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2. Supplemental material for LPS-induced expression of CD14 in the TRIF pathway is epigenetically regulated by sulforaphane in porcine pulmonary alveolar macrophages

Author

Yang, Qin, Pröll, Maren J, Salilew-Wondim, Dessie, Zhang, Rui, Dawit Tesfaye, Huitao Fan, Cinar, Mehmet U, Große-Brinkhaus, Christine, Tholen, Ernst, Islam, Mohammad A, Hölker, Michael, Schellander, Karl, Uddin, Muhammad J, and Neuhoff, Christiane

Subjects
FOS: Clinical medicine, 110306 Endocrinology, humanities
Abstract

Supplemental Material for LPS-induced expression of CD14 in the TRIF pathway is epigenetically regulated by sulforaphane in porcine pulmonary alveolar macrophages by Qin Yang, Maren J Pröll, Dessie Salilew-Wondim, Rui Zhang, Dawit Tesfaye, Huitao Fan, Mehmet U Cinar, Christine Große-Brinkhaus, Ernst Tholen, Mohammad A Islam, Michael Hölker, Karl Schellander, Muhammad J Uddin and Christiane Neuhoff in Innate Immunity

Published
2019
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3. Additional file 1: of MicroRNA-424/503 cluster members regulate bovine granulosa cell proliferation and cell cycle progression by targeting SMAD7 gene through activin signalling pathway

Author

Pande, Hari, Dawit Tesfaye, Hoelker, Michael, Gebremedhn, Samuel, Held, Eva, Neuhoff, Christiane, Tholen, Ernst, Schellander, Karl, and Wondim, Dessie

Abstract

Table S1. Sequence specific primers used for pmirGLO and 3´-UTR amplification of the SMAD7 and ACVR2A gene harboring binding site for miR-424-5p and miR-503-5p. Table S2. Sequence specific primers used for analysis of the relative expression of genes. (PDF 83 kb)

Published
2018
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4. Additional file 4: of Genome-wide DNA methylation patterns of bovine blastocysts derived from in vivo embryos subjected to in vitro culture before, during or after embryonic genome activation

Author

Salilew-Wondim, Dessie, Saeed-Zidane, Mohammed, Hoelker, Michael, Gebremedhn, Samuel, MikhaĂŤl Poirier, Pandey, Hari, Tholen, Ernst, Neuhoff, Christiane, Held, Eva, Besenfelder, Urban, Havlicek, Vita, Rings, Franca, Fournier, Eric, GagnĂŠ, Dominic, Marc-AndrĂŠ Sirard, Robert, Claude, Gad, Ahmed, Schellander, Karl, and Dawit Tesfaye

Subjects
sense organs
Abstract

Figure S2. The circos plot representing the overall methylation levels in the in different blastocyst groups. Positive and negative fold-changes represent the level of hypermethylation and hypomethylation. (PDF 19412 kb)

Published
2018
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5. Additional file 1: of Genome-wide DNA methylation patterns of bovine blastocysts derived from in vivo embryos subjected to in vitro culture before, during or after embryonic genome activation

Author

Salilew-Wondim, Dessie, Saeed-Zidane, Mohammed, Hoelker, Michael, Gebremedhn, Samuel, MikhaĂŤl Poirier, Pandey, Hari, Tholen, Ernst, Neuhoff, Christiane, Held, Eva, Besenfelder, Urban, Havlicek, Vita, Rings, Franca, Fournier, Eric, GagnĂŠ, Dominic, Marc-AndrĂŠ Sirard, Robert, Claude, Gad, Ahmed, Schellander, Karl, and Dawit Tesfaye

Abstract

Table S1. The list of primers used to validate DMRs in blastocysts of different groups using bisulfite sequencing. (DOCX 15 kb)

Published
2018
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6. Additional file 5: of Genome-wide DNA methylation patterns of bovine blastocysts derived from in vivo embryos subjected to in vitro culture before, during or after embryonic genome activation

Author

Salilew-Wondim, Dessie, Saeed-Zidane, Mohammed, Hoelker, Michael, Gebremedhn, Samuel, MikhaĂŤl Poirier, Pandey, Hari, Tholen, Ernst, Neuhoff, Christiane, Held, Eva, Besenfelder, Urban, Havlicek, Vita, Rings, Franca, Fournier, Eric, GagnĂŠ, Dominic, Marc-AndrĂŠ Sirard, Robert, Claude, Gad, Ahmed, Schellander, Karl, and Dawit Tesfaye

Abstract

Figure S3. Genomic distribution of exclusively differentially methylated regions in the 2C_Flush, 8C_Flush or 16C_Flush blastocyst group. (PDF 47 kb)

Published
2018
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7. Additional file 2: of Genome-wide DNA methylation patterns of bovine blastocysts derived from in vivo embryos subjected to in vitro culture before, during or after embryonic genome activation

Author

Salilew-Wondim, Dessie, Saeed-Zidane, Mohammed, Hoelker, Michael, Gebremedhn, Samuel, MikhaĂŤl Poirier, Pandey, Hari, Tholen, Ernst, Neuhoff, Christiane, Held, Eva, Besenfelder, Urban, Havlicek, Vita, Rings, Franca, Fournier, Eric, GagnĂŠ, Dominic, Marc-AndrĂŠ Sirard, Robert, Claude, Gad, Ahmed, Schellander, Karl, and Dawit Tesfaye

Abstract

Table S2. The list of primers used for validation of the differentially expressed genes using qPCR. (DOC 33 kb)

Published
2018
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11. Additional file 7: of Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs

Author

Md Islam, Große-Brinkhaus, Christine, Pröll, Maren, Uddin, Muhammad, Sharmin Rony, Dawit Tesfaye, Tholen, Ernst, Hölker, Michael, Schellander, Karl, and Neuhoff, Christiane

Subjects
fungi
Abstract

Microarray and qRT- PCR expression values obtained for the five selected genes for the validation of microarray results. Two house keeping genes (GAPDH and ACTB) were used for normalization of the expression values. (PDF 20 kb)

Published
2016
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12. Additional file 8: of Deciphering transcriptome profiles of peripheral blood mononuclear cells in response to PRRSV vaccination in pigs

Author

Md Islam, Große-Brinkhaus, Christine, Pröll, Maren, Uddin, Muhammad, Sharmin Rony, Dawit Tesfaye, Tholen, Ernst, Hölker, Michael, Schellander, Karl, and Neuhoff, Christiane

Abstract

Microarray-based expression profiles of selected cell surface markers, (cluster of differentiation (CD)) in PBMCs of vaccinated group (A), and unvaccinated group (B). (PDF 213 kb)

Published
2016
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