1. 42 imputed downsampled ancient human genomes
- Author
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Sousa da Mota, Bárbara, Rubinacci, Simone, Cruz Dávalos, Diana I., G. Amorim, Carlos Eduardo, Sikora, Martin, Johannsen, Niels N., Szmyt, Marzena H., Włodarcza, Piotr, Szczepanek, Anita, Przybyła, Marcin M., Schroeder, Hannes, Allentoft, Morten E., Willerslev, Eske, Malaspinas, Anna-Sapfo, and Delaneau, Olivier
- Subjects
aDNA ,genomics ,imputation - Abstract
This is the dataset of imputed downsampled ancient genomes that we used to assess imputation accuracy of ancient human genomes (for more information, please read our manuscript "Imputation of ancient human genomes"). We downsampled 42 high-coverage ancient genomes (>10x) to coverages 0.1x, 0.25x, 0.5x, 0.75x, 1.0x and 2.0x and we imputed the downsampled data with GLIMPSE v1.1.1 (Rubinacci et al., Nature Genetics (2021)) and using 1000 Genomes as a reference panel., {"references":["Valdiosera, C. et al. Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia. Proc. Natl. Acad. Sci. U. S. A. 115, 3428–3433 (2018)","Lazaridis, I. et al. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature 513, 409–413 (2014)","Cassidy, L. M. et al. Neolithic and Bronze Age migration to Ireland and establishment of the insular atlantic genome. Proc. Natl. Acad. Sci. U. S. A. 113, 368–373 (2016)","Günther, T. et al. Population genomics of Mesolithic Scandinavia : Investigating early postglacial migration routes and high-latitude adaptation. PLoS Biol. 16, e2003703 (2018)","Gamba, C. et al. Genome flux and stasis in a five millennium transect of European prehistory. Nat. Commun. 5, 1–9 (2014)","Sikora, M. et al. Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers. Science 358, 659–662 (2017)","Ebenesersdóttir, S. S. et al. Ancient genomes from Iceland reveal the making of a human population. Science 360, 1028–1032 (2018)","Margaryan, A. et al. Population genomics of the Viking world. Nature 585, 390–396 (2020)","Amorim, C. E. G. et al. Understanding 6th-century barbarian social organization and migration through paleogenomics. Nat. Commun. 9, 3547 (2018)","Schlebusch, C. M. et al. Southern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago. Science 358, 652–655 (2017)","Lipson, M. et al. Ancient West African foragers in the context of African population history. Nature 577, 665–670 (2020)","Gallego Llorente, M. et al. Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent. Science 350, 820–822 (2015)","Jones, E. R. et al. Upper Palaeolithic genomes reveal deep roots of modern Eurasians. Nat. Commun. 6, 1–8 (2015)","Broushaki, F. et al. Early Neolithic genomes from the eastern Fertile Crescent. Science 353, 499–503 (2016)","de Barros Damgaard, P. et al. The first horse herders and the impact of early Bronze Age steppe expansions into Asia. Science 360, (2018)","Moreno-Mayar, J. V. et al. Early human dispersals within the Americas. Science 362, (2018)","Fu, Q. et al. Genome sequence of a 45,000-year-old modern human from western Siberia. Nature 514, 445–449 (2014)","Sikora, M. et al. The population history of northeastern Siberia since the Pleistocene. Nature 570, 182–188 (2019)","Rasmussen, M. et al. Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 463, 757–762 (2010)","Moreno-Mayar, J. V. et al. Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans. Nature 553, 203–207 (2018)","Schroeder, H. et al. Unraveling ancestry, kinship, and violence in a Late Neolithic mass grave. Proc. Natl. Acad. Sci. U. S. A. 166, 10705–10710 (2019)","Allentoft, M. E. et al. Population Genomics of Stone Age Eurasia. bioRxiv 36, 2022.05.04.490594 (2022)"]}
- Published
- 2023
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