Quantitative reverse transcription PCR results indicated that the transcription of these genes was also affected. MraW was furtherly observed to directly bind to the four flagellar gene sequences by electrophoretic mobility shift assay (EMSA). A common flexible motif in differentially methylated regions (DMRs) of promoters and coding regions of the four flagellar genes was identified. Reduced methylation was correlated with altered expression of 21 of the 24 genes tested. DNA methylation activity of MraW was confirmed by DNA methyltransferase activity assay in vitro and repressed by DNA methylation inhibitor 5-aza-2′-deoxycytidine (5-aza). In addition, the mraW mutant colonized poorer than wild type in mice. We also found that the expression of mraZ in the mraW mutant was increased confirming the antagonistic effect of mraW on mraZ. In conclusion, mraW was found to be a DNA methylase and have a wide-ranging effect on E. coli O157:H7 including motility and virulence in vivo via genome wide methylation and mraZ antagonism.
- Published
- 2019
32. Structural basis of cohesin cleavage by separase
- Author
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Xuelian Luo, Zhonghui Lin, and Hongtao Yu
- Subjects
Models, Molecular ,0301 basic medicine ,Chromosomal Proteins, Non-Histone ,Cell Cycle Proteins ,Chaetomium ,Protein Serine-Threonine Kinases ,Crystallography, X-Ray ,Cleavage (embryo) ,Binding, Competitive ,PLK1 ,Article ,Substrate Specificity ,Chromosome segregation ,Structure-Activity Relationship ,03 medical and health sciences ,0302 clinical medicine ,Chromosome Segregation ,Proto-Oncogene Proteins ,Amino Acid Sequence ,Phosphorylation ,Separase ,Multidisciplinary ,Cohesin ,biology ,Protein Structure, Tertiary ,Cell biology ,Spindle apparatus ,Securin ,030104 developmental biology ,Biochemistry ,030220 oncology & carcinogenesis ,Chaperone (protein) ,Proteolysis ,biology.protein ,biological phenomena, cell phenomena, and immunity - Abstract
Accurate chromosome segregation requires timely dissolution of chromosome cohesion after chromosomes are properly attached to the mitotic spindle. Separase is absolutely essential for cohesion dissolution in organisms from yeast to man. It cleaves the kleisin subunit of cohesin and opens the cohesin ring to allow chromosome segregation. Cohesin cleavage is spatiotemporally controlled by separase-associated regulatory proteins, including the inhibitory chaperone securin, and by phosphorylation of both the enzyme and substrates. Dysregulation of this process causes chromosome missegregation and aneuploidy, contributing to cancer and birth defects. Despite its essential functions, atomic structures of separase have not been determined. Here we report crystal structures of the separase protease domain from the thermophilic fungus Chaetomium thermophilum, alone or covalently bound to unphosphorylated and phosphorylated inhibitory peptides derived from a cohesin cleavage site. These structures reveal how separase recognizes cohesin and how cohesin phosphorylation by polo-like kinase 1 (Plk1) enhances cleavage. Consistent with a previous cellular study, mutating two securin residues in a conserved motif that partly matches the separase cleavage consensus converts securin from a separase inhibitor to a substrate. Our study establishes atomic mechanisms of substrate cleavage by separase and suggests competitive inhibition by securin.
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- 2016
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33. Lats1/2 Sustain Intestinal Stem Cells and Wnt Activation through TEAD-Dependent and Independent Transcription
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Jennifer L. Cotton, Gopala K. Jarugumilli, Michael DeRan, Rui Li, Jordi Xiol, Xu Wu, Xuelian Luo, Randy L. Johnson, Y. Tony Ip, Lihua Julie Zhu, Junhao Mao, Qi Li, Yang Sun, Joyce Li, Andrew B. Leiter, Kyvan Dang, PuiYee Chan, Shun Liu, Lifang Ma, and Fernando D. Camargo
- Subjects
Adenomatous polyposis coli ,Protein Serine-Threonine Kinases ,03 medical and health sciences ,0302 clinical medicine ,Palmitoylation ,Transcription (biology) ,Neoplasms ,Genetics ,Humans ,Enhancer ,Transcription factor ,030304 developmental biology ,0303 health sciences ,biology ,Stem Cells ,Wnt signaling pathway ,Cell Biology ,Phosphoproteins ,Cell biology ,Intestines ,Hippo signaling ,biology.protein ,Molecular Medicine ,Stem cell ,030217 neurology & neurosurgery ,Protein Binding ,Transcription Factors - Abstract
Summary Intestinal homeostasis is tightly regulated by complex yet poorly understood signaling networks. Here, we demonstrate that Lats1/2, the core Hippo kinases, are essential to maintain Wnt pathway activity and intestinal stem cells. Lats1/2 deletion leads to loss of intestinal stem cells but drives Wnt-uncoupled crypt expansion. To explore the function of downstream transcriptional enhanced associate domain (TEAD) transcription factors, we identified a selective small-molecule reversible inhibitor of TEAD auto-palmitoylation that directly occupies its lipid-binding site and inhibits TEAD-mediated transcription in vivo. Combining this chemical tool with genetic and proteomics approaches, we show that intestinal Wnt inhibition by Lats deletion is Yes-associated protein (YAP)/transcriptional activator with PDZ-binding domain (TAZ) dependent but TEAD independent. Mechanistically, nuclear YAP/TAZ interact with Groucho/Transducin-Like Enhancer of Split (TLE) to block Wnt/T-cell factor (TCF)-mediated transcription, and dual inhibition of TEAD and Lats suppresses Wnt-uncoupled Myc upregulation and epithelial over-proliferation in Adenomatous polyposis coli (APC)-mutated intestine. Our studies highlight a pharmacological approach to inhibit TEAD palmitoylation and have important implications for targeting Wnt and Hippo signaling in human malignancies.
- Published
- 2019
34. Structural and Biochemical Analyses of the Core Components of the Hippo Pathway
- Author
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Lisheng, Ni and Xuelian, Luo
- Subjects
Models, Molecular ,Protein Conformation ,Cell Cycle Proteins ,Protein Serine-Threonine Kinases ,Serine-Threonine Kinase 3 ,Protein Refolding ,Enzyme Activation ,Structure-Activity Relationship ,Multiprotein Complexes ,Animals ,Humans ,Hippo Signaling Pathway ,Protein Interaction Domains and Motifs ,Protein Phosphatase 2 ,Carrier Proteins ,Biomarkers ,Protein Binding ,Signal Transduction - Abstract
The Hippo pathway controls organ size and maintains tissue homeostasis through a central MST-LATS kinase cascade. When Hippo signaling is on, activated MST1/2 partner with SAV1 to phosphorylate and activate the LATS1/2-MOB1 complexes, which in turn phosphorylate and inactivate YAP/TAZ transcription co-activators. This process halts the expression of Hippo-responsive genes, thereby inhibiting cell proliferation and promoting apoptosis. Our studies have shown that two core adaptor proteins MOB1 and SAV1 use distinctive mechanisms to enhance Hippo signaling. MOB1 promotes MST-dependent LATS activation through dynamic scaffolding and allosteric regulation. SAV1 promotes MST activation by antagonizing the PP2A phosphatase activity. Here we describe the detailed methods for the purification and crystallization of the MST2-SAV1 and pMOB1-LATS1 complexes, for assaying the SAV1-dependent inhibition of PP2A, and for analyzing LATS1 kinase activation using in vitro reconstitution.
- Published
- 2018
35. Structural and Biochemical Analyses of the Core Components of the Hippo Pathway
- Author
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Lisheng Ni and Xuelian Luo
- Subjects
0301 basic medicine ,Hippo signaling pathway ,Chemistry ,Kinase ,Autophosphorylation ,Signal transducing adaptor protein ,Protein phosphatase 2 ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Hippo signaling ,030220 oncology & carcinogenesis ,Phosphorylation ,Tissue homeostasis - Abstract
The Hippo pathway controls organ size and maintains tissue homeostasis through a central MST-LATS kinase cascade. When Hippo signaling is on, activated MST1/2 partner with SAV1 to phosphorylate and activate the LATS1/2-MOB1 complexes, which in turn phosphorylate and inactivate YAP/TAZ transcription co-activators. This process halts the expression of Hippo-responsive genes, thereby inhibiting cell proliferation and promoting apoptosis. Our studies have shown that two core adaptor proteins MOB1 and SAV1 use distinctive mechanisms to enhance Hippo signaling. MOB1 promotes MST-dependent LATS activation through dynamic scaffolding and allosteric regulation. SAV1 promotes MST activation by antagonizing the PP2A phosphatase activity. Here we describe the detailed methods for the purification and crystallization of the MST2-SAV1 and pMOB1-LATS1 complexes, for assaying the SAV1-dependent inhibition of PP2A, and for analyzing LATS1 kinase activation using in vitro reconstitution.
- Published
- 2018
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36. Neisseria chenwenguii sp. nov. isolated from the rectal contents of a plateau pika (Ochotona curzoniae)
- Author
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Ying Huang, Shan Lu, Xiangning Bai, Xuelian Luo, Ji Pu, Xin He Lai, Dong Jin, Jianguo Xu, Yanwen Xiong, Cuixia Chen, Gui Zhang, and Jing Yang
- Subjects
0106 biological sciences ,0301 basic medicine ,DNA, Bacterial ,Ochotona curzoniae ,Coccus ,Tibet ,010603 evolutionary biology ,01 natural sciences ,Microbiology ,Agar plate ,03 medical and health sciences ,Chocolate agar ,chemistry.chemical_compound ,RNA, Ribosomal, 16S ,Animals ,Molecular Biology ,Phylogeny ,Base Composition ,Original Paper ,biology ,Fatty Acids ,Rectum ,General Medicine ,Lagomorpha ,Average nucleotide identity ,biology.organism_classification ,16S ribosomal RNA ,Novel species ,Bacterial Typing Techniques ,030104 developmental biology ,chemistry ,Neisseria ,MacConkey agar ,Nutrient agar - Abstract
Two Gram-stain negative, catalase positive, coccus shaped bacteria, designated 10023T and 10010, were isolated from the rectal contents of a plateau pika (Ochotona curzoniae) in Qinghai–Tibet Plateau, China. Based on 16S rRNA gene sequence analysis, phylogenetic trees showed that these two isolates (10023T, 10010) group with members of the genus Neisseria. Additionally, these two isolates exhibited high 16S rRNA gene sequence similarity with Neisseria zalophi CSL 7565T (96.98%), Neisseria wadsworthii WC 05-9715T (96.92%) and Neisseria canis ATCC 14687T (96.79%). Further phylogenetic analysis based on the rplF gene showed that these two novel strains can be easily discriminated from phylogenetically closely related species. Optimal growth was found to occur on BHI agar with 5% defibrinated sheep blood at 37 °C and growth was also observed on nutrient agar, Columbia blood agar and chocolate agar plates; however, growth was not observed on MacConkey agar after 7 days. The major cellular fatty acids of these strains were identified as C16:0 and C16:1ω7c/C16:1ω6c. The complete genome size of the type strain 10023T is 2,496,444 bp, with DNA G+C content of 54.0 mol %. The average nucleotide identity values were 73.5–79.3% between isolate 10023T and reference Neisseria spp. Based on polyphasic analysis, these isolates (10023T and 10010) are considered to represent a novel species in the genus Neisseria, for which the name Neisseria chenwenguii sp. nov. is proposed. The type strain is 10023T (= DSM 103440T = CGMCC 1.15736T). Electronic supplementary material The online version of this article (10.1007/s10482-019-01234-2) contains supplementary material, which is available to authorized users.
- Published
- 2018
37. Is the serious ambient air pollution associated with increased admissions for schizophrenia?
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Yanwu Zhang, Qiang Cheng, Lijun Bai, Xuelian Luo, Hong Su, Jun Duan, Jiaojiao Gao, Zihan Xu, Heng Zhang, and Shusi Wang
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Distributed lag ,Adult ,Male ,China ,Environmental Engineering ,Air pollution ,Subgroup analysis ,010501 environmental sciences ,medicine.disease_cause ,complex mixtures ,01 natural sciences ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Environmental health ,Air Pollution ,Environmental Chemistry ,Medicine ,Psychiatric hospital ,Humans ,Young adult ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Pollutant ,Air Pollutants ,business.industry ,Environmental exposure ,Environmental Exposure ,medicine.disease ,Pollution ,respiratory tract diseases ,Hospitalization ,Schizophrenia ,Female ,Particulate Matter ,business ,030217 neurology & neurosurgery - Abstract
Background Much of the research has shown an increased risk of psychiatric disorders in association with elevated exposure to air pollution, such as NO2, PM10 and SO2. However, few studies investigate the effect of these air pollution on the risk of schizophrenia admissions and the lagged effect among different subgroups. Methods A distributed lag non-linear model (DLNM) combined with a Poisson generalized linear regression model was applied to analyzing the relationship between schizophrenia and air pollution. At first, according to the minimum AIC criterion, we discussed the lagged effect of NO2, PM10 and SO2 for 5 days, 4 days and 10 days, respectively. Then, we chose benchmarks as references (25th) to conduct comparisons with different levels of pollutant concentrations (90th and 95th). All patients were retrieved from the Psychiatric Hospital of TongLing (n = 3469) from January 2014 to December 2016. Daily air pollutants and meteorological data were collected from the Chinese national air quality monitoring (NAQM) and Meteorological Bureau. Subgroup analysis was conducted by gender (male and female), age (0–19 ages, 20–39 ages, 40–59 ages and ≥ 60 ages) and occupation (farmer, worker and unemployed). Results The effects of the three air pollutants were statistically significant to schizophrenia admissions. We found that NO2 and PM10 have short-term effects of 4 days and 3 days (NO2: lag 0–4 RR, 1.84(95% CI: 1.49–2.27), PM10: lag 0–3 RR, 1.97(95%CI: 1.57–2.36)), respectively. SO2 had longer effects for 10 days (SO2: lag 0–10 RR, 2.93(95%CI: 2.10–4.10)). Additionally, it significantly increased the risk of schizophrenia episode in subjects with male, 20–59 ages, farmer and worker. Conclusion We find adverse effects of ambient air pollutants on schizophrenia admissions in TongLing, China, which may provide valuable information for the policy makers and local health authorities to conduct effective intervention of air pollution on schizophrenia.
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- 2018
38. Cytoprotective effects of a tripeptide from Chinese Baijiu against AAPH-induced oxidative stress in HepG2 cells
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Jihong, Wu, Baoguo, Sun, Xuelian, Luo, Mouming, Zhao, Fuping, Zheng, Jinyuan, Sun, Hehe, Li, Xiaotao, Sun, and Mingquan, Huang
- Abstract
Antioxidant peptides have been widely reported, whereas the intracellular antioxidant activity of a tripeptide (Pro-His-Pro, PHP), which was newly isolated and identified from Chinese Baijiu in our previous study, are still poorly understood. This study investigated the protective effects of PHP on 2,2'-azobis (2-methyl-propanimidamidine) dihydrochloride (AAPH)-induced oxidative stress in HepG2 cells and the involved molecular mechanisms. Pretreatment with PHP suppressed the generations of reactive oxygen species (ROS), malondialdehyde (MDA) and oxidized glutathione (GSSG), prevented a decrease in reduced glutathione (GSH), and up-regulated the activities of cellular antioxidant enzymes. Moreover, PHP treatment stimulated the mRNA and protein expression levels of antioxidant enzymes and nuclear factor E2 related factor 2 (Nrf2). Meanwhile, PHP markedly reduced the level of Kelch-like ECH-associated protein 1 (Keap1), suggesting that PHP effectively activated Nrf2/antioxidant response element (ARE)-mediated activity. These findings provide the first molecular basis for the health-promoting effects of PHP to prevent AAPH-induced oxidative stress.
- Published
- 2018
39. Genome-wide analysis of synonymous codon usage in Huaiyangshan virus and other bunyaviruses
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Dong Jin, Changyun Ye, Jianguo Xu, Qingzhen Liu, Yanwen Xiong, and Xuelian Luo
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Genetics ,Phylogenetic tree ,Host (biology) ,Uukuniemi virus ,Genome wide analysis ,General Medicine ,Biology ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Genome ,Virology ,Virus ,Phlebovirus ,Codon usage bias - Abstract
Huaiyangshan virus (HYSV) is a newly discovered bunyavirus, which is transmitted by ticks and causes hemorrhagic fever-like illness in human. The interplay of codon usage among viruses and their hosts is expected to affect viral survival, evasion from host's immune system and evolution. However, little is known about the codon usage in HYSV genome. In the present study, we analyzed synonymous codon usage in 120 available full-length HYSV sequences and performed a comparative analysis of synonymous codon usage patterns in HYSV and 42 other bunyaviruses. The relative synonymous codon usage (RSCU) analysis showed that the preferred synonymous codons were G/C-ended. A comparative analysis of RSCU between HYSV and its hosts reflected that codon usage patterns of HYSV were mostly coincident with that of its hosts. Our data suggested that although mutational bias dominated codon usage, patterns of codon usage in HYSV were also under the influence of nature selection. Phylogenetic analysis based on RSCU values across different HYSV strains and 42 other bunyaviruses suggested that codon usage pattern in HYSV was the most similar with that of Uukuniemi virus among these bunyaviruses and that viruses belonged to Phlebovirus showed a diversity of codon usage patterns.
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- 2015
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40. Structural Characterization of a Tetrapeptide from Sesame Flavor-Type Baijiu and Its Preventive Effects against AAPH-Induced Oxidative Stress in HepG2 Cells
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Jihong Wu, Xuelian Luo, Mouming Zhao, Mingquan Huang, Baoguo Sun, and Jiaying Huo
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Antioxidant ,medicine.medical_treatment ,Amidines ,medicine.disease_cause ,Antioxidants ,Mass Spectrometry ,Sesamum ,Superoxide dismutase ,chemistry.chemical_compound ,0404 agricultural biotechnology ,medicine ,Humans ,chemistry.chemical_classification ,Glutathione Peroxidase ,biology ,Tetrapeptide ,Chemistry ,Plant Extracts ,Superoxide Dismutase ,Glutathione peroxidase ,04 agricultural and veterinary sciences ,General Chemistry ,Glutathione ,Hep G2 Cells ,Malondialdehyde ,Catalase ,040401 food science ,Flavoring Agents ,Oxidative Stress ,Biochemistry ,biology.protein ,General Agricultural and Biological Sciences ,Peptides ,Reactive Oxygen Species ,Oxidative stress - Abstract
Peptides are rarely reported from Chinese Baijiu (Chinese liquor) because they are often present in very low concentrations in the complex matrix. A tetrapeptide, Ala-Lys-Arg-Ala (AKRA), was recently identified by high-performance liquid chromatography and quadrupole-time-of-flight-mass spectrometry (HPLC-Q-TOF-MS) from sesame flavor-type Baijiu at a concentration of 8.497 ± 0.753 μg/L (P > 0.05), and this tetrapeptide showed preventive effects against 2,2'-azobis(2-methylpropanimidamidine) dihydrochloride (AAPH)-induced oxidative stress in HepG2 cells. The cellular antioxidant activity assay results showed that AKRA protected AAPH-induced oxidative stress in HepG2 cells in a concentration-dependent manner. Pretreatment of the cells for 2 h with AKRA (0.38-1.50 mg/mL) caused strong intracellular reactive oxygen species (ROS) scavenging activities and prevented a decrease in reduced glutathione (GSH) and increases in oxidized glutathione (GSSG) and malondialdehyde (MDA). In addition, AKRA treatment prevented significant decreases in glutathione peroxidase (GSH-Px), superoxide dismutase (SOD), and catalase (CAT) induced by AAPH. Thus, AKRA treatment ameliorated AAPH-induced oxidative stress in HepG2 cells. This study will be important for the design and regulation of functional Baijiu production.
- Published
- 2017
41. Author response: SAV1 promotes Hippo kinase activation through antagonizing the PP2A phosphatase STRIPAK
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Diana R. Tomchick, Sung Jun Bae, Xuelian Luo, Lisheng Ni, Chad A. Brautigam, and Adam Osinski
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0301 basic medicine ,03 medical and health sciences ,030104 developmental biology ,Chemistry ,Kinase ,Phosphatase ,Protein phosphatase 2 ,Cell biology - Published
- 2017
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42. SAV1 promotes Hippo kinase activation through antagonizing the PP2A phosphatase STRIPAK
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Xuelian Luo, Lisheng Ni, Adam Osinski, Chad A. Brautigam, Diana R. Tomchick, and Sung Jun Bae
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0301 basic medicine ,Scaffold protein ,QH301-705.5 ,Protein Conformation ,Science ,Phosphatase ,Cell Cycle Proteins ,human 293FT cell ,Protein Serine-Threonine Kinases ,Crystallography, X-Ray ,Serine-Threonine Kinase 3 ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Escherichia coli ,Humans ,Hippo Signaling Pathway ,Protein Phosphatase 2 ,Biology (General) ,Hippo signaling pathway ,General Immunology and Microbiology ,Chemistry ,General Neuroscience ,Membrane Proteins ,General Medicine ,Protein phosphatase 2 ,Cell Biology ,3. Good health ,Cell biology ,030104 developmental biology ,Biochemistry ,Hippo signaling ,Phosphorylation ,Phosphatase complex ,Medicine ,human MCF10A cell ,Signal transduction ,Protein Multimerization ,Protein Processing, Post-Translational ,Signal Transduction ,Research Article ,Human - Abstract
The Hippo pathway controls tissue growth and homeostasis through a central MST-LATS kinase cascade. The scaffold protein SAV1 promotes the activation of this kinase cascade, but the molecular mechanisms remain unknown. Here, we discover SAV1-mediated inhibition of the PP2A complex STRIPAKSLMAP as a key mechanism of MST1/2 activation. SLMAP binding to autophosphorylated MST2 linker recruits STRIPAK and promotes PP2A-mediated dephosphorylation of MST2 at the activation loop. Our structural and biochemical studies reveal that SAV1 and MST2 heterodimerize through their SARAH domains. Two SAV1–MST2 heterodimers further dimerize through SAV1 WW domains to form a heterotetramer, in which MST2 undergoes trans-autophosphorylation. SAV1 directly binds to STRIPAK and inhibits its phosphatase activity, protecting MST2 activation-loop phosphorylation. Genetic ablation of SLMAP in human cells leads to spontaneous activation of the Hippo pathway and alleviates the need for SAV1 in Hippo signaling. Thus, SAV1 promotes Hippo activation through counteracting the STRIPAKSLMAP PP2A phosphatase complex.
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- 2017
43. Substrate-Specific Activation of the Mitotic Kinase Bub1 through Intramolecular Autophosphorylation and Kinetochore Targeting
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Hongtao Yu, Diana R. Tomchick, Xuelian Luo, Zhonghui Lin, and Luying Jia
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Models, Molecular ,inorganic chemicals ,Cdc20 Proteins ,BUB1 ,macromolecular substances ,Protein Serine-Threonine Kinases ,Crystallography, X-Ray ,environment and public health ,Protein Structure, Secondary ,Substrate Specificity ,Histones ,Structural Biology ,Catalytic Domain ,Serine ,Humans ,Phosphorylation ,Molecular Biology ,Mitosis ,MAPK14 ,Kinetochore ,Kinase ,Chemistry ,Cell Cycle ,Autophosphorylation ,Cell biology ,enzymes and coenzymes (carbohydrates) ,Spindle checkpoint ,bacteria ,HeLa Cells - Abstract
SummaryDuring mitosis of human cells, the kinase Bub1 orchestrates chromosome segregation through phosphorylating histone H2A and the anaphase-promoting complex/cyclosome activator Cdc20. Bub1-mediated H2A-T120 phosphorylation (H2A-pT120) at kinetochores promotes centromeric sister-chromatid cohesion, whereas Cdc20 phosphorylation by Bub1 contributes to spindle checkpoint signaling. Here, we show that phosphorylation at the P+1 substrate-binding loop of human Bub1 enhances its activity toward H2A but has no effect on its activity toward Cdc20. We determine the crystal structure of phosphorylated Bub1. A comparison between structures of phosphorylated and unphosphorylated Bub1 reveals phosphorylation-triggered reorganization of the P+1 loop. This activating phosphorylation of Bub1 is constitutive during the cell cycle. Enrichment of H2A-pT120 at mitotic kinetochores requires kinetochore targeting of Bub1. The P+1 loop phosphorylation of Bub1 appears to occur through intramolecular autophosphorylation. Our study provides structural and functional insights into substrate-specific regulation of a key mitotic kinase and expands the repertoire of kinase activation mechanisms.
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- 2014
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44. The STRIPAK PP2A complex couples upstream inputs to control Hippo kinase activation
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Xuelian Luo
- Subjects
Inorganic Chemistry ,Structural Biology ,Kinase ,General Materials Science ,Upstream (networking) ,Protein phosphatase 2 ,Physical and Theoretical Chemistry ,Biology ,Condensed Matter Physics ,Biochemistry ,Cell biology - Published
- 2019
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45. Tree height estimation at plateau mountains, northwestern Sichuan, China using dual Pol-InSAR data
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Yong Wang, Huimin Li, and Xuelian Luo
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Canopy ,Synthetic aperture radar ,geography ,Plateau ,geography.geographical_feature_category ,010504 meteorology & atmospheric sciences ,020206 networking & telecommunications ,02 engineering and technology ,Vegetation ,01 natural sciences ,Tree (data structure) ,Interferometric synthetic aperture radar ,0202 electrical engineering, electronic engineering, information engineering ,Phase center ,Satellite ,Geology ,0105 earth and related environmental sciences ,Remote sensing - Abstract
An approach to estimate tree height of coniferous forest in mountainous areas at plateau was developed using a combined function. One pair of dual Pol- InSAR images acquired on 20 June 2007 and 5 August 2007 by Advanced Land Observing Satellite Phased Array L-band Synthetic Aperture Radar (ALOS-PALSAR) sensor over Zoige plateau, northwestern Sichuan, China was used to evaluate the approach. The derived heights indicated that the combined function approach well compensated for underestimated canopy depth using the phase center methods. Thus, tree heights were better approximated in comparison with actually measured tree heights.
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- 2016
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46. Mapping submerged aquatic vegetation in albemarle sound, NOrth Carolina, USA using Landsat-8 and SONAR data
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Joseph Luczhovich, Xuelian Luo, and Yong Wang
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0106 biological sciences ,Hydrology ,geography ,geography.geographical_feature_category ,010504 meteorology & atmospheric sciences ,010604 marine biology & hydrobiology ,Aquatic ecosystem ,01 natural sciences ,Sonar ,Cell size ,Oceanography ,Habitat ,Aquatic plant ,Environmental science ,Sound (geography) ,0105 earth and related environmental sciences - Abstract
As one of most valuable and vulnerable resources in coastal aquatic ecosystems, submerged aquatic vegetation (SAV) and its state have received great attention. There is an urgent need for coastal managers and researches to monitor and assess spatial and temporal distributions of the SAV rapidly. Because of the repetitive coverage, satellite hi-resolution images are proved to be efficient but not suitable in large-scale spatial and multiple temporal assessment due to the concern of cost. Thus, the objective of this research is to probe into the suitability of Landsat-8 OLI data in the mapping of SAV habitats at Albemarle Sound, North Carolina, USA. With SONAR data as in situ measurement, the overall accuracy based on the number (n) of SAV points detected the SONAR per cell was 66.7% if n ≥ 1, 68.3% when n ≥ 6, and 67.8% if n ≥ 10. The cell size was 15m×15m. Thus, the distribution of SAV beds was efficiently depicted using multi-temporal Landsat-8 data. The phenological changes of SAV were revealed.
- Published
- 2016
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47. Snapshots of a hybrid transcription factor in the Hippo pathway
- Author
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Xuelian Luo
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Models, Molecular ,Cell Cycle Proteins ,Review ,Protein Serine-Threonine Kinases ,Biology ,Biochemistry ,DNA-binding protein ,Transcription (biology) ,Drug Discovery ,Animals ,Drosophila Proteins ,Humans ,Protein Interaction Domains and Motifs ,Phosphorylation ,Nuclear protein ,Transcription factor ,Hippo signaling pathway ,Effector ,Intracellular Signaling Peptides and Proteins ,Nuclear Proteins ,TEA Domain Transcription Factors ,YAP-Signaling Proteins ,Cell Biology ,Cell biology ,DNA-Binding Proteins ,Hippo signaling ,Trans-Activators ,Signal transduction ,Signal Transduction ,Transcription Factors ,Biotechnology - Abstract
The Hippo pathway plays key roles in animal development. It suppresses tumorigenesis by controlling the transcription of the target genes that are critical for cell proliferation and apoptosis. The transcriptional coactivator YAP is the major downstream effector of the Hippo signaling. Upon extracellular stimulation, a kinase cascade in the Hippo pathway phosphorylates YAP and promotes its cytoplasmic sequestration by 14-3-3 and ubiquitin-dependent degradation. When the Hippo pathway is turned off, YAP (which lacks a DNA-binding domain) is dephosphorylated and translocates to the nucleus, where it associates with the transcription factor TEAD to form a functional heterodimeric transcription factor and to promote the expression of the Hippo-responsive genes. Recently, structures of the YAP-binding domain of TEAD alone or in complex with YAP have revealed the atomic details of the TEAD-YAP interaction. Here, I review these exciting advances, propose a strategy for targeting the TEAD-YAP interaction using small molecules, and suggest potential mechanisms by which phosphorylation and 14-3-3 binding regulate the cytoplasmic retention of YAP.
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- 2010
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48. Protein Metamorphosis: The Two-State Behavior of Mad2
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Xuelian Luo and Hongtao Yu
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Models, Molecular ,Mad2 ,PrPSc Proteins ,Prions ,Protein Conformation ,Eggs ,Xenopus ,Cell Cycle Proteins ,CDC20 ,Biology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Protein structure ,Structural Biology ,Mad2 Proteins ,Animals ,Humans ,Molecular Biology ,030304 developmental biology ,Anaphase ,0303 health sciences ,Calcium-Binding Proteins ,Nuclear Proteins ,Recombinant Proteins ,Cell biology ,Spindle apparatus ,Ubiquitin ligase ,Repressor Proteins ,Spindle checkpoint ,biology.protein ,Dimerization ,030217 neurology & neurosurgery - Abstract
A given protein generally has only one native tertiary fold, which is the conformation with the lowest Gibbs free energy. Mad2, a protein involved in the spindle checkpoint, however, has two natively folded states with similar Gibbs free energies. Through binding to its target Cdc20, Mad2 inhibits the multisubunit ubiquitin ligase, the anaphase-promoting complex or cyclosome (APC/C), and delays the onset of anaphase until all sister chromatids achieve bipolar attachment to the mitotic spindle. Without ligand binding or covalent modifications, Mad2 adopts two topologically and functionally distinct native folds in equilibrium under physiological conditions. The transition between the two Mad2 states is regulated by multiple mechanisms and is central to the activation and inactivation of the spindle checkpoint. This review summarizes recent structural and biochemical studies on the two-state behavior of Mad2 and discusses the generality and implications of structural malleability of proteins.
- Published
- 2008
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49. p31comet Blocks Mad2 Activation through Structural Mimicry
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Diana R. Tomchick, Xuelian Luo, Bing Li, Maojun Yang, Josep Rizo, Hongtao Yu, and Mischa Machius
- Subjects
Models, Molecular ,Mad2 ,Mad1 ,Molecular Sequence Data ,Cell Cycle Proteins ,CELLCYCLE ,CDC20 ,Biology ,Crystallography, X-Ray ,Protein Structure, Secondary ,Article ,General Biochemistry, Genetics and Molecular Biology ,Cell Line ,chemistry.chemical_compound ,Allosteric Regulation ,Mad2 Proteins ,Animals ,Humans ,Amino Acid Sequence ,Adaptor Proteins, Signal Transducing ,Kinetochore ,Biochemistry, Genetics and Molecular Biology(all) ,Nocodazole ,Calcium-Binding Proteins ,Cell Cycle ,Molecular Mimicry ,Nuclear Proteins ,Mitotic checkpoint complex ,Tubulin Modulators ,Protein Structure, Tertiary ,Cell biology ,Repressor Proteins ,Spindle checkpoint ,chemistry ,Multiprotein Complexes ,biological phenomena, cell phenomena, and immunity ,Sequence Alignment ,Protein Binding - Abstract
Summary The status of spindle checkpoint signaling depends on the balance of two opposing dynamic processes that regulate the highly unusual two-state behavior of Mad2. In mitosis, a Mad1-Mad2 core complex recruits cytosolic Mad2 to kinetochores through Mad2 dimerization and converts Mad2 to a conformer amenable to Cdc20 binding, thereby facilitating checkpoint activation. p31 comet inactivates the checkpoint through binding to Mad1- or Cdc20-bound Mad2, thereby preventing Mad2 activation and promoting the dissociation of the Mad2-Cdc20 complex. Here, we report the crystal structure of the Mad2-p31 comet complex. The C-terminal region of Mad2 that undergoes rearrangement in different Mad2 conformers is a major structural determinant for p31 comet binding, explaining the specificity of p31 comet toward Mad1- or Cdc20-bound Mad2. p31 comet adopts a fold strikingly similar to that of Mad2 and binds at the dimerization interface of Mad2. Thus, p31 comet exploits the two-state behavior of Mad2 to block its activation by acting as an "anti-Mad2."
- Published
- 2007
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50. Structure of an intermediate conformer of the spindle checkpoint protein Mad2
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Xuelian Luo, Hongbin Sun, Mayuko Hara, Engin Özkan, and Hongtao Yu
- Subjects
Models, Molecular ,Protein Folding ,Mad2 ,Magnetic Resonance Spectroscopy ,Cdc20 Proteins ,Protein Conformation ,Mitosis ,Biology ,Calorimetry ,Crystallography, X-Ray ,Anaphase-Promoting Complex-Cyclosome ,Protein Structure, Secondary ,Protein structure ,Mad2 Proteins ,Humans ,Prometaphase ,Kinetochores ,Multidisciplinary ,Binding Sites ,Kinetochore ,Biological Sciences ,Protein Structure, Tertiary ,Spindle checkpoint ,Crystallography ,Mutation ,Biophysics ,Protein folding ,Protein Multimerization ,Protein Binding - Abstract
The spindle checkpoint senses unattached kinetochores during prometaphase and inhibits the anaphase-promoting complex or cyclosome (APC/C), thus ensuring accurate chromosome segregation. The checkpoint protein mitotic arrest deficient 2 (Mad2) is an unusual protein with multiple folded states. Mad2 adopts the closed conformation (C-Mad2) in a Mad1–Mad2 core complex. In mitosis, kinetochore-bound Mad1–C-Mad2 recruits latent, open Mad2 (O-Mad2) from the cytosol and converts it to an intermediate conformer (I-Mad2), which can then bind and inhibit the APC/C activator cell division cycle 20 (Cdc20) as C-Mad2. Here, we report the crystal structure and NMR analysis of I-Mad2 bound to C-Mad2. Although I-Mad2 retains the O-Mad2 fold in crystal and in solution, its core structural elements undergo discernible rigid-body movements and more closely resemble C-Mad2. Residues exhibiting methyl chemical shift changes in I-Mad2 form a contiguous, interior network that connects its C-Mad2–binding site to the conformationally malleable C-terminal region. Mutations of residues at the I-Mad2–C-Mad2 interface hinder I-Mad2 formation and impede the structural transition of Mad2. Our study provides insight into the conformational activation of Mad2 and establishes the basis of allosteric communication between two distal sites in Mad2.
- Published
- 2015
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